Citrus Sinensis ID: 004319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-
Protein Sequence
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAPRNTAQP
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccEEEEEcccccccccccccccHHHHHHccHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEcccEEEEEccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEEccccccccHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHcccccHcEEEEEccHHHHcccccccHHHEEEcHcccccccccHHHHHHHHHccHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEEEEEccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHccccEEEEcccEEEEEccccccEEEEEEEccccccccHHHccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEEcccccHcccccccccccccccEEcHHHHHHHHHHccccccccHHHHHccccEEcccccccccHHHHHHHHHHccccccHHHHccccEEEcccccccc
Coil and Loop (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVgapgsgkstFCEHVMRSSARPWARICQDtinkgksgtkvQCLTSASSAlkkgksvfldrcnlereqrtdfvklggpevdvHAVVLDLPAKLCISRSVKRiehegnlqggKAAAVVNRMLQkkelpklsegfsriTLCQNENDVQAALDtysglgpldtlphgsfgqknpdAKIQLGIMKFLkkvdapsntgstasstqdpvppqiteeknsclegqEITSLLSdaageevkgtenpevasvnqngsssdvptlafpslstsdfqfnnekaSDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQkhinpkkfftfvgDITRLYTGGGLCCNVIANAanwrlkpggggvnaAIFSAAGPALEVATAErakslypgnsvivplpstsplcgregvTHVIHvlgpnmnprrpncldgdyvKGCEILRKAYTSLFEGFLSIVRSQEKlskgcnedirlepsvsqdhsedvhgnyistgdkikrdggheyeqskkcktqnevgtdinlsraanlsadnekigvstSKAWGSWAQALYRTamyperhkddlleisddvvvLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRlgyhsapsmrQLHLHVISqdfnskhlknkkhwnsfntaffcdsVDVLEEISNHGKATLKDYDSLLSMELRchrcrsahpsiprlkshisscrapfpssllengrlmlaprntaqp
Flexible Loop (DISEMBL)
mdtdiddtckakdeekkwkQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTinkgksgtkvQCLTSassalkkgksvfldrcnLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRiehegnlqggkaaAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTgstasstqdpvppQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAkaaqkhinpkkfftfvGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHvlgpnmnprrpnCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRlepsvsqdhsedvhgnYISTGDKIKRDGGHEyeqskkcktqnevgtdinlsraanlsadnekigvstskawgsWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHpsiprlkshissCRAPFPssllengrlmlaprntaqp
Low Complexity Region (SEG)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAPRNTAQP
Disordered region (IsUnstruct)
****************KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN***********************************RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ******LSEGFSRITLCQNENDVQAALDTYSGLGPLDTL************KIQLGIMKFL***************************************************************************************KASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS***************************************************************************IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCR****************************************
Disordered Region (DISOPRED)
*********************LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI********GK*AAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPL*************************************************************************************************AFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL*************PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLS********************************************************************************************QALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDF***HLKNKKHWNSFNTAFFCDSVDVLE****************LSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENG************
Disordered Region (DISEMBL)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKV*******************QITEEKNSCLEGQEITSLLSDA**********PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEP********DVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAPRNTAQP
Disordered Region (DISPRO)
****************KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD***************************************************************DVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK********************************************************************************WGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAPRNTAQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	761	2.2.26 [Sep-21-2011]
Q9M041	912	Transcription factor bHLH	yes	no	0.901	0.752	0.591	0.0
Q7TQC5	342	Aprataxin OS=Mus musculus	yes	no	0.244	0.543	0.451	6e-38
P61797	342	Aprataxin OS=Canis famili	yes	no	0.278	0.619	0.417	1e-37
Q8K4H4	329	Aprataxin OS=Rattus norve	yes	no	0.244	0.565	0.451	3e-37
Q9BGQ0	356	Aprataxin OS=Macaca fasci	N/A	no	0.278	0.595	0.417	4e-37
Q7YRZ1	356	Aprataxin OS=Sus scrofa G	yes	no	0.279	0.598	0.406	5e-37
P61798	316	Aprataxin (Fragment) OS=G	yes	no	0.222	0.534	0.472	2e-36
Q7Z2E3	356	Aprataxin OS=Homo sapiens	yes	no	0.277	0.592	0.402	4e-36
P61801	347	Aprataxin OS=Xenopus trop	yes	no	0.235	0.515	0.453	5e-36
Q7YRZ2	356	Aprataxin OS=Bos taurus G	yes	no	0.222	0.474	0.466	5e-36

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/740 (59%), Positives = 543/740 (73%), Gaps = 54/740 (7%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E  K KQI+V+++G PGSGKSTFC+  MRSS RPW+RICQD +N GK+GTK QCL  A+ 
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
           +L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR  HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340

Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
           GG+AAAVVN+MLQ KELPK++EGFSRI  C ++ DV  A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400

Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
             D K Q GIMKF KKV A P+++ + A+              N+  +  E+T+      
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
                   N  V+ V + GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
            ARLVLVDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K      R   +  
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
            D  ED           IK D     E++KK K   +     NL   +    D    G  
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708

Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612
            SK W +WA AL+  AM+PERH++ +LE  D++VV+ND YPKA+KH+LVL+R + LD L 
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPKARKHVLVLARQESLDGLE 768

Query: 613 DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHL 672
           DVR E+LQ+LQ MH VG+KW ++F +EDASL FRLGYHS PSMRQLHLHVISQDFNS  L
Sbjct: 769 DVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFNSDSL 828

Query: 673 KNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKS 732
           KNKKHWNSF T+FF DSVDVLEE+++ GKA +   D LL  ELRC+RCRSAHP+IP+LKS
Sbjct: 829 KNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED-LLKGELRCNRCRSAHPNIPKLKS 887

Query: 733 HISSCRAPFPSSLLENGRLM 752
           H+ SC + FP  LL+N RL+
Sbjct: 888 HVRSCHSQFPDHLLQNNRLV 907

Arabidopsis thaliana (taxid: 3702)

>sp|Q7TQC5|APTX_MOUSE Aprataxin OS=Mus musculus GN=Aptx PE=2 SV=2

 Score =  159 bits (403), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 11/197 (5%)

Query: 541 NLSADNEKIGVSTSKAWGSWAQALYRTAMYPER--HKDDLLEISDDVVVLNDLYPKAQKH 598
           ++S   +K G +  ++ G W+Q L  +   P+   +KDD       VVV+ D YPKA+ H
Sbjct: 148 SVSPKKDKNGATKKESLGHWSQGLKMSMKDPKMQVYKDD------QVVVIKDKYPKARHH 201

Query: 599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
            LVL  +  +  L  V +EHL++L+ MHAVG K    F    + L FRLGYH+ PSM  +
Sbjct: 202 WLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFA-GSSKLRFRLGYHAIPSMSHV 259

Query: 659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYD-SLLSMELRC 717
           HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G+ T+KD    LL + LRC
Sbjct: 260 HLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELLKLPLRC 319

Query: 718 HRCRSAHPSIPRLKSHI 734
           H C+   PSIP+LK H+
Sbjct: 320 HECQQLLPSIPQLKEHL 336

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P61797|APTX_CANFA Aprataxin OS=Canis familiaris GN=APTX PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 135/230 (58%), Gaps = 18/230 (7%)

Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
           D I+RD   E E S    T  E G+D   S   ++  +  K   +  ++ G W+Q L + 
Sbjct: 122 DSIERDAAQEAESS----TGLEPGSD---SSQCSVPLNKGKDAPTKKESLGHWSQGL-KI 173

Query: 568 AMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
           +M     +D  +++  D  VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ M
Sbjct: 174 SM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WASVSSLKAVTGEHLELLKHM 227

Query: 626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
           H VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +
Sbjct: 228 HTVGEKMIADFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 286

Query: 686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
           F +S  V+E + + G+ +++D    LL + LRCH C+   PSIP+LK H+
Sbjct: 287 FLESQAVIEMVQHAGRVSVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 336

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8K4H4|APTX_RAT Aprataxin OS=Rattus norvegicus GN=Aptx PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 11/197 (5%)

Query: 541 NLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKH 598
           ++S    K G +  ++ G W+Q L + +M     KD  +++   D VVV+ D YPKA+ H
Sbjct: 135 SVSPKTGKHGAAKEESLGHWSQGL-KISM-----KDPKMQVYKDDQVVVIKDKYPKARHH 188

Query: 599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
            LVL  +  +  L  V +EHL++L+ MHAVG K    F    + L FRLGYH+ PSM  +
Sbjct: 189 WLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFT-GSSKLRFRLGYHAIPSMSHV 246

Query: 659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYD-SLLSMELRC 717
           HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G+ T+KD    LL + LRC
Sbjct: 247 HLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELLKLPLRC 306

Query: 718 HRCRSAHPSIPRLKSHI 734
           H C+   PSIP+LK H+
Sbjct: 307 HECQQLLPSIPQLKEHL 323

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BGQ0|APTX_MACFA Aprataxin OS=Macaca fascicularis GN=APTX PE=2 SV=1

 Score =  157 bits (396), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 18/230 (7%)

Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
           D I+RD  HE E      T  E G++ N          +  I     ++ G W+Q L + 
Sbjct: 136 DSIERDAAHEAEPG----TGLEPGSNHNQCSVPPKKGKDAPI---KKESLGHWSQGL-KI 187

Query: 568 AMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
           +M     +D  +++  D  VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ M
Sbjct: 188 SM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WTAISSLKAVTREHLELLKHM 241

Query: 626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
           H VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +
Sbjct: 242 HTVGEKVIVDFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 300

Query: 686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
           F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+LK H+
Sbjct: 301 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7YRZ1|APTX_PIG Aprataxin OS=Sus scrofa GN=APTX PE=2 SV=1

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 131/231 (56%), Gaps = 18/231 (7%)

Query: 507 GDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYR 566
            D ++RD   E + S    T  E G++ +     ++    EK   +  ++   W+Q L  
Sbjct: 135 SDSVERDASQEAKPS----TGAEPGSNPS---QCSVPPKKEKDAATKKESLSHWSQGLKI 187

Query: 567 TAMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQT 624
           +   P+   +KDD       VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ 
Sbjct: 188 SMEDPKMQVYKDD------QVVVIKDKYPKARYHWLVLP-WASISSLKAVTREHLELLRH 240

Query: 625 MHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTA 684
           MH VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT 
Sbjct: 241 MHTVGEKVIADFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTE 299

Query: 685 FFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
           +F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+LK H+
Sbjct: 300 YFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P61798|APTX_CHICK Aprataxin (Fragment) OS=Gallus gallus GN=APTX PE=2 SV=1

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 11/180 (6%)

Query: 558 GSWAQALYRTAMYP--ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVR 615
           G W+Q L  +   P  + +KD+        VV+ D YPKA+ H LVL  +D +  L  V 
Sbjct: 139 GHWSQGLKSSMQDPKVQVYKDE------KTVVIKDKYPKARYHWLVLP-WDSISSLKSVT 191

Query: 616 NEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
            EHL +L+ MHAVG K  ++   ++ SL FRLGYH+ PSM QLHLHVISQDF+S  LK K
Sbjct: 192 REHLGLLEHMHAVGQKMIQQCPAKE-SLEFRLGYHAIPSMSQLHLHVISQDFDSPALKTK 250

Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDS-LLSMELRCHRCRSAHPSIPRLKSHI 734
           KHWNSF T +F +S +V+E + + GK T+ D  S LL + LRCH C+    +IP+LK H+
Sbjct: 251 KHWNSFTTEYFLNSEEVIEMVRSKGKVTVNDQASELLKLPLRCHLCKQQLSTIPQLKEHL 310

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7Z2E3|APTX_HUMAN Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2

 Score =  153 bits (387), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 129/231 (55%), Gaps = 20/231 (8%)

Query: 508 DKIKRDGGHEYEQSKKCKTQNEVGT-DINLSRAANLSADNEKIGVSTSKAWGSWAQALYR 566
           D I+RD   E E     +  +  G   + L +  +     E +G         W+Q L +
Sbjct: 136 DSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLG--------HWSQGL-K 186

Query: 567 TAMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQT 624
            +M     +D  +++  D  VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ 
Sbjct: 187 ISM-----QDPKMQVYKDEQVVVIKDKYPKARYHWLVLP-WTSISSLKAVAREHLELLKH 240

Query: 625 MHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTA 684
           MH VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT 
Sbjct: 241 MHTVGEKVIVDFA-GSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTE 299

Query: 685 FFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
           +F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+LK H+
Sbjct: 300 YFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH(2)) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P61801|APTX_XENTR Aprataxin OS=Xenopus tropicalis GN=aptx PE=2 SV=1

 Score =  153 bits (387), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 119/192 (61%), Gaps = 13/192 (6%)

Query: 547 EKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKHILVLSR 604
           EK      K+ G W+Q L + +M     +D  +++   D VVV+ D YPKA+ H LVL  
Sbjct: 159 EKYNAQEVKSQGHWSQGL-KASM-----QDPTMQVFKDDKVVVIKDKYPKARYHWLVLP- 211

Query: 605 FDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLA-FRLGYHSAPSMRQLHLHVI 663
           +  +  L  +R EHL+++Q MHAVG K A++  H D+  A F+LGYH+ PSM  +HLHVI
Sbjct: 212 WQSIANLKVLRAEHLELVQHMHAVGQKIAKE--HSDSKCAPFQLGYHAIPSMSHVHLHVI 269

Query: 664 SQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRS 722
           SQDF+S  LKNKKHWNSF T +F +S  ++E I  HGK  +KD    LL   L CH CR 
Sbjct: 270 SQDFDSPCLKNKKHWNSFTTDYFLESQAMIEMIKTHGKVNVKDGVSELLKTPLMCHICRK 329

Query: 723 AHPSIPRLKSHI 734
              ++P+LK H+
Sbjct: 330 EQANMPQLKEHL 341

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7YRZ2|APTX_BOVIN Aprataxin OS=Bos taurus GN=APTX PE=2 SV=1

 Score =  153 bits (386), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 11/180 (6%)

Query: 558 GSWAQALYRTAMYPERHKDDLLEISDD--VVVLNDLYPKAQKHILVLSRFDGLDRLADVR 615
           G W+Q L + +M     +D  +++  D  VVV+ D YPKA+ H LVL  +  +  L  V 
Sbjct: 179 GHWSQGL-KISM-----EDPKMQVYKDEQVVVIKDKYPKARFHWLVLP-WASISSLKAVT 231

Query: 616 NEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
            EHL++L+ MHAVG K    F    +   FRLGYH+ PSM  +HLHVISQDF+S  LKNK
Sbjct: 232 REHLELLRHMHAVGEKVIADFA-GSSKFRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNK 290

Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
           KHWNSFNT +F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+LK H+
Sbjct: 291 KHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 350

DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non-ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5'-phosphate termini, resulting in the production of 5'-phosphate termini that can be efficiently rejoined. Also able to hydrolyze adenosine 5'-monophosphoramidate (AMP-NH2) and diadenosine tetraphosphate (AppppA), but with lower catalytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	761
359481176	734	PREDICTED: transcription factor bHLH140-	0.944	0.979	0.693	0.0
224140455	718	predicted protein [Populus trichocarpa]	0.936	0.993	0.692	0.0
255579308	749	aprataxin, putative [Ricinus communis] g	0.930	0.945	0.690	0.0
356496191	734	PREDICTED: transcription factor bHLH140-	0.943	0.978	0.650	0.0
296081123	678	unnamed protein product [Vitis vinifera]	0.879	0.986	0.647	0.0
147867251	864	hypothetical protein VITISV_005888 [Viti	0.963	0.848	0.640	0.0
449440255	712	PREDICTED: transcription factor bHLH140-	0.919	0.983	0.633	0.0
449483719	712	PREDICTED: transcription factor bHLH140-	0.919	0.983	0.633	0.0
15240948	912	aprataxin [Arabidopsis thaliana] gi|7533	0.901	0.752	0.591	0.0
297810265	898	basic helix-loop-helix family protein [A	0.919	0.779	0.579	0.0

>gi|359481176|ref|XP_002270443.2| PREDICTED: transcription factor bHLH140-like [Vitis vinifera]

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/747 (69%), Positives = 605/747 (80%), Gaps = 28/747 (3%)

Query: 11  AKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTS 70
           +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL S
Sbjct: 7   SKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKS 66

Query: 71  ASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
           A+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEG
Sbjct: 67  ATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEG 126

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSF 190
           NLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G F
Sbjct: 127 NLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCF 186

Query: 191 GQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSD 250
           GQKNPDAKIQLGIMKFLKKV+ P N G   SS                          S 
Sbjct: 187 GQKNPDAKIQLGIMKFLKKVEVPVNVGEDISS--------------------------SS 220

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
              +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK
Sbjct: 221 GNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNK 280

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           + NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAA
Sbjct: 281 VENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAA 340

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  REGVTHVI
Sbjct: 341 NWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSREGVTHVI 400

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E++R E S
Sbjct: 401 HVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSENLRSELS 460

Query: 491 VSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCKT-QNEVGTDINLSRAANLSADNEK 548
           VSQDH +  H   +   D KIKR G +E E SKKCK  Q+E   D   S+      +NEK
Sbjct: 461 VSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEHEFDCTESKEGKDKLNNEK 520

Query: 549 IGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGL 608
           IG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPKAQ+H+LVL+R +GL
Sbjct: 521 IGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPKAQRHLLVLARSEGL 580

Query: 609 DRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFN 668
           D LADV  EHLQ+L+TMHAVG+KWAEKFL ED  L FR+GYHSAPSMRQLHLHVISQDFN
Sbjct: 581 DCLADVGGEHLQLLRTMHAVGLKWAEKFLCEDELLVFRIGYHSAPSMRQLHLHVISQDFN 640

Query: 669 SKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIP 728
           SKHLKNKKHWNSFN+AFF DSVDV+EEI+NHG+AT+K  DS LSMELRCHRCRSAHP++P
Sbjct: 641 SKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQLSMELRCHRCRSAHPNMP 700

Query: 729 RLKSHISSCRAPFPSSLLENGRLMLAP 755
           RLKSHIS+C+A FP SLL+N RL+LAP
Sbjct: 701 RLKSHISNCQASFPPSLLQNDRLVLAP 727

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140455|ref|XP_002323598.1| predicted protein [Populus trichocarpa] gi|222868228|gb|EEF05359.1| predicted protein [Populus trichocarpa]

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/748 (69%), Positives = 600/748 (80%), Gaps = 35/748 (4%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E++K K ++VI+VGAPGSGKSTFCEHVM SS RPW RICQDTIN GK+GTK QCL  A++
Sbjct: 1   EQQKGKPVMVILVGAPGSGKSTFCEHVMGSSLRPWTRICQDTINNGKAGTKPQCLKRAAA 60

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL 132
           ALK+GKSVF+DRCNL++EQR+DFVKL  G +VDVHAVVLDLPA+LCISRSVKR  HEGNL
Sbjct: 61  ALKEGKSVFIDRCNLDKEQRSDFVKLDCGAQVDVHAVVLDLPAQLCISRSVKRTGHEGNL 120

Query: 133 QGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQ 192
           QGGKAAAVVNRMLQKKELPKL+EGF+RI  C NENDV+A +  Y+ LGPLDTL +G FGQ
Sbjct: 121 QGGKAAAVVNRMLQKKELPKLNEGFARIVFCHNENDVEATIKAYTALGPLDTLSNGCFGQ 180

Query: 193 KNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
           KNPDAKIQLGIMKFLKKV+APS+ GS A+S                              
Sbjct: 181 KNPDAKIQLGIMKFLKKVEAPSSLGSCAAS------------------------------ 210

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
            ++VK +E+    SV+ + S  D+ TLAFPS+ST+DFQFNNEKASD+I+EKVEEFVNKL 
Sbjct: 211 -KDVKESEDLAKDSVDADVSVGDITTLAFPSISTADFQFNNEKASDIIVEKVEEFVNKLE 269

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
           NAR VLVDL+ GSKILSLVRAKAA+++I+ KKFFTFVGDITRLY+ GGL CN IANAANW
Sbjct: 270 NARFVLVDLSHGSKILSLVRAKAAKRNIDSKKFFTFVGDITRLYSQGGLRCNAIANAANW 329

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF+AAGP+LE AT ERAKSL PG++V+VPLPS SPL  RE V+HVIHV
Sbjct: 330 RLKPGGGGVNAAIFAAAGPSLETATKERAKSLLPGHAVVVPLPSDSPLYTREEVSHVIHV 389

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP+RPN L+ DY KGC ILR+AYTSLF GFLSIVRS+ KL +   E +   PS  
Sbjct: 390 LGPNMNPQRPNSLNNDYTKGCSILREAYTSLFTGFLSIVRSRSKLPRRIIEKLESSPSDL 449

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGTDINL--SRAANLSADNEKI 549
           +D S     +  ++  KIKRD    YE+SKKCK T +E   DI+   S    ++ D  K+
Sbjct: 450 KDPSHGPRNHLTNSDQKIKRDDDCVYERSKKCKGTHDETVADISAPSSTYGKVTGDKSKL 509

Query: 550 GVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLD 609
              TSK+WGSWAQALY  AM+PE+HKD LLE+ DDVVVLNDLYPKA KH+LVL+R +GLD
Sbjct: 510 EGPTSKSWGSWAQALYHIAMHPEKHKDKLLEVLDDVVVLNDLYPKACKHLLVLARHEGLD 569

Query: 610 RLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNS 669
            LADV  EHLQ+L TMHAVG+KWAEKFLHED+S+ FRLGYHS PSMRQLHLHVISQDFNS
Sbjct: 570 CLADVHQEHLQLLMTMHAVGLKWAEKFLHEDSSMVFRLGYHSVPSMRQLHLHVISQDFNS 629

Query: 670 KHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPR 729
            HLKNKKHWNSFNTAFF DSVDV+EEI NHGKAT+KD D  LSMELRCHRCRSAHP+IPR
Sbjct: 630 NHLKNKKHWNSFNTAFFRDSVDVIEEIKNHGKATIKDEDCRLSMELRCHRCRSAHPNIPR 689

Query: 730 LKSHISSCRAPFPSSLLENGRLMLAPRN 757
           LKSHIS C+APFP +LLENGRL+LAP++
Sbjct: 690 LKSHISICQAPFPHALLENGRLVLAPKH 717

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579308|ref|XP_002530499.1| aprataxin, putative [Ricinus communis] gi|223529956|gb|EEF31883.1| aprataxin, putative [Ricinus communis]

 Score = 1036 bits (2680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/746 (69%), Positives = 603/746 (80%), Gaps = 38/746 (5%)

Query: 20  QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK 79
           QI+V++VG PGSGKSTFC+HVM SS+RPW+RICQDTIN GK+GTK QCL SA +ALK+GK
Sbjct: 34  QIVVLLVGPPGSGKSTFCDHVMSSSSRPWSRICQDTINNGKAGTKPQCLKSAVNALKEGK 93

Query: 80  SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA 139
           SVF+DRCNL++EQR +FVKL   ++DVHAVVLDLPA+LCISRSVKR  HEGNLQGGKAAA
Sbjct: 94  SVFIDRCNLDKEQRAEFVKLADSQIDVHAVVLDLPAQLCISRSVKRTAHEGNLQGGKAAA 153

Query: 140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKI 199
           VVNRMLQKKELPKLSEGFSRI  C NE+DVQAA+D YS LGPLD LP+GSFGQK PDAK+
Sbjct: 154 VVNRMLQKKELPKLSEGFSRIMFCPNESDVQAAIDMYSALGPLDILPNGSFGQKKPDAKV 213

Query: 200 QLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGT 259
           Q GIMKFLKKVDAPSN GS  +                          LS    +EVK +
Sbjct: 214 QQGIMKFLKKVDAPSNVGSNIA--------------------------LSATTSKEVKES 247

Query: 260 ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLV 319
           E+    S+  +  S  +PTLAFPS+ST+DFQF+NEKASD+I+EKVEEFV KLGNARLVLV
Sbjct: 248 EDLIKGSICHDEDS--IPTLAFPSISTADFQFHNEKASDIIVEKVEEFVKKLGNARLVLV 305

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           DL+QGSKILSLVRAKAAQ++I+  KFFTFVGDIT+L + GGL CNVIANAANWRLKPGGG
Sbjct: 306 DLSQGSKILSLVRAKAAQRNISTNKFFTFVGDITQLLSQGGLRCNVIANAANWRLKPGGG 365

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNP 439
           GVNAAI+SAAGPALEVAT E A SL PG++V+VPLPS SPL  REGV+H+IHVLGPNMNP
Sbjct: 366 GVNAAIYSAAGPALEVATKELATSLLPGHAVVVPLPSNSPLYHREGVSHIIHVLGPNMNP 425

Query: 440 RRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDV 499
           +RPNCL+GDY KGC+IL  AYTSLF GF+SI+++Q K  K   E++  + S+ QD S D+
Sbjct: 426 QRPNCLNGDYAKGCKILSDAYTSLFGGFVSILQNQAKSGKS-RENLVSDQSL-QDMSHDI 483

Query: 500 HGNYISTGD-KIKRDGGHEYEQSKKCK-TQNEVGTDINLSRAA----NLSADNEKIGVST 553
             N ++ GD KIKRD  +  E+SKK K +QNE  T +N + +      +S DN KI  ST
Sbjct: 484 PRNILTNGDQKIKRDDDYMTEKSKKYKGSQNE--TRVNSTGSGCTYGKISRDNSKIDGST 541

Query: 554 SKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD 613
           SK+W SWAQALY  AM PERHKD+LLEISDDVVVLNDLYPKAQKH+LVL+R+ GLD LAD
Sbjct: 542 SKSWNSWAQALYHIAMRPERHKDELLEISDDVVVLNDLYPKAQKHLLVLARYPGLDGLAD 601

Query: 614 VRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLK 673
           V  EH+Q+L TMH VG+KWA++FLHED+S+ FRLGYHS PSMRQLHLHVISQDFNS HLK
Sbjct: 602 VHEEHIQLLTTMHTVGLKWAKRFLHEDSSMIFRLGYHSTPSMRQLHLHVISQDFNSNHLK 661

Query: 674 NKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKSH 733
           NKKHWN+FNTAFF DSVDV+EE+ NHGKA +KD +S LSMELRCHRCRSAHP+IPRL+SH
Sbjct: 662 NKKHWNTFNTAFFRDSVDVIEEVQNHGKANIKDDNSYLSMELRCHRCRSAHPNIPRLRSH 721

Query: 734 ISSCRAPFPSSLLENGRLMLAPRNTA 759
           IS+CRAPFP+ LLE  RL+L   NT+
Sbjct: 722 ISNCRAPFPTFLLEKDRLLLPQDNTS 747

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496191|ref|XP_003516953.1| PREDICTED: transcription factor bHLH140-like [Glycine max]

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/763 (65%), Positives = 587/763 (76%), Gaps = 45/763 (5%)

Query: 1   MDTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           MD D+++    K+     K +LVI+VGAPGSGKSTFCE VM SS RPW R+CQDTI  GK
Sbjct: 1   MDMDVEEASAPKER----KPVLVILVGAPGSGKSTFCEEVMGSSTRPWVRVCQDTIGNGK 56

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCI 119
           +G K QCL+SA+ ALK GKSVF+DRCNL+REQR++F+KLG GP++DVHAVVLDLPAKLCI
Sbjct: 57  AGNKAQCLSSATRALKDGKSVFIDRCNLDREQRSEFIKLGDGPQIDVHAVVLDLPAKLCI 116

Query: 120 SRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGL 179
           SRSVKR  HEGNLQGGKAAAVVNRMLQ KELPKLSEGFSRIT CQNE+DV+ AL+TYS L
Sbjct: 117 SRSVKRTGHEGNLQGGKAAAVVNRMLQHKELPKLSEGFSRITFCQNESDVKNALNTYSTL 176

Query: 180 GPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCL 239
           GPLD+L +G FGQKNPD+KIQ+GIMKFLK+ + P    S                     
Sbjct: 177 GPLDSLQYGCFGQKNPDSKIQVGIMKFLKRAEVPQTFSS--------------------- 215

Query: 240 EGQEITSLLSDAAGEEVKGTENPEVASVNQNG---SSSDVPTLAFPSLSTSDFQFNNEKA 296
                   + D    E K  EN  V SV  +    S  D+PTLAFPS+STSDFQFN+EKA
Sbjct: 216 --------IPDNDNSETKEVENQAVGSVGSHANQVSLDDIPTLAFPSISTSDFQFNHEKA 267

Query: 297 SDVIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLY 356
           +D+I+EKV EF NK  NARLVLVDL+  SKILSLV+AK A K+I+ +KFFT VGDIT LY
Sbjct: 268 ADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKAKIAGKNIDAQKFFTHVGDITHLY 327

Query: 357 TGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPS 416
           + GGL CNVIANAANWRL PGGGGVNAAIF+AAGP LE AT E+ +SL PGN+ +VPLPS
Sbjct: 328 SRGGLRCNVIANAANWRLNPGGGGVNAAIFNAAGPELESATKEKVQSLSPGNAAVVPLPS 387

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK 476
           +SPL  REGVTHVIHV+GPNMNP+RPNCL+ DY KGC+IL+ AYTSLFEGF SIVR+Q  
Sbjct: 388 SSPLFTREGVTHVIHVVGPNMNPQRPNCLNNDYNKGCKILQDAYTSLFEGFASIVRNQTW 447

Query: 477 LSKGCNEDIR---LEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCK-TQNEVGT 532
              G +E++    LE  V  D S +    +  T  K KRD  H   +SKK K T+++ G 
Sbjct: 448 HPVGKSENLERKSLELQVQSDCSRNY---FTKTDQKSKRDVDHGLGKSKKYKGTRDDSGL 504

Query: 533 DINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLY 592
               SR  N+ +++ +   S +K WGSWAQAL++ AM+PE+ KDDLLEISDDVVVLND+Y
Sbjct: 505 TFTDSRNENVDSEH-RTERSMTKTWGSWAQALHQIAMHPEKLKDDLLEISDDVVVLNDMY 563

Query: 593 PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSA 652
           PKA+KH+LVL+R  GLD LADV+ EHLQ+L  MH VG+KWAEKFL+E+ASL FRLGYHSA
Sbjct: 564 PKARKHVLVLARTGGLDCLADVQKEHLQLLNKMHDVGLKWAEKFLNENASLVFRLGYHSA 623

Query: 653 PSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLS 712
           PSMRQLHLHVISQDF S HLKNKKHWNSFNTAFF DSVDV++EIS+ GKA LKD D LLS
Sbjct: 624 PSMRQLHLHVISQDFESIHLKNKKHWNSFNTAFFRDSVDVIDEISSDGKAKLKDDDKLLS 683

Query: 713 MELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAP 755
           MELRCHRCRSAHP+IPRLKSHIS+C++PFP+ LL++GRL+ AP
Sbjct: 684 MELRCHRCRSAHPNIPRLKSHISNCQSPFPAHLLQHGRLVRAP 726

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081123|emb|CBI18255.3| unnamed protein product [Vitis vinifera]

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/752 (64%), Positives = 577/752 (76%), Gaps = 83/752 (11%)

Query: 4   DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT 63
           ++D    +K+ E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GT
Sbjct: 3   EMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGT 62

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
           K QCL SA+SAL+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSV
Sbjct: 63  KSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSV 122

Query: 124 KRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLD 183
           KR  HEGNLQGGKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LD
Sbjct: 123 KRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLD 182

Query: 184 TLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE 243
           TLP G FGQKNPDAKIQL                                + + C + ++
Sbjct: 183 TLPPGCFGQKNPDAKIQLA-------------------------------KDSCCKQPED 211

Query: 244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEK 303
           I+S  S    +E+KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EK
Sbjct: 212 ISS--SSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEK 269

Query: 304 VEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCC 363
           VEEFVNK+ NARLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL C
Sbjct: 270 VEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRC 329

Query: 364 NVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR 423
           N IANAANWRLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++VPLPSTSPL  R
Sbjct: 330 NAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFSR 389

Query: 424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNE 483
           EGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ +Q  L +G +E
Sbjct: 390 EGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSSE 449

Query: 484 DIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLS 543
           ++R E                                               LSR   + 
Sbjct: 450 NLRSE-----------------------------------------------LSR---VG 459

Query: 544 ADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLS 603
            +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLNDLYPKAQ+H+LVL+
Sbjct: 460 LNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPKAQRHLLVLA 519

Query: 604 RFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVI 663
           R +GLD LADV  EHLQ+L+TMHAVG+KWAEKFL ED  L FR+GYHSAPSMRQLHLHVI
Sbjct: 520 RSEGLDCLADVGGEHLQLLRTMHAVGLKWAEKFLCEDELLVFRIGYHSAPSMRQLHLHVI 579

Query: 664 SQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSA 723
           SQDFNSKHLKNKKHWNSFN+AFF DSVDV+EEI+NHG+AT+K  DS LSMELRCHRCRSA
Sbjct: 580 SQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQLSMELRCHRCRSA 639

Query: 724 HPSIPRLKSHISSCRAPFPSSLLENGRLMLAP 755
           HP++PRLKSHIS+C+A FP SLL+N RL+LAP
Sbjct: 640 HPNMPRLKSHISNCQASFPPSLLQNDRLVLAP 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867251|emb|CAN83280.1| hypothetical protein VITISV_005888 [Vitis vinifera]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/765 (64%), Positives = 583/765 (76%), Gaps = 32/765 (4%)

Query: 15  EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA 74
           E + K I+V+++GAPGSGKSTFCEHV+RSS RPW R+CQDTI  GK+GTK QCL SA+SA
Sbjct: 101 EGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKAGTKSQCLKSATSA 160

Query: 75  LKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG 134
           L+ GKSVF+DRCNL+REQR +FVKLG P+V++HAVVLDLPA+LCISRSVKR  HEGNLQG
Sbjct: 161 LEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISRSVKRTGHEGNLQG 220

Query: 135 GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKN 194
           GKAAAVVNRMLQKKELPKLSEGF RIT CQN++DVQ AL+TYS L  LDTLP G FGQKN
Sbjct: 221 GKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSHLDTLPPGCFGQKN 280

Query: 195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE 254
           PDAKIQLGIMKFLKKV+ P N G  A+  + P+  QIT+  +SC +  E  S  S    +
Sbjct: 281 PDAKIQLGIMKFLKKVEVPVNVGPDANFPKHPLSTQITKXXDSCCKQPEDIS-SSSGNXK 339

Query: 255 EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNA 314
            +KG E+  V SV+   SS D+PTLAFPS+ST+DFQFN+EKA+D+I+EKVEEFVNK+ NA
Sbjct: 340 XIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILEKVEEFVNKVENA 399

Query: 315 RLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW-- 372
           RLVLVDL+ GSKILSLVRAKAAQ++I+  KFFTFVGDITRLY+ GGL CN IANAAN   
Sbjct: 400 RLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLRCNAIANAANCKF 459

Query: 373 --------------------RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIV 412
                               RLKPGGGG NAAIFSAAGP LEV T +RA SL PG +++V
Sbjct: 460 PFVGLICMSRRSFEKASPCRRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVV 519

Query: 413 PLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVR 472
           PLPSTSPL  REGVTHVIHVLGPNMN +RPNCL+ DYVKG ++LR+AYTSLFEGF SI+ 
Sbjct: 520 PLPSTSPLFSREGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMN 579

Query: 473 SQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGD-KIKRDGGHEYEQSKKCKT-QNEV 530
           +Q  L +G +E++R E SVSQDH +  H   +   D KIKR G +E E SKKCK  Q+E 
Sbjct: 580 TQGNLLEGSSENLRSELSVSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEH 639

Query: 531 GTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLND 590
             D   S+      +NEKIG + +K WGSWAQ+LY  AM+PE+HKD+L+EISDDVVVLND
Sbjct: 640 EFDCTESKEGKDXLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLND 699

Query: 591 LYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYH 650
            YPK  +   VL  F+ +  +   RN   ++L  +         + L     L + LG  
Sbjct: 700 XYPKKPEKDFVLGNFELVVGVXH-RNXLHKLLGHLDI-----KPRALVPSHGLPWVLG-Q 752

Query: 651 SAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSL 710
           +APSMRQLHLHVISQDFNSKHLKNKKHWNSFN+AFF DSVDV+EEI+NHG+AT+K  DS 
Sbjct: 753 AAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSX 812

Query: 711 LSMELRCHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAP 755
           LSMELRCHRCRSAHP++PRLKSHIS+C+A FP SLL+N RL+LAP
Sbjct: 813 LSMELRCHRCRSAHPNMPRLKSHISNCQASFPPSLLQNDRLVLAP 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440255|ref|XP_004137900.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/747 (63%), Positives = 564/747 (75%), Gaps = 47/747 (6%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEK-NSCLEGQEITSLLSD 250
           QKNPD K+QLGI KFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGITKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+EKVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDR 610
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPKA+KH+LV++R +GLD+
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPKARKHLLVVARHEGLDQ 561

Query: 611 LADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSK 670
           LADV  EHL +L+TMHA+G+KW  KF  ED  L FRLGYHSAPSMRQLHLHVISQDF+S 
Sbjct: 562 LADVCTEHLPLLRTMHAMGLKWINKFFREDGPLVFRLGYHSAPSMRQLHLHVISQDFDSS 621

Query: 671 HLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRL 730
           HLKNKKHWNSFNT FF DSV V+ E+S+HGKA + D +SL+SMELRC+RCRSAHP++P+L
Sbjct: 622 HLKNKKHWNSFNTDFFRDSVIVINEVSSHGKANIMDDESLMSMELRCNRCRSAHPNLPKL 681

Query: 731 KSHISSCRAPFPSSLLENGRLMLAPRN 757
           K+HIS C+APFPS+LLE GRL++ P N
Sbjct: 682 KAHISKCQAPFPSTLLEGGRLVVEPSN 708

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483719|ref|XP_004156669.1| PREDICTED: transcription factor bHLH140-like [Cucumis sativus]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/747 (63%), Positives = 564/747 (75%), Gaps = 47/747 (6%)

Query: 12  KDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA 71
           K +E + K I+VI+VGAPGSGKSTFCE VM SS+RPW RICQDTI  GKSGT+ QCL +A
Sbjct: 8   KGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTRAQCLKTA 67

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN 131
           +SAL  GKSVF+DRCNLE EQR DFVKLGGP+VDVHAVVLDLPA+LCISRSVKR  HEGN
Sbjct: 68  TSALNDGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTGHEGN 127

Query: 132 LQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFG 191
           L GGKAAAVVN+MLQKKELPKL+EGF+RIT C NE+DV +A+D Y  L     LPHG FG
Sbjct: 128 LSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNESDVLSAIDMYKSLDLHTMLPHGCFG 187

Query: 192 QKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEK-NSCLEGQEITSLLSD 250
           QKNPD K+QLGIMKFLKK + PS T S+A++ ++   PQ T+EK  SC            
Sbjct: 188 QKNPDKKVQLGIMKFLKKAEKPSKTCSSANTDKNSPTPQPTQEKRESC------------ 235

Query: 251 AAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK 310
                                S SD PTLAFPS+STSDF+F++EKA+++I+ KVEEF++K
Sbjct: 236 ------------------DKISQSDPPTLAFPSISTSDFKFSHEKAAEIIVGKVEEFMDK 277

Query: 311 LGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAA 370
           LGNARLVLVDL+ GSKILS+V+AKA +K+I+  KFFTFVGDIT+L + GGL CNVIANAA
Sbjct: 278 LGNARLVLVDLSHGSKILSMVKAKATEKNISSTKFFTFVGDITKLNSEGGLRCNVIANAA 337

Query: 371 NWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVI 430
           NWRLKPGGGGVNAAIFSAAG  LEVAT ++A SL PGN+V V LPSTSPL  REGVTHVI
Sbjct: 338 NWRLKPGGGGVNAAIFSAAGSGLEVATKQQANSLQPGNAVAVQLPSTSPLLNREGVTHVI 397

Query: 431 HVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPS 490
           HVLGPNMNP+RPN L+ DY +GC++L  AY+SLF+ F+SIV+ + K  KG +E +   P 
Sbjct: 398 HVLGPNMNPQRPNYLNNDYDEGCKLLGNAYSSLFQAFISIVQDKYKSVKGIHECLGSTPP 457

Query: 491 VSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             Q HSED H        K KR+     E+SKK K        +N          N    
Sbjct: 458 ELQKHSEDGH-------HKFKRENLQNLERSKKWKGSQNSTEGLN---------QNNNTV 501

Query: 551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDR 610
              SK WGSWAQALY TAM+PERH + +LE SDDVVVL D+YPKA+KH+LV++R +GLD+
Sbjct: 502 PKKSKHWGSWAQALYDTAMHPERHTNSVLETSDDVVVLYDIYPKARKHLLVVARHEGLDQ 561

Query: 611 LADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSK 670
           LADV  EHL +L+TMHA+G+KW  KF  ED  L FRLGYHSAPSMRQLHLHVISQDF+S 
Sbjct: 562 LADVCTEHLPLLRTMHAMGLKWINKFFREDGPLVFRLGYHSAPSMRQLHLHVISQDFDSS 621

Query: 671 HLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRL 730
           HLKNKKHWNSFNT FF DSV V+ E+S+HGKA + D +SL+SMELRC+RCRSAHP++P+L
Sbjct: 622 HLKNKKHWNSFNTDFFRDSVIVINEVSSHGKANIMDDESLMSMELRCNRCRSAHPNLPKL 681

Query: 731 KSHISSCRAPFPSSLLENGRLMLAPRN 757
           K+HIS C+APFPS+LLE GRL++ P N
Sbjct: 682 KAHISKCQAPFPSTLLEGGRLVVEPSN 708

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240948|ref|NP_195751.1| aprataxin [Arabidopsis thaliana] gi|75335734|sp|Q9M041.1|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcription factor bHLH140 gi|7320709|emb|CAB81914.1| putative protein [Arabidopsis thaliana] gi|332002943|gb|AED90326.1| aprataxin [Arabidopsis thaliana]

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/740 (59%), Positives = 543/740 (73%), Gaps = 54/740 (7%)

Query: 14  EEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS 73
           E  K KQI+V+++G PGSGKSTFC+  MRSS RPW+RICQD +N GK+GTK QCL  A+ 
Sbjct: 221 EADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATD 280

Query: 74  ALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ 133
           +L++GKSVF+DRCNL+REQR++F+KLGGPE +VHAVVL+LPA++CISRSVKR  HEGNLQ
Sbjct: 281 SLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPAQVCISRSVKRTGHEGNLQ 340

Query: 134 GGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQK 193
           GG+AAAVVN+MLQ KELPK++EGFSRI  C ++ DV  A++ Y+ LGP+DTLP G FG+K
Sbjct: 341 GGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNMYNKLGPMDTLPSGCFGEK 400

Query: 194 NPDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA 252
             D K Q GIMKF KKV A P+++ + A+              N+  +  E+T+      
Sbjct: 401 KLDTKSQPGIMKFFKKVSALPASSSNEAT--------------NTTRKADEMTA------ 440

Query: 253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG 312
                   N  V+ V + GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG
Sbjct: 441 --------NVRVSPV-KLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLG 491

Query: 313 NARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANW 372
            ARLVLVDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NW
Sbjct: 492 TARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW 551

Query: 373 RLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHV 432
           RLKPGGGGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHV
Sbjct: 552 RLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHV 611

Query: 433 LGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVS 492
           LGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K      R   +  
Sbjct: 612 LGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPK------RSSQTAV 665

Query: 493 QDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVS 552
            D  ED           IK D     E++KK K   +     NL   +    D    G  
Sbjct: 666 SDSGED-----------IKEDS----ERNKKYKGSQDKAVTNNLESES--LEDTRGSGKK 708

Query: 553 TSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612
            SK W +WA AL+  AM+PERH++ +LE  D++VV+ND YPKA+KH+LVL+R + LD L 
Sbjct: 709 MSKGWNTWALALHSIAMHPERHENVVLEYLDNIVVINDQYPKARKHVLVLARQESLDGLE 768

Query: 613 DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHL 672
           DVR E+LQ+LQ MH VG+KW ++F +EDASL FRLGYHS PSMRQLHLHVISQDFNS  L
Sbjct: 769 DVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFNSDSL 828

Query: 673 KNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRLKS 732
           KNKKHWNSF T+FF DSVDVLEE+++ GKA +   D LL  ELRC+RCRSAHP+IP+LKS
Sbjct: 829 KNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASED-LLKGELRCNRCRSAHPNIPKLKS 887

Query: 733 HISSCRAPFPSSLLENGRLM 752
           H+ SC + FP  LL+N RL+
Sbjct: 888 HVRSCHSQFPDHLLQNNRLV 907

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810265|ref|XP_002873016.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297318853|gb|EFH49275.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/757 (57%), Positives = 548/757 (72%), Gaps = 57/757 (7%)

Query: 2   DTDIDDTCKAKDEE-KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK 60
           D+D  +  + K EE +K KQI+V+++G PGS KSTFC+ VMRSS RPW+RICQD IN GK
Sbjct: 193 DSDHREKMEVKIEESEKAKQIVVLLIGPPGSCKSTFCDTVMRSSHRPWSRICQDIINNGK 252

Query: 61  SGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCIS 120
           +GTK QCL  A+ +L++GKSVF+DRCNL+REQR++F+KLGGP ++VHAVVL+L A++CIS
Sbjct: 253 AGTKAQCLKMATESLREGKSVFIDRCNLDREQRSEFIKLGGPGIEVHAVVLELSAQVCIS 312

Query: 121 RSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLG 180
           RSVKR  HEGNLQGG+AAAVVN+MLQ KELPK++EGFSRI  C N+ DV+ A +TY+ LG
Sbjct: 313 RSVKRTGHEGNLQGGRAAAVVNKMLQSKELPKVNEGFSRIMFCYNDADVENASNTYNKLG 372

Query: 181 PLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDA--PSNTGSTASSTQDPVPPQITEEKNSC 238
           P+D LP G FG+K  D K Q GIMKF KKV+A   S++   A++TQ+             
Sbjct: 373 PMDNLPSGCFGEKKSDTKSQPGIMKFFKKVNALPGSSSNEAANATQN------------- 419

Query: 239 LEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASD 298
                           + + T N  V+   + GS+  VPTLAFPS+ST+DFQF+ EKASD
Sbjct: 420 ----------------DNEKTRNVRVSPA-KLGSADIVPTLAFPSISTADFQFDLEKASD 462

Query: 299 VIIEKVEEFVNKLGNARLVLVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTG 358
           +I+EK EEF+ KLG ARLVLVDL+QGSKILSLV+AKAAQK+I+  +FFTFVGDIT+L + 
Sbjct: 463 IIVEKAEEFLPKLGTARLVLVDLSQGSKILSLVKAKAAQKNIDSARFFTFVGDITKLRSE 522

Query: 359 GGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTS 418
           GGL CNVIANA NWRLKPGGGGVNAAIF AAGP LE AT  RA +L PG + +VPLPST 
Sbjct: 523 GGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLEAATRVRANTLLPGKAAVVPLPSTC 582

Query: 419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLS 478
           PL   EG+THVIHVLGPNMNP RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL 
Sbjct: 583 PLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLP 642

Query: 479 KGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSR 538
           K  N+                      +G+ IK D     E++KK K   +     NL  
Sbjct: 643 KRSNQTA-----------------LSDSGEDIKEDS----ERNKKYKGSQDKAVTNNLES 681

Query: 539 AANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKH 598
            +    D    G   SK W +WA AL+  AM+PERH++ +LE SD++VV+ND YPKA+KH
Sbjct: 682 GS--LEDTRDSGKKMSKGWSTWALALHSIAMHPERHENVVLEFSDNIVVINDQYPKARKH 739

Query: 599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
           +LVL+R + LD L DVR E+LQ+LQ MH VG+KW ++F +EDASL FRLGYHS PSMRQL
Sbjct: 740 VLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQL 799

Query: 659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCH 718
           HLHVISQDF+S  LKNKKHWNSF ++FF DSVDVLEE+ + GKA +   D LL  ELRC+
Sbjct: 800 HLHVISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASED-LLKGELRCN 858

Query: 719 RCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAP 755
           RCRSAHP+IP+LKSH+ +CR+ FP  LL+N RL+  P
Sbjct: 859 RCRSAHPNIPKLKSHVRNCRSQFPDHLLQNNRLVARP 895

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	761
TAIR|locus:2179122	912	APTX "APRATAXIN-like" [Arabido	0.325	0.271	0.648	2e-230
MGI|MGI:1913658	342	Aptx "aprataxin" [Mus musculus	0.244	0.543	0.451	3.8e-39
UNIPROTKB|F1SE72	342	APTX "Aprataxin" [Sus scrofa (	0.307	0.684	0.4	9.8e-38
RGD|628740	329	Aptx "aprataxin" [Rattus norve	0.265	0.613	0.432	1.3e-37
UNIPROTKB|F1LMH1	331	Aptx "Aprataxin" [Rattus norve	0.265	0.610	0.432	1.3e-37
UNIPROTKB|Q8K4H4	329	Aptx "Aprataxin" [Rattus norve	0.265	0.613	0.432	1.3e-37
UNIPROTKB|P61797	342	APTX "Aprataxin" [Canis lupus	0.278	0.619	0.417	1.6e-37
UNIPROTKB|F1PHH9	352	APTX "Aprataxin" [Canis lupus	0.278	0.602	0.417	2.7e-37
UNIPROTKB|J9P6H4	342	APTX "Aprataxin" [Canis lupus	0.278	0.619	0.417	2.7e-37
UNIPROTKB|Q7YRZ1	356	APTX "Aprataxin" [Sus scrofa (	0.307	0.657	0.395	3.4e-37

TAIR|locus:2179122 APTX "APRATAXIN-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 2.0e-230, Sum P(3) = 2.0e-230
 Identities = 164/253 (64%), Positives = 196/253 (77%)

Query:   259 TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVL 318
             T N  V+ V   GS+  VPTLAFPS+ST+DFQF+ EKASD+I+EK EEF++KLG ARLVL
Sbjct:   439 TANVRVSPVKL-GSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLGTARLVL 497

Query:   319 VDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG 378
             VDL++GSKILSLV+AKA+QK+I+  KFFTFVGDIT+L + GGL CNVIANA NWRLKPGG
Sbjct:   498 VDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGG 557

Query:   379 GGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMN 438
             GGVNAAIF AAGP LE AT  RA +L PG +V+VPLPST PL   EG+THVIHVLGPNMN
Sbjct:   558 GGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMN 617

Query:   439 PRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSED 498
             P RP+ L+ DY KGC+ LR+AYTSLFEGFLS+V+ Q KL K  ++   +  S  +D  ED
Sbjct:   618 PNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPKRSSQTA-VSDS-GEDIKED 675

Query:   499 VHGN--YISTGDK 509
                N  Y  + DK
Sbjct:   676 SERNKKYKGSQDK 688

GO:0003824 "catalytic activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006790 "sulfur compound metabolic process" evidence=IDA

GO:0009150 "purine ribonucleotide metabolic process" evidence=IDA

GO:0047627 "adenylylsulfatase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

MGI|MGI:1913658 Aptx "aprataxin" [Mus musculus (taxid:10090)]

 Score = 412 (150.1 bits), Expect = 3.8e-39, Sum P(2) = 3.8e-39
 Identities = 89/197 (45%), Positives = 124/197 (62%)

Query:   541 NLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI--SDDVVVLNDLYPKAQKH 598
             ++S   +K G +  ++ G W+Q L + +M     KD  +++   D VVV+ D YPKA+ H
Sbjct:   148 SVSPKKDKNGATKKESLGHWSQGL-KMSM-----KDPKMQVYKDDQVVVIKDKYPKARHH 201

Query:   599 ILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQL 658
              LVL  +  +  L  V +EHL++L+ MHAVG K    F    + L FRLGYH+ PSM  +
Sbjct:   202 WLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFAGS-SKLRFRLGYHAIPSMSHV 259

Query:   659 HLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYD-SLLSMELRC 717
             HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G+ T+KD    LL + LRC
Sbjct:   260 HLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELLKLPLRC 319

Query:   718 HRCRSAHPSIPRLKSHI 734
             H C+   PSIP+LK H+
Sbjct:   320 HECQQLLPSIPQLKEHL 336

GO:0000012 "single strand break repair" evidence=ISO;IMP

GO:0000785 "chromatin" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0003684 "damaged DNA binding" evidence=ISO

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003725 "double-stranded RNA binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO;TAS

GO:0005730 "nucleolus" evidence=ISO

GO:0006266 "DNA ligation" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006302 "double-strand break repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008967 "phosphoglycolate phosphatase activity" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=ISO

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=ISO;IMP

GO:0042542 "response to hydrogen peroxide" evidence=ISO

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=TAS

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0051219 "phosphoprotein binding" evidence=ISO

UNIPROTKB|F1SE72 APTX "Aprataxin" [Sus scrofa (taxid:9823)]

 Score = 412 (150.1 bits), Expect = 9.8e-38, P = 9.8e-38
 Identities = 98/245 (40%), Positives = 137/245 (55%)

Query:   494 DHSEDVHGNYISTGDKIKRDGGH---EYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             +  E+     + T  K KR G     E + S++ K         N S+ + + A  EK  
Sbjct:    99 EFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSNPSQCS-VPAKKEKDA 157

Query:   551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDR 610
              +  ++   W+Q L + +M  E  K  + +  D VVV+ D YPKA+ H LVL  +  +  
Sbjct:   158 ATKKESLSHWSQGL-KISM--EDPKMQVYK-DDQVVVIKDKYPKARYHWLVLP-WASISS 212

Query:   611 LADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSK 670
             L  V  EHL++L+ MH VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S 
Sbjct:   213 LKAVTREHLELLRHMHTVGEKVIADFAGS-SKLRFRLGYHAIPSMSHVHLHVISQDFDSP 271

Query:   671 HLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPR 729
              LKNKKHWNSFNT +F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+
Sbjct:   272 CLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQ 331

Query:   730 LKSHI 734
             LK H+
Sbjct:   332 LKEHL 336

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0008967 "phosphoglycolate phosphatase activity" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0006266 "DNA ligation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000012 "single strand break repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|628740 Aptx "aprataxin" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 93/215 (43%), Positives = 131/215 (60%)

Query:   524 CKTQNEVGTDINLSRA-ANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI- 581
             C +Q E+  +   S +  ++S    K G +  ++ G W+Q L + +M     KD  +++ 
Sbjct:   118 CDSQ-EMEAEAGASPSQCSVSPKTGKHGAAKEESLGHWSQGL-KISM-----KDPKMQVY 170

Query:   582 -SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED 640
               D VVV+ D YPKA+ H LVL  +  +  L  V +EHL++L+ MHAVG K    F    
Sbjct:   171 KDDQVVVIKDKYPKARHHWLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFTGS- 228

Query:   641 ASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG 700
             + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G
Sbjct:   229 SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAG 288

Query:   701 KATLKDYD-SLLSMELRCHRCRSAHPSIPRLKSHI 734
             + T+KD    LL + LRCH C+   PSIP+LK H+
Sbjct:   289 RVTVKDGTCELLKLPLRCHECQQLLPSIPQLKEHL 323

GO:0000012 "single strand break repair" evidence=IEA;ISO

GO:0000785 "chromatin" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003684 "damaged DNA binding" evidence=IEA;ISO

GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005654 "nucleoplasm" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006266 "DNA ligation" evidence=IEA;ISO

GO:0006302 "double-strand break repair" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008967 "phosphoglycolate phosphatase activity" evidence=IEA;ISO

GO:0031647 "regulation of protein stability" evidence=IEA;ISO

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=IEA;ISO

GO:0042542 "response to hydrogen peroxide" evidence=IEA;ISO

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0051219 "phosphoprotein binding" evidence=IEA;ISO

UNIPROTKB|F1LMH1 Aptx "Aprataxin" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 93/215 (43%), Positives = 131/215 (60%)

Query:   524 CKTQNEVGTDINLSRA-ANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI- 581
             C +Q E+  +   S +  ++S    K G +  ++ G W+Q L + +M     KD  +++ 
Sbjct:   120 CDSQ-EMEAEAGASPSQCSVSPKTGKHGAAKEESLGHWSQGL-KISM-----KDPKMQVY 172

Query:   582 -SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED 640
               D VVV+ D YPKA+ H LVL  +  +  L  V +EHL++L+ MHAVG K    F    
Sbjct:   173 KDDQVVVIKDKYPKARHHWLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFTGS- 230

Query:   641 ASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG 700
             + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G
Sbjct:   231 SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAG 290

Query:   701 KATLKDYD-SLLSMELRCHRCRSAHPSIPRLKSHI 734
             + T+KD    LL + LRCH C+   PSIP+LK H+
Sbjct:   291 RVTVKDGTCELLKLPLRCHECQQLLPSIPQLKEHL 325

GO:0000012 "single strand break repair" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006266 "DNA ligation" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008967 "phosphoglycolate phosphatase activity" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|Q8K4H4 Aptx "Aprataxin" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 93/215 (43%), Positives = 131/215 (60%)

Query:   524 CKTQNEVGTDINLSRA-ANLSADNEKIGVSTSKAWGSWAQALYRTAMYPERHKDDLLEI- 581
             C +Q E+  +   S +  ++S    K G +  ++ G W+Q L + +M     KD  +++ 
Sbjct:   118 CDSQ-EMEAEAGASPSQCSVSPKTGKHGAAKEESLGHWSQGL-KISM-----KDPKMQVY 170

Query:   582 -SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED 640
               D VVV+ D YPKA+ H LVL  +  +  L  V +EHL++L+ MHAVG K    F    
Sbjct:   171 KDDQVVVIKDKYPKARHHWLVLP-WASISSLKVVTSEHLELLKHMHAVGEKVIADFTGS- 228

Query:   641 ASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG 700
             + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +F +S  V++ +   G
Sbjct:   229 SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAG 288

Query:   701 KATLKDYD-SLLSMELRCHRCRSAHPSIPRLKSHI 734
             + T+KD    LL + LRCH C+   PSIP+LK H+
Sbjct:   289 RVTVKDGTCELLKLPLRCHECQQLLPSIPQLKEHL 323

GO:0000012 "single strand break repair" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0006266 "DNA ligation" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008967 "phosphoglycolate phosphatase activity" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|P61797 APTX "Aprataxin" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 96/230 (41%), Positives = 133/230 (57%)

Query:   508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
             D I+RD   E E S    T  E G+D   S   ++  +  K   +  ++ G W+Q L  +
Sbjct:   122 DSIERDAAQEAESS----TGLEPGSD---SSQCSVPLNKGKDAPTKKESLGHWSQGLKIS 174

Query:   568 AMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
                P+   +KD+       VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ M
Sbjct:   175 MQDPKMQVYKDE------QVVVIKDKYPKARYHWLVLP-WASVSSLKAVTGEHLELLKHM 227

Query:   626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
             H VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +
Sbjct:   228 HTVGEKMIADFAGS-SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 286

Query:   686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
             F +S  V+E + + G+ +++D    LL + LRCH C+   PSIP+LK H+
Sbjct:   287 FLESQAVIEMVQHAGRVSVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 336

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PHH9 APTX "Aprataxin" [Canis lupus familiaris (taxid:9615)]

 Score = 408 (148.7 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 96/230 (41%), Positives = 132/230 (57%)

Query:   508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
             D I+RD   E E S    T  E G+D   S   ++     K   +  ++ G W+Q L  +
Sbjct:   132 DSIERDAAQEAESS----TGLEPGSD---SSQCSVPLKKGKDAPTKKESLGHWSQGLKIS 184

Query:   568 AMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
                P+   +KD+       VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ M
Sbjct:   185 MQDPKMQVYKDE------QVVVIKDKYPKARYHWLVLP-WASVSSLKAVTGEHLELLKHM 237

Query:   626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
             H VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +
Sbjct:   238 HTVGEKMIADFAGS-SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 296

Query:   686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
             F +S  V+E + + G+ +++D    LL + LRCH C+   PSIP+LK H+
Sbjct:   297 FLESQAVIEMVQHAGRVSVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 346

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|J9P6H4 APTX "Aprataxin" [Canis lupus familiaris (taxid:9615)]

 Score = 408 (148.7 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 96/230 (41%), Positives = 132/230 (57%)

Query:   508 DKIKRDGGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRT 567
             D I+RD   E E S    T  E G+D   S   ++     K   +  ++ G W+Q L  +
Sbjct:   122 DSIERDAAQEAESS----TGLEPGSD---SSQCSVPLKKGKDAPTKKESLGHWSQGLKIS 174

Query:   568 AMYPER--HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTM 625
                P+   +KD+       VVV+ D YPKA+ H LVL  +  +  L  V  EHL++L+ M
Sbjct:   175 MQDPKMQVYKDE------QVVVIKDKYPKARYHWLVLP-WASVSSLKAVTGEHLELLKHM 227

Query:   626 HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAF 685
             H VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S  LKNKKHWNSFNT +
Sbjct:   228 HTVGEKMIADFAGS-SKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY 286

Query:   686 FCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPRLKSHI 734
             F +S  V+E + + G+ +++D    LL + LRCH C+   PSIP+LK H+
Sbjct:   287 FLESQAVIEMVQHAGRVSVRDGMPELLKLPLRCHECQQLLPSIPQLKEHL 336

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q7YRZ1 APTX "Aprataxin" [Sus scrofa (taxid:9823)]

 Score = 407 (148.3 bits), Expect = 3.4e-37, P = 3.4e-37
 Identities = 97/245 (39%), Positives = 136/245 (55%)

Query:   494 DHSEDVHGNYISTGDKIKRDGGH---EYEQSKKCKTQNEVGTDINLSRAANLSADNEKIG 550
             +  E+     + T  K KR G     E + S++ K         N S+ + +    EK  
Sbjct:   113 EFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSNPSQCS-VPPKKEKDA 171

Query:   551 VSTSKAWGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDR 610
              +  ++   W+Q L + +M  E  K  + +  D VVV+ D YPKA+ H LVL  +  +  
Sbjct:   172 ATKKESLSHWSQGL-KISM--EDPKMQVYK-DDQVVVIKDKYPKARYHWLVLP-WASISS 226

Query:   611 LADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSK 670
             L  V  EHL++L+ MH VG K    F    + L FRLGYH+ PSM  +HLHVISQDF+S 
Sbjct:   227 LKAVTREHLELLRHMHTVGEKVIADFAGS-SKLRFRLGYHAIPSMSHVHLHVISQDFDSP 285

Query:   671 HLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKD-YDSLLSMELRCHRCRSAHPSIPR 729
              LKNKKHWNSFNT +F +S  V+E +   G+ T++D    LL + LRCH C+   PSIP+
Sbjct:   286 CLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQ 345

Query:   730 LKSHI 734
             LK H+
Sbjct:   346 LKEHL 350

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M041	BH140_ARATH	No assigned EC number	0.5918	0.9014	0.7521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	761
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-27
pfam11969	113	pfam11969, DcpS_C, Scavenger mRNA decapping enzyme	1e-24
cd01278	104	cd01278, aprataxin_related, aprataxin related: Apr	1e-16
cd02908	165	cd02908, Macro_Appr_pase_like, Macro domain, Appr-	2e-11
TIGR01663	526	TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'	6e-10
smart00506	133	smart00506, A1pp, Appr-1"-p processing enzyme	1e-09
pfam01661	117	pfam01661, Macro, Macro domain	2e-09
COG2110	179	COG2110, COG2110, Predicted phosphatase homologous	3e-09
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	2e-08
PRK00431	177	PRK00431, PRK00431, RNase III inhibitor; Provision	3e-08
TIGR04075	851	TIGR04075, bacter_Pnkp, polynucleotide kinase-phos	7e-08
cd02907	175	cd02907, Macro_Af1521_BAL_like, Macro domain, Af15	1e-07
cd02749	147	cd02749, Macro, Macro domain, a high-affinity ADP-	3e-07
cd02903	137	cd02903, Macro_BAL_like, Macro domain, BAL_like fa	9e-07
pfam01230	97	pfam01230, HIT, HIT domain	6e-06
cd01276	104	cd01276, PKCI_related, Protein Kinase C Interactin	0.004

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score =  108 bits (272), Expect = 1e-27
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------Q 66
           L++MVG PGSGKSTF   ++R        +  DT+ K   G                  +
Sbjct: 1   LILMVGLPGSGKSTFARRLLR--ELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQR 58

Query: 67  CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKR 125
            L  A  AL+ G+ V +D  NL RE+R   + L       V  V L+ P ++   R+ +R
Sbjct: 59  LLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQR 118

Query: 126 IEHEGNLQGGKAAAVVNRMLQKKELP 151
            E  G        AV++RML + E P
Sbjct: 119 -ERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 582 SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA 641
            D  V   D+ PKA  H+LV+ +   +  L D+  EHL +L  M  V  K A++  +E  
Sbjct: 20  DDGFVAFKDIKPKAPLHLLVIPK-KHIKSLRDLTKEHLPLLGHMREVAKKIAKEKYNEGY 78

Query: 642 SLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKH 677
               RLG+H  PS+  LHLHVI+ DF    L  K  
Sbjct: 79  RDVLRLGFHYGPSVYHLHLHVIAPDFEP-GLGRKLG 113

This family consists of several scavenger mRNA decapping enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger pyrophosphatase that hydrolyses the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. The C-terminal domain contains a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. The central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function. Length = 113

>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 8/93 (8%)

Query: 576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEK 635
           +D +   D VVV  D+YPKA+ H LV+ + + +  L  +  E + +L+ M  VG    EK
Sbjct: 16  EDQVYEDDRVVVFKDIYPKARHHYLVIPK-EHIASLKALTKEDVPLLEHMETVGR---EK 71

Query: 636 FLHEDAS--LAFRLGYHSAP--SMRQLHLHVIS 664
            L  D +    FR G+H+ P  S+  LHLHVI+
Sbjct: 72  LLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVIA 104

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin. Length = 104

>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 34/92 (36%), Positives = 41/92 (44%), Gaps = 21/92 (22%)

Query: 348 FVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPG 407
             GDIT+L        + I NAAN  L  GGGGV+ AI  AAGP L     E       G
Sbjct: 5   IQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECRELRGCP-TG 56

Query: 408 NSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
            +VI     LP+           +VIH +GP 
Sbjct: 57  EAVITSGYNLPA----------KYVIHTVGPV 78

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165

>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase

 Score = 62.0 bits (150), Expect = 6e-10
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +VI VG PG+GKS FC+   +     +  +  DT+     G+   CLT+   AL +GK  
Sbjct: 371 MVIAVGFPGAGKSHFCKKFFQP--AGYKHVNADTL-----GSTQNCLTACERALDQGKRC 423

Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  F++       +        A L  ++         +    K   +V
Sbjct: 424 AIDNTNPDAASRAKFLQCAR-AAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMV 482

Query: 142 NRMLQKK-ELPKLSEGFSRI 160
              ++KK E P L+EGF  I
Sbjct: 483 FNGMKKKFEAPALAEGFIAI 502

This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog, GP|7108591, appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78. Length = 526

>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA--TAERA 401
                 GDIT+         + I NAAN      GGGV  AI  AAG AL          
Sbjct: 1   ILKVVKGDITKPR------ADAIVNAANSDGAH-GGGVAGAIARAAGKALSKEEVRKLAG 53

Query: 402 KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC-EILRKAY 460
                G +V+          G     +VIH +GP             + K   E+L  AY
Sbjct: 54  GECPVGTAVVTE-------GGNLPAKYVIHAVGPR---------ASGHSKEGFELLENAY 97

Query: 461 TSLFE 465
            +  E
Sbjct: 98  RNCLE 102

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji). Length = 133

>gnl|CDD|216634 pfam01661, Macro, Macro domain

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAE--RAKSLYPGNSVIVPLPSTSPLCGRE 424
            NAAN  L  GGGGV  AI  AAGPAL     E  +      G +V+ P        G  
Sbjct: 1   VNAANSSLL-GGGGVAGAIHRAAGPALLEECRELKKQGGCPTGEAVVTP-------GGNL 52

Query: 425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
              +VIH +GP           G   +  E+L  AY +  E
Sbjct: 53  PAKYVIHAVGPIWR-------HGGGEEEEELLASAYRNALE 86

This domain is an ADP-ribose binding module. It is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein. This domain is found in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alphaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria, and eukaryotes. Length = 117

>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        + I NAAN +L  GGGGV  AI  AAGP LE   AE A     G  
Sbjct: 10  GDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRI 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGP 435
            +     T    GR    +VIH +GP
Sbjct: 63  PVGEAVITEA--GRLPAKYVIHTVGP 86

Length = 179

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 21  ILVIMVGAPGSGKSTFCE------HVMRSSA--RPWARICQDTINKGKSGTKVQCL-TSA 71
           ILV++ GA GSGKSTF +      +V+                 ++         L    
Sbjct: 3   ILVVLRGASGSGKSTFAKENFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQL 62

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRSVKRIEHEG 130
              L++GK   +D  NL RE R   + L       ++A+V D P +LC++R+  R     
Sbjct: 63  EQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQ-- 120

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGF 157
                    V+ RML++       E F
Sbjct: 121 -----VPEEVIPRMLRETIDLLEKEPF 142

Length = 168

>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 42/114 (36%), Positives = 49/114 (42%), Gaps = 25/114 (21%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA-LEVATAERAK--SLYP 406
           GDIT L        + I NAAN  L  GGGGV+ AI  AAGP  LE     R +      
Sbjct: 10  GDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPT 62

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAY 460
           G +VI     TS   GR    +VIH +GP    R             E+L  AY
Sbjct: 63  GEAVI-----TSA--GRLPAKYVIHTVGPVW--RGGED------NEAELLASAY 101

Length = 177

>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 22  LVIMVGAPGSGKSTFC-EHVMR----SSARPWARICQDTINKGKSGTKVQCL-TSASSAL 75
           LV++VGA GSGKSTF  +H       SS      +  D  ++  S      L   A   L
Sbjct: 10  LVVLVGASGSGKSTFARKHFKPTEVLSSDFCRGLVSDDENDQSASSDAFDVLYYIAGKRL 69

Query: 76  KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH--AVVLDLPAKLCISRSVKRIEHEGNLQ 133
            +G    +D  N++ E R   V L   E  V   A+VLDLP K+C+ R+  R     +  
Sbjct: 70  ARGLLTVIDATNVQPEDRKGLVALA-REYHVLPVAIVLDLPEKVCLERNAAR----PDRD 124

Query: 134 GGKAAAVVNRMLQ--KKELPKLS-EGFSRITLCQNENDVQAA 172
            G    VV R  Q  ++ L  L  EGF ++ + ++  +V AA
Sbjct: 125 FG--PHVVRRQHQELRRSLKGLKREGFRKVHVLRSPEEVDAA 164

Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring [Transcription, RNA processing]. Length = 851

>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 27/119 (22%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GDITR         + I NAAN  LK  GGG+  AI  A GP ++  + E   +   +  
Sbjct: 9   GDITRFPV------DAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPT 61

Query: 407 GNSVIVPLPSTSPLCGREGVTHVIHVLGP-NMNPRRPNCLDGDYVKGCEILRKA-YTSL 463
           G  V+     TS   G+    +VIH +GP         C         E L+KA   SL
Sbjct: 62  GEVVV-----TSA--GKLPCKYVIHAVGPRWSGGEAEEC--------VEKLKKAILNSL 105

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains of BAL (B-aggressive lymphoma) proteins which contain multiple macro domains. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 175

>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY--PG 407
           GDIT+         + I NAAN   +  GGGVN AI   AG  LE  + +  K L    G
Sbjct: 7   GDITKPLG-----SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVG 60

Query: 408 NSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLF 464
            +V+            +G  ++IH++GP  N        G+     E+L+ AY +  
Sbjct: 61  EAVLT------KGYNLDGAKYLIHIVGPKYN-------QGNNKAAFELLKNAYENCL 104

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Length = 147

>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDI    T      +VI N+ N  L    GGV+ AI   AGP L+    +       G S
Sbjct: 8   GDIEDETT------DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVG-S 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGC--EILRKAYTSL 463
           VIV    T    G     +V HV+ PN +      L  D V  C  +    +YTS+
Sbjct: 61  VIV----TKG--GNLPCKYVYHVVLPNWSNGALKIL-KDIVSECLEKCEELSYTSI 109

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 137

>gnl|CDD|216377 pfam01230, HIT, HIT domain

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS 642
           D V+   D+ P+A  H+LV+ +   +  L D+  E    L  + +   K A   L +  +
Sbjct: 13  DLVLAFLDIDPQAPGHVLVIPK-KHITELHDLTPE---ELGDLMSEAKKVARA-LGKAKA 67

Query: 643 LAFRL----GYHSAPSMRQLHLHVISQDFN 668
             +R+    G  +  S+  LH+HVI +   
Sbjct: 68  DGYRIVINNGAAAGQSVPHLHIHVIPRREG 97

Length = 97

>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHEDA 641
           D+V+  +D+ P+A  HILV+ +   +  L+D   E  ++L  + +   K A+   + ED 
Sbjct: 21  DEVLAFHDINPQAPVHILVIPKKH-IASLSDATEEDEELLGHLLSAAAKVAKDLGIAED- 78

Query: 642 SLAFRL----GYHSAPSMRQLHLHVIS 664
              +RL    G      +  LHLH++ 
Sbjct: 79  --GYRLVINCGKDGGQEVFHLHLHLLG 103

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	761
KOG0562	184	consensus Predicted hydrolase (HIT family) [Genera	100.0
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.95
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.94
PF11969	116	DcpS_C: Scavenger mRNA decapping enzyme C-term bin	99.94
PRK04143	264	hypothetical protein; Provisional	99.92
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.91
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.9
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.89
PRK00431	177	RNase III inhibitor; Provisional	99.88
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.88
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.87
KOG4359	166	consensus Protein kinase C inhibitor-like protein	99.84
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	99.83
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.79
COG4639	168	Predicted kinase [General function prediction only	99.74
KOG3275	127	consensus Zinc-binding protein of the histidine tr	99.74
PRK10687	119	purine nucleoside phosphoramidase; Provisional	99.73
cd01278	104	aprataxin_related aprataxin related: Aprataxin, a	99.72
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.71
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	99.71
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	99.7
cd01276	104	PKCI_related Protein Kinase C Interacting protein	99.67
COG0537	138	Hit Diadenosine tetraphosphate (Ap4A) hydrolase an	99.66
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	99.66
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	99.64
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	99.62
PRK13341	725	recombination factor protein RarA/unknown domain f	99.61
PRK06762	166	hypothetical protein; Provisional	99.6
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	99.59
PHA02530	300	pseT polynucleotide kinase; Provisional	99.59
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.58
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.57
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.55
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.51
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	99.49
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.47
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.46
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.46
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	99.44
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	99.42
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	99.41
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.37
PRK04143	264	hypothetical protein; Provisional	99.36
PRK14527	191	adenylate kinase; Provisional	99.36
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.35
PRK14531	183	adenylate kinase; Provisional	99.34
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.31
PRK14532	188	adenylate kinase; Provisional	99.3
COG0645	170	Predicted kinase [General function prediction only	99.29
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	99.28
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	99.27
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.26
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.22
PLN02674	244	adenylate kinase	99.21
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.21
PRK00279	215	adk adenylate kinase; Reviewed	99.2
PLN02200	234	adenylate kinase family protein	99.2
PRK09825	176	idnK D-gluconate kinase; Provisional	99.19
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	99.19
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.19
PRK11545	163	gntK gluconate kinase 1; Provisional	99.18
PRK13808	333	adenylate kinase; Provisional	99.15
PRK14529	223	adenylate kinase; Provisional	99.15
PRK14530	215	adenylate kinase; Provisional	99.14
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	99.14
PRK14528	186	adenylate kinase; Provisional	99.14
TIGR00209	347	galT_1 galactose-1-phosphate uridylyltransferase,	99.13
KOG3379	150	consensus Diadenosine polyphosphate hydrolase and	99.13
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.11
PRK02496	184	adk adenylate kinase; Provisional	99.11
PRK11720	346	galactose-1-phosphate uridylyltransferase; Provisi	99.1
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.09
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.09
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.08
PRK06217	183	hypothetical protein; Validated	99.08
PLN02459	261	probable adenylate kinase	99.07
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.06
PRK14526	211	adenylate kinase; Provisional	99.04
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.03
PTZ00088	229	adenylate kinase 1; Provisional	99.03
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.02
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.01
PRK08118	167	topology modulation protein; Reviewed	99.0
PRK07261	171	topology modulation protein; Provisional	99.0
KOG3062	281	consensus RNA polymerase II elongator associated p	98.98
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.97
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.97
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.96
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	98.94
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.94
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.91
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.9
PRK14737	186	gmk guanylate kinase; Provisional	98.9
PRK00431	177	RNase III inhibitor; Provisional	98.9
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.86
PRK06547	172	hypothetical protein; Provisional	98.85
PRK13946	184	shikimate kinase; Provisional	98.84
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.84
KOG3969	310	consensus Uncharacterized conserved protein [Funct	98.84
PLN02643	336	ADP-glucose phosphorylase	98.83
PRK13948	182	shikimate kinase; Provisional	98.82
PRK03846	198	adenylylsulfate kinase; Provisional	98.81
PRK01184	184	hypothetical protein; Provisional	98.8
PRK05541	176	adenylylsulfate kinase; Provisional	98.8
PLN02842	505	nucleotide kinase	98.8
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.79
PRK00131	175	aroK shikimate kinase; Reviewed	98.79
PRK00625	173	shikimate kinase; Provisional	98.78
PRK13949	169	shikimate kinase; Provisional	98.77
PRK13947	171	shikimate kinase; Provisional	98.77
PRK00889	175	adenylylsulfate kinase; Provisional	98.77
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.75
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.74
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.73
PRK03839	180	putative kinase; Provisional	98.72
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.71
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.71
PRK05480	209	uridine/cytidine kinase; Provisional	98.7
PRK05057	172	aroK shikimate kinase I; Reviewed	98.7
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.69
PRK06696	223	uridine kinase; Validated	98.69
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.69
PRK08356	195	hypothetical protein; Provisional	98.68
COG2110	179	Predicted phosphatase homologous to the C-terminal	98.66
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.64
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.63
PRK14738	206	gmk guanylate kinase; Provisional	98.62
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.61
PTZ00301	210	uridine kinase; Provisional	98.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.59
PRK03731	171	aroL shikimate kinase II; Reviewed	98.56
PRK08233	182	hypothetical protein; Provisional	98.55
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.55
PRK00300	205	gmk guanylate kinase; Provisional	98.54
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.52
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.51
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	98.5
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.5
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.49
PRK04040	188	adenylate kinase; Provisional	98.49
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.47
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.47
PRK04182	180	cytidylate kinase; Provisional	98.46
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.44
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.43
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.43
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.43
PRK07667	193	uridine kinase; Provisional	98.42
PRK13975	196	thymidylate kinase; Provisional	98.42
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.42
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.4
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.39
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	98.38
PRK13973	213	thymidylate kinase; Provisional	98.37
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.37
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.37
PRK00698	205	tmk thymidylate kinase; Validated	98.35
PLN02348	395	phosphoribulokinase	98.34
PHA02595	154	tk.4 hypothetical protein; Provisional	98.32
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.32
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.31
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.29
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.29
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.28
PLN02422	232	dephospho-CoA kinase	98.27
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.26
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.25
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.24
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.23
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.23
PRK12338	319	hypothetical protein; Provisional	98.23
PLN02924	220	thymidylate kinase	98.22
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.18
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.18
PLN02199	303	shikimate kinase	98.17
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.16
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.16
PTZ00451	244	dephospho-CoA kinase; Provisional	98.15
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.14
COG3709	192	Uncharacterized component of phosphonate metabolis	98.11
PRK07429	327	phosphoribulokinase; Provisional	98.1
PLN02772	398	guanylate kinase	98.09
PRK15453	290	phosphoribulokinase; Provisional	98.07
PRK05439	311	pantothenate kinase; Provisional	98.06
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	98.04
COG5075	305	Uncharacterized conserved protein [Function unknow	98.03
PRK13341	725	recombination factor protein RarA/unknown domain f	98.02
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.99
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.96
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.93
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.93
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	97.91
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	97.9
PRK06761	282	hypothetical protein; Provisional	97.89
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.87
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.87
PLN02318	656	phosphoribulokinase/uridine kinase	97.84
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.84
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.81
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	97.79
PRK07933	213	thymidylate kinase; Validated	97.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.77
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.76
PF00004	132	AAA: ATPase family associated with various cellula	97.76
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.74
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.72
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.71
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.69
PRK13974	212	thymidylate kinase; Provisional	97.69
PHA00729	226	NTP-binding motif containing protein	97.67
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.59
PLN02165	334	adenylate isopentenyltransferase	97.58
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.53
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	97.53
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.5
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	97.49
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.48
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.38
PRK00023	225	cmk cytidylate kinase; Provisional	97.36
COG5324	758	Uncharacterized conserved protein [Function unknow	97.34
COG1085	338	GalT Galactose-1-phosphate uridylyltransferase [En	97.28
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.26
PLN02748	468	tRNA dimethylallyltransferase	97.21
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.2
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	97.18
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.17
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.17
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.15
PRK13976	209	thymidylate kinase; Provisional	97.12
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.1
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.09
smart00382	148	AAA ATPases associated with a variety of cellular	97.08
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.05
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.04
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	97.03
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.0
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.97
PRK09087	226	hypothetical protein; Validated	96.95
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.86
COG1660	286	Predicted P-loop-containing kinase [General functi	96.85
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.85
PF02744	166	GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf	96.84
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.79
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.79
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	96.77
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.75
PF04677	121	CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In	96.74
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.68
CHL00195	489	ycf46 Ycf46; Provisional	96.66
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.65
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	96.65
PRK10867	433	signal recognition particle protein; Provisional	96.64
PF13173	128	AAA_14: AAA domain	96.64
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.6
PRK14974	336	cell division protein FtsY; Provisional	96.56
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.53
PLN02840	421	tRNA dimethylallyltransferase	96.53
PHA02544	316	44 clamp loader, small subunit; Provisional	96.53
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.52
PF14519	280	Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ	96.49
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.47
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.46
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.46
TIGR00959	428	ffh signal recognition particle protein. This mode	96.46
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	96.44
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.44
KOG2720	431	consensus Predicted hydrolase (HIT family) [Genera	96.43
PHA03132	580	thymidine kinase; Provisional	96.42
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.42
PRK10416	318	signal recognition particle-docking protein FtsY;	96.4
PRK08084	235	DNA replication initiation factor; Provisional	96.4
PRK06620	214	hypothetical protein; Validated	96.35
KOG2958	354	consensus Galactose-1-phosphate uridylyltransferas	96.34
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.34
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.33
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.32
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.31
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.3
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.29
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	96.22
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.2
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.2
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.18
PRK12377	248	putative replication protein; Provisional	96.17
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.14
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.12
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.09
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.09
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.08
CHL00181	287	cbbX CbbX; Provisional	96.05
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.05
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.04
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.0
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.99
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	95.97
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.91
PRK13342	413	recombination factor protein RarA; Reviewed	95.88
PHA02244	383	ATPase-like protein	95.85
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.84
PRK04195	482	replication factor C large subunit; Provisional	95.82
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	95.81
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.81
PRK08116	268	hypothetical protein; Validated	95.8
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.73
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	95.73
PLN03103	403	GDP-L-galactose-hexose-1-phosphate guanyltransfera	95.72
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.66
PRK08727	233	hypothetical protein; Validated	95.66
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.63
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	95.61
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.59
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.58
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.56
KOG1533	290	consensus Predicted GTPase [General function predi	95.55
PRK06893	229	DNA replication initiation factor; Validated	95.54
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	95.54
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.49
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	95.48
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.48
PLN03046	460	D-glycerate 3-kinase; Provisional	95.46
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.45
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.37
PRK05642	234	DNA replication initiation factor; Validated	95.37
PRK07952	244	DNA replication protein DnaC; Validated	95.36
PRK04296	190	thymidine kinase; Provisional	95.36
PLN02796	347	D-glycerate 3-kinase	95.32
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.32
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	95.3
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.27
cd03331	152	Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam	95.27
CHL00176	638	ftsH cell division protein; Validated	95.27
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.25
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.25
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	95.24
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.2
PRK12402	337	replication factor C small subunit 2; Reviewed	95.18
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.16
PRK06921	266	hypothetical protein; Provisional	95.12
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.11
PLN03025	319	replication factor C subunit; Provisional	95.11
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.03
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.01
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	94.99
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	94.98
cd01394	218	radB RadB. The archaeal protein radB shares simila	94.98
PF05729	166	NACHT: NACHT domain	94.96
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	94.95
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	94.94
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	94.94
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	94.92
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	94.91
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	94.9
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.88
PRK08181	269	transposase; Validated	94.88
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	94.87
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	94.86
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	94.85
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	94.85
PRK09183	259	transposase/IS protein; Provisional	94.84
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	94.84
PRK12422	445	chromosomal replication initiation protein; Provis	94.84
PRK00440	319	rfc replication factor C small subunit; Reviewed	94.83
PRK00149	450	dnaA chromosomal replication initiation protein; R	94.82
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.81
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	94.8
PF13245	76	AAA_19: Part of AAA domain	94.79
PRK09435	332	membrane ATPase/protein kinase; Provisional	94.77
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.77
PRK06835	329	DNA replication protein DnaC; Validated	94.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.75
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	94.75
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	94.7
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.68
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	94.68
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	94.66
PRK06526	254	transposase; Provisional	94.65
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	94.65
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	94.65
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	94.64
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	94.63
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	94.63
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.63
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	94.62
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	94.62
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	94.6
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	94.6
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.58
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.58
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	94.56
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	94.55
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	94.51
PF07726	131	AAA_3: ATPase family associated with various cellu	94.5
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.5
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	94.48
PRK08099	399	bifunctional DNA-binding transcriptional repressor	94.45
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	94.42
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	94.41
PRK08533	230	flagellar accessory protein FlaH; Reviewed	94.37
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.37
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.34
COG1855	604	ATPase (PilT family) [General function prediction	94.34
PTZ00202	550	tuzin; Provisional	94.33
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.32
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.32
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	94.28
PRK14086	617	dnaA chromosomal replication initiation protein; P	94.26
PRK04328	249	hypothetical protein; Provisional	94.25
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.24
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.23
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.22
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	94.2
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	94.17
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	94.13
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	94.12
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.1
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.1
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.09
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	94.08
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	94.07
PRK09169	2316	hypothetical protein; Validated	94.04
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	94.02
cd00983	325	recA RecA is a bacterial enzyme which has roles in	94.0
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	94.0
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	93.98
COG4240	300	Predicted kinase [General function prediction only	93.98
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	93.98
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	93.95
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.92
PRK13768	253	GTPase; Provisional	93.91
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	93.9
TIGR00672	250	cdh CDP-diacylglycerol pyrophosphatase, bacterial	93.89
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	93.88
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	93.85
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	93.84
PRK05471	252	CDP-diacylglycerol pyrophosphatase; Provisional	93.8
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.79
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	93.77
PRK14088	440	dnaA chromosomal replication initiation protein; P	93.7
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	93.66
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	93.66
PF13479	213	AAA_24: AAA domain	93.65
CHL00206	2281	ycf2 Ycf2; Provisional	93.63
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	93.6
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	93.6
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	93.57
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	93.54
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	93.53
PF02611	222	CDH: CDP-diacylglycerol pyrophosphatase; InterPro:	93.53
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	93.47
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.46
PRK08939	306	primosomal protein DnaI; Reviewed	93.46
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	93.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.45
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.44
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	93.43
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	93.42
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	93.38
PRK00411	394	cdc6 cell division control protein 6; Reviewed	93.38
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.37
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.37
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.34
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	93.33
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	93.29
KOG1534	273	consensus Putative transcription factor FET5 [Tran	93.27
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	93.25
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	93.23
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	93.22
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	93.18
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	93.15
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	93.15
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	93.14
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	93.11
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	93.09
PRK00089	292	era GTPase Era; Reviewed	93.02
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	93.01
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	92.99
PRK15455	644	PrkA family serine protein kinase; Provisional	92.96
cd03114	148	ArgK-like The function of this protein family is u	92.92
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	92.83
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	92.82
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	92.82
TIGR02237	209	recomb_radB DNA repair and recombination protein R	92.8
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	92.79
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	92.78
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	92.76
PRK06067	234	flagellar accessory protein FlaH; Validated	92.74
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	92.73
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.73
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	92.72
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	92.71
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	92.67
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	92.66
PRK05564	313	DNA polymerase III subunit delta'; Validated	92.64
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	92.59
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	92.52
PRK10646	153	ADP-binding protein; Provisional	92.49

>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]

Probab=100.00  E-value=2.4e-47  Score=359.59  Aligned_cols=181  Identities=46%  Similarity=0.754  Sum_probs=162.1

Q ss_pred             hhHHHHHhhhcCCCCCCCcEEEEc-CcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhh
Q 004319          559 SWAQALYRTAMYPERHKDDLLEIS-DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFL  637 (761)
Q Consensus       559 ~w~~~L~~~~~~Pe~~p~~vvyed-d~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~  637 (761)
                      +|+.++..++..||.    |+.+. |++|+|+|.||||+.|+||+||...|+++.++..+++.+|.+|..++..|.....
T Consensus         2 sw~~~i~~~i~k~e~----V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~   77 (184)
T KOG0562|consen    2 SWHEAIVMDIPKPEN----VYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLT   77 (184)
T ss_pred             chhhhhhhcCCccce----eeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhc
Confidence            688777766666665    55555 7999999999999999999997678999999999999999999999999998876


Q ss_pred             ccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCCCCccchhhhccCCccc
Q 004319          638 HEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRC  717 (761)
Q Consensus       638 ~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~~~~~~~~~~l~~~l~C  717 (761)
                      .++....|++||||+|||.||||||||+||+|++||||||||||||+||++++++.+++.+.|+.+..... ||+.||+|
T Consensus        78 ~~~~~~~f~vG~HavPSM~~LHLHVISkDf~S~sLKNKKHwnSFnT~fFv~~~~~~~~~~~~G~~t~~~~~-llk~dLrC  156 (184)
T KOG0562|consen   78 NEALCNYFRVGFHAVPSMNNLHLHVISKDFVSPSLKNKKHWNSFNTEFFVKSDDVTENVPTRGTATVLFTT-LLKEDLRC  156 (184)
T ss_pred             chhhhhheeeeeccCcchhheeEEEeecccCCchhccchhhcccCccceeeccchhhhhhccccchhhhhh-hhccceee
Confidence            66666789999999999999999999999999999999999999999999999999999999998765544 99999999


Q ss_pred             ccCCCCCCChHHHHHHHhhcCCCCCcc
Q 004319          718 HRCRSAHPSIPRLKSHISSCRAPFPSS  744 (761)
Q Consensus       718 ~~C~~~~~n~~~LK~Hl~~~~~~~~~~  744 (761)
                      |||+..-++||+||+||+.|-..+|.+
T Consensus       157 ~~Cq~~~~~~~kLK~Hl~~~~~q~~d~  183 (184)
T KOG0562|consen  157 WRCQTFGPHFPKLKAHLREEYDQWLDK  183 (184)
T ss_pred             hhhhhcccccHHHHHHHHHHHhhcccc
Confidence            999943356999999999999888865

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.95  E-value=8.5e-28  Score=230.74  Aligned_cols=111  Identities=21%  Similarity=0.271  Sum_probs=102.0

Q ss_pred             EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 004319          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (761)
Q Consensus       344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~  423 (761)
                      +|.|++||||++.      +|||||+||..|. ++|||++||+++||++|++||++. +++++|++++|+       +++
T Consensus         2 ki~l~~GdIt~~~------vDaIVNaan~~l~-~~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~-------~~~   66 (140)
T cd02905           2 RIVLWEGDICNLN------VDAIVNSTNETLT-DKNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTK-------GYN   66 (140)
T ss_pred             eEEEEeCccCccc------CCEEEeCCccccC-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEec-------CCC
Confidence            5889999999997      9999999999999 899999999999999999999987 779999999999       589


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       424 l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      |+|+||||+|||.|+....       .++.++|++||+++|++|     .|||||+++
T Consensus        67 L~~k~VIH~vgP~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~  117 (140)
T cd02905          67 LPARFIIHTVGPKYNVKYR-------TAAENALYSCYRNVLQLAKELGLESIALCVIS  117 (140)
T ss_pred             CCccEEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            9999999999999987543       246789999999999997     699999997

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.94  E-value=2.7e-27  Score=236.31  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=103.0

Q ss_pred             cCCeEEEEEEccc--ccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 004319          340 INPKKFFTFVGDI--TRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL  414 (761)
Q Consensus       340 ~~~~~l~v~~GDI--t~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l  414 (761)
                      +.+.+|+|++|||  |++.      +||||||||.+|. ++|||++||+++||++|++||+++.   +++++|++++|+ 
T Consensus        15 ~~~~~i~i~~gDI~~t~~~------vDaIVNaaN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~-   86 (186)
T cd02904          15 FLGQKLSLVQSDISIGSID------VEGIVHPTNADID-LKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQ-   86 (186)
T ss_pred             cCCCEEEEEECCcccccee------ccEEEcCCccccC-CCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEcc-
Confidence            4568899999999  9987      9999999999999 8999999999999999999998763   789999999999 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                            +++|+|+||||||||.|+..          +..++|++||++||++|     .|||||+|+
T Consensus        87 ------a~~Lp~k~VIHtVgP~~~~~----------~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIs  137 (186)
T cd02904          87 ------AHGLPAKFVIHCHSPQWGSD----------KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLP  137 (186)
T ss_pred             ------CCCCCCCEEEEeCCCCCCCC----------chHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence                  58899999999999999642          24789999999999997     699999997

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B

Probab=99.94  E-value=1.1e-26  Score=216.36  Aligned_cols=112  Identities=40%  Similarity=0.600  Sum_probs=87.4

Q ss_pred             HhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCce
Q 004319          565 YRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASL  643 (761)
Q Consensus       565 ~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~  643 (761)
                      +.++...+. |+.+||+||++|+|.|+||+|+.|+|||||+.||.++.+|+.+|+++|++|.+.+.+++++.... ....
T Consensus         4 f~~i~~~~~-~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~   82 (116)
T PF11969_consen    4 FCIIIRGEE-PERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSD   82 (116)
T ss_dssp             HHHHTTSSS-GGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGG
T ss_pred             ceEeEcCCC-CCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            345555555 77899999999999999999999999999955999999999999999999999999999887643 3456


Q ss_pred             eeeecccCCCcccceeeeeecCCccccccccccc
Q 004319          644 AFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKH  677 (761)
Q Consensus       644 ~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH  677 (761)
                      .+++|||++|||+|||||||+.||.|++||+|||
T Consensus        83 ~~~~gfH~~PS~~HLHlHvi~~~~~s~~lk~k~h  116 (116)
T PF11969_consen   83 DIRLGFHYPPSVYHLHLHVISPDFDSPCLKNKKH  116 (116)
T ss_dssp             GEEEEEESS-SSSS-EEEEEETTS--TTSB----
T ss_pred             hhcccccCCCCcceEEEEEccCCCcCcccccCCC
Confidence            7999999999999999999999999999999998

>PRK04143 hypothetical protein; Provisional

Probab=99.92  E-value=1e-25  Score=236.07  Aligned_cols=136  Identities=26%  Similarity=0.287  Sum_probs=112.8

Q ss_pred             CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCC-----ChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEE
Q 004319          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-----GGVNAAIFSAAGPALEVATAERA----KSLYPGNSVI  411 (761)
Q Consensus       341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~-----gGV~~AI~~aAG~~l~~e~~~~~----~~~~~G~avv  411 (761)
                      .+.+|.||+||||++.      +||||||||+.|. ++     |||++||+++||++|+++|+++.    ..+++|+|++
T Consensus        81 ~~~~i~i~~GDIt~l~------vDAIVNAANs~L~-g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~i  153 (264)
T PRK04143         81 KYDNIFLWQGDITRLK------VDAIVNAANSRLL-GCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKI  153 (264)
T ss_pred             CCCEEEEEECCcceee------cCEEEeCcccccc-cCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEE
Confidence            5689999999999997      9999999999998 54     89999999999999999999873    4689999999


Q ss_pred             ecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc-----ccCCC
Q 004319          412 VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK-----LSKGC  481 (761)
Q Consensus       412 T~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~-----~~~~~  481 (761)
                      |+       +++|+|+||||||||.|+.+..      ..+..++|++||++||++|     .||||||+|     +|...
T Consensus       154 T~-------~~nLp~kyVIHtVgP~~~~g~~------~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~  220 (264)
T PRK04143        154 TR-------AYNLPAKYVIHTVGPIIRKQPV------SPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEE  220 (264)
T ss_pred             ec-------CCCCCCCEEEEECCCcccCCCC------CcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHH
Confidence            99       5899999999999999976321      1246789999999999987     589999998     66555


Q ss_pred             CcccccCCCcccccccc
Q 004319          482 NEDIRLEPSVSQDHSED  498 (761)
Q Consensus       482 ~~~~~~~~~~~~~~~~~  498 (761)
                      ++.++  ..+..+|+..
T Consensus       221 aA~ia--~~tv~~fl~~  235 (264)
T PRK04143        221 AAEIA--IKTVLSWLKE  235 (264)
T ss_pred             HHHHH--HHHHHHHHHh
Confidence            55555  3334444443

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.91  E-value=1.1e-24  Score=211.23  Aligned_cols=114  Identities=28%  Similarity=0.283  Sum_probs=99.9

Q ss_pred             EEEEEEcccccccccCCccccEEEeCCCCCCcC----CCChhhHHHHHhhcHHHHHHHHHhc----CCCCCCCEEEecCC
Q 004319          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKP----GGGGVNAAIFSAAGPALEVATAERA----KSLYPGNSVIVPLP  415 (761)
Q Consensus       344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~----~~gGV~~AI~~aAG~~l~~e~~~~~----~~~~~G~avvT~l~  415 (761)
                      +|+|++||||++.      +|||||+||+.|..    ++|||++||+++||++|++||+++.    +.+++|++++|+  
T Consensus         1 ~i~v~~GdIt~~~------~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~--   72 (147)
T cd02906           1 SIYLWKGDITTLK------VDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITP--   72 (147)
T ss_pred             CeEEEECCcCCcc------CCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEe--
Confidence            4789999999997      99999999999972    3489999999999999999999873    368999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                           +++|+|+||||+|||.|+....+      .+..++|++||+++|++|     .|||||+++
T Consensus        73 -----~~~L~~k~VIHavgP~~~~~~~~------~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~  127 (147)
T cd02906          73 -----GYNLPAKYVIHTVGPIIERGLTT------PIHRDLLAKCYLSCLDLAEKAGLKSIAFCCIS  127 (147)
T ss_pred             -----CCCCCCCEEEEECCCcccCCCCC------ccHHHHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence                 58899999999999999865321      246789999999999998     699999997

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.90  E-value=1.6e-23  Score=206.96  Aligned_cols=110  Identities=35%  Similarity=0.414  Sum_probs=99.4

Q ss_pred             EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCC
Q 004319          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGR  423 (761)
Q Consensus       344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~  423 (761)
                      +|+|++|||+++.      +|||||+||..|. ++|||++||+++||++|++||+++ +++++|++++|+       +++
T Consensus         1 ~i~i~~GdI~~~~------~daIVn~an~~l~-~~ggv~~ai~~~~G~~l~~e~~~~-~~~~~G~~v~T~-------~~~   65 (165)
T cd02908           1 KIEIIQGDITKLE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPELLEECREL-RGCPTGEAVITS-------GYN   65 (165)
T ss_pred             CeEEEecccceee------cCEEEECCCCccc-CCCcHHHHHHHHhCHHHHHHHHHh-CCCCCCCEEEee-------CCC
Confidence            4789999999997      9999999999999 899999999999999999999988 678999999999       488


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          424 EGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       424 l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      |+|++|||+|||.|+...        ....++|++||+++|+.|     .|||||.++
T Consensus        66 l~~~~IiH~v~P~~~~~~--------~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ig  115 (165)
T cd02908          66 LPAKYVIHTVGPVWRGGQ--------HNEAELLASCYRNSLELARENGLRSIAFPAIS  115 (165)
T ss_pred             CCCCEEEEEcCCcccCCC--------CcHHHHHHHHHHHHHHHHHHcCCCEEEECcee
Confidence            999999999999997642        246789999999999987     579999775

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.89  E-value=3.2e-23  Score=206.76  Aligned_cols=114  Identities=31%  Similarity=0.396  Sum_probs=103.0

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTS  418 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~  418 (761)
                      |.+|+|++|||+++.      +|||||++|..|. ++||+++||+++||++|++||+++.   +++++|++++|+     
T Consensus         1 ~~~i~i~~GdI~~~~------~DaIVn~an~~~~-~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~-----   68 (175)
T cd02907           1 GVTLSVIKGDITRFP------VDAIVNAANEDLK-HGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTS-----   68 (175)
T ss_pred             CcEEEEEECCcceee------cCEEEECCCCCcC-CCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEec-----
Confidence            578999999999997      9999999999999 8999999999999999999998763   789999999999     


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       419 ~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                        +++|+|++|||+|||.|+....       ....++|++||++||+.|     .|||||+++
T Consensus        69 --~~~L~~k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lg  122 (175)
T cd02907          69 --AGKLPCKYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKAEELGLRSIAIPAIS  122 (175)
T ss_pred             --CCCCCCCEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence              4789999999999999987532       256899999999999987     589999886

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PRK00431 RNase III inhibitor; Provisional

Probab=99.88  E-value=1e-22  Score=203.45  Aligned_cols=114  Identities=34%  Similarity=0.407  Sum_probs=102.5

Q ss_pred             CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCC
Q 004319          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPST  417 (761)
Q Consensus       341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~  417 (761)
                      +|++|+|++|||+++.      +|||||++|..|. ++|||++||+++||++|+++|+++.   +++++|++++|+    
T Consensus         1 ~~~~i~i~~Gdi~~~~------~daIVn~aN~~~~-~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~----   69 (177)
T PRK00431          1 MGMRIEVVQGDITELE------VDAIVNAANSSLL-GGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITS----   69 (177)
T ss_pred             CCcEEEEEeCCccccc------CCEEEECCCcccc-CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEec----
Confidence            3689999999999996      9999999999999 8999999999999999999999873   789999999999    


Q ss_pred             CCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          418 SPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       418 ~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                         +++|+|++|||+|||.|+....        .+.+.|++||+++|+.|     .|||||.++
T Consensus        70 ---~~~l~~~~IiH~v~P~~~~~~~--------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lg  122 (177)
T PRK00431         70 ---AGRLPAKYVIHTVGPVWRGGED--------NEAELLASAYRNSLRLAAELGLRSIAFPAIS  122 (177)
T ss_pred             ---CCCCCCCEEEEecCCeecCCCC--------cHHHHHHHHHHHHHHHHHHcCCceEEECccc
Confidence               4789999999999999976432        26789999999999886     689998774

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.88  E-value=1.8e-22  Score=193.63  Aligned_cols=108  Identities=27%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCC-CcCCCChhhHHHHHhhcHHHHHHHHHhcCCCC-CCCEEEecCCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWR-LKPGGGGVNAAIFSAAGPALEVATAERAKSLY-PGNSVIVPLPSTSPL  420 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~-L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~-~G~avvT~l~~~~~~  420 (761)
                      .+|+|++|||+++.      +|||||+||.. +. ++|||++||+++||++|+++|+++ ..+. +|++++|+       
T Consensus         1 ~~i~i~~GdI~~~~------~DaIVN~an~~~~~-~~ggv~~aI~~~~G~~l~~~~~~~-~~~~~~G~~~vT~-------   65 (137)
T cd02903           1 LTLQVAKGDIEDET------TDVIVNSVNPDLFL-LKGGVSKAILRKAGPELQKELDKA-KLGQTVGSVIVTK-------   65 (137)
T ss_pred             CEEEEEeCccCCcc------CCEEEECCCCccCC-CCCCHHHHHHHhccHHHHHHHHHH-cCCCCCCeEEEec-------
Confidence            36899999999997      99999999999 66 899999999999999999999987 4455 69999999       


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       421 ~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      +++|+|++|||+++|+|...           ....|++||++||+.|     .|||||+++
T Consensus        66 ~~~L~~k~IiH~~~p~~~~~-----------~~~~l~~~~~~~L~~a~~~~~~SIAfP~ig  115 (137)
T cd02903          66 GGNLPCKYVYHVVLPNWSNG-----------ALKILKDIVSECLEKCEELSYTSISFPAIG  115 (137)
T ss_pred             CCCCCCCEEEEecCCCCCCc-----------hHHHHHHHHHHHHHHHHHCCCcEEEECCCc
Confidence            47899999999999999642           4678999999999986     699999986

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.87  E-value=3.3e-22  Score=197.86  Aligned_cols=113  Identities=37%  Similarity=0.469  Sum_probs=101.4

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc-----CCCCCCCEEEecCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA-----KSLYPGNSVIVPLPS  416 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~-----~~~~~G~avvT~l~~  416 (761)
                      ...|.+++||||++.      +|||||+||+.|. +||||+.||++++|++|+++|.+..     +.+++|++++|+   
T Consensus         2 ~~~i~~v~GDIt~~~------~daIVnaAN~~l~-~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~---   71 (179)
T COG2110           2 MTNIRVVQGDITKLE------ADAIVNAANSQLL-GGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITE---   71 (179)
T ss_pred             CceEEEEecccceee------hhheeecccccCC-CCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEcc---
Confidence            357899999999996      9999999999999 9999999999999999999999974     236779999999   


Q ss_pred             CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       417 ~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                          .++|+.+||||+|||.|.+..+        ...+.|+.||+++|++|     .|||||++|
T Consensus        72 ----~~~l~a~~ViH~vgp~~~~g~~--------~~~e~l~~a~~~~l~~a~~~g~~SiAfPais  124 (179)
T COG2110          72 ----AGRLPAKYVIHTVGPSWRGGSK--------DEAELLAAAYRAALRLAKEAGVRSVAFPAIS  124 (179)
T ss_pred             ----CcCCCCCEEEecCCCcccCCCh--------hHHHHHHHHHHHHHHHHHHcCCceeeccccc
Confidence                5889999999999999987633        35689999999999996     699999997

>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]

Probab=99.84  E-value=3.7e-21  Score=177.18  Aligned_cols=116  Identities=27%  Similarity=0.460  Sum_probs=103.4

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC--
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP--  653 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p--  653 (761)
                      ....-|+|++|+|+|+||+|+.||||||| +||.+..+|+.++.+|++.|++.|+.+..+....+. ...++|||-+|  
T Consensus        47 ell~~En~~~V~fkDikPaA~~HYLvipK-~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~-~~~r~GFHLPPf~  124 (166)
T KOG4359|consen   47 ELLHCENEDLVCFKDIKPAATHHYLVVPK-KHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDF-TNVRMGFHLPPFC  124 (166)
T ss_pred             ceeEecCCcEEEEecCCccccceEEEech-HHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCc-hheeEeccCCCcc
Confidence            44667999999999999999999999999 899999999999999999999999999877654432 45899999999  


Q ss_pred             cccceeeeeecCCcccccccccccccccCc-ccccCHHHHHHHHH
Q 004319          654 SMRQLHLHVISQDFNSKHLKNKKHWNSFNT-AFFCDSVDVLEEIS  697 (761)
Q Consensus       654 Sv~HLHlHVIs~d~~s~~lk~kkH~nsF~t-~fFv~~~~v~~~l~  697 (761)
                      ||.|||||+|.+.-+|..+. |.   +|.+ .||.+.+++|++|+
T Consensus       125 SV~HLHlH~I~P~~DMgf~s-Kl---~FrPs~wFK~a~~lI~~L~  165 (166)
T KOG4359|consen  125 SVSHLHLHVIAPVDDMGFLS-KL---VFRPSYWFKTADHLIEKLR  165 (166)
T ss_pred             eeeeeeEeeecchHHhchhh-ee---EeecceEeeeHHHHHHHhh
Confidence            99999999999999988876 33   6875 79999999999986

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=99.83  E-value=2.5e-20  Score=177.65  Aligned_cols=107  Identities=31%  Similarity=0.334  Sum_probs=96.4

Q ss_pred             EEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCC
Q 004319          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCGRE  424 (761)
Q Consensus       345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l  424 (761)
                      |++++|||+++.      +|||||++|..+. ++|||+++|++++|++++++|.+. +.+++|++++|+       +++|
T Consensus         2 i~i~~GdI~~~~------~DaIVn~~N~~~~-~g~Gva~ai~~~~G~~~~~~~~~~-~~~~~G~~~~t~-------~~~l   66 (133)
T cd03330           2 LEVVQGDITKVD------ADAIVNAANSRLR-MGGGVAGAIKRAGGSVIEREAVRK-APIPVGEAVITG-------AGDL   66 (133)
T ss_pred             EEEEEccccccc------CCEEEeCCCCCCC-CCCcHHHHHHHHhCHHHHHHHHHc-CCCCCCeEEEEe-------CCCC
Confidence            789999999997      9999999999999 899999999999999999999886 789999999998       4789


Q ss_pred             CccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319          425 GVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK  476 (761)
Q Consensus       425 ~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~  476 (761)
                      +|++|||++||.+.. .         ...+.|++||+++|+.|.     |||||+++
T Consensus        67 ~~k~Iih~~~~~~~~-~---------~~~~~l~~~~~~~l~~a~~~~~~sIA~P~ig  113 (133)
T cd03330          67 PARYVIHAATMEEPG-R---------SSEESVRKATRAALALADELGIESVAFPAMG  113 (133)
T ss_pred             CCCEEEEeCCCCCCC-C---------CHHHHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence            999999999997643 1         246789999999999975     89999886

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.79  E-value=1.3e-18  Score=199.08  Aligned_cols=141  Identities=27%  Similarity=0.426  Sum_probs=127.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF   96 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~   96 (761)
                      ..+|.||+|+|+|||||||||++++...+  +.+|++|.+     +.+..|+..+.++|..|++||||+||.++.+|..|
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g--~~~vn~D~l-----g~~~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~  438 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG--YKHVNADTL-----GSTQNCLTACERALDQGKRCAIDNTNPDAASRAKF  438 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcC--CeEECcHHH-----HHHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence            45789999999999999999999999877  889999998     35777889999999999999999999999999999


Q ss_pred             HHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319           97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (761)
Q Consensus        97 ~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~  165 (761)
                      +++ +++++.+++++|++|.++|++|+..|..... -...+++.++.+|+++|++|...|||+.|+.++-
T Consensus       439 i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~-s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~f  507 (526)
T TIGR01663       439 LQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDS-AHIKIKDMVFNGMKKKFEAPALAEGFIAIHEINF  507 (526)
T ss_pred             HHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCc-ccCCCCHHHHHHHHhhCCCCCcccCceEEEEEeC
Confidence            999 9999999999999999999999999975322 1235788999999999999999999999988864

Note that the EC number for the kinase function is: 2.7.1.78

>COG4639 Predicted kinase [General function prediction only]

Probab=99.74  E-value=1.2e-17  Score=159.68  Aligned_cols=141  Identities=26%  Similarity=0.343  Sum_probs=118.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC---------CC----cHHHHHHHHHHHHHCCCcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SG----TKVQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~---------~~----~~~~~~~~~~~~L~~g~~VIID~   85 (761)
                      ++.|++|+|+|||||||||+..+..    ...++.|+++...         .+    .++.+.+.++++|..|+..|||+
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~~----~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidA   76 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFLQ----NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDA   76 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCCC----cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence            3679999999999999999987665    3457777764211         11    34556688899999999999999


Q ss_pred             CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (761)
Q Consensus        86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~  164 (761)
                      ||+.+++|+.++++ +.+|+..++|+|++|.++|.+|+..|.+       .+++++|.+|.+....+...|+|..++...
T Consensus        77 tn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R-------qv~~~VI~r~~r~~~~~l~~e~~~~~~~~~  149 (168)
T COG4639          77 TNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER-------QVPEEVIPRMLRETIDLLEKEPFRYVWTLS  149 (168)
T ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch-------hCCHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            99999999999999 9999999999999999999999997766       689999999999877777789999888887


Q ss_pred             ChhhHH
Q 004319          165 NENDVQ  170 (761)
Q Consensus       165 ~~~ei~  170 (761)
                      .++.+.
T Consensus       150 s~e~~~  155 (168)
T COG4639         150 SPEKIC  155 (168)
T ss_pred             CHHHhc
Confidence            765443

>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]

Probab=99.74  E-value=5.3e-18  Score=152.45  Aligned_cols=92  Identities=22%  Similarity=0.345  Sum_probs=84.6

Q ss_pred             CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-CceeeeecccC
Q 004319          573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-ASLAFRLGYHS  651 (761)
Q Consensus       573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~~~~~~G~ha  651 (761)
                      .+|+.+|||||.+++|+|++|.|++|+||||| .||+.+..+.+.+.++|.+++-++++.+++..-.+ ++..+|.|-.+
T Consensus        27 eIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK-~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~~g  105 (127)
T KOG3275|consen   27 EIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPK-KHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDGYRVVQNNGKDG  105 (127)
T ss_pred             cCCcceEeeccceEEEEecCCCCCceEEEeec-ccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccceeEEEcCCccc
Confidence            47899999999999999999999999999999 79999988888889999999999999998876554 67889999999


Q ss_pred             CCcccceeeeeecC
Q 004319          652 APSMRQLHLHVISQ  665 (761)
Q Consensus       652 ~pSv~HLHlHVIs~  665 (761)
                      .|||+|+|+|||..
T Consensus       106 ~QsV~HvH~HvlgG  119 (127)
T KOG3275|consen  106 HQSVYHVHLHVLGG  119 (127)
T ss_pred             ceEEEEEEEEEeCC
Confidence            99999999999993

>PRK10687 purine nucleoside phosphoramidase; Provisional

Probab=99.73  E-value=1.6e-17  Score=155.47  Aligned_cols=101  Identities=25%  Similarity=0.338  Sum_probs=84.9

Q ss_pred             CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hcc-CCceeeeeccc
Q 004319          573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHE-DASLAFRLGYH  650 (761)
Q Consensus       573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~-~~~~~~~~G~h  650 (761)
                      ..|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++...+.+|+..+.+++++. +.. +.+..++.|-.
T Consensus        14 ~~p~~~v~edd~~~aflD~~P~~~GH~LViPK-~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~   92 (119)
T PRK10687         14 EIPSDIVYQDELVTAFRDISPQAPTHILIIPN-ILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRH   92 (119)
T ss_pred             CCCCCEEEECCCEEEEEcCCCCCCccEEEEeh-hHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCc
Confidence            46788999999999999999999999999999 8999999999999999999999998876543 223 34455677777


Q ss_pred             CCCcccceeeeeecCCcccccccc
Q 004319          651 SAPSMRQLHLHVISQDFNSKHLKN  674 (761)
Q Consensus       651 a~pSv~HLHlHVIs~d~~s~~lk~  674 (761)
                      ++|+|+|+|+|||++--..+.|.+
T Consensus        93 agQ~V~HlHiHvI~g~~~~~~~~~  116 (119)
T PRK10687         93 GGQEVYHIHMHLLGGRPLGPMLAH  116 (119)
T ss_pred             CCcccCEEEEEECCCcccCcchhh
Confidence            889999999999998665555544

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

Probab=99.72  E-value=3e-17  Score=149.76  Aligned_cols=89  Identities=35%  Similarity=0.631  Sum_probs=77.6

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP  653 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p  653 (761)
                      .+..+||+||.+++|.|.+|++++|+||||| +|+.++.+|+++++.+|.+|.+.+.+.+.+... .+...+|+|+|.+|
T Consensus        14 ~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk-~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~n~g~h~~p   91 (104)
T cd01278          14 DPEDQVYEDDRVVVFKDIYPKARHHYLVIPK-EHIASLKALTKEDVPLLEHMETVGREKLLRSDN-TDPSEFRFGFHAPP   91 (104)
T ss_pred             CCccEEEeCCCEEEEECCCCCCCceEEEEec-CCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcC-CCccCeEEEeCCCC
Confidence            3567999999999999999999999999999 799999999999999999999988886554311 11234899999999


Q ss_pred             --cccceeeeeec
Q 004319          654 --SMRQLHLHVIS  664 (761)
Q Consensus       654 --Sv~HLHlHVIs  664 (761)
                        ||+|||+||||
T Consensus        92 ~~~v~H~H~Hvi~  104 (104)
T cd01278          92 FTSVSHLHLHVIA  104 (104)
T ss_pred             CcCeeeEEEEeeC
Confidence              99999999997

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.71  E-value=4.6e-17  Score=155.41  Aligned_cols=127  Identities=31%  Similarity=0.410  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC------C--C-------cHHHHHHHHHHHHHCCCcEEEeCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK------S--G-------TKVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~------~--~-------~~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      ||+|+|+|||||||||+.|++.++  +.+|+.|.++...      .  .       .+..+...+..++..|.++|+|.+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~   78 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNT   78 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccC
Confidence            799999999999999999999988  8899999985211      0  0       011233677788899999999999


Q ss_pred             CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (761)
Q Consensus        87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P  151 (761)
                      |+...+|..|.++ +.+++.+.+|+|++|.+++.+|+.+|..+.+ ....++.+++.+|++.|++|
T Consensus        79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD-KRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT-TS----HHHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc-ccccCcHHHHHHHHHhhccC
Confidence            9999999999999 9999999999999999999999999998653 23358999999999999987

...

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=99.71  E-value=7.6e-17  Score=152.75  Aligned_cols=110  Identities=34%  Similarity=0.375  Sum_probs=94.7

Q ss_pred             EEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH-HHHHHHhc-CCCCCCCEEEecCCCCCCCCC
Q 004319          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL-EVATAERA-KSLYPGNSVIVPLPSTSPLCG  422 (761)
Q Consensus       345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l-~~e~~~~~-~~~~~G~avvT~l~~~~~~~~  422 (761)
                      |++++|||+++.      +|+|||++|..+. ++||++++|++++|+++ ++++++.. +.+++|++++|+       .+
T Consensus         2 i~~~~Gdi~~~~------~d~IV~~~n~~~~-~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~-------~~   67 (133)
T smart00506        2 LKVVKGDITKPR------ADAIVNAANSDGA-HGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTE-------GG   67 (133)
T ss_pred             eEEEeCCCCccc------CCEEEECCCcccC-CCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEec-------CC
Confidence            678999999986      9999999999999 89999999999999996 66666553 479999999999       35


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      ++++++|||+++|.|....        ....+.|++||++||+.+     .||+||.++
T Consensus        68 ~~~~~~Iih~~~p~~~~~~--------~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~ig  118 (133)
T smart00506       68 NLPAKYVIHAVGPRASGHS--------NEGFELLENAYRNCLELAIELGITSVAIPLIG  118 (133)
T ss_pred             CCCCCEEEEeCCCCCCCCC--------ccHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            6889999999999997542        246899999999999886     489998775

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=99.70  E-value=1.5e-16  Score=153.52  Aligned_cols=112  Identities=33%  Similarity=0.404  Sum_probs=96.6

Q ss_pred             EEEEEEccccc-ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcC--CCCCCCEEEecCCCCCCC
Q 004319          344 KFFTFVGDITR-LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK--SLYPGNSVIVPLPSTSPL  420 (761)
Q Consensus       344 ~l~v~~GDIt~-~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~--~~~~G~avvT~l~~~~~~  420 (761)
                      .|.+++|||++ ..      +|+|||++|..+. ++||++.+|++++|+++++++++...  .+++|++++|+       
T Consensus         1 ~i~~~~GDi~~~~~------~d~IVn~~n~~~~-~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~-------   66 (147)
T cd02749           1 KIKVVSGDITKPLG------SDAIVNAANSSGR-DGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTK-------   66 (147)
T ss_pred             CEEEEECCCCCCCC------CCEEEeCCCCCCC-CCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECc-------
Confidence            36799999999 65      9999999999999 89999999999999999999998742  26899999999       


Q ss_pred             CCCCC-ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          421 CGREG-VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       421 ~~~l~-~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      .++++ +++|||+++|.|....+       ..+.++|++||++||+.+     .||+||.++
T Consensus        67 ~~~~~~~~~vih~~~p~~~~~~~-------~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~ig  121 (147)
T cd02749          67 GYNLDGAKYLIHIVGPKYNQGNN-------KAAFELLKNAYENCLKEAEEKGIKSIAFPLIG  121 (147)
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCC-------chHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            36677 99999999999976532       246789999999999875     469999875

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

Probab=99.67  E-value=2.6e-16  Score=143.32  Aligned_cols=91  Identities=23%  Similarity=0.389  Sum_probs=78.2

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhh--ccCCceeeeecccC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFL--HEDASLAFRLGYHS  651 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~--~~~~~~~~~~G~ha  651 (761)
                      .|..+||+||.+++|.|.+|.++||+||||| +|+.++.+|++++..+|.+|++.++++++...  ..+.+..++.|..+
T Consensus        12 ~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk-~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g~~~   90 (104)
T cd01276          12 IPAKKVYEDDEVLAFHDINPQAPVHILVIPK-KHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDG   90 (104)
T ss_pred             CccCEEEECCCEEEEECCCCCCCCEEEEEec-ceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCC
Confidence            4577999999999999999999999999999 79999999999999999999999988877653  23444456666667


Q ss_pred             CCcccceeeeeecC
Q 004319          652 APSMRQLHLHVISQ  665 (761)
Q Consensus       652 ~pSv~HLHlHVIs~  665 (761)
                      +++++|||+|||++
T Consensus        91 g~~v~H~HiHii~~  104 (104)
T cd01276          91 GQEVFHLHLHLLGG  104 (104)
T ss_pred             CCceeEEEEEEeCC
Confidence            77999999999985

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.

>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]

Probab=99.66  E-value=5.3e-16  Score=148.94  Aligned_cols=92  Identities=21%  Similarity=0.313  Sum_probs=81.0

Q ss_pred             CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccC
Q 004319          573 RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHS  651 (761)
Q Consensus       573 ~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha  651 (761)
                      ..|+.+||||+++++|+|+||.+++|+||||| +|+.++.+++++.+..|..+.....+.+++.... +.+..+|+|..+
T Consensus        12 e~~~~~Vye~~~~~afld~~P~~~gH~LviPk-~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~a   90 (138)
T COG0537          12 EIPANKVYEDEHVLAFLDIYPAAPGHTLVIPK-RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAA   90 (138)
T ss_pred             CCCceEEEeCCCEEEEecCCCCCCCeEEEEec-cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCccc
Confidence            45788999999999999999999999999999 8999999999999888887777777776666554 345679999999


Q ss_pred             CCcccceeeeeecC
Q 004319          652 APSMRQLHLHVISQ  665 (761)
Q Consensus       652 ~pSv~HLHlHVIs~  665 (761)
                      +|+|+|||+|||.+
T Consensus        91 gq~V~HlH~HvIPr  104 (138)
T COG0537          91 GQEVFHLHIHIIPR  104 (138)
T ss_pred             CcCcceEEEEEcCC
Confidence            99999999999997

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=99.66  E-value=4.4e-16  Score=156.13  Aligned_cols=118  Identities=21%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             eEEEEEEcccccccc----cCCccccEEEeCCCCCCcCCCChhhHHHHHhhc-HHHHHHHHHh-----cCCCCCCCEEEe
Q 004319          343 KKFFTFVGDITRLYT----GGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG-PALEVATAER-----AKSLYPGNSVIV  412 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~----~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG-~~l~~e~~~~-----~~~~~~G~avvT  412 (761)
                      ..+.|+.|+|+++..    ....++||||||||+.+. +||||++||++++| ++|+++|++.     .+.+++|++++|
T Consensus        19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~-mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it   97 (186)
T cd02900          19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGY-LDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV   97 (186)
T ss_pred             CCeEEEeCCceecchhhcccccCccCEEEeCCCcccC-CCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence            345566666665430    001128999999999999 99999999999999 6999999764     378999999999


Q ss_pred             cCCCCCCCCCCCC----------ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-------HHhhcccc
Q 004319          413 PLPSTSPLCGREG----------VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-------LSIVRSQE  475 (761)
Q Consensus       413 ~l~~~~~~~~~l~----------~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-------~siaf~~~  475 (761)
                      ++       +++.          +++|||++++.+....        ....+.|++||+++|..|       .|||||.+
T Consensus        98 ~~-------~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~--------~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~i  162 (186)
T cd02900          98 PL-------GRALLEKTIYCRWGIPYLIHAPTMRVPSPV--------ITGTEPVFDAMWNALNAIPKENQEINTLVLPGL  162 (186)
T ss_pred             cC-------CCCccccccccccCCCEEEEcCcccCCCCC--------CCcHHHHHHHHHHHHHHHHhccCCCCEEEECch
Confidence            93       4454          9999999775543111        124678999999999875       48999988


Q ss_pred             c
Q 004319          476 K  476 (761)
Q Consensus       476 ~  476 (761)
                      +
T Consensus       163 g  163 (186)
T cd02900         163 G  163 (186)
T ss_pred             h
Confidence            6

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=99.64  E-value=2.8e-16  Score=156.50  Aligned_cols=106  Identities=26%  Similarity=0.339  Sum_probs=93.4

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (761)
                      +..+.+|++|++.+.      +||||      |. +|||++.+|+++|||++..||..+ ..|++|.+.+|.       +
T Consensus        32 ~~~i~lwr~d~~~l~------v~avv------l~-~g~~~~~ai~~aagp~l~~e~~~~-~~c~tG~ak~t~-------~   90 (200)
T KOG2633|consen   32 NGGISLWRGDGKTLE------VDAVV------LL-GGKGVDEAIHRAAGPELPLECAYL-HGCRTGAAKSTG-------G   90 (200)
T ss_pred             ccCeeEeeccccccc------ceeee------ec-cCcchhHHHHHhcCCcchHHHHhh-cCCCCCeeEecC-------C
Confidence            357899999999998      99999      66 899999999999999999999998 459999999999       5


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      ++|++++|||+|||.|...+        .+.+.-|..||+|||.+|     .+|||||++
T Consensus        91 ~~Lpak~vIHtvgP~~~~d~--------~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~  142 (200)
T KOG2633|consen   91 YGLPAKRVIHTVGPRWKEDK--------LQECYFLHSCYRSCLDLAIEKLLSSIAFPKIS  142 (200)
T ss_pred             CCCceeEEEEecCchhhccc--------hHHHHHHHHHHHHHHHHHHHhccceeeeeeee
Confidence            78999999999999997632        233347999999999997     479999997

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=99.62  E-value=1.9e-15  Score=136.43  Aligned_cols=92  Identities=21%  Similarity=0.297  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHSA  652 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha~  652 (761)
                      .|+.+|||||.+++|.|.+|.+++|+||||| +|++++.+|+++....|..+.....+.+++.+.. +.+..++.|..++
T Consensus         4 ~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk-~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~g   82 (98)
T PF01230_consen    4 IPARVVYEDDHFVAFLDIFPISPGHLLVIPK-RHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAG   82 (98)
T ss_dssp             SHCEEEEE-SSEEEEEESSTSSTTEEEEEES-STGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGT
T ss_pred             CCeeEEEECCCEEEEEcCCCCCCeEEEEEec-ccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhc
Confidence            4678999999999999999999999999999 7999999999988777777766666666655443 3455688899999


Q ss_pred             CcccceeeeeecCC
Q 004319          653 PSMRQLHLHVISQD  666 (761)
Q Consensus       653 pSv~HLHlHVIs~d  666 (761)
                      ++|+|+|+|||++.
T Consensus        83 q~v~HlH~HviPR~   96 (98)
T PF01230_consen   83 QSVPHLHFHVIPRY   96 (98)
T ss_dssp             SSSSS-EEEEEEES
T ss_pred             CccCEEEEEEeccc
Confidence            99999999999863

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.61  E-value=4.5e-17  Score=193.19  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=112.7

Q ss_pred             ccCCeEEEEEE----cccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHH---HHHHHHh-----------
Q 004319          339 HINPKKFFTFV----GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAER-----------  400 (761)
Q Consensus       339 ~~~~~~l~v~~----GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l---~~e~~~~-----------  400 (761)
                      ..+|.++.+++    ||||.+.      +|+|||+||..|. +||||++||+++||+++   +++|.++           
T Consensus       471 ~~~~~~~~~~~~~~~~dit~~~------~d~ivnaan~~ll-~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  543 (725)
T PRK13341        471 GQEGERLAILRDRLWSDITWQR------HDRVLNLANRSLL-WALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLE  543 (725)
T ss_pred             hhcccHHHHHHHHHhccccccc------cceeEEccCccch-hhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhh
Confidence            34678889999    9999996      9999999999999 89999999999999999   8888752           


Q ss_pred             ------------------------cCCCCCCCEEEec---------CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 004319          401 ------------------------AKSLYPGNSVIVP---------LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG  447 (761)
Q Consensus       401 ------------------------~~~~~~G~avvT~---------l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~  447 (761)
                                              .|+|++|++++|.         ++    .+|+|.|++|||+|||.|....+     
T Consensus       544 rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~----~~g~L~~~~vIh~vGp~~~~~~~-----  614 (725)
T PRK13341        544 RPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLT----PAGKLKLLYSIPAVGPAWALLSE-----  614 (725)
T ss_pred             CccccccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcC----CCCeeEEEEeccccChHhhhcCc-----
Confidence                                    4889999999991         22    16899999999999999976421     


Q ss_pred             CchhhHHHHHHHHHHHHHHH-----H----------Hhhccccc-----ccCCCCcccccCCCcccccccc
Q 004319          448 DYVKGCEILRKAYTSLFEGF-----L----------SIVRSQEK-----LSKGCNEDIRLEPSVSQDHSED  498 (761)
Q Consensus       448 ~~~~~~~~L~~ay~~~L~~a-----~----------siaf~~~~-----~~~~~~~~~~~~~~~~~~~~~~  498 (761)
                           .+.|.+||+++|.+|     .          |||||++|     +|...+..++  .....+|+.+
T Consensus       615 -----~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~--~~~i~~~~~~  678 (725)
T PRK13341        615 -----DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGID--SKLIKRWLAQ  678 (725)
T ss_pred             -----cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccC--HHHHHHHHhc
Confidence                 468999999999985     5          99999997     6666666665  4445555555

>PRK06762 hypothetical protein; Provisional

Probab=99.60  E-value=1.8e-14  Score=141.70  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC--------CcHHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTKVQCLTSASSALKKGKSVFLDRCNLER   90 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~--------~~~~~~~~~~~~~L~~g~~VIID~tn~~~   90 (761)
                      +|.+|+|+|+|||||||+|+.|.+.++..+.+++.|.++....        .........+...+..|..||+|+++...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~   80 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD   80 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence            5789999999999999999999999865577889998863211        12233345555667889999999998888


Q ss_pred             HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (761)
Q Consensus        91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~  165 (761)
                      .+|..+..+ ...+..+..|||++|.++|.+|+.+|....     ..+++.+++++..++.+..   ++.+++.++
T Consensus        81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-----~~~~~~l~~~~~~~~~~~~---~~~~~~~~~  148 (166)
T PRK06762         81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-----EFGEDDMRRWWNPHDTLGV---IGETIFTDN  148 (166)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-----cCCHHHHHHHHhhcCCcCC---CCeEEecCC
Confidence            888878778 777888999999999999999999997521     4679999999988876632   344444433

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=99.59  E-value=1.7e-15  Score=140.26  Aligned_cols=95  Identities=36%  Similarity=0.456  Sum_probs=84.0

Q ss_pred             EeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCC
Q 004319          367 ANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPN  443 (761)
Q Consensus       367 VNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~  443 (761)
                      ||++|.+|. ++|||+++|++++|++++++|++..   +.+++|++++|+       .+++++++|||+|||.|....  
T Consensus         1 Vn~~N~~~~-~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~-------~~~l~~~~Iih~v~P~~~~~~--   70 (118)
T PF01661_consen    1 VNAANCFLS-MGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTP-------GGNLPCKYIIHAVGPTYNSPG--   70 (118)
T ss_dssp             EEEEETTSS-BSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEE-------ETTSSSSEEEEEEEEETTTST--
T ss_pred             CcCCCCCCC-CCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeec-------CCCccccceEEEecceecccc--
Confidence            899999999 8999999999999999999998863   679999999999       477889999999999997543  


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          444 CLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       444 ~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                           .....+.|++||+++|+.|     .||+||.++
T Consensus        71 -----~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig  103 (118)
T PF01661_consen   71 -----EKNSYEALESAYRNALQKAEENGIKSIAFPAIG  103 (118)
T ss_dssp             -----STTHHHHHHHHHHHHHHHHHHTTTSEEEEESTT
T ss_pred             -----ccccHHHHHHHHHHHHHHHHHcCCcccccCccc
Confidence                 2357899999999999986     588888775

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.59  E-value=9.4e-15  Score=157.32  Aligned_cols=177  Identities=24%  Similarity=0.338  Sum_probs=126.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---------c--H-----HHHHHHHHHHHHCCCcEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--K-----VQCLTSASSALKKGKSVF   82 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---------~--~-----~~~~~~~~~~L~~g~~VI   82 (761)
                      ++.+|+|+|+|||||||+|++|++.+. .+.+++.|.++.....         .  .     ......+..++..|..||
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vI   79 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVI   79 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            467999999999999999999999983 3788999998532110         0  0     112245567778899999


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc--------
Q 004319           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL--------  153 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~--------  153 (761)
                      ||++++...+|..|..+ +..++.+.+|+|++|.+++.+|+.+|..+      .++.+++.+|+++++.+..        
T Consensus        80 id~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~~p~~~~  153 (300)
T PHA02530         80 ISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER------AVPEDVLRSMFKQMKEYRGLVWPVYTA  153 (300)
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC------CCCHHHHHHHHHHHHHhcCCCCceecc
Confidence            99999999999999998 88888898999999999999999999654      5799999999988764432        


Q ss_pred             cCCceEEEEcCChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhCCC
Q 004319          154 SEGFSRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAP  213 (761)
Q Consensus       154 ~EgFd~V~vv~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~~~  213 (761)
                      .++...+++++-++.+.+..    ...|++..  .     ......-+++..++++....
T Consensus       154 ~~~~~~~~~~D~dgtl~~~~----~~~~~~~~--~-----~~~~~~~~~~~~~l~~l~~~  202 (300)
T PHA02530        154 DPGLPKAVIFDIDGTLAKMG----GRSPYDWT--K-----VKEDKPNPMVVELVKMYKAA  202 (300)
T ss_pred             CCCCCCEEEEECCCcCcCCC----CCCccchh--h-----cccCCCChhHHHHHHHHHhC
Confidence            12222455666555444321    11333321  1     23445566777777776543

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.58  E-value=1.1e-14  Score=145.14  Aligned_cols=134  Identities=22%  Similarity=0.276  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc---cCCC-CC----cHHH-----HHHHHHHHHHCCCcEEEeC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI---NKGK-SG----TKVQ-----CLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i---~~~~-~~----~~~~-----~~~~~~~~L~~g~~VIID~   85 (761)
                      ||++.|.|||||||||+.|++.+.   ....++..|..   ...+ ..    ...+     ....+..+++ ...||+|.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvDd   81 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVDD   81 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEec
Confidence            799999999999999999998775   23334444333   1111 11    1111     1123344444 56799999


Q ss_pred             CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (761)
Q Consensus        86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv  163 (761)
                      +|+....|+.+..+ +.....+++|++.+|.++|++|+.+|..       ..|++++++++.+|++|...-.||.-.++
T Consensus        82 tNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge-------pip~Evl~qly~RfEePn~~~rWDspll~  153 (261)
T COG4088          82 TNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE-------PIPEEVLRQLYDRFEEPNPDRRWDSPLLV  153 (261)
T ss_pred             ccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC-------CCCHHHHHHHHHhhcCCCCCccccCceEE
Confidence            99999999999999 8899999999999999999999977776       68999999999999999998888874443

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.57  E-value=1.1e-14  Score=154.83  Aligned_cols=133  Identities=23%  Similarity=0.346  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc--CCCCC-------cHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN--KGKSG-------TKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~--~~~~~-------~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      ||+|+|+|||||||+|++|.+.+.   ..+.+++.|.+.  ...+.       .+..+...+.+.|.....||+|+.|+.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi   82 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI   82 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence            799999999999999999987643   456778876664  11111       122344677888888889999999999


Q ss_pred             HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceE
Q 004319           90 REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSR  159 (761)
Q Consensus        90 ~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~  159 (761)
                      +.+|.++.++ +.++..+++|++++|.|.|++|+.+|....     .+++++|.+|..+||.|.....||.
T Consensus        83 Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-----~~~~e~i~~m~~RfE~P~~~nrWD~  148 (270)
T PF08433_consen   83 KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-----RYPEETIDDMIQRFEEPDPKNRWDS  148 (270)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S-HHHHHHHHHH---TTSS-GGGS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-----CCCHHHHHHHHHHhcCCCCCCCccC
Confidence            9999999999 999999999999999999999999998743     5899999999999999998666664

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.55  E-value=4.6e-14  Score=148.43  Aligned_cols=138  Identities=22%  Similarity=0.296  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC---CCc-----HHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---SGT-----KVQCLTSASSALKKGKSVFLDRCNLER   90 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~---~~~-----~~~~~~~~~~~L~~g~~VIID~tn~~~   90 (761)
                      ||+|+|+|||||||+|++|++.+.   ..+.+++.|.++...   ...     +......+..++..|..||+|++|+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~   80 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN   80 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence            689999999999999999998763   457778888774321   111     111235677788889999999999999


Q ss_pred             HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCce-EEEEcCCh
Q 004319           91 EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFS-RITLCQNE  166 (761)
Q Consensus        91 ~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd-~V~vv~~~  166 (761)
                      .+|..+.++ +..+..+.+||+++|.++|.+|+.+|..       ..+++++.+++.+++.|.....|+ ..+.++..
T Consensus        81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~  151 (249)
T TIGR03574        81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTT  151 (249)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-------CCCHHHHHHHHHhhCCCCCCCCccCceEEecCC
Confidence            999999998 8888889999999999999999998864       356889999999999998755444 33444443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.51  E-value=2.6e-13  Score=131.16  Aligned_cols=132  Identities=21%  Similarity=0.232  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC---------CCCc---HHHHH----HHHHHHH-HCCCcEEEe
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGT---KVQCL----TSASSAL-KKGKSVFLD   84 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~---------~~~~---~~~~~----~~~~~~L-~~g~~VIID   84 (761)
                      ||+|+|+|||||||+|+.|.+.++  +.+++.|.++..         ....   .....    ..+...+ ..+.++|+|
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG--APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC--CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            589999999999999999999987  677888888642         1111   11111    2222233 478899999


Q ss_pred             CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~  164 (761)
                      .++....+|..+..+. ++..+.+|+|++|.+++.+|+.+|..+      ..+.+.+..+++.|+.|...|+  .+++++
T Consensus        79 ~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~~~------~~~~~~~~~~~~~~~~p~~~~~--~~~~~~  149 (150)
T cd02021          79 CSALKRIYRDILRGGA-ANPRVRFVHLDGPREVLAERLAARKGH------FMPADLLDSQFETLEPPGEDEE--DVIVID  149 (150)
T ss_pred             eccccHHHHHHHHhcC-CCCCEEEEEEECCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC--CeEEcc
Confidence            9999988888776664 567788999999999999999999764      3558889999999999998665  455543

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=99.49  E-value=1.1e-13  Score=121.26  Aligned_cols=85  Identities=21%  Similarity=0.248  Sum_probs=67.4

Q ss_pred             EEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhcc-CCceeeeecccCCCcccc
Q 004319          579 LEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHE-DASLAFRLGYHSAPSMRQ  657 (761)
Q Consensus       579 vyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~-~~~~~~~~G~ha~pSv~H  657 (761)
                      |||||.++||.|.+|.+++|+||||| +|+.++.+|+++++..|..+.....+.+++.... ..+..++.|-.+++|++|
T Consensus         1 ~~e~~~~~a~~~~~p~~~gh~lIipk-~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H   79 (86)
T cd00468           1 VPDDEHSFAFVNLKPAAPGHVLVCPK-RHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPH   79 (86)
T ss_pred             CeecCcEEEEECCCCCCCCcEEEeCc-hhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCE
Confidence            69999999999999999999999999 8999999999988766666555444444433333 334456777778889999


Q ss_pred             eeeeeec
Q 004319          658 LHLHVIS  664 (761)
Q Consensus       658 LHlHVIs  664 (761)
                      +|+|||.
T Consensus        80 ~H~hiiP   86 (86)
T cd00468          80 VHLHVLP   86 (86)
T ss_pred             EEEEeCC
Confidence            9999984

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.47  E-value=7e-13  Score=130.11  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCC------cH-HHHHHHHHHHHHCCCcEEEeCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSG------TK-VQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~------~~-~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      |+|+|+|||||||+|+.|+..++  ..+++.|.+..         +...      .+ ..+...+...+..|..+|||.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t   78 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCS   78 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            57999999999999999999988  66788888732         1110      11 1123456667777888899999


Q ss_pred             CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (761)
Q Consensus        87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~  166 (761)
                      ++...+|..+   +.++..+.+|+|++|.++|.+|+.+|..+      ..+.+.+.+++..++.|...|.  ++.+++..
T Consensus        79 ~~~~~~r~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~e~--~~~~id~~  147 (163)
T TIGR01313        79 ALKRHYRDIL---REAEPNLHFIYLSGDKDVILERMKARKGH------FMKADMLESQFAALEEPLADET--DVLRVDID  147 (163)
T ss_pred             ccHHHHHHHH---HhcCCCEEEEEEeCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCCCCCCCC--ceEEEECC
Confidence            9877777655   45567788899999999999999999753      3456889999988888876663  46777766


Q ss_pred             hhHHHHHH
Q 004319          167 NDVQAALD  174 (761)
Q Consensus       167 ~ei~~~l~  174 (761)
                      ...+++..
T Consensus       148 ~~~~~~~~  155 (163)
T TIGR01313       148 QPLEGVEE  155 (163)
T ss_pred             CCHHHHHH
Confidence            65555444

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.5e-12  Score=124.47  Aligned_cols=132  Identities=21%  Similarity=0.263  Sum_probs=109.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc---------------CCCCCcHHH-HHHHHHHHHHCCCc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQ-CLTSASSALKKGKS   80 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~---------------~~~~~~~~~-~~~~~~~~L~~g~~   80 (761)
                      .+-+-+|+++|++||||||+++.|.++++  +.+++.|++.               +.++.+|-. +...+..++..|+.
T Consensus         9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~--~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~   86 (191)
T KOG3354|consen    9 GPFKYVIVVMGVSGSGKSTIGKALSEELG--LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG   86 (191)
T ss_pred             CCCceeEEEEecCCCChhhHHHHHHHHhC--CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence            34456999999999999999999999999  6669999882               334445644 44666777889999


Q ss_pred             EEEeCCCCCHHHHHHHHHh-C------CCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc
Q 004319           81 VFLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL  153 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~  153 (761)
                      ||+-+..+.+.+|.-++.- +      .....+++|+|..+.|++..|+.+|..|      .+|.+.+.+|+..+|.|..
T Consensus        87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH------FMp~~lleSQf~~LE~p~~  160 (191)
T KOG3354|consen   87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH------FMPADLLESQFATLEAPDA  160 (191)
T ss_pred             EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc------cCCHHHHHHHHHhccCCCC
Confidence            9999999999999887763 2      1235689999999999999999999998      8999999999999999998


Q ss_pred             cCC
Q 004319          154 SEG  156 (761)
Q Consensus       154 ~Eg  156 (761)
                      .|.
T Consensus       161 ~e~  163 (191)
T KOG3354|consen  161 DEE  163 (191)
T ss_pred             Ccc
Confidence            773

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=6.3e-13  Score=126.53  Aligned_cols=134  Identities=22%  Similarity=0.228  Sum_probs=106.7

Q ss_pred             EcCCCCcHHHHHHHHHHHcCCCeEEEeccccc---------------CCCCCcHHHHH-HHHHHHHHCCCcEEEeCCCCC
Q 004319           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTIN---------------KGKSGTKVQCL-TSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        26 vG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~---------------~~~~~~~~~~~-~~~~~~L~~g~~VIID~tn~~   89 (761)
                      +|.+||||||++..|++.++  +.+|+.|++.               +..+..|-+.+ ..+....+.++.+||-+..++
T Consensus         1 MGVsG~GKStvg~~lA~~lg--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALK   78 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALK   78 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHH
Confidence            59999999999999999999  6679999972               23344555543 455555667777899999999


Q ss_pred             HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCChhhH
Q 004319           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei  169 (761)
                      +.+|..++.   ..-.+.+|||+.+.+++.+|+..|.+|      .++...+.+|+..+|+|...|.   |+.++.+..+
T Consensus        79 r~YRD~LR~---~~~~~~Fv~L~g~~~~i~~Rm~~R~gH------FM~~~ll~SQfa~LE~P~~de~---vi~idi~~~~  146 (161)
T COG3265          79 RSYRDLLRE---ANPGLRFVYLDGDFDLILERMKARKGH------FMPASLLDSQFATLEEPGADED---VLTIDIDQPP  146 (161)
T ss_pred             HHHHHHHhc---cCCCeEEEEecCCHHHHHHHHHhcccC------CCCHHHHHHHHHHhcCCCCCCC---EEEeeCCCCH
Confidence            999888843   333488999999999999999999998      8999999999999999998883   6666655545


Q ss_pred             HHHH
Q 004319          170 QAAL  173 (761)
Q Consensus       170 ~~~l  173 (761)
                      +++.
T Consensus       147 e~vv  150 (161)
T COG3265         147 EEVV  150 (161)
T ss_pred             HHHH
Confidence            4443

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=99.44  E-value=2.9e-14  Score=142.89  Aligned_cols=127  Identities=13%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA  265 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (761)
                      +|+-+. +.+.+.++.|++.+++.... ..-..|++.       .|++++++|.+++|+|.|-|... ...+.+....+.
T Consensus        48 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~-------iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~  118 (186)
T cd02904          48 KGEVGN-ALEKKGGKEFVEAVKELRKSNGPLEIAGAA-------VSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKN  118 (186)
T ss_pred             CCcHhH-HHHHHcCHHHHHHHHHHHHhcCCCCCCCEE-------EccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHH
Confidence            466565 78999999999999876422 111113332       57889999999999999998542 233345566667


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--C---eEEEEecccc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--N---ARLVLVDLTQ  323 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~---i~~v~vD~~~  323 (761)
                      ||. .++..+++||||||||||+||||+++||++++++|++|+++++  .   |+|+.+|..+
T Consensus       119 ~L~-~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l~~I~fv~~~~~~  180 (186)
T cd02904         119 CLA-AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKQIYFVLFDSES  180 (186)
T ss_pred             HHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEECCHHH
Confidence            777 6777899999999999999999999999999999999999853  2   4555554443

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=99.42  E-value=9.5e-13  Score=119.44  Aligned_cols=90  Identities=22%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             CCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCC
Q 004319          575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAP  653 (761)
Q Consensus       575 p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~p  653 (761)
                      +..+||++|.++||.|.+|..+||+||+|| +|+.++.+|++++...|..+.+...+.+++.+...+ +..++.|...++
T Consensus        13 ~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk-~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~   91 (103)
T cd01277          13 PSYKVYEDDHVLAFLDINPASKGHTLVIPK-KHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQ   91 (103)
T ss_pred             CCCEEEeCCCEEEEECCCCCCCeeEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCc
Confidence            456999999999999999999999999999 899999999999988888887777777766654433 223333434556


Q ss_pred             cccceeeeeecC
Q 004319          654 SMRQLHLHVISQ  665 (761)
Q Consensus       654 Sv~HLHlHVIs~  665 (761)
                      +++|+|+|||.+
T Consensus        92 ~~~H~HiHiiPR  103 (103)
T cd01277          92 VVFHVHVHVIPR  103 (103)
T ss_pred             ccCEEEEEEccC
Confidence            899999999974

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=99.41  E-value=1.2e-12  Score=123.59  Aligned_cols=89  Identities=19%  Similarity=0.340  Sum_probs=73.4

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCCc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAPS  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~pS  654 (761)
                      ..+|||+|.+++|.|.+|..++|+||||| +|+.++.+|++++...|..+.....+.+++.....+ +..++.|-.++++
T Consensus        14 ~~iv~e~~~~~~~~~~~p~~~gh~lIiPk-~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~   92 (126)
T cd01275          14 NLVFYRTKHSFAVVNLYPYNPGHVLVVPY-RHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGI   92 (126)
T ss_pred             ccEEEeCCCEEEEEcCCCCCCCcEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCC
Confidence            56999999999999999999999999999 799999999999988888888777777776654433 2233444445569


Q ss_pred             ccceeeeeecC
Q 004319          655 MRQLHLHVISQ  665 (761)
Q Consensus       655 v~HLHlHVIs~  665 (761)
                      ++|+|+|||++
T Consensus        93 v~H~HiHiiPR  103 (126)
T cd01275          93 VPHVHIHIVPR  103 (126)
T ss_pred             cCEEEEEEeCC
Confidence            99999999997

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.37  E-value=7.5e-12  Score=124.91  Aligned_cols=149  Identities=19%  Similarity=0.328  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc-cccC------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD-TINK------------------GKSGTKVQCLTSASSALKK--GKS   80 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D-~i~~------------------~~~~~~~~~~~~~~~~L~~--g~~   80 (761)
                      +|+|+|+|||||||+|++|++.++  +.+++.+ .+++                  |...+.......+.+++..  ++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~   78 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKK   78 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCc
Confidence            589999999999999999999998  7889874 4431                  1112222233445555543  578


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCc--c
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKL--S  154 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~--~  154 (761)
                      ||||+++.+..++..|..+ ......-.+|+|++|.+++.+|+.+|.... ++.++. .+.+.+.+..+   ..|..  .
T Consensus        79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~-~r~dd~-~e~~~~r~~~y~~~~~~i~~~~  156 (183)
T TIGR01359        79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS-GRVDDN-IESIKKRFRTYNEQTLPVIEHY  156 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC-CCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876 322222248999999999999999997642 223333 34444443332   22221  1


Q ss_pred             CCceEEEEcCChhhHHHHHH
Q 004319          155 EGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       155 EgFd~V~vv~~~~ei~~~l~  174 (761)
                      ..-..++.++...+++++..
T Consensus       157 ~~~~~~~~Id~~~~~~~v~~  176 (183)
T TIGR01359       157 ENKGKVKEINAEGSVEEVFE  176 (183)
T ss_pred             HhCCCEEEEECCCCHHHHHH
Confidence            11124666776655555443

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK04143 hypothetical protein; Provisional

Probab=99.36  E-value=2.2e-13  Score=143.51  Aligned_cols=123  Identities=10%  Similarity=0.067  Sum_probs=94.7

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCCC---CCCCCCcccCCCCCCCccccccccccccccccccccccc---ccccCCC
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPS---NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG---EEVKGTE  260 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  260 (761)
                      |||-+. ..+.++++.|+..+++.-..+   .+. |.+.       .|+++|++|.+++|+|.|-|..+.   ...+.+.
T Consensus       116 ~ggId~-aI~~aAG~~L~~eC~~~~~~~g~~~~~-G~a~-------iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~  186 (264)
T PRK04143        116 HDCIDN-AIHTFAGVQLRLDCAEIMTEQGRKEAT-GQAK-------ITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLA  186 (264)
T ss_pred             CCcHHH-HHHHHhChHHHHHHHHHHHHcCCCCCC-ceEE-------EecCCCCCCCEEEEECCCcccCCCCCcchHHHHH
Confidence            688887 789999999999887753211   112 2222       688999999999999999887632   2223345


Q ss_pred             CccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC-eEEEEe
Q 004319          261 NPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN-ARLVLV  319 (761)
Q Consensus       261 ~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~-i~~v~v  319 (761)
                      .-.+.|+. .....+++|||||+||||+||||+++||++++++|++|++.++. .+++++
T Consensus       187 ~cy~s~L~-~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~  245 (264)
T PRK04143        187 SCYRSCLK-LAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFN  245 (264)
T ss_pred             HHHHHHHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            55666676 56678999999999999999999999999999999999998775 455553

>PRK14527 adenylate kinase; Provisional

Probab=99.36  E-value=7.7e-12  Score=126.35  Aligned_cols=153  Identities=21%  Similarity=0.248  Sum_probs=104.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC-
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK-   77 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~-   77 (761)
                      +++.+|+|+|+|||||||+|+.|++.++  +.+++.|++. +                  +...+.+.....+...+.. 
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~--~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG--LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999998  6677775542 1                  2222333345666666664 


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---CC
Q 004319           78 -GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LP  151 (761)
Q Consensus        78 -g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---~P  151 (761)
                       +..||+|+.+.+..++..+..+ +..+..+ .+++|++|.+++.+|+.+|....+ +.++ .++.+.+.+..|.   .|
T Consensus        82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~-r~dd-~~~~~~~R~~~y~~~~~~  159 (191)
T PRK14527         82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEG-RSDD-NEETVRRRQQVYREQTQP  159 (191)
T ss_pred             CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCC-CCCC-CHHHHHHHHHHHHHHhHH
Confidence             4569999988889998888777 6666655 478999999999999999975432 3444 4556655555443   22


Q ss_pred             Cc--cCCceEEEEcCChhhHHHHHH
Q 004319          152 KL--SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       152 ~~--~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      ..  ...-..+..++....++++..
T Consensus       160 v~~~y~~~~~~~~id~~~~~~~v~~  184 (191)
T PRK14527        160 LVDYYEARGHLKRVDGLGTPDEVYA  184 (191)
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHH
Confidence            21  111124666776666665544

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.35  E-value=1.7e-11  Score=120.79  Aligned_cols=152  Identities=18%  Similarity=0.358  Sum_probs=109.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c-------------------CCCCCcHHHHHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-------------------KGKSGTKVQCLTSASSALK   76 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~-------------------~~~~~~~~~~~~~~~~~L~   76 (761)
                      ..++.||++.|.|||||-|.+.+++++++  |+|++..++ |                   +|...+.+.+..++.++|.
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~   82 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR   82 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence            45678999999999999999999999999  999997555 2                   2344455555667777775


Q ss_pred             CCCc---EEEeCCCCCHHHHHHHHHh-C-CCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH--Hhhhc
Q 004319           77 KGKS---VFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM--LQKKE  149 (761)
Q Consensus        77 ~g~~---VIID~tn~~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~--~~~~e  149 (761)
                      +...   ++||+.+...+++..|-.. . ...+   ++||||+.|+|.+|+..|+.... +.++..+.+-.|+  +.+..
T Consensus        83 ~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~f---vl~fdc~ee~~l~Rll~R~q~~~-R~DDn~esikkR~et~~~~t  158 (195)
T KOG3079|consen   83 SSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDF---VLFFDCPEETMLKRLLHRGQSNS-RSDDNEESIKKRLETYNKST  158 (195)
T ss_pred             hcCCCCeEEecCCCCChHHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHhhcccCC-CCCCchHHHHHHHHHHHHcc
Confidence            4333   9999999999999999776 4 3444   88999999999999999998643 5555544444443  22233


Q ss_pred             CCCc--cCCceEEEEcCChhhHHHHHH
Q 004319          150 LPKL--SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       150 ~P~~--~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      .|..  .|.-..+..++.+.+++++..
T Consensus       159 ~Pvi~~~e~kg~l~~i~a~~~~d~Vf~  185 (195)
T KOG3079|consen  159 LPVIEYYEKKGKLLKINAERSVDDVFE  185 (195)
T ss_pred             hHHHHHHHccCcEEEecCCCCHHHHHH
Confidence            4443  444446777777766666544

>PRK14531 adenylate kinase; Provisional

Probab=99.34  E-value=1.1e-11  Score=124.40  Aligned_cols=147  Identities=18%  Similarity=0.257  Sum_probs=96.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHH--CCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALK--KGK   79 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~--~g~   79 (761)
                      ..|+|+|+|||||||+|+.|++.++  +.+|+. |.++.                  |...+.......+..++.  .+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g--~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~   80 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHG--LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG   80 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC--CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence            3589999999999999999999998  667877 44432                  122222223344444454  356


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCc-
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKL-  153 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~-  153 (761)
                      .+|||+++.+..++..|..+ ...+..+ .+++|++|.+++.+|+..|...     ++. ++++.+.+..|   ..|.. 
T Consensus        81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~-----dD~-~e~i~~Rl~~y~~~~~pv~~  154 (183)
T PRK14531         81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA-----DDN-EAVIRNRLEVYREKTAPLID  154 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC-----CCC-HHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999988776 5555444 4899999999999999999652     233 44554444433   22322 


Q ss_pred             -cCCceEEEEcCChhhHHHHHHH
Q 004319          154 -SEGFSRITLCQNENDVQAALDT  175 (761)
Q Consensus       154 -~EgFd~V~vv~~~~ei~~~l~~  175 (761)
                       .+.-..+..++...+++++...
T Consensus       155 ~y~~~~~~~~id~~~~~~~v~~~  177 (183)
T PRK14531        155 HYRQRGLLQSVEAQGSIEAITER  177 (183)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHH
Confidence             1111246667776666655543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.31  E-value=5.4e-11  Score=118.52  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=80.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC--------------------CC-----cHHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------------SG-----TKVQCLTSASSAL   75 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~--------------------~~-----~~~~~~~~~~~~L   75 (761)
                      .+|+|+|+|||||||+|+.|.+.++..+.+++.|.++...                    ..     ........+...+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l   82 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA   82 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999987667788888663110                    00     0111335677888


Q ss_pred             HCCCcEEEeCCCC-CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           76 KKGKSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        76 ~~g~~VIID~tn~-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..|.+||+|.++. ....|..+..+  .+..+..|++.+|.++|.+|+.+|..
T Consensus        83 ~~G~~VIvD~~~~~~~~~r~~~~~~--~~~~~~~v~l~~~~~~l~~R~~~R~~  133 (175)
T cd00227          83 RAGANVIADDVFLGRAALQDCWRSF--VGLDVLWVGVRCPGEVAEGRETARGD  133 (175)
T ss_pred             hCCCcEEEeeeccCCHHHHHHHHHh--cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence            9999999999887 55666656555  33567899999999999999999975

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK14532 adenylate kinase; Provisional

Probab=99.30  E-value=4.5e-11  Score=120.15  Aligned_cols=148  Identities=16%  Similarity=0.243  Sum_probs=95.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH---CCCc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK---KGKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~---~g~~   80 (761)
                      |+|+|+|||||||+|+.|++.++  +.+++.|++ ++                  |...+.......+.+.+.   .+..
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g   80 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG   80 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            88999999999999999999998  788988544 22                  222222223333444442   4578


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CC---Cc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LP---KL  153 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P---~~  153 (761)
                      +|+|+++.+..++..+.++ ...+..+ .+|+|++|.+++.+|+..|.... .+.++.++....|+..-++  .|   .+
T Consensus        81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~-~r~dd~~~~~~~Rl~~~~~~~~~i~~~y  159 (188)
T PRK14532         81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ-GRPDDNPEVFVTRLDAYNAQTAPLLPYY  159 (188)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988777 6556544 68999999999999999996422 1333444444444322221  11   11


Q ss_pred             cCCceEEEEcCChhhHHHHHH
Q 004319          154 SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       154 ~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      .+ -..++.++...+++++..
T Consensus       160 ~~-~~~~~~id~~~~~eev~~  179 (188)
T PRK14532        160 AG-QGKLTEVDGMGSIEAVAA  179 (188)
T ss_pred             Hh-cCCEEEEECCCCHHHHHH
Confidence            22 124556666555555443

>COG0645 Predicted kinase [General function prediction only]

Probab=99.29  E-value=4.3e-11  Score=117.02  Aligned_cols=126  Identities=25%  Similarity=0.242  Sum_probs=105.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------------cHHHHHHHHHHHHHCCCcE
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------------TKVQCLTSASSALKKGKSV   81 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------------~~~~~~~~~~~~L~~g~~V   81 (761)
                      .++++.|.||+||||+|+.|.+.++  ..+|..|.+++...+                   .+..+...+...|..|.+|
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lg--A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V   79 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLG--AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV   79 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcC--ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            6899999999999999999999999  778999999643322                   1233457788899999999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~  152 (761)
                      |+|+++.+..+|..++.+ +..++.+..|.++.|.+++..|+.+|.....    +-...++..+...++...
T Consensus        80 VlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~s----DA~~~il~~q~~~~~~~~  147 (170)
T COG0645          80 VLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDAS----DATFDILRVQLAEDEPWT  147 (170)
T ss_pred             EEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcc----cchHHHHHHHHhhhCCcc
Confidence            999999999999999999 9999999999999999999999999987221    345667777777776554

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=99.28  E-value=8.4e-13  Score=127.14  Aligned_cols=104  Identities=7%  Similarity=-0.014  Sum_probs=82.5

Q ss_pred             CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc--cccCCCCccccccccCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTENPEVASVNQNG  271 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  271 (761)
                      +.+.+.++.|++.+++.+..   ..|.+.       .|++++++|.+++|+|.|-|.....  ..+.+.+-.+.|+. ..
T Consensus        35 aI~~aaG~~l~~e~~~~~~~---~~G~~~-------~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~-~a  103 (140)
T cd02905          35 KIFARAGSELREEIQTLGGC---RTGEAK-------LTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQ-LA  103 (140)
T ss_pred             HHHHHhCHHHHHHHHHhCCC---CCCcEE-------EecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHH-HH
Confidence            67888899999999887652   224443       7889999999999999999876321  11224444555566 56


Q ss_pred             CCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHH
Q 004319          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (761)
Q Consensus       272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~  308 (761)
                      ...+++||||||||||+||||+++||++++++|++|+
T Consensus       104 ~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l  140 (140)
T cd02905         104 KELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL  140 (140)
T ss_pred             HHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999995

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=99.27  E-value=2.3e-11  Score=116.86  Aligned_cols=108  Identities=13%  Similarity=0.062  Sum_probs=87.7

Q ss_pred             EEEEEcccccc-cccCCccccEEEeCCCCCCcCCCChhhHHHHHh--hc-HHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 004319          345 FFTFVGDITRL-YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSA--AG-PALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (761)
Q Consensus       345 l~v~~GDIt~~-~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~a--AG-~~l~~e~~~~~~~~~~G~avvT~l~~~~~~  420 (761)
                      |++++|||++. .      +|+|||++|..+. +|+|++.+|.++  ++ .++++.|++.  .+.+|++++++.      
T Consensus         2 i~~v~GDi~~~~~------~d~Iv~~~N~~~~-mG~Gia~~i~~~~p~~~~~~~~~~~~~--~~~~G~~~~~~~------   66 (140)
T cd02901           2 ITYVKGDLLHAPE------AAALAHAVNCDGV-MGKGIALQFKEKFPEFVEEYRAACKKK--ELLLGGVAVLER------   66 (140)
T ss_pred             eEEEcCccccCCC------CCEEEEEEcCCCc-cChHHHHHHHHHCcHHHHHHHHHHHhc--CCCCCcEEEEec------
Confidence            67899999999 5      9999999999999 999999999997  34 3667777764  466788877662      


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK  476 (761)
Q Consensus       421 ~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~  476 (761)
                      .+++++++|||+++|.|....         .....|++|++++++.|.     ||+||.++
T Consensus        67 ~~~~~~~~I~~~~t~~~~~~~---------~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG  118 (140)
T cd02901          67 GSSLVSRYIYNLPTKVHYGPK---------SRYEAIEKSLRELRAHARDNGIKSVAMPRIG  118 (140)
T ss_pred             CCCCCceEEEEeeccCCCCCC---------CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCC
Confidence            245678999999999876532         236799999999999884     89999775

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.26  E-value=4.3e-11  Score=130.78  Aligned_cols=132  Identities=20%  Similarity=0.247  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc-----CCCCC------------------------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN-----KGKSG------------------------------   62 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~-----~~~~~------------------------------   62 (761)
                      |++|+|+|||||||+++.|...+    +....+++.|++.     ++..+                              
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            57899999999999999988654    3456678888764     11100                              


Q ss_pred             ----------cHHHHH---------------------HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEE
Q 004319           63 ----------TKVQCL---------------------TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVV  110 (761)
Q Consensus        63 ----------~~~~~~---------------------~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~  110 (761)
                                .|...+                     ..+...+..+..+|+|++|+.+.+|..+..+ +.++..++.||
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~  160 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF  160 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence                      010000                     1122333455579999999999999999999 99999999999


Q ss_pred             EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCc-cCCceEE
Q 004319          111 LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKL-SEGFSRI  160 (761)
Q Consensus       111 Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~-~EgFd~V  160 (761)
                      +++|.++|++|+.+|..       .++++++..|..++|.|.. ...|+.-
T Consensus       161 ld~ple~~l~RN~~R~~-------~v~devie~m~~r~E~P~~~~nrWd~p  204 (340)
T TIGR03575       161 LDCPVESCLLRNKQRPV-------PLPDETIQLMGRKIEKPNPEKNAWEHN  204 (340)
T ss_pred             EeCCHHHHHHHHhcCCC-------CCCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence            99999999999999964       6899999999999999997 5666653

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.22  E-value=9.9e-11  Score=117.60  Aligned_cols=104  Identities=24%  Similarity=0.317  Sum_probs=80.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~---g~~   80 (761)
                      |+|+|+|||||||+|+.|++.++  +.+++.|++- +                  +...+.......+..++..   ++.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~   79 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG--LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG   79 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence            79999999999999999999998  7788876652 1                  1222233344556666664   578


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ||||+.+.+..++..+.+. ........+|+|++|.+++.+|+.+|...
T Consensus        80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~  128 (194)
T cd01428          80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC  128 (194)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence            9999999999988888777 54445567899999999999999999754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02674 adenylate kinase

Probab=99.21  E-value=1.8e-10  Score=120.74  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=82.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---   77 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---   77 (761)
                      +..|+|+|+|||||||+|+.|++.++  +.+|+.+++.                   .|...+..-....+.+++..   
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            45688999999999999999999999  8889875552                   23334444445666666654   


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ++.||+|+.+.+..+...|.++ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~  160 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWI  160 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccc
Confidence            3569999999999999988776 5445443 588899999999999999964

>TIGR01351 adk adenylate kinases

Probab=99.21  E-value=2.1e-10  Score=117.74  Aligned_cols=101  Identities=19%  Similarity=0.230  Sum_probs=77.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC----CC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK----GK   79 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~----g~   79 (761)
                      |+|+|+|||||||+|+.|++.++  +.+|+.+++ ++                  |...+.......+..++..    ++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~   79 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG--LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN   79 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence            78999999999999999999998  777887444 21                  2233334445666666655    56


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .||||+.+.+..++..+.+. ..  ....+|+|++|.+++.+|+..|..
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~~  126 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRRI  126 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCCc
Confidence            89999999999988888766 31  223589999999999999999963

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.20  E-value=2.4e-10  Score=117.71  Aligned_cols=104  Identities=16%  Similarity=0.254  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      .|+++|+|||||||+|+.|++.++  +.+++.+++ ++                  |...+.......+.+++..   +.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccC
Confidence            389999999999999999999999  788887544 21                  2222333344555556654   34


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .||||+.+.+..+...+.+. ...+..+ .+|+|++|.+++.+|+..|..
T Consensus        80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (215)
T PRK00279         80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI  129 (215)
T ss_pred             CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence            79999999998888888665 5555544 689999999999999999964

>PLN02200 adenylate kinase family protein

Probab=99.20  E-value=2.6e-10  Score=119.26  Aligned_cols=148  Identities=16%  Similarity=0.329  Sum_probs=94.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH--C
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~   77 (761)
                      .|.+|+|+|+|||||||+|+.|++.++  +.||+.+++ ++                  |...+.+.....+.+.+.  .
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g--~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~  119 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG--FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD  119 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC--CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999998  778887444 32                  122222333344445554  2


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---CCCc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LPKL  153 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---~P~~  153 (761)
                      +..+|||+...+..++..+..+ ..  ..-.+|+|++|.+++.+|+.+|...   +.+ ...+.+.+.+..|.   .|..
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~~~---r~d-d~~e~~~~Rl~~y~~~~~pv~  193 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDCPEEEMVKRVLNRNQG---RVD-DNIDTIKKRLKVFNALNLPVI  193 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHcCcCC---CCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            4569999999998888888665 21  1224889999999999999999642   122 23455555444332   2211


Q ss_pred             --cCCceEEEEcCChhhHHHHHH
Q 004319          154 --SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       154 --~EgFd~V~vv~~~~ei~~~l~  174 (761)
                        .+.-..++.++...+++++..
T Consensus       194 ~~y~~~~~~~~IDa~~~~eeV~~  216 (234)
T PLN02200        194 DYYSKKGKLYTINAVGTVDEIFE  216 (234)
T ss_pred             HHHHhcCCEEEEECCCCHHHHHH
Confidence              111124566665555554443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.19  E-value=3.9e-10  Score=112.88  Aligned_cols=136  Identities=21%  Similarity=0.221  Sum_probs=96.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCC------CcHHHHHH-HHHHHHHC-CCcEEE
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKS------GTKVQCLT-SASSALKK-GKSVFL   83 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~------~~~~~~~~-~~~~~L~~-g~~VII   83 (761)
                      .+++|+|++||||||+++.++..++  ..+++.|.+..         +..      ..+...+. .+...+.. ...+|+
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~--~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv   81 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFS--AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV   81 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC--CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence            4789999999999999999999887  45788877521         110      11222222 22222232 344555


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv  163 (761)
                       ++++...+|..+   ++.+..+.+|+|++|.+++.+|+.+|..+      ..+.+++.+++..+++|...|.  .++.+
T Consensus        82 -~s~~~~~~R~~~---r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~~~~~vl~~Q~~~~e~~~~~e~--~~~~~  149 (176)
T PRK09825         82 -CSSLKKQYRDIL---RKSSPNVHFLWLDGDYETILARMQRRAGH------FMPPDLLQSQFDALERPCADEH--DIARI  149 (176)
T ss_pred             -EEecCHHHHHHH---HhhCCCEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHcCCCCCCcC--CeEEE
Confidence             778887787766   55567789999999999999999999864      4689999999999998877664  36666


Q ss_pred             CChhhHH
Q 004319          164 QNENDVQ  170 (761)
Q Consensus       164 ~~~~ei~  170 (761)
                      +.+...+
T Consensus       150 d~~~~~~  156 (176)
T PRK09825        150 DVNHDIE  156 (176)
T ss_pred             ECCCCHH
Confidence            6655443

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=99.19  E-value=2.7e-10  Score=111.13  Aligned_cols=139  Identities=16%  Similarity=0.270  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH--HCCCcEEEeCCCCCHHHHHHHHHh
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL--KKGKSVFLDRCNLEREQRTDFVKL   99 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L--~~g~~VIID~tn~~~~~R~~~~~l   99 (761)
                      ||+-++.+||||||+|..|.+-++. |-|+..|++...   ....+.+.+.+.|  ..-..||+|..|.....|+.+.+.
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~   76 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFED   76 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH
Confidence            5788999999999999999999985 889999999433   4455667777888  555679999999999999988876


Q ss_pred             -CCC---------CceEEEEEEeC--CH----HHHHHHHHhcccccCCCC-CC----ChHHHHHHHHhhhcCCCc----c
Q 004319          100 -GGP---------EVDVHAVVLDL--PA----KLCISRSVKRIEHEGNLQ-GG----KAAAVVNRMLQKKELPKL----S  154 (761)
Q Consensus       100 -~~~---------~~~v~vV~Ld~--p~----e~~~~R~~~R~~~~~~~~-~~----v~~~vI~r~~~~~e~P~~----~  154 (761)
                       ...         ++.+.++.+..  +.    ++|.+|+.+|+++...+. ..    ....+++.+.++|++...    +
T Consensus        77 ~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~~~~pD  156 (168)
T PF08303_consen   77 VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDPDREPD  156 (168)
T ss_pred             HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence             221         33333333332  22    678899999996544432 22    245677778888887554    6


Q ss_pred             CCceEEEEcC
Q 004319          155 EGFSRITLCQ  164 (761)
Q Consensus       155 EgFd~V~vv~  164 (761)
                      .+||.|+-++
T Consensus       157 ~~FD~vI~L~  166 (168)
T PF08303_consen  157 SGFDHVIDLD  166 (168)
T ss_pred             cccCEeEeCc
Confidence            7899998775

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.19  E-value=5.4e-11  Score=121.06  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=92.0

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccCCCCC---------------cHH----HHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSG---------------TKV----QCLTSASSAL   75 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~~~~~---------------~~~----~~~~~~~~~L   75 (761)
                      ....|.+++|.|.|||||||++..+...+ ...+++|+.|.++.....               ...    .....+..++
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~   90 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAI   90 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999987 556889999999643211               000    1124567778


Q ss_pred             HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc------CCCCCCChHHHHHHHHhh-
Q 004319           76 KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE------GNLQGGKAAAVVNRMLQK-  147 (761)
Q Consensus        76 ~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~------~~~~~~v~~~vI~r~~~~-  147 (761)
                      ..+.++|+|++.........+++. ++.|+.+.++++.+|.++.+.|+.+|....      |.   .++.+.+...+.. 
T Consensus        91 ~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR---~v~~~~~~~~~~~~  167 (199)
T PF06414_consen   91 ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGR---FVPEEKHDRAYANL  167 (199)
T ss_dssp             HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT--------HCCCHCCHHHH
T ss_pred             HcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCc---CCCHHHHHHHHHHH
Confidence            899999999999888777778777 889999999999999999999999997543      21   3444433333332 


Q ss_pred             ---hcCCCccCCceEEEEcCChh
Q 004319          148 ---KELPKLSEGFSRITLCQNEN  167 (761)
Q Consensus       148 ---~e~P~~~EgFd~V~vv~~~~  167 (761)
                         +..-....-|++|.+.+...
T Consensus       168 ~~~~~~~~~~~~~d~i~v~d~~g  190 (199)
T PF06414_consen  168 PETLEALENEKLFDRITVYDRDG  190 (199)
T ss_dssp             HHHHHHHHHCT--SEEEEE-TTS
T ss_pred             HHHHHHHHhcCCCCEEEEEECCC
Confidence               11111123577888776654

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.18  E-value=3.5e-10  Score=111.77  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=90.6

Q ss_pred             EcCCCCcHHHHHHHHHHHcCCCeEEEecccc------cC---CCCC------cHHHHH-HHHHHHHHCCCc-EEEeCCCC
Q 004319           26 VGAPGSGKSTFCEHVMRSSARPWARICQDTI------NK---GKSG------TKVQCL-TSASSALKKGKS-VFLDRCNL   88 (761)
Q Consensus        26 vG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i------~~---~~~~------~~~~~~-~~~~~~L~~g~~-VIID~tn~   88 (761)
                      +|+|||||||+++.|+..++  ..+++.|.+      +.   +...      .+...+ ..+...+..+.. ||+ ++++
T Consensus         1 ~G~sGsGKSTla~~la~~l~--~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~   77 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSAL   77 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC--CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-Eecc
Confidence            59999999999999999998  667888874      21   1111      111111 222222333344 555 8888


Q ss_pred             CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCChhh
Q 004319           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNEND  168 (761)
Q Consensus        89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~e  168 (761)
                      ...+|..+   +..+..+.+|+|++|.+++.+|+.+|..+      ....+++.+++..+++|...|.  .++.++....
T Consensus        78 ~~~~r~~~---~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------~a~~~vl~~Q~~~~ep~~~~e~--~~~~id~~~~  146 (163)
T PRK11545         78 KKHYRDLL---REGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET--DVLVVDIDQP  146 (163)
T ss_pred             hHHHHHHH---HccCCCEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHcCCCCCCCC--CEEEEeCCCC
Confidence            77777555   45677899999999999999999999864      2468899999999998877663  4566665544


Q ss_pred             HH
Q 004319          169 VQ  170 (761)
Q Consensus       169 i~  170 (761)
                      .+
T Consensus       147 ~~  148 (163)
T PRK11545        147 LE  148 (163)
T ss_pred             HH
Confidence            33

>PRK13808 adenylate kinase; Provisional

Probab=99.15  E-value=4.9e-10  Score=121.96  Aligned_cols=149  Identities=14%  Similarity=0.211  Sum_probs=95.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CCc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~~   80 (761)
                      |+|+|+|||||||+|+.|++.++  +.+|+.+++ +                  .|...+.+....++.++|..   ...
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~yg--l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYG--IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            78899999999999999999999  677886544 2                  12233334444555555543   356


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc-----cCCCCCCChHHHHHHHHhhh---cC
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH-----EGNLQGGKAAAVVNRMLQKK---EL  150 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~-----~~~~~~~v~~~vI~r~~~~~---e~  150 (761)
                      ||||+.+.+..|...|..+ ...+..+ .+|+|++|.+++++|+..|...     ...+.++.++ .+.+.+..|   ..
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E-~i~kRL~~Y~~~t~  159 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPE-VLAKRLASYRAQTE  159 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHH-HHHHHHHHHHHHhH
Confidence            9999999999988877665 4444433 5889999999999999998421     0112334444 444433433   22


Q ss_pred             CCc--cCCceEEEEcCChhhHHHHHH
Q 004319          151 PKL--SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       151 P~~--~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      |..  ++.-..++.++...+++++..
T Consensus       160 PLl~~Y~e~~~lv~IDa~~siEEV~e  185 (333)
T PRK13808        160 PLVHYYSEKRKLLTVDGMMTIDEVTR  185 (333)
T ss_pred             HHHHHhhccCcEEEEECCCCHHHHHH
Confidence            322  222234667776655555544

>PRK14529 adenylate kinase; Provisional

Probab=99.15  E-value=3.8e-10  Score=116.85  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=77.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHHC--CCcE
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKK--GKSV   81 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~~--g~~V   81 (761)
                      |+|.|+|||||||+|+.|++.++  +.+++. |.+++                  |...+.+.....+.++|..  .+.|
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            78899999999999999999998  556754 33332                  2222333344666667654  4679


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |||+.+.+..|...|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c  129 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLC  129 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccc
Confidence            999999999999988765 4444333 5899999999999999999643

>PRK14530 adenylate kinase; Provisional

Probab=99.14  E-value=7.7e-10  Score=113.93  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-CCC----------------------CCcHHHHHHHHHHHHHCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGK----------------------SGTKVQCLTSASSALKKG   78 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~~~----------------------~~~~~~~~~~~~~~L~~g   78 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+|+.+++. +..                      ..+.......+...+...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~   82 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA   82 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence            488899999999999999999998  6778765542 111                      111122234455666667


Q ss_pred             CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           79 KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ..||+|+.+.+..++..+..+...+   .+|+|++|.+++.+|+..|...
T Consensus        83 ~~~IldG~pr~~~q~~~l~~~~~~d---~vI~Ld~~~~~l~~Rl~~R~~~  129 (215)
T PRK14530         83 DGFVLDGYPRNLEQAEYLESITDLD---VVLYLDVSEEELVDRLTGRRVC  129 (215)
T ss_pred             CCEEEcCCCCCHHHHHHHHHhcCCC---EEEEEeCCHHHHHHHHhCCCcC
Confidence            7899999888888877665442223   3899999999999999999653

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=99.14  E-value=6.2e-14  Score=150.51  Aligned_cols=390  Identities=25%  Similarity=0.182  Sum_probs=256.8

Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv  163 (761)
                      |.++..+. +..++........++..++..+.+.+..+...|..|.+..........++-|+..++.|...+++..+.+.
T Consensus         3 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~q~~ds~~~~~~v~~~~~~~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD   81 (422)
T KOG2134|consen    3 DRERLLRE-DSEFISYGLHEFEVHKKVTPEPAQSKDSDLVGTLVHLPQKIGGRWSSTENGMLQIFTLPKVNGGSKIIMFD   81 (422)
T ss_pred             cccccccc-chhHHhcCCcccceeecccCCccccccCcccccccccccccCCCcccccCcceEEeeccccCCCcceEEEe
Confidence            55566655 56666553344556677778888999999988776555444455566777778888889889999999998


Q ss_pred             CChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccccccccc
Q 004319          164 QNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQE  243 (761)
Q Consensus       164 ~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (761)
                      -+...+++....+...+|-|...-+|+.......+.|.||+.|+++.-+....+.-..   +                  
T Consensus        82 ~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~---~------------------  140 (422)
T KOG2134|consen   82 YDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLEL---E------------------  140 (422)
T ss_pred             cCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchH---H------------------
Confidence            8888888888888888998877788999988999999999999998877664332110   0                  


Q ss_pred             ccccccccccccccCCCCccccccccCCCCCCCC----------eeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 004319          244 ITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN  313 (761)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~  313 (761)
                                +-.+..+.|+    .    .++++          ..++|.||+-.|.+-...++..|.+.+..|+-+...
T Consensus       141 ----------~f~~Ki~~i~----a----nl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaag  202 (422)
T KOG2134|consen  141 ----------EFKKKIKAIV----A----NLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAG  202 (422)
T ss_pred             ----------HHHHHHHHHH----H----hcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhcc
Confidence                      0000000000    0    02233          445554444434444444444444444445444322


Q ss_pred             eEEE-EecccccchhhHHHHHHhhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCCh--hhHHHHHhhc
Q 004319          314 ARLV-LVDLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGG--VNAAIFSAAG  390 (761)
Q Consensus       314 i~~v-~vD~~~~s~~ls~v~~~~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gG--V~~AI~~aAG  390 (761)
                      -... ..+..+.+.......+.+-..-.....|..-.++++ +...|...+.+|++++|+.|.+.++|  |..+++.++|
T Consensus       203 r~~~~~~~kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~-~~~~~fdp~n~i~~~t~~~~~~~~~~eiV~~vgfp~sG  281 (422)
T KOG2134|consen  203 RPLDALRRKKDHSSADRKFAANAGVKFKTPEEFFLGVGVVT-WNSPGFDPKNVISRATSLCLKLDGHGEIVVAVGFPGSG  281 (422)
T ss_pred             CccccccCcccccHHHHHHHHhcCCccCCHHHHhccccccc-cCCCCCCchhHHhhhcchhcccCCCCcEEEEEecCCCC
Confidence            2211 233444443333222333222233455667778888 66666666899999999999988888  9999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCEEEecCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 004319          391 PALEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSI  470 (761)
Q Consensus       391 ~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~si  470 (761)
                      +....+.+=.+....++++.+.+.+++|+.....+.++++|+|+   +..+|+...++|--.+..++.+|.+||++..|+
T Consensus       282 ks~f~a~~~~~~~y~~vn~d~lg~~~~C~~~~~e~l~~~~sVvi---dnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~  358 (422)
T KOG2134|consen  282 KSTFAAKRVVPNGYKIVNADTLGTPQNCLLANAEALKHGKSVVI---DNTNPDAESRKYYLDCATEREIPIRCFEMNSSV  358 (422)
T ss_pred             cchhhhhhcccCceeEeecccCCCchhhHHHHHHHhhcccEEee---CCCCcchHHHHHHhhhHHHhCccceeeeeccHH
Confidence            99887766555566777887777888888888888899999998   334455444455566788999999999988777


Q ss_pred             hcccccccCCCCcccccCCCccccccccccCCccccCCcccCCCCccccccccccccCcccccccccc
Q 004319          471 VRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYEQSKKCKTQNEVGTDINLSR  538 (761)
Q Consensus       471 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (761)
                      ..-+-..+          -..++|-..+           .+-++-..++++|.+|++.|-|+......
T Consensus       359 eq~~hn~~----------fR~~~~~~~~-----------~~~dm~~~~~k~kf~~ptl~egft~i~ev  405 (422)
T KOG2134|consen  359 EQAQHNNR----------FRELSDSVKD-----------SGSDMVFNSEKSKFQKPTLDEGFTNILEV  405 (422)
T ss_pred             Hhhhcccc----------chhhccchhc-----------ccccceeehhhccccCchHhhhhhhhhcc
Confidence            77544322          1111221111           22345578999999999999888755444

>PRK14528 adenylate kinase; Provisional

Probab=99.14  E-value=6.9e-10  Score=111.97  Aligned_cols=150  Identities=21%  Similarity=0.286  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      .|++.|+|||||||+|+.|++.++  +.+++.|++. +                  |...+.......+.+++..   ..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~--~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~   80 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS--IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKN   80 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccC
Confidence            478999999999999999999998  6678776662 1                  1112222222344555543   34


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH--HhhhcCCCc--
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM--LQKKELPKL--  153 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~--~~~~e~P~~--  153 (761)
                      .+|||+...+..+...+.++ ...+. .-.+|+|++|.+++.+|+..|....+ +.++.++.+.+|+  |.....|..  
T Consensus        81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~g-r~dd~~e~i~~Rl~~y~~~~~pv~~~  159 (186)
T PRK14528         81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEG-RADDNEATIKNRLDNYNKKTLPLLDF  159 (186)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccC-CCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            69999998988888877766 43333 33588999999999999999975433 4455555544444  222233332  


Q ss_pred             cCCceEEEEcCChhhHHHHHH
Q 004319          154 SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       154 ~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      .+.-..+..++....++++..
T Consensus       160 y~~~~~~~~i~~~~~~~~v~~  180 (186)
T PRK14528        160 YAAQKKLSQVNGVGSLEEVTS  180 (186)
T ss_pred             HHhCCCEEEEECCCCHHHHHH
Confidence            111124666666656655443

>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1

Probab=99.13  E-value=2.8e-10  Score=125.14  Aligned_cols=130  Identities=14%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL  643 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~  643 (761)
                      |.++++.-...+..+|||||.++||.|.+|..++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..+  .
T Consensus       198 fcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPK-rH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~--~  274 (347)
T TIGR00209       198 LVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPK-AHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS--F  274 (347)
T ss_pred             HHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeec-cCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC--C
Confidence            34555443334567999999999999999999999999999 89999999999998888887777666665554332  1


Q ss_pred             eeeecccCCC------cccceeeeeecCCccccc-ccccccccccCccccc---CHHHHHHHHHh
Q 004319          644 AFRLGYHSAP------SMRQLHLHVISQDFNSKH-LKNKKHWNSFNTAFFC---DSVDVLEEISN  698 (761)
Q Consensus       644 ~~~~G~ha~p------Sv~HLHlHVIs~d~~s~~-lk~kkH~nsF~t~fFv---~~~~v~~~l~~  698 (761)
                      -+++|+|..|      ..+|+||||+++-..+.. +|..--|-.  |+.|+   +-++..+.|++
T Consensus       275 pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~--~g~~in~~~PE~aA~~LR~  337 (347)
T TIGR00209       275 PYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEM--LGETQRDLTAEQAAERLRA  337 (347)
T ss_pred             CcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhh--hcCccCCCCHHHHHHHHHh
Confidence            2678888776      557899999998554543 222222222  67776   34556666644

This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.

>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]

Probab=99.13  E-value=4e-10  Score=104.75  Aligned_cols=109  Identities=21%  Similarity=0.299  Sum_probs=88.6

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-CceeeeecccCCCc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-ASLAFRLGYHSAPS  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~~~~~~G~ha~pS  654 (761)
                      +.|+|.++..++|-.+.|.-++|+||+|+ +-...+.||+.++..-|..-.+++.+.+++..... .+..++-|-.|+|+
T Consensus        17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~-R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQT   95 (150)
T KOG3379|consen   17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPL-RVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQT   95 (150)
T ss_pred             ceEEEeccceEEEEeccccccceEEEecc-ccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcc
Confidence            56999999999999999999999999999 68999999999987766666666667777665543 34568899999999


Q ss_pred             ccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319          655 MRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK  701 (761)
Q Consensus       655 v~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~  701 (761)
                      |+|+|+|||.+         ++       .=|.+=|+++.+|+.+++
T Consensus        96 VpHvHvHIlPR---------~~-------gDf~~Nd~IY~~L~~~~~  126 (150)
T KOG3379|consen   96 VPHVHVHILPR---------KA-------GDFGDNDLIYDELDKHEK  126 (150)
T ss_pred             cceeEEEEccc---------cc-------cccccchHHHHHHHhccc
Confidence            99999999985         22       445566788888876544

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.11  E-value=4.2e-10  Score=109.50  Aligned_cols=101  Identities=26%  Similarity=0.324  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC---C----CcHHHH----HHHHHHHHHCCCcEEEeCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---S----GTKVQC----LTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~---~----~~~~~~----~~~~~~~L~~g~~VIID~tn   87 (761)
                      +|+|+|+|||||||+|+.|+..+   +..+.+++.|.++...   .    ..+...    ...+...+..|..||+|.++
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            48999999999999999999887   4456778888776311   1    111111    12334456789999999999


Q ss_pred             CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        88 ~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      ....+|..+.++ .  +..+.+|+|++|.++|.+|..+
T Consensus        81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            999999988888 5  6788999999999999999644

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK02496 adk adenylate kinase; Provisional

Probab=99.11  E-value=1e-09  Score=110.04  Aligned_cols=146  Identities=20%  Similarity=0.246  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      -|+|.|+|||||||+|+.|++.++  +.+++.|++ +                  ++...+.......+..++..   ..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH--IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence            378899999999999999999998  667876444 2                  12222223333455555542   35


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC---CCc-
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL---PKL-  153 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~---P~~-  153 (761)
                      .||||+...+..+...+..+ ...+. ...+|+|++|.+++.+|+..|...      +..++.+.+.+..|..   |.. 
T Consensus        81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------dd~~~~~~~r~~~y~~~~~~v~~  154 (184)
T PRK02496         81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK------DDTEEVIRRRLEVYREQTAPLID  154 (184)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            69999998888887666554 33332 345899999999999999999653      3345666666555432   221 


Q ss_pred             -cCCceEEEEcCChhhHHHHHHH
Q 004319          154 -SEGFSRITLCQNENDVQAALDT  175 (761)
Q Consensus       154 -~EgFd~V~vv~~~~ei~~~l~~  175 (761)
                       .+.-..++.++...+++++...
T Consensus       155 ~~~~~~~~~~Ida~~~~~~V~~~  177 (184)
T PRK02496        155 YYRDRQKLLTIDGNQSVEAVTTE  177 (184)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHH
Confidence             1111245667776666665543

>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional

Probab=99.10  E-value=5.5e-10  Score=122.80  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL  643 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~  643 (761)
                      |.+++..-......+|||||.+++|.|.+|..++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..++  
T Consensus       198 fcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPK-rH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~--  274 (346)
T PRK11720        198 LVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPK-AHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSF--  274 (346)
T ss_pred             HHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecc-cCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC--
Confidence            34455432223357999999999999999999999999999 899999999999988888777766666666553321  


Q ss_pred             eeeecccCCC------cccceeeeeecCCcccccccccccccccC-ccccc---CHHHHHHHHHh
Q 004319          644 AFRLGYHSAP------SMRQLHLHVISQDFNSKHLKNKKHWNSFN-TAFFC---DSVDVLEEISN  698 (761)
Q Consensus       644 ~~~~G~ha~p------Sv~HLHlHVIs~d~~s~~lk~kkH~nsF~-t~fFv---~~~~v~~~l~~  698 (761)
                      .+++|+|..|      .++|+|+||+++-..+.. |. |-...|- ++.|+   +-++..+.|++
T Consensus       275 pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~-~~-k~~aGfE~~g~~in~~~PE~aA~~LR~  337 (346)
T PRK11720        275 PYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSAT-VR-KFMVGYEMLAETQRDLTAEQAAERLRA  337 (346)
T ss_pred             CCceeEEecccCCCCCeeEEEEEEEeCCccCccc-cc-cceeeeecccCccCCCCHHHHHHHHhh
Confidence            2688888776      589999999987544433 12 2112221 46665   45666666654

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.09  E-value=1.4e-11  Score=119.75  Aligned_cols=109  Identities=9%  Similarity=0.008  Sum_probs=81.7

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhCCCC--CCCCCCcccCCCCCCCccccccccccccccccccccccc---ccccCCCCc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVDAPS--NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG---EEVKGTENP  262 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  262 (761)
                      |+.+. .++.+.++.|++.+++.-+..  ....|++.       .|+++|++|.+++|+|.|-|..+.   +..+.+...
T Consensus        34 ggv~~-aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~-------~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~  105 (147)
T cd02906          34 RCIDN-IIHTFAGPQLRQACFELMTKQGREEPTGQAK-------ITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKC  105 (147)
T ss_pred             CcHHH-HHHHHhCHHHHHHHHHHHHhcCCCCCCCeEE-------EEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHH
Confidence            44444 677788899999887763211  11123332       688999999999999999887532   233345666


Q ss_pred             cccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (761)
Q Consensus       263 ~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~  305 (761)
                      ++.|+. .....+++|||||+||||+||||+++||++++++|+
T Consensus       106 ~~~~L~-~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~  147 (147)
T cd02906         106 YLSCLD-LAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL  147 (147)
T ss_pred             HHHHHH-HHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence            677776 566789999999999999999999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.09  E-value=2.3e-09  Score=107.03  Aligned_cols=149  Identities=19%  Similarity=0.293  Sum_probs=89.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHH----HHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTS----ASSALK   76 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~----~~~~L~   76 (761)
                      ..+|+|+|+|||||||+|+.|++.++  +.+++.+++ +.                  +...+.......    +...+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG   80 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence            35899999999999999999999998  667877443 21                  111122222222    233345


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CCCc-
Q 004319           77 KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKL-  153 (761)
Q Consensus        77 ~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P~~-  153 (761)
                      .+..||+|+.+....+...+...  ......+|+|++|.+++.+|+.+|.... .+.+..++....++...++  .|.. 
T Consensus        81 ~~~~~i~dg~~~~~~q~~~~~~~--~~~~~~vi~l~~~~~~~~~Rl~~R~~~~-~r~d~~~~~~~~r~~~~~~~~~~~~~  157 (188)
T TIGR01360        81 TSKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSEDTMVKRLLKRAETS-GRVDDNEKTIKKRLETYYKATEPVIA  157 (188)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHc--CCCCCEEEEEECCHHHHHHHHHcccccC-CCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence            67889999988776666555332  2223458999999999999999997522 2333334433344432221  1211 


Q ss_pred             -cCCceEEEEcCChhhHHHHH
Q 004319          154 -SEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       154 -~EgFd~V~vv~~~~ei~~~l  173 (761)
                       .+....++.++....++++.
T Consensus       158 ~y~~~~~~~~id~~~~~~~v~  178 (188)
T TIGR01360       158 YYETKGKLRKINAEGTVDDVF  178 (188)
T ss_pred             HHHhCCCEEEEECCCCHHHHH
Confidence             11112455666655555443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.08  E-value=5.8e-11  Score=117.57  Aligned_cols=118  Identities=10%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccccccccccccccccccc-ccccCCCCccccccccCCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGS  272 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  272 (761)
                      +.....++.+++.+++....   ..|.+.       .|+++++.|.+++|+|.|-|..+. ++...+.+.++.|+. ...
T Consensus        34 ai~~~~G~~l~~e~~~~~~~---~~G~~v-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~-~a~  102 (165)
T cd02908          34 AIHRAAGPELLEECRELRGC---PTGEAV-------ITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLE-LAR  102 (165)
T ss_pred             HHHHHhCHHHHHHHHHhCCC---CCCCEE-------EeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHH-HHH
Confidence            67778889999999987654   223332       678899999999999999887531 333445666777776 556


Q ss_pred             CCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEeccc
Q 004319          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLT  322 (761)
Q Consensus       273 ~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~  322 (761)
                      ..+++|||||+||||+||||.++||+++++++++|++....   ++|+..|.+
T Consensus       103 ~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v~~~~~  155 (165)
T cd02908         103 ENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVCFSEE  155 (165)
T ss_pred             HcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence            68999999999999999999999999999999999987433   444444433

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>PRK06217 hypothetical protein; Validated

Probab=99.08  E-value=2.5e-09  Score=107.35  Aligned_cols=97  Identities=18%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC-------CCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG-------KSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRT   94 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~-------~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~   94 (761)
                      .|+|+|.|||||||+|++|++.++  +.+++.|.+...       ...+.+.....+...+..+..+|||+....  .+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~--~~~   78 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD--IPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG--WGD   78 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH--HHH
Confidence            499999999999999999999998  567888877421       122334445566666767788999984432  222


Q ss_pred             HHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           95 DFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        95 ~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ...  ...+.   +|+|++|.++|.+|+..|..
T Consensus        79 ~~~--~~~d~---~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         79 PLE--PLFDL---VVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             HHH--hhCCE---EEEEECCHHHHHHHHHcCcc
Confidence            111  33444   78999999999999999974

>PLN02459 probable adenylate kinase

Probab=99.07  E-value=2.1e-09  Score=113.41  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=79.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---   77 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---   77 (761)
                      +..|+|+|+|||||||+|+.|++.++  +.+|+..++ +                  +|...+.......+.++|..   
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~  106 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE  106 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence            34578899999999999999999998  778886444 2                  34444555555667777754   


Q ss_pred             --CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           78 --GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        78 --g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                        .+.||||+.+.+..|...|-.+..   .-.+|+|++|.+++.+|+..|...
T Consensus       107 ~~~~g~iLDGFPRt~~Qa~~Le~~~~---id~Vi~L~v~d~~l~~Rl~gR~~~  156 (261)
T PLN02459        107 EGESGFILDGFPRTVRQAEILEGVTD---IDLVVNLKLREEVLVEKCLGRRIC  156 (261)
T ss_pred             cCCceEEEeCCCCCHHHHHHHHhcCC---CCEEEEEECCHHHHHHHhhccccc
Confidence              356999999999999887755421   134899999999999999999643

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.06  E-value=1.5e-09  Score=106.21  Aligned_cols=102  Identities=23%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----cH---HH----HHHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---VQ----CLTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~~---~~----~~~~~~~~L~~g~~VIID   84 (761)
                      ++.+|+|+|+|||||||+|++|.+.+   +....+++.|.++.+...    +.   .+    ....+.....+|..||++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            46899999999999999999998775   467888999999865432    11   11    224555566789999999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      .....++.|...+++ ...  .+..||+++|.++|.+|-
T Consensus        81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHT
T ss_pred             eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhC
Confidence            999999999999888 433  678899999999999995

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14526 adenylate kinase; Provisional

Probab=99.04  E-value=3.5e-09  Score=109.00  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=73.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC---CCc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK---GKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~---g~~   80 (761)
                      |+|+|+|||||||+++.|++.++  +.+++.+++ ++                  |...+.......+.++|..   .+.
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g   80 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN   80 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence            77899999999999999999988  667875554 21                  2222222233555566643   467


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ||||+.+.+..+...+... ..    ..+++|++|.+++.+|+..|...
T Consensus        81 ~ilDGfPR~~~Qa~~l~~~~~~----~~vi~l~~~~~~~~~Rl~~R~~~  125 (211)
T PRK14526         81 FILDGFPRNINQAKALDKFLPN----IKIINFLIDEELLIKRLSGRRIC  125 (211)
T ss_pred             EEEECCCCCHHHHHHHHHhcCC----CEEEEEECCHHHHHHHHHCCCcc
Confidence            9999999999998877665 22    24678899999999999999754

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.03  E-value=8.7e-11  Score=117.40  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=90.6

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCccccccccccccccccccccccc--ccccCCCCccc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTENPEV  264 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  264 (761)
                      |..+. ......++.+++.++..-.. .....|.+.       .|.+.++.|.+++|.|.|-|..+.  +....+...++
T Consensus        31 ggv~~-ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~-------~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~  102 (175)
T cd02907          31 GGLAL-AIVKAGGPEIQEESDEYVRKNGPVPTGEVV-------VTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAIL  102 (175)
T ss_pred             CCHHH-HHHHHHhHHHHHHHHHHHHhcCCCCCCcEE-------EecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHH
Confidence            44443 66777888888888764211 111223333       677889999999999999887643  22233555666


Q ss_pred             cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC----eEEEEecccc
Q 004319          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN----ARLVLVDLTQ  323 (761)
Q Consensus       265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~----i~~v~vD~~~  323 (761)
                      .|+. .....+++|||||+||||++|||++++|+++++++++|+.+++.    |+|+..|.+.
T Consensus       103 ~~L~-~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~~~~~  164 (175)
T cd02907         103 NSLR-KAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDYDEQT  164 (175)
T ss_pred             HHHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEECCHHH
Confidence            6666 45567999999999999999999999999999999999998632    4555544433

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.03  E-value=5e-09  Score=109.16  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=76.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHHC----
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK----   77 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~~----   77 (761)
                      .-|+|+|+|||||||+|+.|++.++  +.+|+.|++..                   |...+.+.....+...+..    
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            4499999999999999999999999  77898877631                   2222333344555555543    


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 -g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       ...||+|+.+.+..++..+....   -...+++|++|.+++.+|+..|..
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~~---~~~~vi~l~~~~~~~~~Rl~~Rr~  132 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKIT---NIDLFVNIYLPRNILIKKLLGRRI  132 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHcCcC
Confidence             46799999999999988775442   223488999999999999999964

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.02  E-value=8e-11  Score=113.07  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (761)
                      ....+.++.+++.+++......  .|++.       -|++.+++|.+++|.+.+-|.++  ....+.+.++.|+. ....
T Consensus        36 aI~~~~G~~l~~~~~~~~~~~~--~G~~~-------vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~-~a~~  103 (137)
T cd02903          36 AILRKAGPELQKELDKAKLGQT--VGSVI-------VTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECLE-KCEE  103 (137)
T ss_pred             HHHHhccHHHHHHHHHHcCCCC--CCeEE-------EecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHHH-HHHH
Confidence            4567777889999987655432  24443       67788999999999999988863  23346666778877 6667


Q ss_pred             CCCCeeecccccccCCCCCHHHHHHHHHHHHHHH
Q 004319          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEF  307 (761)
Q Consensus       274 ~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f  307 (761)
                      .+++|||||+||||+||||+++||++++++|.+|
T Consensus       104 ~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f  137 (137)
T cd02903         104 LSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF  137 (137)
T ss_pred             CCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence            8999999999999999999999999999999987

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.01  E-value=6.2e-09  Score=104.39  Aligned_cols=145  Identities=19%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-------------------CCcHHHHHHHHHHHHHCC---C
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-------------------SGTKVQCLTSASSALKKG---K   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-------------------~~~~~~~~~~~~~~L~~g---~   79 (761)
                      -|+++|+|||||||+|++|++.++  +.|++.+++....                   ..+..-....+..++...   .
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~   79 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA   79 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence            389999999999999999999987  8899976663211                   111222223444444432   2


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cCCCcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---ELPKLS  154 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~P~~~  154 (761)
                      .+|+|+.+.+..+-..+.++ ...+.. -.++.++.+.+.+..|...|..    +.++.++.+-.| +..+   ..|. .
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~----r~dd~~~~~~~R-~~~y~~~~~pl-i  153 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV----REDDNEETVKKR-LKVYHEQTAPL-I  153 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc----cccCCHHHHHHH-HHHHHhcccch-h
Confidence            69999999998887777766 555543 3678899999999999999974    123444444444 4433   3333 2


Q ss_pred             CCceEEEEcCChhhHHHHHHHh
Q 004319          155 EGFSRITLCQNENDVQAALDTY  176 (761)
Q Consensus       155 EgFd~V~vv~~~~ei~~~l~~~  176 (761)
                      +-+.  ..++...+++++...+
T Consensus       154 ~~y~--~~id~~~~i~~v~~~i  173 (178)
T COG0563         154 EYYS--VTIDGSGEIEEVLADI  173 (178)
T ss_pred             hhhe--eeccCCCCHHHHHHHH
Confidence            2222  5667777777766554

>PRK08118 topology modulation protein; Reviewed

Probab=99.00  E-value=1.5e-09  Score=107.74  Aligned_cols=96  Identities=23%  Similarity=0.356  Sum_probs=65.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCCCC-cHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKSG-TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~~~-~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~   98 (761)
                      -|+|+|+|||||||+|++|++.++  +.+++.|.+.  .++.. +.+.....+.+ +..+..+|+|+. +.......+  
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~l~~~~~w~~~~~~~~~~~~~~-~~~~~~wVidG~-~~~~~~~~l--   76 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN--IPVHHLDALFWKPNWEGVPKEEQITVQNE-LVKEDEWIIDGN-YGGTMDIRL--   76 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CCceecchhhcccCCcCCCHHHHHHHHHH-HhcCCCEEEeCC-cchHHHHHH--
Confidence            389999999999999999999999  4456777663  33332 33333333334 444578999994 332211111  


Q ss_pred             hCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        99 l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       ...+.   +|+|++|.++|..|+.+|.-
T Consensus        77 -~~~d~---vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         77 -NAADT---IIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             -HhCCE---EEEEeCCHHHHHHHHHHHHH
Confidence             22333   89999999999999999954

>PRK07261 topology modulation protein; Provisional

Probab=99.00  E-value=1.7e-09  Score=107.66  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCCC-CcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGKS-GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~~-~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~   98 (761)
                      -|+|+|+|||||||||+.|++.++  ..+++.|.+.  .++. .+.++....+...+..+. +|+|+++........+  
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l--   76 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN--CPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM--   76 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC--CCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--
Confidence            389999999999999999999988  4457777664  2222 234455666777777665 9999975542322222  


Q ss_pred             hCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           99 LGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        99 l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                       ...+.   +|+|++|.++|..|+.+|.-.
T Consensus        77 -~~ad~---vI~Ld~p~~~~~~R~lkR~~~  102 (171)
T PRK07261         77 -QEADQ---IIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             -HHCCE---EEEEcCCHHHHHHHHHHHHHH
Confidence             22333   899999999999999999754

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.98  E-value=3.1e-09  Score=107.51  Aligned_cols=136  Identities=21%  Similarity=0.313  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEeccc-cc---CCCCCc-------HHHHHHHHHHHHHCCCcEEEeCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDT-IN---KGKSGT-------KVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~-i~---~~~~~~-------~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      ||+++|.|.|||||.|+.|.+.+.    ...+.|..|. +.   +..+++       +-.+...+.+.|..+..||+|.-
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Dsl   82 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSL   82 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEecc
Confidence            789999999999999999887654    2233333332 21   111221       12244678889999999999999


Q ss_pred             CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (761)
Q Consensus        87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V  160 (761)
                      |+-+..|..+..+ +..+...++|+..+|.|+|++.+.+|....  . +..+.++++....+||+|.....||.-
T Consensus        83 NyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~--e-~gy~~e~le~L~~RyEeP~s~NRWDsP  154 (281)
T KOG3062|consen   83 NYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPG--E-DGYDDELLEALVQRYEEPNSRNRWDSP  154 (281)
T ss_pred             cccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCC--C-CCCCHHHHHHHHHHhhCCCccccccCc
Confidence            9999999999999 888888999999999999999998887632  1 357899999999999999998888863

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.97  E-value=7.9e-10  Score=119.32  Aligned_cols=142  Identities=27%  Similarity=0.406  Sum_probs=121.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDF   96 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~   96 (761)
                      .+.+.+|+++|.||||||||+.......+  +.++++|.+     +++..|.....++|..++.||+|.||.....|..|
T Consensus       266 ~~~~eiV~~vgfp~sGks~f~a~~~~~~~--y~~vn~d~l-----g~~~~C~~~~~e~l~~~~sVvidnt~pd~~sr~~~  338 (422)
T KOG2134|consen  266 DGHGEIVVAVGFPGSGKSTFAAKRVVPNG--YKIVNADTL-----GTPQNCLLANAEALKHGKSVVIDNTNPDAESRKYY  338 (422)
T ss_pred             CCCCcEEEEEecCCCCcchhhhhhcccCc--eeEeecccC-----CCchhhHHHHHHHhhcccEEeeCCCCcchHHHHHH
Confidence            34458999999999999999999887776  888999998     88899999999999999999999999999999999


Q ss_pred             HHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319           97 VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (761)
Q Consensus        97 ~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~  166 (761)
                      ++. ....+.+.++.+.++.+.....+..|.-+.. .....++-+++.+.++|+.|.+.|||..+..+.-.
T Consensus       339 ~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~-~~~~~~dm~~~~~k~kf~~ptl~egft~i~ev~f~  408 (422)
T KOG2134|consen  339 LDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDS-VKDSGSDMVFNSEKSKFQKPTLDEGFTNILEVPFK  408 (422)
T ss_pred             hhhHHHhCccceeeeeccHHHhhhccccchhhccc-hhcccccceeehhhccccCchHhhhhhhhhccchh
Confidence            999 9999999999999999988888877764321 12245566777788889999999999988777654

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.97  E-value=4.2e-09  Score=104.15  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------CCCCcHHHHHHHHHHHHHCCCcEEEeC--
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------GKSGTKVQCLTSASSALKKGKSVFLDR--   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------~~~~~~~~~~~~~~~~L~~g~~VIID~--   85 (761)
                      -|+|+|++||||||+++.|++.++  +.+++.|.+-+              |+..-+....+.+.+.+..+..||--+  
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~--~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG   81 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALN--LPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG   81 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcC--CCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence            489999999999999999999999  45588887732              222222222244445555553444443  


Q ss_pred             CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (761)
Q Consensus        86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~  164 (761)
                      ...+...|..+   +..+.   +|||++|.+++.+|+.....+ +.+....+.+.+...+.+.. |.+.|--+.++..+
T Consensus        82 ~v~~~enr~~l---~~~g~---vv~L~~~~e~l~~Rl~~~~~R-Pll~~~~~~~~l~~L~~~R~-~~Y~e~a~~~~~~~  152 (172)
T COG0703          82 AVLSEENRNLL---KKRGI---VVYLDAPFETLYERLQRDRKR-PLLQTEDPREELEELLEERQ-PLYREVADFIIDTD  152 (172)
T ss_pred             cccCHHHHHHH---HhCCe---EEEEeCCHHHHHHHhccccCC-CcccCCChHHHHHHHHHHHH-HHHHHhCcEEecCC
Confidence            55666777766   44454   999999999999999844433 33455566565666555443 33344333343333

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.96  E-value=7.1e-09  Score=103.98  Aligned_cols=105  Identities=19%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC-----CCc--HHH----HHHHHHHHHHCCCcE
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGT--KVQ----CLTSASSALKKGKSV   81 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~-----~~~--~~~----~~~~~~~~L~~g~~V   81 (761)
                      ...++.+|+|+|+|||||||+|+.|...+.   ....+++.|.++...     +..  +..    ....+...+..|..|
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V   93 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV   93 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            446778999999999999999999998763   345678888886421     111  111    123445567889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |+|+++....+|..+..+ ...  .+.+|++++|.++|.+|.
T Consensus        94 I~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~  133 (184)
T TIGR00455        94 ITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRD  133 (184)
T ss_pred             EEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhC
Confidence            999999999999988888 543  577899999999999994

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=98.94  E-value=2.7e-09  Score=117.02  Aligned_cols=99  Identities=13%  Similarity=0.280  Sum_probs=77.0

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL  643 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~  643 (761)
                      +.+++..-......+||+||.+++|.|.+|..++|+||||| +|+.++.+|++++...|.+++..+...+.+.+...  .
T Consensus       188 fcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPK-rH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~--~  264 (329)
T cd00608         188 LCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPK-RHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS--F  264 (329)
T ss_pred             HHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecC-CCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC--C
Confidence            33444432223467999999999999999999999999999 89999999999998888877777665555554311  2


Q ss_pred             eeeecccCCC--------cccceeeeeecC
Q 004319          644 AFRLGYHSAP--------SMRQLHLHVISQ  665 (761)
Q Consensus       644 ~~~~G~ha~p--------Sv~HLHlHVIs~  665 (761)
                      .+++|+|..|        .++|+|+|++.+
T Consensus       265 pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr  294 (329)
T cd00608         265 PYSMGWHQAPTGGKELENWYYHWHFEIPPR  294 (329)
T ss_pred             CeEEEEeccCCCCCcCCcceEEEEEEeCCC
Confidence            3788887655        678999999986

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.94  E-value=6.8e-09  Score=100.79  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=71.9

Q ss_pred             EEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-------------------cCCCCCcHHHHHHHHHHHHHC---CCcEE
Q 004319           25 MVGAPGSGKSTFCEHVMRSSARPWARICQDTI-------------------NKGKSGTKVQCLTSASSALKK---GKSVF   82 (761)
Q Consensus        25 LvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-------------------~~~~~~~~~~~~~~~~~~L~~---g~~VI   82 (761)
                      |+|+|||||||+|++|++.++  +.+|+.+++                   .+|...+.+.....+..++..   .+.||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceee
Confidence            689999999999999999998  888986443                   234444444555666666654   47799


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHh
Q 004319           83 LDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~  124 (761)
                      ||+.+.+..+...|.++ ...+.. -.+|+|++|.+.+.+|+.+
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            99999999998888774 323333 3789999999999999887

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.91  E-value=7.8e-09  Score=102.80  Aligned_cols=141  Identities=16%  Similarity=0.233  Sum_probs=94.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-------------------EEEecccc----cCCCCCcHHH--------H
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-------------------ARICQDTI----NKGKSGTKVQ--------C   67 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-------------------~~I~~D~i----~~~~~~~~~~--------~   67 (761)
                      +..|++|+||+|+||||+.++|.+..+..+                   .+++.+.+    ..+.+..|.+        -
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~   82 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS   82 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence            457999999999999999999998864211                   11222221    1122222211        1


Q ss_pred             HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      ...+.+.+..|+.||+|-      +.+..+.+ .... .+..||+.+| .+.+.+|+..|..       +..+.+-.||.
T Consensus        83 ~~~ve~~~~~G~~vildI------d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgt-------ds~e~I~~Rl~  148 (191)
T COG0194          83 REPVEQALAEGKDVILDI------DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGT-------DSEEVIARRLE  148 (191)
T ss_pred             HHHHHHHHhcCCeEEEEE------ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCC-------CCHHHHHHHHH
Confidence            256778899999999998      55666666 4444 5667777655 6899999999987       45566667776


Q ss_pred             hhhcCCCccCCceEEEEcCChhhHHHHH
Q 004319          146 QKKELPKLSEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~~ei~~~l  173 (761)
                      +...+-.....||.|++.++.+.+...+
T Consensus       149 ~a~~Ei~~~~~fdyvivNdd~e~a~~~l  176 (191)
T COG0194         149 NAKKEISHADEFDYVIVNDDLEKALEEL  176 (191)
T ss_pred             HHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence            6655555555599998887765554433

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.2e-08  Score=100.43  Aligned_cols=106  Identities=23%  Similarity=0.274  Sum_probs=80.0

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----cH---HH----HHHHHHHHHHCCCc
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----TK---VQ----CLTSASSALKKGKS   80 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~~---~~----~~~~~~~~L~~g~~   80 (761)
                      ....++.+|+++|++||||||+|.+|.+++   |.....++.|.++.+...    +.   .+    ....+......|-.
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~i   97 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLI   97 (197)
T ss_pred             HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeE
Confidence            455678999999999999999999998765   456677899999865431    22   11    22344455567777


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      +|+......+..|+..+++ .+.  .+.-||+++|.++|.+|-
T Consensus        98 viva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          98 VIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             EEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcC
Confidence            8888888888999988888 432  577899999999998885

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.90  E-value=9.8e-09  Score=103.70  Aligned_cols=138  Identities=14%  Similarity=0.134  Sum_probs=83.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCe--------------------EEEecccc----cCCCCCcHHH-------
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW--------------------ARICQDTI----NKGKSGTKVQ-------   66 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~--------------------~~I~~D~i----~~~~~~~~~~-------   66 (761)
                      .++.+|+|+|||||||||++++|.+.+...+                    ..++.+.+    ..+.+..+..       
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            4678999999999999999999988764211                    11111111    0111111100       


Q ss_pred             -HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHH
Q 004319           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (761)
Q Consensus        67 -~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r  143 (761)
                       -...+.+.+..|+.+|+|.      +++.+..+ ..+...+.+||+.+| .+++.+|+.+|...       ..+++-.+
T Consensus        82 t~~~~i~~~~~~g~~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~-------s~e~i~~R  148 (186)
T PRK14737         82 TPKAFIEDAFKEGRSAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD-------SEESIEKR  148 (186)
T ss_pred             CcHHHHHHHHHcCCeEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC-------CHHHHHHH
Confidence             1144677889999999998      45555555 434433457788775 69999999998752       33444444


Q ss_pred             HHhhhcCCCccCCceEEEEcCChhh
Q 004319          144 MLQKKELPKLSEGFSRITLCQNEND  168 (761)
Q Consensus       144 ~~~~~e~P~~~EgFd~V~vv~~~~e  168 (761)
                      +.++..+-.....||.|++.++.++
T Consensus       149 l~~~~~e~~~~~~~D~vI~N~dle~  173 (186)
T PRK14737        149 IENGIIELDEANEFDYKIINDDLED  173 (186)
T ss_pred             HHHHHHHHhhhccCCEEEECcCHHH
Confidence            4444322222455788777664333

>PRK00431 RNase III inhibitor; Provisional

Probab=98.90  E-value=9.7e-10  Score=110.03  Aligned_cols=122  Identities=12%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             CCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccc-cccCCCCccccccccCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVASVNQNG  271 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  271 (761)
                      +.....++.+++.+++.-.. .....|.+.       .|++.++.|.+++|+|.|-|..... ....+...++.|+. ..
T Consensus        37 aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~-------~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~-~a  108 (177)
T PRK00431         37 AIHRAAGPEILEECRELRQQQGPCPTGEAV-------ITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLR-LA  108 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCeEE-------EecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHH-HH
Confidence            56667778888888876222 122224443       5778899999999999998875321 12334555566665 45


Q ss_pred             CCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEecccc
Q 004319          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLTQ  323 (761)
Q Consensus       272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~~  323 (761)
                      ...+++|||||+||||+||||.++||+++++++.+|++....   ++|+..|.++
T Consensus       109 ~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~~v~~~~~~  163 (177)
T PRK00431        109 AELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFVCYDEEA  163 (177)
T ss_pred             HHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEEEEECCHHH
Confidence            567999999999999999999999999999999999876654   4444444333

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.86  E-value=4.1e-08  Score=98.82  Aligned_cols=101  Identities=14%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCC-CcHHHH----------------------HHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKS-GTKVQC----------------------LTSA   71 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~-~~~~~~----------------------~~~~   71 (761)
                      .+++|+|++||||||+++.|+...+..+.+......+.      ... ....+.                      ...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~   82 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI   82 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence            47999999999999999999887653332211111110      000 000000                      0235


Q ss_pred             HHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           72 SSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+.++.|..||+|+.      +..+..+ +..+....+|+|++|.+++.+|+..|.+
T Consensus        83 ~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~  133 (186)
T PRK10078         83 DLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR  133 (186)
T ss_pred             HHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence            567788999999874      3333333 3345567789999999999999998854

>PRK06547 hypothetical protein; Provisional

Probab=98.85  E-value=1.7e-08  Score=100.77  Aligned_cols=106  Identities=21%  Similarity=0.258  Sum_probs=72.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH--HHHHHHHHH--------------------
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--VQCLTSASS--------------------   73 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~--~~~~~~~~~--------------------   73 (761)
                      ...+.+|++.|++||||||+|+.|++.++  +..++.|.+..++.. +.  ......+.+                    
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~   89 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG--FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWV   89 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC--CCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcE
Confidence            45678999999999999999999999987  567888888765432 11  111111110                    


Q ss_pred             HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           74 ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        74 ~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .+..+..+|++++......   ++++ .+ +..+..||+++|.+++.+|..+|..+
T Consensus        90 ~l~~~~vVIvEG~~al~~~---~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~  141 (172)
T PRK06547         90 SVEPGRRLIIEGVGSLTAA---NVALASL-LGEVLTVWLDGPEALRKERALARDPD  141 (172)
T ss_pred             EeCCCCeEEEEehhhccHH---HHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch
Confidence            0112345889997554333   3333 33 33467999999999999999999864

>PRK13946 shikimate kinase; Provisional

Probab=98.84  E-value=2.5e-08  Score=100.33  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c-----------HH-HH-HHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T-----------KV-QC-LTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~-----------~~-~~-~~~~~~~L~~g~~VIID   84 (761)
                      .+..|+|+|+|||||||+++.|++.++  +.+++.|.+.....+ +           +. .. .+.+...+..+..||..
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg--~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~   86 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLG--LPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT   86 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC--CCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            345799999999999999999999999  556888875321111 0           00 11 13334444455556665


Q ss_pred             C--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        85 ~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                      +  +.+....|..+   +..++   .|||++|.+++.+|+.+|..++- +....+.+.+.++++.+.
T Consensus        87 ggg~~~~~~~r~~l---~~~~~---~v~L~a~~e~~~~Rl~~r~~rp~-~~~~~~~~~i~~~~~~R~  146 (184)
T PRK13946         87 GGGAFMNEETRAAI---AEKGI---SVWLKADLDVLWERVSRRDTRPL-LRTADPKETLARLMEERY  146 (184)
T ss_pred             CCCCcCCHHHHHHH---HcCCE---EEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHH
Confidence            4  45666666655   33343   69999999999999998876431 122345677788777765

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.84  E-value=2.7e-08  Score=102.96  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=88.9

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC-------------CCCC----cH----HHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK-------------GKSG----TK----VQCLTSA   71 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~-------------~~~~----~~----~~~~~~~   71 (761)
                      ....+.+|+|+|+||.|||++|++|..-+.   ....+++..+++.             ....    .+    ..+++.+
T Consensus         8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl   87 (222)
T PF01591_consen    8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL   87 (222)
T ss_dssp             -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence            455678999999999999999999986643   5566666555431             0000    01    1234566


Q ss_pred             HHHHH--CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc-CCCCCCChHHHHHHHHhh
Q 004319           72 SSALK--KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE-GNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        72 ~~~L~--~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~-~~~~~~v~~~vI~r~~~~  147 (761)
                      ...|.  .|..-|+|+||.+++.|+.+.+. +..++.+.+|..-|..+.+++++..+.... ....+..+++++..+.++
T Consensus        88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence            66676  45567999999999999999999 778887777777788888888888776532 223345677788777665


Q ss_pred             h-------cCCC--ccCCceEEEEcC
Q 004319          148 K-------ELPK--LSEGFSRITLCQ  164 (761)
Q Consensus       148 ~-------e~P~--~~EgFd~V~vv~  164 (761)
                      .       |+-+  ..+....|-+++
T Consensus       168 I~~Ye~~YEpl~~e~d~~lsyIKiin  193 (222)
T PF01591_consen  168 IEHYEKVYEPLDEEEDEDLSYIKIIN  193 (222)
T ss_dssp             HHHHHTT-----TTTTTTSEEEEEET
T ss_pred             HHhhcccccccccccccCceEEEEEc
Confidence            3       3322  245555555554

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>KOG3969 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.9e-08  Score=103.97  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=98.1

Q ss_pred             hhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHH
Q 004319          559 SWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGM  630 (761)
Q Consensus       559 ~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~  630 (761)
                      -|-.+++.--..-    ..+||+|.+    ||++.|..    -....|+|+|-.++.|.+++||+.+|+++|..|...++
T Consensus       147 ~WV~NiL~~~aE~----driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~  222 (310)
T KOG3969|consen  147 NWVYNILEKKAED----DRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSR  222 (310)
T ss_pred             HHHHHHHhccccc----cceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHH
Confidence            4877766433333    348888754    79999976    34467999999888999999999999999999999999


Q ss_pred             HHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhc
Q 004319          631 KWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNH  699 (761)
Q Consensus       631 ~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~  699 (761)
                      .++...+.-+ ...+++-||..||.+|||+|++.-.+.        |=..-.++-=+.++|||+.|+-.
T Consensus       223 ~~i~~~y~v~-~dqlrmf~HYqPSyYHlHVHi~nik~~--------~~~~~~~~rAilLddVI~nL~~~  282 (310)
T KOG3969|consen  223 EAIPQRYGVD-PDQLRMFFHYQPSYYHLHVHIVNIKHD--------HAPGSGCGRAILLDDVIENLELD  282 (310)
T ss_pred             HHHHHHhCCC-chhEEEEEEecCceEEEEEEEEeccCC--------CCCCccccceeeHHHHHHHhccC
Confidence            9877654333 246899999999999999999987665        11112234557799999999764

>PLN02643 ADP-glucose phosphorylase

Probab=98.83  E-value=1.1e-08  Score=112.22  Aligned_cols=108  Identities=15%  Similarity=0.262  Sum_probs=80.8

Q ss_pred             EEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC----
Q 004319          578 LLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP----  653 (761)
Q Consensus       578 vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p----  653 (761)
                      +||++|.+++|.|.+|..++|+||||| +|+.++.+|+++++..|..+++.....+.+.+...   .+++++|.+|    
T Consensus       211 iV~en~~f~Af~p~ap~~P~evlIiPK-rH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~---pyN~~~~~~P~~~~  286 (336)
T PLN02643        211 LIDESSHFVSIAPFAATFPFEIWIIPR-DHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP---PYNYMIQTSPLGVE  286 (336)
T ss_pred             EEEeCCCEEEEeccccCCCCEEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC---CceeeeecCCCccc
Confidence            899999999999999999999999999 89999999999998888887776555554443332   3788888887    


Q ss_pred             ----cccceeeeeecCCccccccccccccccc--Cccccc---CHHHHHHHHHh
Q 004319          654 ----SMRQLHLHVISQDFNSKHLKNKKHWNSF--NTAFFC---DSVDVLEEISN  698 (761)
Q Consensus       654 ----Sv~HLHlHVIs~d~~s~~lk~kkH~nsF--~t~fFv---~~~~v~~~l~~  698 (761)
                          ...|+|+|++.+      ++.   .-.|  .|++|+   +-++..+.|+.
T Consensus       287 ~~~~~~~H~hihi~PR------l~~---~aGfElg~g~~in~~~PE~aA~~LR~  331 (336)
T PLN02643        287 ESNLPYTHWFLQIVPQ------LSG---VGGFELGTGCYINPVFPEDAAKVLRE  331 (336)
T ss_pred             cCcccceEEEEEEecC------cCC---ccceeccCCCeeCCCCHHHHHHHHHh
Confidence                236666799985      222   1233  467665   35566666643

>PRK13948 shikimate kinase; Provisional

Probab=98.82  E-value=4.5e-08  Score=98.56  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHH-HHHHHHHHCCCcEE
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVF   82 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~-~~~~~~L~~g~~VI   82 (761)
                      ...+..|+|+|++||||||+++.|++.++  +.+++.|.+.+...+             .+.++. +.+.+.+..+..||
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg--~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VI   84 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALM--LHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVI   84 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            34678999999999999999999999999  555888876432211             111122 23333344444444


Q ss_pred             Ee--CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319           83 LD--RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (761)
Q Consensus        83 ID--~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V  160 (761)
                      .-  ++......|..+   ++.+.   +|||++|.+++.+|+..+ .+ +.+....+.+.+.+++.+.+ |.+ +..+.+
T Consensus        85 a~GgG~v~~~~n~~~l---~~~g~---vV~L~~~~e~l~~Rl~~~-~R-Pll~~~~~~~~l~~l~~~R~-~~Y-~~a~~~  154 (182)
T PRK13948         85 SLGGGTFMHEENRRKL---LSRGP---VVVLWASPETIYERTRPG-DR-PLLQVEDPLGRIRTLLNERE-PVY-RQATIH  154 (182)
T ss_pred             ECCCcEEcCHHHHHHH---HcCCe---EEEEECCHHHHHHHhcCC-CC-CCCCCCChHHHHHHHHHHHH-HHH-HhCCEE
Confidence            42  466777777766   33444   789999999999999432 22 22222234445566555543 222 224544


Q ss_pred             EEcC
Q 004319          161 TLCQ  164 (761)
Q Consensus       161 ~vv~  164 (761)
                      +..+
T Consensus       155 i~t~  158 (182)
T PRK13948        155 VSTD  158 (182)
T ss_pred             EECC
Confidence            4443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.81  E-value=4e-08  Score=99.95  Aligned_cols=106  Identities=21%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             hcccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC---C----CcHHH----HHHHHHHHHHCCC
Q 004319           14 EEKKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK---S----GTKVQ----CLTSASSALKKGK   79 (761)
Q Consensus        14 ~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~---~----~~~~~----~~~~~~~~L~~g~   79 (761)
                      ....+++.+|+|+|++||||||+++.|...+   +....+++.|.++...   .    .....    +...+...+..|.
T Consensus        18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~   97 (198)
T PRK03846         18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGL   97 (198)
T ss_pred             HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCC
Confidence            3456788999999999999999999998875   2346778888875321   1    11111    2234555667888


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHH
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR  121 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R  121 (761)
                      .||.+..+....+|..++++ ...+  +.+|||++|.+++.+|
T Consensus        98 ~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         98 VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTPLAICEAR  138 (198)
T ss_pred             EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCCHHHHHhc
Confidence            88888777788999999988 5543  5579999999999999

>PRK01184 hypothetical protein; Provisional

Probab=98.80  E-value=4.2e-08  Score=98.23  Aligned_cols=101  Identities=22%  Similarity=0.343  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC-----CCC------Cc-----HHH-----HHHHHHHHHHC-
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK-----GKS------GT-----KVQ-----CLTSASSALKK-   77 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~-----~~~------~~-----~~~-----~~~~~~~~L~~-   77 (761)
                      .+|+|+|+|||||||+++ +++.++  +.+++. |.+++     +..      +.     ...     ....+...+.. 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~   78 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK   78 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence            489999999999999987 788888  666775 55532     111      00     000     11222233333 


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 -GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 -g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       +..||+|+. ....++..+.+.  .+..+.+|++++|.+++.+|+..|..
T Consensus        79 ~~~~vvidg~-r~~~e~~~~~~~--~~~~~~~i~v~~~~~~~~~Rl~~R~~  126 (184)
T PRK01184         79 GDEVVVIDGV-RGDAEVEYFRKE--FPEDFILIAIHAPPEVRFERLKKRGR  126 (184)
T ss_pred             CCCcEEEeCC-CCHHHHHHHHHh--CCcccEEEEEECCHHHHHHHHHHcCC
Confidence             577999996 566676666555  22345689999999999999999864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.80  E-value=2.5e-08  Score=99.23  Aligned_cols=104  Identities=15%  Similarity=0.080  Sum_probs=69.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC-----CCCcHHH----HHHHHHH-HHHCCCcEEEe
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG-----KSGTKVQ----CLTSASS-ALKKGKSVFLD   84 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~-----~~~~~~~----~~~~~~~-~L~~g~~VIID   84 (761)
                      .++.+|+++|+|||||||+|+.+...+.   ..+.+++.|.+++.     .......    ....+.+ ....|..||+|
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~   84 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVT   84 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4567999999999999999999998775   33667888887531     1111111    1122223 23578889999


Q ss_pred             CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      +++.....+......   .....+|||++|.+++.+|+..
T Consensus        85 ~~~~~~~~~~~~~~~---~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         85 TISMFDEIYAYNRKH---LPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             eCCcHHHHHHHHHhh---cCCeEEEEEeCCHHHHHHhchh
Confidence            988755444444433   1123589999999999999754

>PLN02842 nucleotide kinase

Probab=98.80  E-value=7.4e-08  Score=109.93  Aligned_cols=99  Identities=26%  Similarity=0.379  Sum_probs=70.9

Q ss_pred             EEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC----CCc
Q 004319           24 IMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK----GKS   80 (761)
Q Consensus        24 vLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~----g~~   80 (761)
                      +|.|+|||||||+|+.|++.++  +.+++.+++ +                  +|...+...+...+..++..    .+.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg--~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G   78 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFG--LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKG   78 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCc
Confidence            5899999999999999999998  667775443 2                  23333444445555555532    345


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +|||+...+..+...+... -..   -.+|+|++|.+++.+|+..|..
T Consensus        79 ~ILDGfPRt~~Qa~~Le~~~~~P---DlVI~LDvpdevlleRl~gR~~  123 (505)
T PLN02842         79 WLLDGYPRSFAQAQSLEKLKIRP---DIFILLDVPDEILIDRCVGRRL  123 (505)
T ss_pred             EEEeCCCCcHHHHHHHHhcCCCC---CEEEEEeCCHHHHHHHHhcccc
Confidence            9999988887776555433 222   2489999999999999998864

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.79  E-value=5.4e-09  Score=103.44  Aligned_cols=132  Identities=20%  Similarity=0.365  Sum_probs=99.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEeccccc-CCC----------CCcHHHHHHHHHHHHH---------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTIN-KGK----------SGTKVQCLTSASSALK---------   76 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~-~~~----------~~~~~~~~~~~~~~L~---------   76 (761)
                      .|+.|+|+|+||||||++.+.....    +...++|-|++. +.-          .+..+..++-+..+..         
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv   81 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV   81 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence            4789999999999999999864432    234566777774 111          1111111233333333         


Q ss_pred             ----------CCC-cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319           77 ----------KGK-SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (761)
Q Consensus        77 ----------~g~-~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~  144 (761)
                                .|+ .+++|..++.+.+|..+.++ +.+|+.+-.||+....+.|++|+..|.+-.     ..+-++|++|
T Consensus        82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rsda~-----k~~~dtiRki  156 (291)
T KOG4622|consen   82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRSDAE-----KQKNDTIRKI  156 (291)
T ss_pred             eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccccch-----hCccHHHHHH
Confidence                      122 36788889999999999999 999999999999999999999999998753     5788999999


Q ss_pred             HhhhcCCCccCCc
Q 004319          145 LQKKELPKLSEGF  157 (761)
Q Consensus       145 ~~~~e~P~~~EgF  157 (761)
                      +.++|.|...|.+
T Consensus       157 ~EklE~PD~~ea~  169 (291)
T KOG4622|consen  157 FEKLEDPDEIEAL  169 (291)
T ss_pred             HHhccCccHHHHH
Confidence            9999999987776

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.79  E-value=3.4e-08  Score=97.08  Aligned_cols=123  Identities=17%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHH-HHHHHHHHCCCcEEE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCL-TSASSALKKGKSVFL   83 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~-~~~~~~L~~g~~VII   83 (761)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+             ...+.. ..+.+.+.....||.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~   79 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG--YDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIS   79 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            4567899999999999999999999998  556788776422211             011111 222333333333443


Q ss_pred             eCC--CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           84 DRC--NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        84 D~t--n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                      .+.  .+....|..+   +..+   ..|+|++|.+.+.+|+.+|..++- .......+.+..++....
T Consensus        80 ~g~~~~~~~~~r~~l---~~~~---~~v~l~~~~~~~~~R~~~~~~r~~-~~~~~~~~~~~~~~~~~~  140 (175)
T PRK00131         80 TGGGAVLREENRALL---RERG---TVVYLDASFEELLRRLRRDRNRPL-LQTNDPKEKLRDLYEERD  140 (175)
T ss_pred             eCCCEeecHHHHHHH---HhCC---EEEEEECCHHHHHHHhcCCCCCCc-CCCCChHHHHHHHHHHHH
Confidence            332  2233333332   3333   478999999999999988765221 111233445555555543

>PRK00625 shikimate kinase; Provisional

Probab=98.78  E-value=3.6e-08  Score=98.51  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CC--CCcHHH------------HHHHHHHHHHCCCcEEEe
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GK--SGTKVQ------------CLTSASSALKKGKSVFLD   84 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~--~~~~~~------------~~~~~~~~L~~g~~VIID   84 (761)
                      .|+|+|+|||||||+++.|++.++  +.+++.|.+-.   +.  ..+..+            ....+.+.+.....||..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~--~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~   79 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS--LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVAL   79 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEEC
Confidence            489999999999999999999998  66688887632   11  011111            112333444444445544


Q ss_pred             C--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           85 R--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        85 ~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +  +....+.+..   ++..+.   +|||++|.+++.+|+.+|..
T Consensus        80 GGg~~~~~e~~~~---l~~~~~---Vv~L~~~~e~l~~Rl~~R~~  118 (173)
T PRK00625         80 GGGTLMIEPSYAH---IRNRGL---LVLLSLPIATIYQRLQKRGL  118 (173)
T ss_pred             CCCccCCHHHHHH---HhcCCE---EEEEECCHHHHHHHHhcCCC
Confidence            4  3333333332   233444   89999999999999998865

>PRK13949 shikimate kinase; Provisional

Probab=98.77  E-value=6.6e-08  Score=96.16  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c------------HHHHHHHHHHHHHCCCcEEE-eCCC-
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFL-DRCN-   87 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~------------~~~~~~~~~~~L~~g~~VII-D~tn-   87 (761)
                      |+|+|+|||||||+++.|++.++  +.+++.|.+.....+ +            ..+....+...+.....+|| ++.. 
T Consensus         4 I~liG~~GsGKstl~~~La~~l~--~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~   81 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELG--LSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGA   81 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC--CCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence            89999999999999999999999  556888766321111 0            01112222232443345555 5422 


Q ss_pred             -CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        88 -~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                       .....+..+   ++.+.   +|||++|.+++.+|+..+
T Consensus        82 ~~~~~~~~~l---~~~~~---vi~L~~~~~~~~~Ri~~~  114 (169)
T PRK13949         82 PCFFDNMELM---NASGT---TVYLKVSPEVLFVRLRLA  114 (169)
T ss_pred             cCCHHHHHHH---HhCCe---EEEEECCHHHHHHHHhcC
Confidence             233444433   34454   789999999999999754

>PRK13947 shikimate kinase; Provisional

Probab=98.77  E-value=4.6e-08  Score=96.52  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc-------------HHHHHHHHHHHHHCCCcEEEeCC---
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------KVQCLTSASSALKKGKSVFLDRC---   86 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~-------------~~~~~~~~~~~L~~g~~VIID~t---   86 (761)
                      |+|+|+|||||||+|+.|++.++  +.+++.|.+.+...+.             .......+.+.+.....+||...   
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~   81 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLS--FGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV   81 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC--CCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence            89999999999999999999999  6668888774332211             11122334444554445555432   


Q ss_pred             CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .+....+..+   ++.+.   +|||++|.+++.+|+..|..+
T Consensus        82 vl~~~~~~~l---~~~~~---vv~L~~~~~~l~~Rl~~r~~r  117 (171)
T PRK13947         82 VLNPENVVQL---RKNGV---VICLKARPEVILRRVGKKKSR  117 (171)
T ss_pred             cCCHHHHHHH---HhCCE---EEEEECCHHHHHHHhcCCCCC
Confidence            2444443332   44443   899999999999999887553

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.77  E-value=6.3e-08  Score=96.27  Aligned_cols=102  Identities=20%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCC-------CcHHHH----HHHHHHHHHCCCcEEE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKS-------GTKVQC----LTSASSALKKGKSVFL   83 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~-------~~~~~~----~~~~~~~L~~g~~VII   83 (761)
                      ....+|+|+|+|||||||+|+.|+..+.   ..+.+++.|.++....       ..+...    ...+...+..|..||+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3457999999999999999999988763   3467788887753211       111111    1222333466888999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |+++.....|..+....   ..+.+|+|++|.+++.+|+
T Consensus        82 ~~~~~~~~~~~~l~~~~---~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         82 SAISPYRETREEVRANI---GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             ecCCCCHHHHHHHHhhc---CCeEEEEEcCCHHHHHHhC
Confidence            99887777777665551   2467899999999999995

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.75  E-value=7.9e-08  Score=95.99  Aligned_cols=108  Identities=20%  Similarity=0.309  Sum_probs=75.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----------CCC--------Cc-----HHHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----------GKS--------GT-----KVQCLTSASSALK   76 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----------~~~--------~~-----~~~~~~~~~~~L~   76 (761)
                      .||+|-|+|.|||||+|+.|...+..+|.++..|.+.+           +..        +.     .......+.....
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~   81 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR   81 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999988842           100        01     1112356677778


Q ss_pred             CCCcEEEeCCCCCHHH-HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           77 KGKSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        77 ~g~~VIID~tn~~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                      .|.+||+|.......+ ...|.++ -.++.+.+|-+.||.+++.+|...|.++.
T Consensus        82 aG~~VIvD~v~~~~~~l~d~l~~~-L~~~~vl~VgV~Cpleil~~RE~~RgDR~  134 (174)
T PF07931_consen   82 AGNNVIVDDVFLGPRWLQDCLRRL-LAGLPVLFVGVRCPLEILERRERARGDRP  134 (174)
T ss_dssp             TT-EEEEEE--TTTHHHHHHHHHH-HTTS-EEEEEEE--HHHHHHHHHHHTSSS
T ss_pred             CCCCEEEecCccCcHHHHHHHHHH-hCCCceEEEEEECCHHHHHHHHHhcCCcc
Confidence            9999999997777765 4555454 13567788889999999999999999854

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.74  E-value=9.3e-08  Score=111.89  Aligned_cols=105  Identities=21%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEecccccCCCCC----c---HHH----HHHHHHHHHHCCCcE
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSV   81 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~D~i~~~~~~----~---~~~----~~~~~~~~L~~g~~V   81 (761)
                      ...+.+|+|+|+|||||||+|+.|++.++.    .+.+++.|.++.+..+    +   +..    +...+...++.|..+
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~v  468 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIA  468 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            345679999999999999999999998873    3577899988653321    1   111    113445567889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |+|.++.....|..++++ +..+ .+.+|+|++|.++|.+|+
T Consensus       469 I~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~  509 (568)
T PRK05537        469 ICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD  509 (568)
T ss_pred             EEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence            999999999999999999 6655 366899999999999996

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.73  E-value=1.5e-07  Score=112.13  Aligned_cols=104  Identities=27%  Similarity=0.306  Sum_probs=80.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC----c---HHH----HHHHHHHHHHCCCcEE
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----T---KVQ----CLTSASSALKKGKSVF   82 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~----~---~~~----~~~~~~~~L~~g~~VI   82 (761)
                      ..+|.+|+|+|+|||||||+|+.|++.+.   ..+.+++.|.++.....    +   +..    +...+...+..|..||
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi  536 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVL  536 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            34689999999999999999999998863   45788999999753321    1   111    2244455668899999


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      +|+++..+.+|..++++ ...  .+.+|||++|.++|.+|.
T Consensus       537 vda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        537 VSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             EECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence            99999999999988877 443  567899999999999994

>PRK03839 putative kinase; Provisional

Probab=98.72  E-value=4.5e-08  Score=97.79  Aligned_cols=91  Identities=21%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-CC----cH-----HHHHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG----TK-----VQCLTSASSALKKGKSVFLDRCNLERE   91 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-~~----~~-----~~~~~~~~~~L~~g~~VIID~tn~~~~   91 (761)
                      .|+|+|+|||||||+|++|++.++  +.+++.|.+.... ..    ..     ..+...+.+. ..+..||+|+...   
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~--~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vIidG~~~---   75 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG--YEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE-FKEKNVVLDGHLS---   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-ccCCCEEEEeccc---
Confidence            589999999999999999999999  6668877663111 11    11     1111222222 2356799999421   


Q ss_pred             HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                         .   +...+.   +|+|+++.+++.+|+..|..
T Consensus        76 ---~---l~~~~~---vi~L~~~~~~~~~Rl~~R~~  102 (180)
T PRK03839         76 ---H---LLPVDY---VIVLRAHPKIIKERLKERGY  102 (180)
T ss_pred             ---c---ccCCCE---EEEEECCHHHHHHHHHHcCC
Confidence               1   122333   78999999999999998863

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.71  E-value=1.2e-07  Score=91.62  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=63.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c------------HHHHHHHHHHHHHCCCcEEEeCCC--
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T------------KVQCLTSASSALKKGKSVFLDRCN--   87 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~------------~~~~~~~~~~~L~~g~~VIID~tn--   87 (761)
                      |+|+|+|||||||+|+.|++.++  +..++.|.+.....+ .            .......+...+.....+||+...  
T Consensus         2 i~l~G~~GsGKstla~~la~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG--LPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            78999999999999999999998  666888877422111 0            011112233344444556666432  


Q ss_pred             -CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           88 -LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        88 -~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                       .....|..+   ...+   .+|||++|.+++.+|+.+|..+
T Consensus        80 i~~~~~~~~~---~~~~---~~i~l~~~~e~~~~R~~~r~~r  115 (154)
T cd00464          80 VLREENRRLL---LENG---IVVWLDASPEELLERLARDKTR  115 (154)
T ss_pred             cCcHHHHHHH---HcCC---eEEEEeCCHHHHHHHhccCCCC
Confidence             333332222   3333   4899999999999999998743

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>smart00072 GuKc Guanylate kinase homologues

Probab=98.71  E-value=6.7e-08  Score=97.19  Aligned_cols=137  Identities=13%  Similarity=0.180  Sum_probs=79.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE---------------------ecccc----cCCCCCcHHH--------
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARI---------------------CQDTI----NKGKSGTKVQ--------   66 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I---------------------~~D~i----~~~~~~~~~~--------   66 (761)
                      ..+|+|+||+||||+|+++.|.+.++..+..+                     +.+.+    .++.+..+..        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            35899999999999999999998863112111                     11111    1111111000        


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      ....+...+..|+.+|+|..      ...+..++.......+||+. .+.+++.+|+.+|..       ..++.+-.|+.
T Consensus        82 ~~~~i~~~~~~~~~~ild~~------~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~-------~~~~~i~~rl~  148 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDID------PQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT-------ETAERIQKRLA  148 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEEC------HHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence            11356777888999999983      33333331223345688887 556789999998875       23344444444


Q ss_pred             hhhcCCCccCCceEEEEcCChhhH
Q 004319          146 QKKELPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~~ei  169 (761)
                      ...........|+.+++.++.++.
T Consensus       149 ~a~~~~~~~~~fd~~I~n~~l~~~  172 (184)
T smart00072      149 AAQKEAQEYHLFDYVIVNDDLEDA  172 (184)
T ss_pred             HHHHHHhhhccCCEEEECcCHHHH
Confidence            332212223458888777654443

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.70  E-value=3.4e-07  Score=93.71  Aligned_cols=119  Identities=25%  Similarity=0.346  Sum_probs=76.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCC-----------------CCcHHHHHHHHHHHHHCC-
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGK-----------------SGTKVQCLTSASSALKKG-   78 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~-----------------~~~~~~~~~~~~~~L~~g-   78 (761)
                      .++.+|.|+|++|||||||++.|.+.++ ..+..+++|.+....                 ...+..+.+.+. .+..| 
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~l~~~~   82 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLK-ALKAGK   82 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHH-HHHcCC
Confidence            4678999999999999999999999884 346678888763211                 001222222222 22222 


Q ss_pred             ------------------------CcEEEeCCCCCH-HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319           79 ------------------------KSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (761)
Q Consensus        79 ------------------------~~VIID~tn~~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~  133 (761)
                                              ..+|+|+..+.. .....+.++        .|++++|.+++++|..+|..+.++  
T Consensus        83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~--------~I~v~~~~~~~~~R~~~Rd~~~rg--  152 (209)
T PRK05480         83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDI--------KIFVDTPLDIRLIRRLKRDVNERG--  152 (209)
T ss_pred             ccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhce--------eEEEeCChhHHHHHHHhhcchhcC--
Confidence                                    237788865543 232333333        889999999999999999854322  


Q ss_pred             CCChHHHHHHHHhhh
Q 004319          134 GGKAAAVVNRMLQKK  148 (761)
Q Consensus       134 ~~v~~~vI~r~~~~~  148 (761)
                       ..+++++.++.++.
T Consensus       153 -~~~e~~~~~~~~~~  166 (209)
T PRK05480        153 -RSLESVINQYLSTV  166 (209)
T ss_pred             -CCHHHHHHHHHHhh
Confidence             45666776665543

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.70  E-value=2e-07  Score=92.91  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---cH----------HHHHHHHHHHHHCCCcEEEeC-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---TK----------VQCLTSASSALKKGKSVFLDR-   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---~~----------~~~~~~~~~~L~~g~~VIID~-   85 (761)
                      ...|+|+|++||||||+++.|+..++  +.+++.|.......+   .+          ......+...+.....+|+.. 
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~--~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g   81 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG   81 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC--CcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            34699999999999999999999988  556887764321111   00          111123333344445566654 


Q ss_pred             --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEE
Q 004319           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRI  160 (761)
Q Consensus        86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V  160 (761)
                        .......|..+   +..+.   +|||++|.++|.+|+..+..++- ..+..+.+.+..++... .|.+.+-.+.+
T Consensus        82 gg~v~~~~~~~~l---~~~~~---vv~L~~~~e~~~~Ri~~~~~rP~-~~~~~~~~~~~~l~~~R-~~~Y~~~Ad~~  150 (172)
T PRK05057         82 GGSVKSRETRNRL---SARGV---VVYLETTIEKQLARTQRDKKRPL-LQVDDPREVLEALANER-NPLYEEIADVT  150 (172)
T ss_pred             CchhCCHHHHHHH---HhCCE---EEEEeCCHHHHHHHHhCCCCCCC-CCCCCHHHHHHHHHHHH-HHHHHhhCCEE
Confidence              23344554433   34454   89999999999999986654432 22223345566655554 34433323433

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.69  E-value=4.7e-07  Score=90.21  Aligned_cols=101  Identities=16%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEEec----c--------------cc----cCCCCCcHH-------HHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARP--WARICQ----D--------------TI----NKGKSGTKV-------QCLT   69 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~~I~~----D--------------~i----~~~~~~~~~-------~~~~   69 (761)
                      .+++|+|+|||||||+++.|+..++..  ..++..    +              .+    .++.+....       ....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            378999999999999999998876521  222111    1              00    011110000       0012


Q ss_pred             HHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        70 ~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+...+..|..||+|+.   ...+..+.+.   .....+|+|++|.+++.+|+..|..
T Consensus        82 ~i~~~~~~g~~vv~~g~---~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~R~~  133 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGS---RAVLPEARQR---YPNLLVVNITASPDVLAQRLAARGR  133 (179)
T ss_pred             HHHHHHhcCCEEEEECC---HHHHHHHHHH---CCCcEEEEEECCHHHHHHHHHHcCC
Confidence            33456678889999984   2233333222   1245688999999999999999864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06696 uridine kinase; Validated

Probab=98.69  E-value=1.5e-07  Score=97.68  Aligned_cols=103  Identities=20%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC-----------------CcHHHHHHHHHHHH-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----------------GTKVQCLTSASSAL-   75 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L-   75 (761)
                      .+.|.+|.|.|+|||||||||++|++.+   +..+.+++.|++...+.                 ..+..+.+.+...+ 
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            4578999999999999999999999988   45567778888742210                 01111111111111 


Q ss_pred             ---------------------------HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           76 ---------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        76 ---------------------------~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                                                 ..+..||+|+..+.......+.+        ..||+++|.+++.+|+..|..
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d--------~~i~v~~~~e~~~~R~~~Rd~  169 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWD--------YKIFLDTDFEVSRRRGAKRDT  169 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCC--------EEEEEECCHHHHHHHHHHhhh
Confidence                                       12335778886665443333322        389999999999999999974

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.69  E-value=3.6e-08  Score=95.38  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=105.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC--CcH-------HHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--GTK-------VQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~--~~~-------~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      +|.+.++.|+.||||||+...+...+...+.+++.|.+..+..  .+.       +.....+...++.+..++.+.|...
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~   80 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG   80 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence            4789999999999999998876666555678899999953211  111       2233555667789999999998777


Q ss_pred             HHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEEEcCCh
Q 004319           90 REQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNE  166 (761)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~vv~~~  166 (761)
                      ...++....-+..|+-++..|+-++ .|+..+|+..|-...|+   ++|+++|++.|.+. + .+..-+-.|+.++.++.
T Consensus        81 ~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH---~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS  157 (187)
T COG4185          81 PSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGH---DIPEDKIRRRYRRSLELLAQALTLADRATIYDNS  157 (187)
T ss_pred             chHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCC
Confidence            7666544333888998888777765 58999999999887776   89999999988763 2 23334445667777664


Q ss_pred             h
Q 004319          167 N  167 (761)
Q Consensus       167 ~  167 (761)
                      .
T Consensus       158 ~  158 (187)
T COG4185         158 R  158 (187)
T ss_pred             C
Confidence            3

>PRK08356 hypothetical protein; Provisional

Probab=98.68  E-value=5.3e-07  Score=91.51  Aligned_cols=100  Identities=14%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----cC--------------C-----CCCcH----------H
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NK--------------G-----KSGTK----------V   65 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~~--------------~-----~~~~~----------~   65 (761)
                      ..+|+|+|+|||||||+|+.|. .++  +.+|+..+.     +.              +     ....+          .
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g--~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~   81 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKG--FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCC--CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence            3579999999999999999995 566  556665432     11              0     00000          0


Q ss_pred             HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           66 QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        66 ~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ...+.+.+.+.....+|||+. .+..++..+...  .+   .+|++++|.+++.+|+.+|...
T Consensus        82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~--~~---~vi~l~~~~~~~~~Rl~~R~~~  138 (195)
T PRK08356         82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM--GG---KVIYVEAKPEIRFERLRRRGAE  138 (195)
T ss_pred             HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhc--CC---EEEEEECCHHHHHHHHHhcCCc
Confidence            011234444444457999996 777777766433  12   4789999999999999999763

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=98.66  E-value=6.6e-09  Score=103.55  Aligned_cols=128  Identities=12%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCC---CCCCCCCCcccCCCCCCCccccccccccccccccccccccccccc-CCCCc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDA---PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVK-GTENP  262 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  262 (761)
                      .|+-+- ..+...++.|++.++..--   +.....|...       -|++++++=.++.|.+.+.|..++++.+ .+..-
T Consensus        31 gGGVd~-AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Av-------it~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a  102 (179)
T COG2110          31 GGGVAG-AIHRAAGPQLEEECAEIAPKRGGGRIPVGEAV-------ITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAA  102 (179)
T ss_pred             CCcHHH-HHHHHhhHHHHHHHHHHhhhhcCCCCCceEEE-------EccCcCCCCCEEEecCCCcccCCChhHHHHHHHH
Confidence            355554 5677778889988888753   2111113332       5778899999999999998876542221 12333


Q ss_pred             cccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEecccc
Q 004319          263 EVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNK--LGNARLVLVDLTQ  323 (761)
Q Consensus       263 ~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~--~~~i~~v~vD~~~  323 (761)
                      .+.++. ...+.+++||||||||||+||||+++++++++.+|++|+..  ...+.++..+.+.
T Consensus       103 ~~~~l~-~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v~~~~e~  164 (179)
T COG2110         103 YRAALR-LAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFVVYGEET  164 (179)
T ss_pred             HHHHHH-HHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEEecCchh
Confidence            445555 66677899999999999999999999999999999999975  2224444444433

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.64  E-value=3.4e-07  Score=93.42  Aligned_cols=104  Identities=20%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------C--C----------CC--cHH-----------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G--K----------SG--TKV-----------   65 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~--~----------~~--~~~-----------   65 (761)
                      .+.+|+++|+|||||||+|+.|+..++.. .++..|.+++        +  .          ..  ...           
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~   80 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR   80 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence            46799999999999999999999998842 3466666532        1  0          00  000           


Q ss_pred             ----HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeC-CHHHHHHHHHhcccc
Q 004319           66 ----QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRIEH  128 (761)
Q Consensus        66 ----~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~R~~~R~~~  128 (761)
                          .+...+...+..|.++|+|++++....+...   ...+.  .++++.+ +.++..+|+..|...
T Consensus        81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~---~~~~v--~~i~l~v~d~e~lr~Rl~~R~~~  143 (197)
T PRK12339         81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN---RTNNI--RAFYLYIRDAELHRSRLADRINY  143 (197)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH---HhcCe--EEEEEEeCCHHHHHHHHHHHhhc
Confidence                0224567788999999999999998877533   22222  3444443 678888999999864

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.63  E-value=7.4e-07  Score=88.67  Aligned_cols=133  Identities=17%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE--------------------ecccc----cCCCCCc--------HHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARI--------------------CQDTI----NKGKSGT--------KVQCL   68 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I--------------------~~D~i----~~~~~~~--------~~~~~   68 (761)
                      .+|+|+|++||||||+++.|+..++..+..+                    +.+.+    ..+....        .....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            4799999999999999999998654211111                    11111    0011000        00013


Q ss_pred             HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      ..+...+..|+.+|+|..      ...+..+ ......+.++++..+.+.+.+|+.+|...       ..+.+..++.+.
T Consensus        82 ~~i~~~~~~g~~vi~d~~------~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~-------~~~~i~~rl~~~  148 (180)
T TIGR03263        82 SPVEEALAAGKDVLLEID------VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD-------SEEVIERRLAKA  148 (180)
T ss_pred             HHHHHHHHCCCeEEEECC------HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence            557788899999999973      2222233 33333344555577789999999988652       223333333332


Q ss_pred             hcCCCccCCceEEEEcCCh
Q 004319          148 KELPKLSEGFSRITLCQNE  166 (761)
Q Consensus       148 ~e~P~~~EgFd~V~vv~~~  166 (761)
                      .+.-...+.||.++..++.
T Consensus       149 ~~~~~~~~~~d~~i~n~~~  167 (180)
T TIGR03263       149 KKEIAHADEFDYVIVNDDL  167 (180)
T ss_pred             HHHHhccccCcEEEECCCH
Confidence            2211123447888766543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.62  E-value=2.2e-07  Score=95.33  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=76.5

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC-C-------------------CeEEEecccc----cCCCCCcHHH-----
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-R-------------------PWARICQDTI----NKGKSGTKVQ-----   66 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~-------------------~~~~I~~D~i----~~~~~~~~~~-----   66 (761)
                      ..+.+.+|+|+|+|||||||+++.|.+... .                   .+..++.+.+    ..+.+..+.+     
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            456788999999999999999999975421 0                   0111111111    0111111100     


Q ss_pred             ---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        67 ---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                         -...+...+..|+.+|+|...   ..+..+.+.   ...+.+|++ .++.+++.+|+.+|..+       ..++...
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~---~pd~~~if~~pps~e~l~~Rl~~R~~~-------~~~~~~~  155 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKVDV---QGAASIKRL---VPEAVFIFLAPPSMDELTRRLELRRTE-------SPEELER  155 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHh---CCCeEEEEEeCCCHHHHHHHHHHcCCC-------CHHHHHH
Confidence               013567788999999998722   233333222   223344444 35578899999998753       2344444


Q ss_pred             HHHhhhcCCCccCCceEEEEcCChhhHHHH
Q 004319          143 RMLQKKELPKLSEGFSRITLCQNENDVQAA  172 (761)
Q Consensus       143 r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~  172 (761)
                      |+...+......+.|+. ++++...+++++
T Consensus       156 Rl~~~~~e~~~~~~~~~-~iId~~~~~e~v  184 (206)
T PRK14738        156 RLATAPLELEQLPEFDY-VVVNPEDRLDEA  184 (206)
T ss_pred             HHHHHHHHHhcccCCCE-EEECCCCCHHHH
Confidence            44443322212233544 455543444443

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.61  E-value=9.9e-08  Score=91.15  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC----------CcHHHHHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------GTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~----------~~~~~~~~~~~~~L~~g~~VIID~tn~~~~   91 (761)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|.+.....          ......+......+..+..||+|+......
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~--~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~   78 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG--LPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV   78 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence            589999999999999999999998  55677775532111          111112222233355566899999442110


Q ss_pred             HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           92 QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        92 ~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                            -....   ...|+|++|.+++.+|+.+|..
T Consensus        79 ------~~~~~---~~~i~l~~~~~~r~~R~~~r~~  105 (147)
T cd02020          79 ------VFPDA---DLKIFLTASPEVRAKRRAKQLQ  105 (147)
T ss_pred             ------EcCCC---CEEEEEECCHHHHHHHHHHHHH
Confidence                  01112   2379999999999999999753

>PTZ00301 uridine kinase; Provisional

Probab=98.61  E-value=8.7e-07  Score=91.29  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=76.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~   76 (761)
                      ++.||.|.|+|||||||||++|.+.+    + .....++.|.+.....                 .+++.+.+.+ ..|+
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~   80 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELK   80 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHH
Confidence            35799999999999999999987765    2 1244778888743210                 0122222333 4444


Q ss_pred             CC-------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319           77 KG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (761)
Q Consensus        77 ~g-------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~  131 (761)
                      .|                         +.+|+|+.....  ...+.++  .++   .||+++|.++++.|..+|....++
T Consensus        81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~--~~~l~~l--~D~---~ifvd~~~d~~~~Rr~~Rd~~~rG  153 (210)
T PTZ00301         81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT--NAELRNE--MDC---LIFVDTPLDICLIRRAKRDMRERG  153 (210)
T ss_pred             cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhC--CHHHHHh--CCE---EEEEeCChhHHHHHHHhhhHHhcC
Confidence            43                         136778855521  1222222  222   689999999999999999865443


Q ss_pred             CCCCChHHHHHHHHh-------hhcCCCc
Q 004319          132 LQGGKAAAVVNRMLQ-------KKELPKL  153 (761)
Q Consensus       132 ~~~~v~~~vI~r~~~-------~~e~P~~  153 (761)
                         ..++.++.++..       ++..|..
T Consensus       154 ---~~~e~v~~~~~~~v~~~~~~~I~p~k  179 (210)
T PTZ00301        154 ---RTFESVIEQYEATVRPMYYAYVEPSK  179 (210)
T ss_pred             ---CCHHHHHHHHHHhhcccHHHHcCccc
Confidence               456666665544       3556654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.59  E-value=1.3e-07  Score=87.62  Aligned_cols=94  Identities=27%  Similarity=0.394  Sum_probs=56.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c-CCCC----C--cH-H---HHHHHHHHHHH---CCCcEEEeCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N-KGKS----G--TK-V---QCLTSASSALK---KGKSVFLDRC   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~-~~~~----~--~~-~---~~~~~~~~~L~---~g~~VIID~t   86 (761)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|++ . .++.    .  .. .   .....+...+.   ....+|+|+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~   78 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG--FPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS   78 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT--CEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC--CeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence            689999999999999999999998  777888884 1 1111    1  11 1   12223333332   4566999994


Q ss_pred             CCCHHH--HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           87 NLEREQ--RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        87 n~~~~~--R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .. ...  +..+.        ..+|+++.|.+.+..|..+|.
T Consensus        79 ~~-~~~~~~~~~~--------~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   79 YE-SEMEIRLPEF--------DHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             SC-HCCHSCCHHG--------GCEEEEEEEEHHHHHHHHHHH
T ss_pred             Cc-cchhhhhhcC--------CEEEEEECCCHHHHHHHHHHH
Confidence            33 211  11111        137788877776666665554

...

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.56  E-value=5.4e-07  Score=89.09  Aligned_cols=97  Identities=19%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----------cHH---HHHHHHHHHHHCCCcEEEeCC--
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------TKV---QCLTSASSALKKGKSVFLDRC--   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----------~~~---~~~~~~~~~L~~g~~VIID~t--   86 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+          .+.   .....+.+.+..+. +||...  
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg--~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~-~vi~~ggg   80 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALG--YRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPS-TVIATGGG   80 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCC-eEEECCCC
Confidence            588899999999999999999999  566888877422111          111   11122334454443 455432  


Q ss_pred             -CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        87 -n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       .+....|..+   +..+.   +|||++|.+++.+|+..|..
T Consensus        81 ~vl~~~~~~~l---~~~~~---~v~l~~~~~~~~~Rl~~r~~  116 (171)
T PRK03731         81 IILTEENRHFM---RNNGI---VIYLCAPVSVLANRLEANPE  116 (171)
T ss_pred             ccCCHHHHHHH---HhCCE---EEEEECCHHHHHHHHccccc
Confidence             3344444433   33444   88999999999999988754

>PRK08233 hypothetical protein; Provisional

Probab=98.55  E-value=3.8e-07  Score=90.53  Aligned_cols=99  Identities=14%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------CCCC---cHHHHHHHHHHHHHCC--CcE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSG---TKVQCLTSASSALKKG--KSV   81 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------~~~~---~~~~~~~~~~~~L~~g--~~V   81 (761)
                      +.+|++.|+|||||||+|+.|++.++.. ..+..|.++.             +...   ........+.+.+...  ..|
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v   81 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNS-KALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI   81 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCC-ceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence            4789999999999999999999988622 2233333321             1000   1112223444434333  346


Q ss_pred             EEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           82 FLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        82 IID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |+|+.... ......+.     +   .+|||++|.+++++|..+|..
T Consensus        82 ivd~~~~~~~~~~~~~~-----d---~~i~l~~~~~~~~~R~~~R~~  120 (182)
T PRK08233         82 IVDYPFAYLNSEMRQFI-----D---VTIFIDTPLDIAMARRILRDF  120 (182)
T ss_pred             EEeeehhhccHHHHHHc-----C---EEEEEcCCHHHHHHHHHHHHh
Confidence            66763221 11222222     2   389999999999999888864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.55  E-value=2.4e-07  Score=88.82  Aligned_cols=94  Identities=23%  Similarity=0.358  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------CCCCCcHHHHHHHHHHHHHCCCcEEEeC--C
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------KGKSGTKVQCLTSASSALKKGKSVFLDR--C   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------~~~~~~~~~~~~~~~~~L~~g~~VIID~--t   86 (761)
                      -|+++|.||+||||+|.+|++.++  +.+|+-.++ .            +-...+.+..++.+...+..| +.|+|-  |
T Consensus         9 NILvtGTPG~GKstl~~~lae~~~--~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgC   85 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKTG--LEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGC   85 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHhC--CceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeeccc
Confidence            388999999999999999999999  444654222 1            122345566778888888774 666776  4


Q ss_pred             CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                      -+-   -.+|.++        +|+|.+|-+++..|+..|.-+.
T Consensus        86 d~F---perwfdl--------VvVLr~~~s~LY~RL~sRgY~e  117 (176)
T KOG3347|consen   86 DFF---PERWFDL--------VVVLRTPNSVLYDRLKSRGYSE  117 (176)
T ss_pred             Ccc---chhheeE--------EEEEecCchHHHHHHHHcCCCH
Confidence            443   3345555        8899999999999999998654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.54  E-value=6.1e-07  Score=91.25  Aligned_cols=104  Identities=18%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE--------------------Eeccccc----CCCCC-------c-HHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWAR--------------------ICQDTIN----KGKSG-------T-KVQ   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~--------------------I~~D~i~----~~~~~-------~-~~~   66 (761)
                      +..+|+|+|++||||||+++.|+..++..+..                    ++.+.+.    .+...       . ...
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            45689999999999999999999876411111                    1111110    00000       0 000


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ....+...+..|..+|+|...   .....+.+.  ....+.++++.++.+++.+|+.+|..
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~---~g~~~l~~~--~~~~~~I~i~~~s~~~l~~Rl~~R~~  139 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDW---QGARQVKKK--MPDAVSIFILPPSLEELERRLRGRGT  139 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCH---HHHHHHHHh--CCCcEEEEEECcCHHHHHHHHHhcCC
Confidence            124567888999999999732   222223222  22234455556778999999999875

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.52  E-value=8.9e-07  Score=86.18  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC------C-----------CCcHHHHHHHHHHHHHCCCcEEEe
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------K-----------SGTKVQCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~------~-----------~~~~~~~~~~~~~~L~~g~~VIID   84 (761)
                      +|.+.|+|||||||+|+.|++.++  +.+++...++.+      .           ....+..+..-+..+....++|++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVle   79 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG--LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLE   79 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC--CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEh
Confidence            688999999999999999999999  777887555321      1           011222333333444447789999


Q ss_pred             CCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +      ....|+..   ...-..|||.+|.++..+|+.+|.+
T Consensus        80 g------rLA~Wi~k---~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          80 G------RLAGWIVR---EYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             h------hhHHHHhc---cccceEEEEeCcHHHHHHHHHHhcC
Confidence            8      44455322   2223479999999999999999986

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.51  E-value=5.6e-07  Score=91.46  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC------------------------CCcHH-----------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK------------------------SGTKV-----------   65 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~------------------------~~~~~-----------   65 (761)
                      .+|.|+|++||||||+++.|.+ ++  +.+++.|.+....                        ..++.           
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~   79 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE   79 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence            5799999999999999999987 77  6778888772100                        00110           


Q ss_pred             -----------HHHHHHHHHHHCC---CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319           66 -----------QCLTSASSALKKG---KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (761)
Q Consensus        66 -----------~~~~~~~~~L~~g---~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~  131 (761)
                                 .....+.+.+...   ..+|+|..-+.......+     .+   .++++++|.++..+|+.+|.+    
T Consensus        80 ~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~-----~D---~vi~V~a~~e~~~~Rl~~R~~----  147 (194)
T PRK00081         80 ARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL-----VD---RVLVVDAPPETQLERLMARDG----  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh-----CC---eEEEEECCHHHHHHHHHHcCC----
Confidence                       0112223333322   568888855544322222     22   278999999999999999864    


Q ss_pred             CCCCChHHHHHHHHhhh
Q 004319          132 LQGGKAAAVVNRMLQKK  148 (761)
Q Consensus       132 ~~~~v~~~vI~r~~~~~  148 (761)
                         ...++...++..++
T Consensus       148 ---~s~e~~~~ri~~Q~  161 (194)
T PRK00081        148 ---LSEEEAEAIIASQM  161 (194)
T ss_pred             ---CCHHHHHHHHHHhC
Confidence               23345555555443

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=98.50  E-value=3.3e-08  Score=99.22  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             CcccccccccccccccccccccccccccC---CCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHH
Q 004319          230 QITEEKNSCLEGQEITSLLSDAAGEEVKG---TENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (761)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~  306 (761)
                      -|.|+++++.+++|.+.|-|..  +...+   +..-.+-|+.--. ...++|||||+||+|+||||++.||++++++|+.
T Consensus        87 ~t~~~~Lpak~vIHtvgP~~~~--d~~~~~~~L~~~~rs~L~la~-~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~  163 (200)
T KOG2633|consen   87 STGGYGLPAKRVIHTVGPRWKE--DKLQECYFLHSCYRSCLDLAI-EKLLSSIAFPKISSGRVGYPWEDAAKIELETIRV  163 (200)
T ss_pred             ecCCCCCceeEEEEecCchhhc--cchHHHHHHHHHHHHHHHHHH-HhccceeeeeeeeccccCccHHHHHHHHHHHHHH
Confidence            4567899999999999999986  22222   2233344454323 3789999999999999999999999999999999


Q ss_pred             HHHhcCCeEE---EEeccccc
Q 004319          307 FVNKLGNARL---VLVDLTQG  324 (761)
Q Consensus       307 f~~~~~~i~~---v~vD~~~~  324 (761)
                      ||+++.+..+   .+.|++..
T Consensus       164 ~f~~~~d~~l~~~~f~~~d~e  184 (200)
T KOG2633|consen  164 FFVKNKDSSLKTVPFLDYDSE  184 (200)
T ss_pred             HHhhCCCceEEEEEEeccCCc
Confidence            9999876433   33455443

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.50  E-value=2.2e-06  Score=85.85  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec-------cccc----CC---CCCcHHH-H---------H-HHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTIN----KG---KSGTKVQ-C---------L-TSASS   73 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~-------D~i~----~~---~~~~~~~-~---------~-~~~~~   73 (761)
                      +|++.|++||||||+++.|++.+   +..+..+..       +.++    ..   ....... +         . ..+..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   81 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKP   81 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999887   333332321       1111    11   0111111 0         1 22334


Q ss_pred             HHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 004319           74 ALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (761)
Q Consensus        74 ~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~v  140 (761)
                      .+..|..||+|...+..            .+...+..+ ........+|+|++|.+++.+|+.+|......  .....+.
T Consensus        82 ~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~  159 (200)
T cd01672          82 ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--EQEGLEF  159 (200)
T ss_pred             HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--hhhhHHH
Confidence            56688899999644332            222233333 32223446899999999999999999763210  0122333


Q ss_pred             HHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319          141 VNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       141 I~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      ..++...++......+. .+++++....++++..
T Consensus       160 ~~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~  192 (200)
T cd01672         160 HERVREGYLELAAQEPE-RIIVIDASQPLEEVLA  192 (200)
T ss_pred             HHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence            33333333322211222 4566676655555543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.49  E-value=9.8e-07  Score=90.53  Aligned_cols=122  Identities=22%  Similarity=0.289  Sum_probs=80.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHHCC--
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALKKG--   78 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~~g--   78 (761)
                      ++.||-+.|++||||||+|+.|...++ .....|++|++.....                 .+++-+.+. ...|.+|  
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~-L~~L~~g~~   85 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEH-LKDLKQGKP   85 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHH-HHHHHcCCc
Confidence            458999999999999999999999998 4456789999853211                 112222222 2233333  


Q ss_pred             -----------------------CcEEEeCCCCCHH-HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCC
Q 004319           79 -----------------------KSVFLDRCNLERE-QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQG  134 (761)
Q Consensus        79 -----------------------~~VIID~tn~~~~-~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~  134 (761)
                                             +.|||+|...... ..+++.++        -||+++|.++++.|...|...+++   
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~--------kIfvdtd~D~RliRri~RD~~~rg---  154 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDL--------KIFVDTDADVRLIRRIKRDVQERG---  154 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCE--------EEEEeCCccHHHHHHHHHHHHHhC---
Confidence                                   2378888555544 22233333        689999999999999999876554   


Q ss_pred             CChHHHHHHHH-------hhhcCCC
Q 004319          135 GKAAAVVNRML-------QKKELPK  152 (761)
Q Consensus       135 ~v~~~vI~r~~-------~~~e~P~  152 (761)
                      ..++.++.++.       .+|.+|.
T Consensus       155 ~~~e~vi~qy~~~vkp~~~~fIept  179 (218)
T COG0572         155 RDLESVIEQYVKTVRPMYEQFIEPT  179 (218)
T ss_pred             CCHHHHHHHHHHhhChhhhhccCcc
Confidence            56677776654       3455555

>PRK04040 adenylate kinase; Provisional

Probab=98.49  E-value=2.2e-06  Score=86.75  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=59.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------CCCCCcHH-----------HHHHHHH---HHHHCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------KGKSGTKV-----------QCLTSAS---SALKKGK   79 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------~~~~~~~~-----------~~~~~~~---~~L~~g~   79 (761)
                      +.+|+++|.|||||||+++.|.+.++..+.+++.+++.      .+...+++           +....+.   +.+..++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~   81 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG   81 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence            57899999999999999999999983225667766551      22221111           1112222   2344567


Q ss_pred             cEEEeCC--------CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           80 SVFLDRC--------NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        80 ~VIID~t--------n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      .+|+|+-        .+..-.+.-+.++ .   +-.+|+|++|+++..+|..+
T Consensus        82 ~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~---pd~ii~l~a~p~~i~~Rrl~  130 (188)
T PRK04040         82 PVIVDTHATIKTPAGYLPGLPEWVLEEL-N---PDVIVLIEADPDEILMRRLR  130 (188)
T ss_pred             CEEEeeeeeeccCCCCcCCCCHHHHhhc-C---CCEEEEEeCCHHHHHHHHhc
Confidence            7999992        1211122222222 1   12467888888888777664

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.47  E-value=6.5e-07  Score=91.13  Aligned_cols=111  Identities=18%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC----------------------C---cH-----------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----------------------G---TK-----------   64 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~----------------------~---~~-----------   64 (761)
                      .+|.|+|++||||||+++.+.+.+|  +.+++.|.+.....                      +   ++           
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g--~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~   79 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKG--IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDP   79 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhC--CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCH
Confidence            4799999999999999999998878  67788887731100                      1   00           


Q ss_pred             ---HH--------HHHHHHHHHHC---CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319           65 ---VQ--------CLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (761)
Q Consensus        65 ---~~--------~~~~~~~~L~~---g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~  130 (761)
                         ..        ..+.+.+.+..   ...+|+|..-+.......+     .+.   ++++++|.+++.+|+.+|..   
T Consensus        80 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~-----~D~---ii~V~a~~e~r~~Rl~~R~g---  148 (195)
T PRK14730         80 EERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDL-----CSE---IWVVDCSPEQQLQRLIKRDG---  148 (195)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhC-----CCE---EEEEECCHHHHHHHHHHcCC---
Confidence               00        01122222221   2456777755543322222     122   78899999999999999964   


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 004319          131 NLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus       131 ~~~~~v~~~vI~r~~~~~  148 (761)
                          ...+++..++..++
T Consensus       149 ----~s~e~~~~ri~~Q~  162 (195)
T PRK14730        149 ----LTEEEAEARINAQW  162 (195)
T ss_pred             ----CCHHHHHHHHHhCC
Confidence                23456666665544

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.47  E-value=8.9e-07  Score=87.21  Aligned_cols=125  Identities=18%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------------CCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------------KGKSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------------~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      +|+++|.||.||||+|++|. .++..+.+++ |.+.            +....+.+.....+...+ ...+.|+|+    
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~-el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~----   74 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN-ELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDS----   74 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH-HHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeec----
Confidence            68999999999999999999 8885554444 2221            111222333333333333 456889998    


Q ss_pred             HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (761)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~  165 (761)
                        .-..++  ...+.   +|+|.++++.+.+|+..|+..+..    +.+.+-..++.-.. -...|.|+.++.++.
T Consensus        75 --H~~hl~--~~~dl---VvVLR~~p~~L~~RLk~RGy~~eK----I~ENveAEi~~vi~-~EA~E~~~~v~evdt  138 (180)
T COG1936          75 --HLSHLL--PDCDL---VVVLRADPEVLYERLKGRGYSEEK----ILENVEAEILDVIL-IEAVERFEAVIEVDT  138 (180)
T ss_pred             --hhhhcC--CCCCE---EEEEcCCHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHHH-HHHHHhcCceEEEEC
Confidence              212121  22233   889999999999999999875432    22222222322211 112455677777764

>PRK04182 cytidylate kinase; Provisional

Probab=98.46  E-value=2.8e-06  Score=84.01  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC-----CCCC----------c-HHHHHHHHHHHHH-CCCcEEE
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-----GKSG----------T-KVQCLTSASSALK-KGKSVFL   83 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~-----~~~~----------~-~~~~~~~~~~~L~-~g~~VII   83 (761)
                      +|+|+|.|||||||+|+.|++.++  +.+++.|++ +.     +...          . ....+......+. .+..+|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg--~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi   79 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG--LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVL   79 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence            699999999999999999999998  566775443 11     1100          0 0111222222343 5678899


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |+....      +  + +..  ....|+|++|.+++.+|+..|..
T Consensus        80 ~g~~~~------~--~~~~~--~~~~V~l~a~~e~~~~Rl~~r~~  114 (180)
T PRK04182         80 EGRLAG------W--MAKDY--ADLKIWLKAPLEVRAERIAEREG  114 (180)
T ss_pred             EEeecc------e--EecCC--CCEEEEEECCHHHHHHHHHhccC
Confidence            883211      1  1 211  23578999999999999998864

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.44  E-value=3.6e-06  Score=84.49  Aligned_cols=134  Identities=17%  Similarity=0.336  Sum_probs=79.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-E--------------------eccccc----CCC-----------CCc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGK-----------SGT   63 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I--------------------~~D~i~----~~~-----------~~~   63 (761)
                      +.+|+|+||+||||||++++|.+.++..+.. +                    +.+.+.    .+.           +++
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            4689999999999999999999987643321 1                    111110    011           111


Q ss_pred             HHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           64 KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        64 ~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                         ....+...+..|+.+|+|.      ....+..++..+..+.+||+.+| .+.+.+|+.+|...       ..+++..
T Consensus        82 ---~~~~i~~~~~~gk~~il~~------~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~-------~~~~i~~  145 (183)
T PF00625_consen   82 ---SKSAIDKVLEEGKHCILDV------DPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE-------SEEEIEE  145 (183)
T ss_dssp             ---EHHHHHHHHHTTTEEEEEE------THHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC-------HHHHHHH
T ss_pred             ---ccchhhHhhhcCCcEEEEc------cHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc-------cHHHHHH
Confidence               1256678889999999997      34445555223667778888765 68888888777642       2334443


Q ss_pred             HHHhhhcCCCccCCceEEEEcCChhhH
Q 004319          143 RMLQKKELPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus       143 r~~~~~e~P~~~EgFd~V~vv~~~~ei  169 (761)
                      ++...-..-.....||.|+..++.++.
T Consensus       146 r~~~~~~~~~~~~~fd~vi~n~~le~~  172 (183)
T PF00625_consen  146 RLERAEKEFEHYNEFDYVIVNDDLEEA  172 (183)
T ss_dssp             HHHHHHHHHGGGGGSSEEEECSSHHHH
T ss_pred             HHHHHHHHHhHhhcCCEEEECcCHHHH
Confidence            433221111111129998876654443

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00235 udk uridine kinase

Probab=98.43  E-value=3e-06  Score=86.82  Aligned_cols=117  Identities=21%  Similarity=0.271  Sum_probs=69.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEecccccCCC------------C---C--cHHHHHHHHHHHHHCC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINKGK------------S---G--TKVQCLTSASSALKKG   78 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~D~i~~~~------------~---~--~~~~~~~~~~~~L~~g   78 (761)
                      +++..+|.|+|++|||||||++.|...++. ...++++|.+....            +   .  ....+.+ ..+.+..|
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~l~~g   81 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYE-HLKNLKNG   81 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHH-HHHHHHCC
Confidence            345689999999999999999999987652 45667777753110            0   0  1111122 22233333


Q ss_pred             -------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319           79 -------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (761)
Q Consensus        79 -------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~  133 (761)
                                               ..||+|+......  ..+...  .+   ..||+++|.++++.|..+|....++  
T Consensus        82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~~--~d---~~I~v~~~~~~~l~R~~~R~~~~rg--  152 (207)
T TIGR00235        82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRDL--MD---LKIFVDTPLDIRLIRRIERDINERG--  152 (207)
T ss_pred             CCEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHHh--CC---EEEEEECChhHHHHHHHHHHHHhhC--
Confidence                                     2367776444211  112111  22   3789999999999999999754322  


Q ss_pred             CCChHHHHHHH
Q 004319          134 GGKAAAVVNRM  144 (761)
Q Consensus       134 ~~v~~~vI~r~  144 (761)
                       ...+.++.++
T Consensus       153 -~~~~~~~~~~  162 (207)
T TIGR00235       153 -RSLDSVIDQY  162 (207)
T ss_pred             -CCHHHHHHHH
Confidence             3445455443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.43  E-value=8.9e-07  Score=86.99  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCCC-----------cHHHHH-HHHHHHHHCCCcEEE
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSG-----------TKVQCL-TSASSALKKGKSVFL   83 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~~-----------~~~~~~-~~~~~~L~~g~~VII   83 (761)
                      +|+|.|.+||||||+|+.|++.++  +.+++.|++..      +...           .....+ ..+......+..+||
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi   79 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS--LKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVL   79 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC--CceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEE
Confidence            799999999999999999999998  66688755421      1100           001112 222333335678999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |+....      |......+   ..|++++|.+++.+|+.+|..
T Consensus        80 ~g~~~~------~~~~~~~d---~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        80 ESRLAG------WIVREYAD---VKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             Eecccc------eeecCCcC---EEEEEECCHHHHHHHHHHccC
Confidence            984321      11001122   378999999999999999975

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.43  E-value=9e-07  Score=89.51  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ||.+.|.|||||||+|+.|++.++ ...+|+.|++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~-~~~~i~~Ddf~   35 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP-NCCVIHQDDFF   35 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-CCeEEcccccc
Confidence            588999999999999999999874 26678888774

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK07667 uridine kinase; Provisional

Probab=98.42  E-value=2e-06  Score=87.26  Aligned_cols=104  Identities=18%  Similarity=0.209  Sum_probs=67.5

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC--------CCC---------cHHHHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG--------KSG---------TKVQCLTSASSAL   75 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~--------~~~---------~~~~~~~~~~~~L   75 (761)
                      -.+.+.+|.|.|+|||||||+|+.|.+.++   .+...++.|++...        ...         ....+...+...|
T Consensus        13 ~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L   92 (193)
T PRK07667         13 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKL   92 (193)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhh
Confidence            345668999999999999999999988764   45678888886321        110         1111112222333


Q ss_pred             HCC-------------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           76 KKG-------------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        76 ~~g-------------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +.+                         ..+|+|+..+....-..+.+.        .|++++|.++.++|+.+|..
T Consensus        93 ~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~--------~v~V~~~~~~~~~R~~~r~~  161 (193)
T PRK07667         93 QNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHY--------MVYLDCPRETRFLRESEETQ  161 (193)
T ss_pred             cCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceE--------EEEEECCHHHHHHHHhcccH
Confidence            332                         347788876544332233222        88999999999999998764

>PRK13975 thymidylate kinase; Provisional

Probab=98.42  E-value=3e-06  Score=85.53  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=61.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----c----CCCCCc----------HHHHHHHHHHHHHCCCc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----N----KGKSGT----------KVQCLTSASSALKKGKS   80 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~----~~~~~~----------~~~~~~~~~~~L~~g~~   80 (761)
                      ..+|++.|++||||||+++.|++.++..+.....|..     +    .+....          +.+.++.+...+.. ..
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~~   80 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-RD   80 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CE
Confidence            3689999999999999999999998843332222211     1    110110          11112233444444 67


Q ss_pred             EEEeCCCCCHHHH-------HHHH-Hh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           81 VFLDRCNLEREQR-------TDFV-KL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        81 VIID~tn~~~~~R-------~~~~-~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ||.|...++..-.       ..|. .+ .....+-.+|+|++|.+++.+|+..|.
T Consensus        81 vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         81 VVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             EEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            8999743321000       0111 11 111112248999999999999999886

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.42  E-value=7.2e-07  Score=89.39  Aligned_cols=110  Identities=23%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC------------------------CcHH------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS------------------------GTKV------------   65 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~------------------------~~~~------------   65 (761)
                      +|.|+|.|||||||+++.+.+ ++  +.+++.|.+.....                        ..+.            
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~   77 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LG--IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK   77 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CC--CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence            489999999999999999988 77  66788887721100                        0100            


Q ss_pred             ----------HHHHHHHHHHHC---CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319           66 ----------QCLTSASSALKK---GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (761)
Q Consensus        66 ----------~~~~~~~~~L~~---g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~  132 (761)
                                .....+.+.+..   ...+|+|...+.......+.+        .++++++|.++..+|+.+|..     
T Consensus        78 ~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D--------~vv~V~a~~~~ri~Rl~~Rd~-----  144 (179)
T cd02022          78 RKKLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVD--------RVIVVDAPPEIQIERLMKRDG-----  144 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCC--------eEEEEECCHHHHHHHHHHcCC-----
Confidence                      011222222221   245777875444332222322        278999999999999999975     


Q ss_pred             CCCChHHHHHHHHhhhc
Q 004319          133 QGGKAAAVVNRMLQKKE  149 (761)
Q Consensus       133 ~~~v~~~vI~r~~~~~e  149 (761)
                        ...+++..++..++.
T Consensus       145 --~s~~~~~~r~~~Q~~  159 (179)
T cd02022         145 --LSEEEAEARIASQMP  159 (179)
T ss_pred             --CCHHHHHHHHHhcCC
Confidence              344666666666543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.40  E-value=1.9e-06  Score=100.76  Aligned_cols=121  Identities=13%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH------------HHHH-HHHHHHHHCCCcEEEeC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQCL-TSASSALKKGKSVFLDR   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~------------~~~~-~~~~~~L~~g~~VIID~   85 (761)
                      ...|+|+|.|||||||+++.|++.++  +.+++.|.+-....+ +.            +++. +.+.+.+.. ...||..
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~--~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~-~~~VIs~   82 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMR--LPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLED-FDGIFSL   82 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhC--CCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEC
Confidence            35799999999999999999999999  555888776322211 00            1111 223333333 3445533


Q ss_pred             ---CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 004319           86 ---CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus        86 ---tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~  148 (761)
                         .....+.|..+.++ +..+.   +|||+.|.+++.+|+..+..++ .+.. .+.+.+.+++++.
T Consensus        83 GGG~v~~~~n~~~L~~~~~~~g~---vv~L~~~~~~l~~Rl~~~~~RP-ll~~-~~~~~~~~l~~~R  144 (542)
T PRK14021         83 GGGAPMTPSTQHALASYIAHGGR---VVYLDADPKEAMERANRGGGRP-MLNG-DANKRWKKLFKQR  144 (542)
T ss_pred             CCchhCCHHHHHHHHHHHhcCCE---EEEEECCHHHHHHHHhCCCCCC-CCCC-CcHHHHHHHHHHH
Confidence               45566777776665 66665   8999999999999987554332 1211 2344555555543

>TIGR00152 dephospho-CoA kinase

Probab=98.39  E-value=2.2e-06  Score=86.36  Aligned_cols=109  Identities=22%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcHH-----------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTKV-----------   65 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~~-----------   65 (761)
                      +|.|+|.+||||||+++.|.+..+  +.+++.|.+..                         |.. .+.           
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~i-dr~~L~~~vf~~~~   77 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH--FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGEL-DRKALGERVFNDPE   77 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC--CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCC-CHHHHHHHHhCCHH
Confidence            489999999999999999998765  67788887721                         110 000           


Q ss_pred             -----------HHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319           66 -----------QCLTSASSAL----KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (761)
Q Consensus        66 -----------~~~~~~~~~L----~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~  130 (761)
                                 .....+.+.+    ..|..+|++...+.......+     .+   .++++++|.+++.+|+.+|..   
T Consensus        78 ~~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~-----~D---~vv~V~~~~~~~~~Rl~~R~~---  146 (188)
T TIGR00152        78 ELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSL-----CD---RVIVVDVSPQLQLERLMQRDN---  146 (188)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHh-----CC---EEEEEECCHHHHHHHHHHcCC---
Confidence                       0011222222    234568888755543222222     22   278899999999999999984   


Q ss_pred             CCCCCChHHHHHHHHhhh
Q 004319          131 NLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus       131 ~~~~~v~~~vI~r~~~~~  148 (761)
                          ...+++..++..+.
T Consensus       147 ----~s~~~~~~r~~~q~  160 (188)
T TIGR00152       147 ----LTEEEVQKRLASQM  160 (188)
T ss_pred             ----CCHHHHHHHHHhcC
Confidence                23456666665553

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=98.38  E-value=1.5e-07  Score=89.73  Aligned_cols=98  Identities=8%  Similarity=0.022  Sum_probs=66.0

Q ss_pred             CcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCCC
Q 004319          195 PDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSS  274 (761)
Q Consensus       195 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (761)
                      ...+++..+++.+++.+. ..  .|...       .|.++++.|.+++|.+.+..+. ......+..-++.++. .....
T Consensus        35 i~~~~G~~~~~~~~~~~~-~~--~G~~~-------~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~-~a~~~  102 (133)
T cd03330          35 IKRAGGSVIEREAVRKAP-IP--VGEAV-------ITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALA-LADEL  102 (133)
T ss_pred             HHHHhCHHHHHHHHHcCC-CC--CCeEE-------EEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHH-HHHHc
Confidence            344455555665555321 11  23332       4678899999999999876443 2222223344445554 44457


Q ss_pred             CCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319          275 DVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (761)
Q Consensus       275 ~~~SiafPaIStg~~gfp~~~aa~i~~~~v  304 (761)
                      +++|||||+||||++|||+++++++++++|
T Consensus       103 ~~~sIA~P~igtG~~g~~~~~~a~i~~~~i  132 (133)
T cd03330         103 GIESVAFPAMGTGVGGLPKEDVARLMVEVI  132 (133)
T ss_pred             CCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence            899999999999999999999999999886

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>PRK13973 thymidylate kinase; Provisional

Probab=98.37  E-value=8e-06  Score=84.21  Aligned_cols=108  Identities=20%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEe-------ccccc----C---CCCCcHH----------HH-HHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARIC-------QDTIN----K---GKSGTKV----------QC-LTSA   71 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~-------~D~i~----~---~~~~~~~----------~~-~~~~   71 (761)
                      ..+|++-|++||||||+++.|.+.+   +..+..+.       .+.++    .   .......          +. ...+
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i   82 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVI   82 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999887   43333331       12221    1   1111111          11 1346


Q ss_pred             HHHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           72 SSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+|..|..||.|...++.            .+...+... ...-.+-.+++|++|.+++.+|+.+|..
T Consensus        83 ~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~  151 (213)
T PRK13973         83 RPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRG  151 (213)
T ss_pred             HHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence            6788899999999965322            122222222 1112234689999999999999999964

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.37  E-value=2.3e-06  Score=93.32  Aligned_cols=127  Identities=14%  Similarity=0.121  Sum_probs=71.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc-H------------HHH-HHHHHHHHHCCCcEEE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-K------------VQC-LTSASSALKKGKSVFL   83 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~-~------------~~~-~~~~~~~L~~g~~VII   83 (761)
                      .+...|+|+|+|||||||+++.|++.++.+  +++.|.......+. .            ... .+.+.+.+.....+||
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~--~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI  208 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARLGVP--FVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVL  208 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHcCCC--EEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEE
Confidence            455689999999999999999999999944  46766553211110 0            011 1233333443444555


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                      .........-..+..+...   ..+|||++|.+++.+|+.+|.............+.+..++....
T Consensus       209 ~~Ggg~v~~~~~~~~l~~~---~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~  271 (309)
T PRK08154        209 ATGGGIVSEPATFDLLLSH---CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE  271 (309)
T ss_pred             ECCCchhCCHHHHHHHHhC---CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            5433221111112123122   34899999999999999988643211112233455655555444

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.37  E-value=2.4e-06  Score=86.64  Aligned_cols=127  Identities=20%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC---C----eEEEecccccC----------C--C-------CCcHHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSAR---P----WARICQDTINK----------G--K-------SGTKVQCLTSASSAL   75 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~---~----~~~I~~D~i~~----------~--~-------~~~~~~~~~~~~~~L   75 (761)
                      ||.|+|+|||||||||++|...++.   .    ...++.|.+..          +  .       ....+.+ ......|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l-~~~l~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLL-KEDLKAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHH-HHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHH-HHHHHHH
Confidence            6899999999999999999998872   2    34566665421          0  0       1122233 3334456


Q ss_pred             HCCC-------------------------cEEEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           76 KKGK-------------------------SVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        76 ~~g~-------------------------~VIID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                      +.|+                         .+|+++...- ...-..+.++        .||++++.++++.|...|....
T Consensus        80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~--------~ifld~~~~~~l~Rri~RD~~~  151 (194)
T PF00485_consen   80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDL--------KIFLDADEDLRLERRIQRDVAE  151 (194)
T ss_dssp             HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SE--------EEEEEE-HHHHHHHHHHHHHHH
T ss_pred             hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeeccccee--------EEEecccHHHHHHHHhhhhccc
Confidence            5543                         3788886532 2222233223        7899999999999999998654


Q ss_pred             CCCCCCChHHHHHHHH------hhhcCCCccCCceEEE
Q 004319          130 GNLQGGKAAAVVNRML------QKKELPKLSEGFSRIT  161 (761)
Q Consensus       130 ~~~~~~v~~~vI~r~~------~~~e~P~~~EgFd~V~  161 (761)
                      ++   ..+++++.++.      .++..|.... .|-|+
T Consensus       152 rG---~~~~~~~~~~~~~~~~~~~~I~p~~~~-ADivi  185 (194)
T PF00485_consen  152 RG---RSPEEVIAQYERVRPGYERYIEPQKER-ADIVI  185 (194)
T ss_dssp             S----S-HHHHHHHHHTHHHHHHHCTGGGGGG--SEEE
T ss_pred             cC---CcceeEEEEeecCChhhhhheeccccc-cEEEE
Confidence            43   45677766654      2355665333 34443

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.35  E-value=7.6e-06  Score=82.89  Aligned_cols=152  Identities=18%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec--c---------ccc--CCCCCcHHH-----------HHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--D---------TIN--KGKSGTKVQ-----------CLTSAS   72 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~--D---------~i~--~~~~~~~~~-----------~~~~~~   72 (761)
                      ..+|++.|++||||||+++.|.+.+.   ..+.....  +         .+.  ......+..           ....+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   82 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK   82 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998763   11221111  1         001  111111111           112344


Q ss_pred             HHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHH
Q 004319           73 SALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAA  139 (761)
Q Consensus        73 ~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~  139 (761)
                      ..+..|..||+|...++.            .+-..+... .....+-.+|+|++|.+++.+|+.+|.....  ....+.+
T Consensus        83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~--~~~~~~~  160 (205)
T PRK00698         83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDR--IEQEGLD  160 (205)
T ss_pred             HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch--hhhhhHH
Confidence            556788999999643332            111122222 2112234689999999999999999974210  0011223


Q ss_pred             HHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319          140 VVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       140 vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      ...++...++.......+ .++++++..+++++..
T Consensus       161 ~~~~~~~~y~~~~~~~~~-~~~~Id~~~~~e~v~~  194 (205)
T PRK00698        161 FFERVREGYLELAEKEPE-RIVVIDASQSLEEVHE  194 (205)
T ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHH
Confidence            344444333322212222 4566666555554433

>PLN02348 phosphoribulokinase

Probab=98.34  E-value=3.8e-06  Score=93.29  Aligned_cols=120  Identities=17%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC------------------CeEEEecccccC---------CC------CC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR------------------PWARICQDTINK---------GK------SG   62 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~------------------~~~~I~~D~i~~---------~~------~~   62 (761)
                      ....|.||-|.|.|||||||||++|...++.                  ....|+.|++..         +.      ..
T Consensus        45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~  124 (395)
T PLN02348         45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN  124 (395)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccc
Confidence            3457889999999999999999999988752                  356789988841         10      01


Q ss_pred             cHHHHHHHHHHHHHCCC------------------------cEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHH
Q 004319           63 TKVQCLTSASSALKKGK------------------------SVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLC  118 (761)
Q Consensus        63 ~~~~~~~~~~~~L~~g~------------------------~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~  118 (761)
                      +.+ .+......|+.|+                        .+||++.......  .+.++  .+   ..||+++|.++.
T Consensus       125 dfD-ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~lr~l--~D---~~IyVd~~~dvr  196 (395)
T PLN02348        125 NFD-LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--RVRDL--LD---FSIYLDISDDVK  196 (395)
T ss_pred             cHH-HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--ccccc--Cc---EEEEEECCHHHH
Confidence            122 2334445666653                        3677774332211  11111  22   278999999999


Q ss_pred             HHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319          119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus       119 ~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      +.|..+|....++   ...+++..++.+
T Consensus       197 l~RRI~RD~~eRG---~S~EeV~~~i~a  221 (395)
T PLN02348        197 FAWKIQRDMAERG---HSLESIKASIEA  221 (395)
T ss_pred             HHHHHHhhHhhcC---CCHHHHHHHHHh
Confidence            9888888754333   455666666543

>PHA02595 tk

Probab=98.32  E-value=2.7e-06  Score=83.47  Aligned_cols=113  Identities=16%  Similarity=0.083  Sum_probs=80.6

Q ss_pred             EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCCCCCCCC
Q 004319          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~--~~~~~G~avvT~l~~~~~~~  421 (761)
                      -|++++|||++....   ..++|||++|..+. +|+||+.+|.++.+ ++.++.++..  +..+.|++.+.+.      .
T Consensus         2 ~i~~v~GDl~~~~~~---~~~~i~h~~N~~g~-mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~------~   70 (154)
T PHA02595          2 IVDYIKGDIVALFLQ---GKGNIAHGCNCFHT-MGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEK------Y   70 (154)
T ss_pred             eEEEECCcccccccC---CCceEEEeeCCCCc-CChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEe------e
Confidence            367899999887321   25799999999999 99999999999995 6666655542  4567899976431      1


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH------HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF------LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a------~siaf~~~~  476 (761)
                      ++.+-++|+|..+- |++..+        -..+.|++|++++.+.+      .||++|.++
T Consensus        71 ~~~~~~~I~nl~tq-~~~~~~--------~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG  122 (154)
T PHA02595         71 VGGHKAYCFNLYTQ-FDPGPN--------LEYSALMNCFEELNEVFEGTLFKPTIYIPRIG  122 (154)
T ss_pred             ccCCCEEEEEEecc-CCCCCC--------CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCC
Confidence            23344899999775 755432        23567888888887775      467777553

4 hypothetical protein; Provisional

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.32  E-value=1.3e-06  Score=89.07  Aligned_cols=109  Identities=22%  Similarity=0.203  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC--------------C--------C--cH-------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK--------------S--------G--TK-------------   64 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~--------------~--------~--~~-------------   64 (761)
                      +|.|+|.+||||||+++.+. ..+  +..++.|.+....              +        +  ++             
T Consensus         1 ~i~itG~~gsGKst~~~~l~-~~g--~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~   77 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILE-ELG--AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK   77 (196)
T ss_pred             CEEEECCCCccHHHHHHHHH-HCC--CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence            57899999999999999775 456  6778888772100              0        0  00             


Q ss_pred             ---------HHHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319           65 ---------VQCLTSASSAL---KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (761)
Q Consensus        65 ---------~~~~~~~~~~L---~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~  132 (761)
                               ....+.+.+.+   ..+..+|+|..-+.......+.+.        ++++++|.++..+|+.+|..     
T Consensus        78 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~--------vi~V~a~~e~r~~RL~~R~g-----  144 (196)
T PRK14732         78 LKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDA--------TVTVDSDPEESILRTISRDG-----  144 (196)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCE--------EEEEECCHHHHHHHHHHcCC-----
Confidence                     00111122222   234567888866655433333222        88999999999999999964     


Q ss_pred             CCCChHHHHHHHHhhh
Q 004319          133 QGGKAAAVVNRMLQKK  148 (761)
Q Consensus       133 ~~~v~~~vI~r~~~~~  148 (761)
                        ...+++..++..++
T Consensus       145 --~s~e~a~~ri~~Q~  158 (196)
T PRK14732        145 --MKKEDVLARIASQL  158 (196)
T ss_pred             --CCHHHHHHHHHHcC
Confidence              24466666666654

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.31  E-value=3.4e-06  Score=84.69  Aligned_cols=110  Identities=19%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC---------CC-----cHHHHHHHHHHHHHCC------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK---------SG-----TKVQCLTSASSALKKG------   78 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~---------~~-----~~~~~~~~~~~~L~~g------   78 (761)
                      +|.|.|+|||||||||+.|.+.+.   .....|+.|.+....         ..     ..+.+.+.+ ..++.|      
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l-~~l~~~~~~~~p   79 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNL-HDLLNGKEVELP   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHH-HHHHCCCeeecc
Confidence            589999999999999999998863   457789998886411         11     112222222 223333      


Q ss_pred             --------------------CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHH-HHHHHHhcccccCCCCCCCh
Q 004319           79 --------------------KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL-CISRSVKRIEHEGNLQGGKA  137 (761)
Q Consensus        79 --------------------~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~-~~~R~~~R~~~~~~~~~~v~  137 (761)
                                          ..+|+|+.......-..+.+        ..||+++|.++ ++.|-..|....++   ...
T Consensus        80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d--------~~I~vd~~~~~~rl~rri~RD~~~rg---~~~  148 (179)
T cd02028          80 IYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLD--------IRVAVSGGVHLNRLLRRVVRDIQFRG---YSA  148 (179)
T ss_pred             cceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcC--------EEEEEeCCccHHHHHHHHHHhHHhhC---CCH
Confidence                                23788886654332222322        27899999998 88888888765443   556


Q ss_pred             HHHHHH
Q 004319          138 AAVVNR  143 (761)
Q Consensus       138 ~~vI~r  143 (761)
                      ++++.+
T Consensus       149 ~~~i~~  154 (179)
T cd02028         149 ELTILM  154 (179)
T ss_pred             HHHhhh
Confidence            666666

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.29  E-value=1.5e-05  Score=80.28  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEec-------cccc----CCC--CCc---H--------H-HHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQ-------DTIN----KGK--SGT---K--------V-QCLTSAS   72 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~-------D~i~----~~~--~~~---~--------~-~~~~~~~   72 (761)
                      .+|++.|++||||||+++.|++.++.   .+.++..       +.++    .+.  ..+   .        . .....+.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~   83 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK   83 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999988752   2222211       1111    010  011   0        0 1113345


Q ss_pred             HHHHCCCcEEEeCCCCCHH---------HHHHHHHh-CCC-C-ceEEEEEEeCCHHHHHHHHHhccc
Q 004319           73 SALKKGKSVFLDRCNLERE---------QRTDFVKL-GGP-E-VDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        73 ~~L~~g~~VIID~tn~~~~---------~R~~~~~l-~~~-~-~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+..|..||+|...++..         ....+..+ ... . ..-.+|+|++|.+++.+|+..|..
T Consensus        84 ~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~  150 (195)
T TIGR00041        84 PALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE  150 (195)
T ss_pred             HHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            5667888899997433321         11111112 111 1 133589999999999999999865

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.29  E-value=4.4e-06  Score=84.23  Aligned_cols=104  Identities=19%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc----cc--------CCC--CCcHHHH------HHHHHHH---HHCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----IN--------KGK--SGTKVQC------LTSASSA---LKKG   78 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~----i~--------~~~--~~~~~~~------~~~~~~~---L~~g   78 (761)
                      +|++.|++||||||+++.|.+.++  +..+..+.    ..        .+.  .....+.      .+...+.   +..+
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~--~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~   78 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLG--YEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTG   78 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            489999999999999999998776  32232221    11        110  0000110      1122222   3478


Q ss_pred             CcEEEeCCCCCHH---------------HHH---HHHHh--CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           79 KSVFLDRCNLERE---------------QRT---DFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        79 ~~VIID~tn~~~~---------------~R~---~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..||+|...++..               ...   .+.+.  .....+-.+|+|++|.++|.+|+.+|.+
T Consensus        79 ~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r  147 (193)
T cd01673          79 QGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR  147 (193)
T ss_pred             CceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence            8999999655421               111   12222  2223345689999999999999999875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.28  E-value=1.3e-05  Score=86.30  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHH-HHCCCcEEEeCCCCC--HHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSA-LKKGKSVFLDRCNLE--REQRTD   95 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~-L~~g~~VIID~tn~~--~~~R~~   95 (761)
                      ...+|+|+|++||||||+++.|. ..|  +..++  .+.   ..-...+.+.+... ....-.+++|..+..  ...+..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g--~~~~d--~~~---~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~   76 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLG--YYCVD--NLP---PSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEA   76 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcC--CeEEC--CcC---HHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHH
Confidence            44689999999999999999996 445  43332  221   00111222222211 112235888997653  234444


Q ss_pred             HHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           96 FVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        96 ~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      +..++..+..+.+|||+++.+++.+|+.++
T Consensus        77 ~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         77 LDELRERGIDVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             HHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence            444444578888999999999999999753

>PLN02422 dephospho-CoA kinase

Probab=98.27  E-value=3.6e-06  Score=87.88  Aligned_cols=108  Identities=20%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcH------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTK------------   64 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~------------   64 (761)
                      +|.|+|.+||||||+++.|. ++|  +.+++.|.+..                         |.. ++            
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g--~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~i-dR~~L~~~VF~d~~   78 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSG--IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEV-DREKLGQIVFSDPS   78 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCC--CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcC-CHHHHHHHHhCCHH
Confidence            69999999999999999998 577  67799887721                         110 00            


Q ss_pred             ----------HHHHHHHHHHH----HC-CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           65 ----------VQCLTSASSAL----KK-GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        65 ----------~~~~~~~~~~L----~~-g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                ......+.+.+    .. ...+|+|..-+.......+.     +.   ++++++|.++..+|+.+|..  
T Consensus        79 ~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~-----D~---vI~V~a~~e~ri~RL~~R~g--  148 (232)
T PLN02422         79 KRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWT-----KP---VVVVWVDPETQLERLMARDG--  148 (232)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhC-----CE---EEEEECCHHHHHHHHHHcCC--
Confidence                      00111111111    12 24688888666544333332     22   88899999999999999974  


Q ss_pred             CCCCCCChHHHHHHHHhhh
Q 004319          130 GNLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus       130 ~~~~~~v~~~vI~r~~~~~  148 (761)
                           ...+++..++..++
T Consensus       149 -----~s~eea~~Ri~~Q~  162 (232)
T PLN02422        149 -----LSEEQARNRINAQM  162 (232)
T ss_pred             -----CCHHHHHHHHHHcC
Confidence                 23466666665544

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.27  E-value=4.7e-06  Score=85.48  Aligned_cols=129  Identities=16%  Similarity=0.096  Sum_probs=77.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----------------------cH-----------
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----------------------TK-----------   64 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----------------------~~-----------   64 (761)
                      ..|.+|.|+|.+||||||+++.+.+.++  +.+++.|.+......                      ++           
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg--~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~   81 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLN--LNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESK   81 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcC--CeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCH
Confidence            3567899999999999999999998888  556887776211100                      00           


Q ss_pred             -----------HHHHHHHHHHHHC--CCcEEEeCCCCCHHHH--HHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           65 -----------VQCLTSASSALKK--GKSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        65 -----------~~~~~~~~~~L~~--g~~VIID~tn~~~~~R--~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                 ....+.+.+.+..  ...+|+|..-+.....  ..+.+        .++++.+|.++..+|+.+|..  
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D--------~vi~V~a~~e~ri~Rl~~Rd~--  151 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLK--------KVIVIKADLETRIRRLMERDG--  151 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCC--------EEEEEECCHHHHHHHHHHcCC--
Confidence                       0011222333332  2357788855533211  11211        178889999999999999975  


Q ss_pred             CCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc
Q 004319          130 GNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC  163 (761)
Q Consensus       130 ~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv  163 (761)
                           ...+++..++..++......+--|.|+..
T Consensus       152 -----~s~~~a~~ri~~Q~~~eek~~~aD~VI~N  180 (204)
T PRK14733        152 -----KNRQQAVAFINLQISDKEREKIADFVIDN  180 (204)
T ss_pred             -----CCHHHHHHHHHhCCCHHHHHHhCCEEEEC
Confidence                 23466666666654433333434444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.26  E-value=8.1e-06  Score=97.85  Aligned_cols=127  Identities=20%  Similarity=0.247  Sum_probs=80.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC----------CCCcHH---HHH----HHHHHHH-HC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG----------KSGTKV---QCL----TSASSAL-KK   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~----------~~~~~~---~~~----~~~~~~L-~~   77 (761)
                      ...+++|+|+||+||||+|++|.+.++   ....+++.|.++..          +.....   ++.    ..+...+ ..
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~  293 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT  293 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            346899999999999999999998875   33444555544311          111111   111    1122222 35


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh-CCCCc----eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL-GGPEV----DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l-~~~~~----~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~  148 (761)
                      |..+|+|++|.....|..+++. ++.+.    .+.+|..-++.+...+|+..|....   .++.+++.+.++++.+
T Consensus       294 GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~---~~~~~e~~~~~~~~~~  366 (664)
T PTZ00322        294 DGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEM---FPGAPEDFVDRYYEVI  366 (664)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence            8899999999999999888777 65553    4555555566666678777775432   1235667777766654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.25  E-value=1.7e-05  Score=80.45  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEeccccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTIN   57 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~   57 (761)
                      +|.|+|++||||||+++.|...++ ....+++.|.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~   37 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            588999999999999999988763 346678888764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.24  E-value=5.5e-06  Score=79.56  Aligned_cols=105  Identities=21%  Similarity=0.261  Sum_probs=72.2

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC-------cHHHHH----HHHHHHHHCCCcE
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG-------TKVQCL----TSASSALKKGKSV   81 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~-------~~~~~~----~~~~~~L~~g~~V   81 (761)
                      ..++-++|+|.|++||||||+|=+|.+.+-   ...-+++.|.++.|...       ++.+.+    +.+.-....|-..
T Consensus        27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic  106 (207)
T KOG0635|consen   27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC  106 (207)
T ss_pred             hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence            345568999999999999999999877653   33446788888755422       222222    2223333444445


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |..-...++.+|...+.+ .+.  .+.-||+++|.++|.+|-
T Consensus       107 iaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  107 IASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             eehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence            555566777888888888 443  577899999999998874

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.23  E-value=1.7e-05  Score=82.15  Aligned_cols=152  Identities=17%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe-------c-------cc-------c---c-CCC----CCcHHH------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC-------Q-------DT-------I---N-KGK----SGTKVQ------   66 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~-------~-------D~-------i---~-~~~----~~~~~~------   66 (761)
                      +|++-|.-||||||+++.|++.++.....-.       .       +.       +   . +..    .....+      
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            5889999999999999999988762111000       0       00       1   1 111    111111      


Q ss_pred             ----HHHHHHHHHHCCCcEEEeCCCCCH---------------HHHHHHHHh-----CCCCceEEEEEEeCCHHHHHHHH
Q 004319           67 ----CLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKL-----GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        67 ----~~~~~~~~L~~g~~VIID~tn~~~---------------~~R~~~~~l-----~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                          ..+.+...+..|..||+|+..++.               ..-..+..+     .....+-.+|+|++|.+.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence                112233345678899999974332               111111111     11112336899999999999999


Q ss_pred             HhcccccCCCCCCChHH---HHHHHHhhhcCCCccCCceEEEEcCCh--hhHHHHHHHhh
Q 004319          123 VKRIEHEGNLQGGKAAA---VVNRMLQKKELPKLSEGFSRITLCQNE--NDVQAALDTYS  177 (761)
Q Consensus       123 ~~R~~~~~~~~~~v~~~---vI~r~~~~~e~P~~~EgFd~V~vv~~~--~ei~~~l~~~~  177 (761)
                      .+|+....   .....+   .+...+..+-.+...+ ...+++++..  +++++++....
T Consensus       161 ~~R~~~~e---~~~~~~yl~~l~~~y~~~~~~~~~~-~~~~i~id~~~~~~~e~i~~~I~  216 (219)
T cd02030         161 KKRGDPHE---MKVTSAYLQDIENAYKKTFLPEISE-HSEVLQYDWTEAGDTEKVVEDIE  216 (219)
T ss_pred             HHcCCchh---hcccHHHHHHHHHHHHHHHHHhhcc-CCCEEEEeCCChhhHHHHHHHHH
Confidence            99875321   123333   3333343332222222 2467777765  77777666543

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.23  E-value=1.4e-05  Score=82.26  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .+.+|.|+|.+||||||+++.|.. ++  +..++.|.+
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g--~~v~d~D~i   38 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MG--CELFEADRV   38 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CC--CeEEeccHH
Confidence            467899999999999999999985 66  666777744

>PRK12338 hypothetical protein; Provisional

Probab=98.23  E-value=7.8e-06  Score=88.85  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=73.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE-ecccccCC-------CC------C---cH-----------------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARI-CQDTINKG-------KS------G---TK-----------------   64 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I-~~D~i~~~-------~~------~---~~-----------------   64 (761)
                      .|.+|++.|+|||||||+|+.|++.++  +.++ +.|.+++-       +.      .   .|                 
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~--~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~   80 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLN--IKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC   80 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCC--CeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence            578999999999999999999999998  4445 56655310       00      0   00                 


Q ss_pred             ----HHH-------HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           65 ----VQC-------LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        65 ----~~~-------~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                          .++       ...+.+++..|.++|||+..+.........  ......+.++++..+.+..++|...|..
T Consensus        81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~--~~~~~~v~~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ--FEENASIHFFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh--hcccCceEEEEEECCHHHHHHHHHHhhh
Confidence                011       134556678899999999999876655321  1122356677777889999999999875

>PLN02924 thymidylate kinase

Probab=98.22  E-value=2.1e-05  Score=81.74  Aligned_cols=107  Identities=20%  Similarity=0.215  Sum_probs=66.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-c--c-----cc----CCC-CCcH----------HHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-D--T-----IN----KGK-SGTK----------VQCLTS   70 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-D--~-----i~----~~~-~~~~----------~~~~~~   70 (761)
                      ..+..+|++.|+.||||||+++.|.+.+.   .....+.. +  .     ++    ++. ...+          .+....
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34567999999999999999999998875   22222210 0  0     11    111 1111          112245


Q ss_pred             HHHHHHCCCcEEEeCCCCCHHH-------HHHHHH-h-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319           71 ASSALKKGKSVFLDRCNLEREQ-------RTDFVK-L-GGPEVDVHAVVLDLPAKLCISRSV  123 (761)
Q Consensus        71 ~~~~L~~g~~VIID~tn~~~~~-------R~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~R~~  123 (761)
                      +..+|..|..||.|...++.-.       ...|+. + ...-.+=.+|+|++|.+++.+|..
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            6778889999999997764311       112333 2 222223468999999999999964

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.18  E-value=7.9e-06  Score=83.56  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .+|.|+|.+||||||+++.|.. +|  +.+++.|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g--~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EG--FLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CC--CeEEeCcHH
Confidence            3699999999999999999986 67  778998865

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.18  E-value=2e-05  Score=89.20  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------C-------------------CCC-----cH-
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------G-------------------KSG-----TK-   64 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~-------------------~~~-----~~-   64 (761)
                      ..|.+|+++|+||+||||+|.+|+..++..+ +++.|.+++        .                   ..+     .. 
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~-ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~  331 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR-IVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA  331 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE-EeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence            4689999999999999999999999998322 567777632        0                   000     00 


Q ss_pred             -------HH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccc
Q 004319           65 -------VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEH  128 (761)
Q Consensus        65 -------~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~  128 (761)
                             .+       +...+.+.+..|.++|||+.++....+...   ...+..+..+.+- -+.+...+|...|...
T Consensus       332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~---~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~  407 (475)
T PRK12337        332 EVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHP---YQAGALVVPMLVTLPDEALHRRRFELRDRE  407 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHH---HhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence                   01       225678889999999999999999876522   2333434434444 4568888899999874

>PLN02199 shikimate kinase

Probab=98.17  E-value=1.2e-05  Score=86.26  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-CC-cH------------HHHHHHHHHHHHCCCcEEEeC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-SG-TK------------VQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-~~-~~------------~~~~~~~~~~L~~g~~VIID~   85 (761)
                      ..-|+|+|.+||||||+++.|++.++  +.+|+.|.+.+.. .+ +.            .+....+...+.....+||..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg--~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VISt  179 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLG--YTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVST  179 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEEC
Confidence            34689999999999999999999999  6668888764321 11 11            112233333344444566644


Q ss_pred             ---CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           86 ---CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        86 ---tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                         .......|..+   + .|.   +|||++|.|.+.+|+..
T Consensus       180 GGG~V~~~~n~~~L---~-~G~---vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        180 GGGAVIRPINWKYM---H-KGI---SIWLDVPLEALAHRIAA  214 (303)
T ss_pred             CCcccCCHHHHHHH---h-CCe---EEEEECCHHHHHHHHhh
Confidence               23444444422   3 354   89999999999999985

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.16  E-value=1.8e-05  Score=85.32  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=75.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------------CCC------CcH-------
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GKS------GTK-------   64 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------------~~~------~~~-------   64 (761)
                      ..|.+|++.|++||||||+|.+|+..++.. .+++.|.+++                    .|.      ...       
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~  168 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF  168 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence            468999999999999999999999999854 3577877751                    110      000       


Q ss_pred             -HH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhccccc
Q 004319           65 -VQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHE  129 (761)
Q Consensus        65 -~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~  129 (761)
                       .+       ....+.+++.+|.++||+++++...+...+...   ......+++. .+.+...+|...|....
T Consensus       169 ~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~---~~~~i~~~l~i~~ee~h~~RF~~R~~~~  239 (301)
T PRK04220        169 ERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLE---NPNVFMFVLTLSDEEAHKARFYARARVS  239 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhc---CCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence             01       125667788899999999999999876654222   1223344555 45688889998888754

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.16  E-value=2.3e-06  Score=84.05  Aligned_cols=92  Identities=21%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             CCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHHHHHHHHHHCCCcEEEeC---CCCCHHH
Q 004319           29 PGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLDR---CNLEREQ   92 (761)
Q Consensus        29 PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~~~~~~~L~~g~~VIID~---tn~~~~~   92 (761)
                      |||||||+++.|++.++  +.+++.|.+.....+             ....+...+.+.+......||..   +......
T Consensus         1 ~GsGKStvg~~lA~~L~--~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~   78 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG--RPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEEN   78 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred             CCCcHHHHHHHHHHHhC--CCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence            79999999999999999  777888887422211             01122233444444444666655   5666666


Q ss_pred             HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           93 RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        93 R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |.-+.   ..+.   +|||+.+.+.+.+|+..+..+
T Consensus        79 ~~~L~---~~g~---vI~L~~~~~~l~~Rl~~~~~R  108 (158)
T PF01202_consen   79 RELLK---ENGL---VIYLDADPEELAERLRARDNR  108 (158)
T ss_dssp             HHHHH---HHSE---EEEEE--HHHHHHHHHHHCTS
T ss_pred             HHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCC
Confidence            66554   2333   899999999999999887763

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.15  E-value=1.8e-05  Score=83.30  Aligned_cols=126  Identities=21%  Similarity=0.172  Sum_probs=77.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcHH----------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTKV----------   65 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~~----------   65 (761)
                      .+|.|+|..||||||+++.|.+.+|  +.+|+.|.+..                         |.. ++.          
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G--~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~i-dR~~L~~~VF~d~   78 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHH--IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGEL-NRAELGKIIFSDA   78 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC--CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcC-CHHHHHHHHhCCH
Confidence            3789999999999999999998777  67799887721                         110 010          


Q ss_pred             ----H--------HHHHHHHHHH-------------CC-CcEEEeCCCCCHHH-HHHHHHhCCCCceEEEEEEeCCHHHH
Q 004319           66 ----Q--------CLTSASSALK-------------KG-KSVFLDRCNLEREQ-RTDFVKLGGPEVDVHAVVLDLPAKLC  118 (761)
Q Consensus        66 ----~--------~~~~~~~~L~-------------~g-~~VIID~tn~~~~~-R~~~~~l~~~~~~v~vV~Ld~p~e~~  118 (761)
                          .        ....+.+.+.             .+ ..+|+|..-+.+.. ...+.     +.   ++++.+|.++.
T Consensus        79 ~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~-----D~---iv~V~a~~e~r  150 (244)
T PTZ00451         79 QARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFV-----SA---SVVVSCSEERQ  150 (244)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcC-----Ce---EEEEECCHHHH
Confidence                0        0111112221             22 36888986554432 11121     22   78889999999


Q ss_pred             HHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319          119 ISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (761)
Q Consensus       119 ~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~  164 (761)
                      .+|+.+|..       ...+++..|+..++..-...+..|.|+..+
T Consensus       151 i~RL~~R~g-------~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~  189 (244)
T PTZ00451        151 IERLRKRNG-------FSKEEALQRIGSQMPLEEKRRLADYIIEND  189 (244)
T ss_pred             HHHHHHcCC-------CCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence            999999954       344666666655443222345566665554

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.14  E-value=2.4e-06  Score=79.38  Aligned_cols=95  Identities=22%  Similarity=0.192  Sum_probs=55.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe----c-------ccc--cCCCCCcH---HHHHHHHHHH---HHCCCcEEE
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC----Q-------DTI--NKGKSGTK---VQCLTSASSA---LKKGKSVFL   83 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~----~-------D~i--~~~~~~~~---~~~~~~~~~~---L~~g~~VII   83 (761)
                      |+|.|+|||||||+|+.|.+.++  ..+.+    .       +..  ........   ......+...   ...+..+|+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII   78 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence            78999999999999999999853  10000    0       000  01111111   1122333332   456788999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEE-EEEeCCHHHHHHHHHhcccc
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHA-VVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~v-V~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |++.....         ........ |+|++|.+++.+|+.+|...
T Consensus        79 d~~~~~~~---------~~~~~~~~~i~L~~~~e~~~~R~~~R~~~  115 (129)
T PF13238_consen   79 DGILSNLE---------LERLFDIKFIFLDCSPEELRKRLKKRGRK  115 (129)
T ss_dssp             EESSEEEC---------ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred             ecccchhc---------ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence            99544321         11122223 89999999999999999874

...

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.11  E-value=0.00011  Score=71.63  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=89.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCC--eE----EEec--cc-------cc---------CCC-CCcHHH------H
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP--WA----RICQ--DT-------IN---------KGK-SGTKVQ------C   67 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~----~I~~--D~-------i~---------~~~-~~~~~~------~   67 (761)
                      +-.+|+++||+|+||-|+.......+...  +.    +|..  |.       +.         +|. ...|..      +
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            45799999999999999988877666522  21    2222  11       10         010 012221      1


Q ss_pred             HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319           68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus        68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      -..+-..|..|..||+.+      .|.-+-+. +.+. ...+|.+.++.+++.+|+.+|.+       +..+++..|..+
T Consensus        84 p~eId~wl~~G~vvl~Ng------SRa~Lp~arrry~-~Llvv~ita~p~VLaqRL~~RGR-------Es~eeI~aRL~R  149 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNG------SRAVLPQARRRYP-QLLVVCITASPEVLAQRLAERGR-------ESREEILARLAR  149 (192)
T ss_pred             chhHHHHHhCCCEEEEec------cHhhhHHHHHhhh-cceeEEEecCHHHHHHHHHHhcc-------CCHHHHHHHHHh
Confidence            156778889999999877      34444444 3344 56788899999999999999998       456777777666


Q ss_pred             hhcCCCccCCceEEEEcCChhhHHHHHHH
Q 004319          147 KKELPKLSEGFSRITLCQNENDVQAALDT  175 (761)
Q Consensus       147 ~~e~P~~~EgFd~V~vv~~~~ei~~~l~~  175 (761)
                      .-..-  ..++ .|..+++..+++.+...
T Consensus       150 ~a~~~--~~~~-dv~~idNsG~l~~ag~~  175 (192)
T COG3709         150 AARYT--AGPG-DVTTIDNSGELEDAGER  175 (192)
T ss_pred             hcccc--cCCC-CeEEEcCCCcHHHHHHH
Confidence            43322  2233 46777777777766544

>PRK07429 phosphoribulokinase; Provisional

Probab=98.10  E-value=3.7e-05  Score=84.44  Aligned_cols=119  Identities=23%  Similarity=0.315  Sum_probs=73.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEecccccC---------CC--CCcH---HHHHHHHHHHHHCC---
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQDTINK---------GK--SGTK---VQCLTSASSALKKG---   78 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~D~i~~---------~~--~~~~---~~~~~~~~~~L~~g---   78 (761)
                      ..++.+|-|+|.+|||||||++.|...++. ....++.|.+..         +.  ..+.   ...+......++.|   
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            356889999999999999999999988763 345678877631         11  0000   11222222344433   


Q ss_pred             ---------------------CcEEEeCCC-CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCC
Q 004319           79 ---------------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGK  136 (761)
Q Consensus        79 ---------------------~~VIID~tn-~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v  136 (761)
                                           ..||+|+.. +.......+.++        .||+++|.++...|..+|....++   ..
T Consensus        85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~--------~I~Vda~~evr~~Rri~Rd~~rrG---~s  153 (327)
T PRK07429         85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDF--------KVYLDPPEEVKIAWKIKRDMAKRG---HT  153 (327)
T ss_pred             ecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCE--------EEEEECCHHHHHHHHHHHHHhhcC---CC
Confidence                                 247788854 332222334333        789999999999888877754332   34


Q ss_pred             hHHHHHHHHh
Q 004319          137 AAAVVNRMLQ  146 (761)
Q Consensus       137 ~~~vI~r~~~  146 (761)
                      .+++..++.+
T Consensus       154 ~eei~~~i~~  163 (327)
T PRK07429        154 YEQVLAEIEA  163 (327)
T ss_pred             HHHHHHHHHH
Confidence            4555555543

>PLN02772 guanylate kinase

Probab=98.09  E-value=3.4e-05  Score=85.79  Aligned_cols=139  Identities=15%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEec-----------------ccc----cCCCCCcHHH-------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQ-----------------DTI----NKGKSGTKVQ-------   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~-----------------D~i----~~~~~~~~~~-------   66 (761)
                      ...+++|+||+|+||||+.++|.+.+..    ...+..+                 +.+    .++.+..+.+       
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            4469999999999999999999886531    1111111                 111    0111111111       


Q ss_pred             -HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           67 -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        67 -~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                       -.+.+...+..|+.+|+|-   ...-++.+++.  .-..+.++++..+.+++.+|+..|...       ..+.+..|+.
T Consensus       214 Tsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RGte-------seE~I~kRL~  281 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDI---DVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARGTE-------TEEQIQKRLR  281 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcCCC-------CHHHHHHHHH
Confidence             1245677789999999986   22233333322  111233334455689999999999763       3344444443


Q ss_pred             hh-hcCCC--ccCCceEEEEcCChhhH
Q 004319          146 QK-KELPK--LSEGFSRITLCQNENDV  169 (761)
Q Consensus       146 ~~-~e~P~--~~EgFd~V~vv~~~~ei  169 (761)
                      .. .+...  ....||.+++.++.++.
T Consensus       282 ~A~~Ei~~~~~~~~fD~vIvNDdLe~A  308 (398)
T PLN02772        282 NAEAELEQGKSSGIFDHILYNDNLEEC  308 (398)
T ss_pred             HHHHHHhhccccCCCCEEEECCCHHHH
Confidence            33 12221  13458888777654433

>PRK15453 phosphoribulokinase; Provisional

Probab=98.07  E-value=4.3e-05  Score=81.59  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~   57 (761)
                      .++.+|.++|.|||||||+|+.+.+.++   .....++.|.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            3567899999999999999999987664   346788998875

>PRK05439 pantothenate kinase; Provisional

Probab=98.06  E-value=1.3e-05  Score=87.10  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccC--------------CCCCcHH-HHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------------GKSGTKV-QCLTSASSAL   75 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~--------------~~~~~~~-~~~~~~~~~L   75 (761)
                      ..+.|.+|.|.|+|||||||+|+.|...++     .....|+.|.+..              |...+.+ ..+......|
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L  161 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV  161 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence            456789999999999999999999987654     2466788887731              1111111 1122233334


Q ss_pred             HCCC---------------------------cEEEeCCCCCHHHHH-HHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           76 KKGK---------------------------SVFLDRCNLEREQRT-DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 ~~g~---------------------------~VIID~tn~~~~~R~-~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      +.|+                           .+|++|.+.-...+. .+..+ .-.++   .||+++|.+++.+|..+|.
T Consensus       162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~---~IfVda~~~~~~~w~i~R~  238 (311)
T PRK05439        162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDF---SIYVDADEDLIEKWYIERF  238 (311)
T ss_pred             HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCE---EEEEECCHHHHHHHHHHHH
Confidence            4332                           267777554322111 22222 11222   7899999999999888886


Q ss_pred             c
Q 004319          127 E  127 (761)
Q Consensus       127 ~  127 (761)
                      .
T Consensus       239 ~  239 (311)
T PRK05439        239 L  239 (311)
T ss_pred             H
Confidence            4

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=98.04  E-value=1.1e-05  Score=83.66  Aligned_cols=106  Identities=22%  Similarity=0.332  Sum_probs=77.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-ccccC------------------CCCCcHHHHHHHHHHHHHCC-
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-DTINK------------------GKSGTKVQCLTSASSALKKG-   78 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D~i~~------------------~~~~~~~~~~~~~~~~L~~g-   78 (761)
                      +..=++++|+|||||+|+|.++.+.++  ..|+.. |.+++                  +...+.+.....+...|..+ 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~--~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFG--VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcC--CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc
Confidence            456789999999999999999999988  555654 44432                  22333333444445556555 


Q ss_pred             --CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           79 --KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        79 --~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                        +.+|+|++..+..+-..+.+. ...+.   +|.|++|.+.+.+|+..|.-|+
T Consensus        92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~---Vi~l~vp~~~L~~ri~~r~ihp  142 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEELLDRIAQIDL---VINLKVPEEVLVDRITGRRIHP  142 (235)
T ss_pred             cccccccCCCCcchHHHHHHHHccCCcce---EEEecCCHHHHHHHHhcccccC
Confidence              679999999988876666555 44444   8899999999999999998764

>COG5075 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=6.9e-06  Score=83.59  Aligned_cols=114  Identities=15%  Similarity=0.206  Sum_probs=84.9

Q ss_pred             CcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeee
Q 004319          576 DDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRL  647 (761)
Q Consensus       576 ~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~  647 (761)
                      ..++|+|++    |++|.|..    -....|+++|-++..|.+++||+..|..+|.++.......+...+.-+ ....++
T Consensus       155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd-~n~l~m  233 (305)
T COG5075         155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVD-PNELRM  233 (305)
T ss_pred             ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcC-hhHeEE
Confidence            459999986    66799876    345789999998889999999999999998877655443332111111 235788


Q ss_pred             cccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHh
Q 004319          648 GYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISN  698 (761)
Q Consensus       648 G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~  698 (761)
                      -+|..||.+|||+||+.-+       +- |=++-..+-=+.++||++.|..
T Consensus       234 fvHY~PsYyhlHvHI~nIk-------h~-~g~~~a~graIlL~DVI~~Lr~  276 (305)
T COG5075         234 FVHYQPSYYHLHVHIVNIK-------HP-HGGNVACGRAILLEDVIENLRI  276 (305)
T ss_pred             EEEeccceEEEEEEEEeec-------cc-CCCCcccceeeEHHHHHHHhcc
Confidence            9999999999999999753       32 3333445778899999999966

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.02  E-value=5e-07  Score=108.30  Aligned_cols=80  Identities=13%  Similarity=0.000  Sum_probs=64.5

Q ss_pred             ccccccccccccccccccccccccccCCCCccccccccCCCCCCCC----------eeecccccccCCCCCHHHHHHHHH
Q 004319          232 TEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVP----------TLAFPSLSTSDFQFNNEKASDVII  301 (761)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------SiafPaIStg~~gfp~~~aa~i~~  301 (761)
                      .+.+++|++++|.|-|-|..+.+ .+.+..-...|+. .++...++          |||||+||||+||||.++|+.|++
T Consensus       592 ~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~-~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~  669 (725)
T PRK13341        592 PAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALL-EAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDS  669 (725)
T ss_pred             CCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHH-HHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCH
Confidence            88999999999999999976432 1223333334444 55666777          999999999999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 004319          302 EKVEEFVNKLGN  313 (761)
Q Consensus       302 ~~v~~f~~~~~~  313 (761)
                      ++|+.|+.+.++
T Consensus       670 ~~i~~~~~~~~~  681 (725)
T PRK13341        670 KLIKRWLAQGPD  681 (725)
T ss_pred             HHHHHHHhcCCc
Confidence            999999998775

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.99  E-value=7.4e-05  Score=77.86  Aligned_cols=121  Identities=21%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEE-EecccccCC--------C------C--CcHHHHHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWAR-ICQDTINKG--------K------S--GTKVQCLTSASSALK   76 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~-I~~D~i~~~--------~------~--~~~~~~~~~~~~~L~   76 (761)
                      ...+.++.|.|++|||||||++.|...+..   ...+ ++.|.+...        .      .  .+...+.+. ...+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~-l~~l~  108 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAAL-LRRLR  108 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHH-HHHHH
Confidence            457899999999999999999999877652   2223 565554211        1      1  112222222 22222


Q ss_pred             C---------------------------CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           77 K---------------------------GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        77 ~---------------------------g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .                           ...+|+|+....... ..|..+ ...+   .+|++++|.+++.+|+..|...
T Consensus       109 ~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~l~~~~D---~vi~v~~~~~~~~~R~~~R~~~  184 (229)
T PRK09270        109 AGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRRLAGLFD---FTIFLDAPAEVLRERLVARKLA  184 (229)
T ss_pred             cCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHh
Confidence            2                           223677885553211 122222 2233   3899999999999999999642


Q ss_pred             cCCCCCCChHHHHHHHHh
Q 004319          129 EGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus       129 ~~~~~~~v~~~vI~r~~~  146 (761)
                      .+    ..++++..++.+
T Consensus       185 ~g----~s~~~~~~~~~~  198 (229)
T PRK09270        185 GG----LSPEAAEAFVLR  198 (229)
T ss_pred             cC----CCHHHHHHHHHh
Confidence            11    344555555543

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.96  E-value=9.7e-06  Score=81.61  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCCcH------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSGTK------------   64 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~~~------------   64 (761)
                      +|.|+|..||||||+++.+.+ +|  +.+++.|.+..                         |.. ++            
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G--~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~i-dR~~L~~~vF~d~~   77 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LG--FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEI-DRKKLAEIVFSDPE   77 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT---EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB--HHHHHHHHTTSHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CC--CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCC-hHHHHHHHHhcCHH
Confidence            789999999999999999987 77  88899887721                         110 11            


Q ss_pred             ----------HHHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319           65 ----------VQCLTSASSALK---KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (761)
Q Consensus        65 ----------~~~~~~~~~~L~---~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~  131 (761)
                                ....+.+.+.+.   ....+|+|...+.......+     .+.   ++++.+|.++..+|+.+|.+    
T Consensus        78 ~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~-----~D~---vi~V~a~~e~ri~Rl~~R~~----  145 (180)
T PF01121_consen   78 KLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKL-----CDE---VIVVYAPEEIRIKRLMERDG----  145 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGG-----SSE---EEEEE--HHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhh-----hce---EEEEECCHHHHHHHHHhhCC----
Confidence                      001122333232   22568899977765432222     232   78889999999999999975    


Q ss_pred             CCCCChHHHHHHHHhhh
Q 004319          132 LQGGKAAAVVNRMLQKK  148 (761)
Q Consensus       132 ~~~~v~~~vI~r~~~~~  148 (761)
                         -..+.+..++..++
T Consensus       146 ---~~~~~~~~ri~~Q~  159 (180)
T PF01121_consen  146 ---LSEEEAEARIASQM  159 (180)
T ss_dssp             ---STHHHHHHHHHTS-
T ss_pred             ---CcHHHHHHHHHhCC
Confidence               23455555555543

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.93  E-value=3e-05  Score=80.50  Aligned_cols=102  Identities=12%  Similarity=0.031  Sum_probs=60.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCC--------------CCC--cHHHHHHHHHHHHHC---
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKG--------------KSG--TKVQCLTSASSALKK---   77 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~--------------~~~--~~~~~~~~~~~~L~~---   77 (761)
                      ||.|.|++||||||||+.|...+.     ....+++.|.+...              ...  +.... ......|+.   
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l-~~~L~~l~~g~~   79 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEAL-LKFLKDIKSGKK   79 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHH-HHHHHHHHCCCC
Confidence            578999999999999999988763     34567788877311              111  11111 222222332   


Q ss_pred             ------------------------CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 ------------------------GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 ------------------------g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                                              .+.+|+|+.+.-......|..+ .-.+.   .||+++|.+++.+|+..|..
T Consensus        80 ~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~---~ifvd~~~~~~~~rl~~R~~  151 (220)
T cd02025          80 NVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDF---SIYVDADEDDIEKWYIKRFL  151 (220)
T ss_pred             cEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCe---EEEEECCHHHHHHHHHHHHH
Confidence                                    2237778865543322222222 22233   78999999998888777743

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.93  E-value=3.5e-05  Score=88.97  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c-----------H-HHHHHHHHHHHHCCCcEEEeC---
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T-----------K-VQCLTSASSALKKGKSVFLDR---   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~-----------~-~~~~~~~~~~L~~g~~VIID~---   85 (761)
                      -|+|+|+|||||||+++.|++.++  +.+++.|.+.+...+ +           + .+....+.+.+.....+||..   
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg--~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg   79 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLD--LQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG   79 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC--CeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence            389999999999999999999998  667888877532221 0           0 011122222233333445533   


Q ss_pred             CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      .......|..+   ++ +   .+|||++|.+++.+|+..|
T Consensus        80 vv~~~~~r~~l---~~-~---~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         80 VVIDPENRELL---KK-E---KTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             cccChHHHHHH---hc-C---eEEEEECCHHHHHHHhccC
Confidence            13444555544   32 2   2789999999999999765

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=97.91  E-value=1e-06  Score=81.33  Aligned_cols=98  Identities=9%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             CcchhhHHHHHHHHhhCC-CCCCCCCCcccCCCCCCCccccccccccccccccccccccc--ccccCCCCccccccccCC
Q 004319          195 PDAKIQLGIMKFLKKVDA-PSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG--EEVKGTENPEVASVNQNG  271 (761)
Q Consensus       195 ~~~~~~~~i~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  271 (761)
                      ...++...+++.+++.-. ......|.+.       .|.+.++.|.+++|.|.|-|....  .....++.-++.++. ..
T Consensus        18 i~~~~g~~~~~~~~~~~~~~~~~~~G~~~-------~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~-~a   89 (118)
T PF01661_consen   18 IFKAAGPALQEECKEIKKKGGELPVGEVI-------VTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQ-KA   89 (118)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHSSSTTSEE-------EEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHH-HH
T ss_pred             HHHhchHHHHHHHHHhhcccCcccCCCee-------eecCCCccccceEEEecceeccccccccHHHHHHHHHHHHH-HH
Confidence            344556677777765521 0112224443       567888899999999988875321  233334455555555 45


Q ss_pred             CCCCCCeeecccccccCCCCCHHHHHHHH
Q 004319          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVI  300 (761)
Q Consensus       272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~  300 (761)
                      ...+++||+||+||||++|||++++++++
T Consensus        90 ~~~~~~sIa~P~ig~G~~g~~~~~~a~i~  118 (118)
T PF01661_consen   90 EENGIKSIAFPAIGTGIGGFPWDEVAEIM  118 (118)
T ss_dssp             HHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred             HHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence            56789999999999999999999999975

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=97.90  E-value=2.8e-06  Score=85.67  Aligned_cols=68  Identities=13%  Similarity=0.005  Sum_probs=47.3

Q ss_pred             cccccccccc---c-ccccccccccCCCCccccccccCCCC--CCCCeeecccccccCCCCCHHHHHHHHHHHHHHHH
Q 004319          237 SCLEGQEITS---L-LSDAAGEEVKGTENPEVASVNQNGSS--SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFV  308 (761)
Q Consensus       237 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~  308 (761)
                      .|.++.|+.+   | .+.+   +.+...+-+..++. ..+.  ..++|||||+||||++|||.++||++++.++++|+
T Consensus       113 ~~~~iIHaPtm~~P~~~~~---~~~~l~~a~~~~L~-~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~  186 (186)
T cd02900         113 GIPYLIHAPTMRVPSPVIT---GTEPVFDAMWNALN-AIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN  186 (186)
T ss_pred             CCCEEEEcCcccCCCCCCC---cHHHHHHHHHHHHH-HHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence            3999999865   3 1221   11112233334443 2222  37999999999999999999999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>PRK06761 hypothetical protein; Provisional

Probab=97.89  E-value=4.8e-05  Score=81.67  Aligned_cols=104  Identities=22%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC-----------CCcHHH---H--------HHHHHHHHHC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK-----------SGTKVQ---C--------LTSASSALKK   77 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~-----------~~~~~~---~--------~~~~~~~L~~   77 (761)
                      ..+|+++|+|||||||+++.+++.+....  ++.+.+.++.           ..+..+   .        .....+.+..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g--~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~   80 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNG--IEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKK   80 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCc--eEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence            35899999999999999999999876321  1211111111           011111   1        1244566678


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |..+|+-...+...+|..+.+.  ...  .+..++ ..|.|...+|...|..+
T Consensus        81 g~~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~rw~~  130 (282)
T PRK06761         81 GDYYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDRWND  130 (282)
T ss_pred             CCeEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHHHHH
Confidence            8889998888888888877642  111  233455 99999999999998764

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.87  E-value=0.00012  Score=77.78  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~   58 (761)
                      +|.++|.+||||||+++++.+.++   ..+..|+.|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            578999999999999999887664   4578899998854

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.87  E-value=5.9e-05  Score=81.43  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i   56 (761)
                      ...|.+|.|.|++||||||+|+.|...+.     .....++.|.+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            45789999999999999999988765442     23566777766

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.84  E-value=8.8e-05  Score=86.08  Aligned_cols=40  Identities=35%  Similarity=0.428  Sum_probs=32.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ...+.+|.|.|++|||||||++.|+..++ ....|+.|.+.
T Consensus        62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp-~vgvIsmDdy~  101 (656)
T PLN02318         62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVISMDNYN  101 (656)
T ss_pred             CCCeEEEEEECCCCCcHHHHHHHHHhhCC-CcEEEEEccee
Confidence            34578999999999999999999998874 24567777663

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.84  E-value=0.00013  Score=78.32  Aligned_cols=114  Identities=21%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCC---------CC--CcH---HHHHHHHHHHHHCC--------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKG---------KS--GTK---VQCLTSASSALKKG--------   78 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~---------~~--~~~---~~~~~~~~~~L~~g--------   78 (761)
                      +|.|+|++|||||||++.|...++ .....++.|.+..-         ..  ...   ...+......++.|        
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            578999999999999999998765 23557888766321         00  000   11112222334433        


Q ss_pred             ----------------CcEEEeCCC-CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319           79 ----------------KSVFLDRCN-LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (761)
Q Consensus        79 ----------------~~VIID~tn-~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI  141 (761)
                                      +.+|+|+.. +.......+.++        .||+++|.++.++|..+|....++   ...+++.
T Consensus        81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~--------~I~vd~~~e~r~~r~i~Rd~~rrG---~s~e~v~  149 (273)
T cd02026          81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDF--------SVYLDISDEVKFAWKIQRDMAERG---HSLEDVL  149 (273)
T ss_pred             cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccE--------EEEEECChhHHHHHHHHHHHHHhC---CCHHHHH
Confidence                            247778754 222222223222        799999999997777766643322   3445555


Q ss_pred             HHHHh
Q 004319          142 NRMLQ  146 (761)
Q Consensus       142 ~r~~~  146 (761)
                      .++..
T Consensus       150 ~~i~~  154 (273)
T cd02026         150 ASIEA  154 (273)
T ss_pred             HHHHh
Confidence            55543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.81  E-value=0.00021  Score=82.63  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      .+.+|.+.|++||||||+|+.|++.++  +.+++.|.++
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~Y  319 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMY  319 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCcee
Confidence            557899999999999999999999998  7788877764

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=97.79  E-value=9.5e-06  Score=78.23  Aligned_cols=103  Identities=13%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCccccccc-cccccccccccccccc--ccccCCCCccccccccC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNS-CLEGQEITSLLSDAAG--EEVKGTENPEVASVNQN  270 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  270 (761)
                      ......++.+++.++..........|...       .|..++++ |-++.|.+.+-+....  ...+.+.+-++.|+. .
T Consensus        35 ai~~~~g~~~~~~~~~~~~~~~~~~G~~~-------~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~-~  106 (147)
T cd02749          35 AISKKAGKELEEESKKLRKELELQVGEAV-------LTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLK-E  106 (147)
T ss_pred             HHHHHhCHHHHHHHHHHhcccCCCCCCEE-------ECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHH-H
Confidence            44556667788888877654322335553       45567787 9999999998877632  122334555566665 3


Q ss_pred             CCCCCCCeeecccccccCCCC------CHHHHHHHHHHHH
Q 004319          271 GSSSDVPTLAFPSLSTSDFQF------NNEKASDVIIEKV  304 (761)
Q Consensus       271 ~~~~~~~SiafPaIStg~~gf------p~~~aa~i~~~~v  304 (761)
                      +...+++|||||.||||++||      |++.+++++..++
T Consensus       107 ~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~  146 (147)
T cd02749         107 AEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA  146 (147)
T ss_pred             HHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence            445689999999999999999      9999999998875

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>PRK07933 thymidylate kinase; Validated

Probab=97.78  E-value=0.00048  Score=71.20  Aligned_cols=106  Identities=23%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-----c----cc----cC--CCC--Cc----------HHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----D----TI----NK--GKS--GT----------KVQCLTSA   71 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-----D----~i----~~--~~~--~~----------~~~~~~~~   71 (761)
                      +|++-|+-||||||+++.|.+.+.   ..+..+..     .    .+    ..  +..  ..          +.+..+.+
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I   81 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDEL   81 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHH
Confidence            799999999999999999998765   22222211     1    11    11  111  01          11112345


Q ss_pred             HHHHHCCCcEEEeCCCCCHHH-------------HHHHHHh-C--CCC--ceEEEEEEeCCHHHHHHHHHhccc
Q 004319           72 SSALKKGKSVFLDRCNLEREQ-------------RTDFVKL-G--GPE--VDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~~~-------------R~~~~~l-~--~~~--~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..++..|..||.|....+.-.             -..|+.. .  ..+  .+=.+|+|++|.+++.+|+.+|..
T Consensus        82 ~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~  155 (213)
T PRK07933         82 AGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA  155 (213)
T ss_pred             HHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence            667788999999995554311             1223322 1  111  234689999999999999999864

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.77  E-value=7.1e-05  Score=63.24  Aligned_cols=61  Identities=21%  Similarity=0.366  Sum_probs=42.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-   99 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-   99 (761)
                      +|+++|+|||||||+++.|.+.++ ..+.+++.                          .+|+|+......+|.  ..+ 
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~--------------------------~~I~eg~~~~~~~~~--~~~~   52 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE--------------------------IVILEGLYASYKSRD--ARIR   52 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE--------------------------EEEecchhhhhhhHH--hhcc
Confidence            478899999999999999998852 23444433                          889999777766654  222 


Q ss_pred             CCCCceEEEEEEeC
Q 004319          100 GGPEVDVHAVVLDL  113 (761)
Q Consensus       100 ~~~~~~v~vV~Ld~  113 (761)
                      ...+.   .||+++
T Consensus        53 ~~~d~---~Iyld~   63 (69)
T cd02019          53 DLADL---KIYLDA   63 (69)
T ss_pred             ccccE---EEEEEe
Confidence            33333   666665

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.76  E-value=0.00042  Score=70.75  Aligned_cols=157  Identities=18%  Similarity=0.175  Sum_probs=84.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCe--EEEecccc----cCCC--CCcHHH------HHHHHHHHHHCC-----Cc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPW--ARICQDTI----NKGK--SGTKVQ------CLTSASSALKKG-----KS   80 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~--~~I~~D~i----~~~~--~~~~~~------~~~~~~~~L~~g-----~~   80 (761)
                      ..+|++-|+-|+||||+|+.|+++++...  ..+..|-+    .+..  +..-.+      ..+...+++..+     ++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs   83 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS   83 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence            35899999999999999999999998221  11122211    1110  111111      112233333333     33


Q ss_pred             EEEeC----------CCCCHHHHHHHHHh---------CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319           81 VFLDR----------CNLEREQRTDFVKL---------GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (761)
Q Consensus        81 VIID~----------tn~~~~~R~~~~~l---------~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI  141 (761)
                      |+-|.          .++++..-.-|.++         ...+.+=.+|+|+++.++.++|+.+|++.-..........-+
T Consensus        84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~  163 (216)
T COG1428          84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYL  163 (216)
T ss_pred             hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHH
Confidence            33333          23333333333332         333455679999999999999999998753321111111233


Q ss_pred             HHH---Hhhh-----cCCCccCCceEEEEcCChhhHHHHHHHh
Q 004319          142 NRM---LQKK-----ELPKLSEGFSRITLCQNENDVQAALDTY  176 (761)
Q Consensus       142 ~r~---~~~~-----e~P~~~EgFd~V~vv~~~~ei~~~l~~~  176 (761)
                      ..+   +..|     ..|...=..+.+-++.++++.+.++...
T Consensus       164 ~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I  206 (216)
T COG1428         164 KDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQI  206 (216)
T ss_pred             HHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHH
Confidence            332   2222     1444433345666677778777776654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.76  E-value=0.00011  Score=68.36  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=44.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHH-HHHHHHHHCC--CcEEEeC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCL-TSASSALKKG--KSVFLDR   85 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~-~~~~~~L~~g--~~VIID~   85 (761)
                      |+|.|+||+||||+++.+++.++.++..++...+.........+.+ ..+.++-..+  ..++||.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe   66 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE   66 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            6899999999999999999999977777887777644444444433 3333333343  3467787

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00017 cmk cytidylate kinase

Probab=97.74  E-value=0.00041  Score=71.94  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=28.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      +.+|.|.|++||||||+++.|++.++  +.+++.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~--~~~~~~g~   35 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLG--YAYLDSGA   35 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CceeeCch
Confidence            46899999999999999999999888  44565553

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.72  E-value=0.0001  Score=75.47  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..+|-|+|.+||||||+|+.+.+ +|  +.+++.|.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G--~~vidaD~v   35 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LG--FPVIDADDV   35 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cC--CeEEEccHH
Confidence            46899999999999999999988 87  777888877

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.71  E-value=0.00023  Score=71.35  Aligned_cols=145  Identities=17%  Similarity=0.110  Sum_probs=76.9

Q ss_pred             EEcCCCCcHHHHHHHHHHHcC-CCeE-EEec--------ccc----cCCCCCcH------------HHHHHHHHHHHHCC
Q 004319           25 MVGAPGSGKSTFCEHVMRSSA-RPWA-RICQ--------DTI----NKGKSGTK------------VQCLTSASSALKKG   78 (761)
Q Consensus        25 LvG~PGSGKSTfA~~L~~~~~-~~~~-~I~~--------D~i----~~~~~~~~------------~~~~~~~~~~L~~g   78 (761)
                      +=|+.||||||+++.|.+.+. .... .+..        +.+    ......+.            ......+..++..|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            349999999999999988765 2221 2211        111    11111111            11124556788899


Q ss_pred             CcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           79 KSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        79 ~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      ..||+|...++.            .....+... -. ..+=.+|+|++|.+++.+|...|....  .......+.+.++.
T Consensus        81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~-~~PDl~~~Ldv~pe~~~~R~~~r~~~~--~~~~~~~~~~~~~~  157 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFL-PKPDLTFFLDVDPEEALKRIAKRGEKD--DEEEEDLEYLRRVR  157 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHT-TE-SEEEEEECCHHHHHHHHHHTSSTT--TTTTHHHHHHHHHH
T ss_pred             CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcC-CCCCEEEEEecCHHHHHHHHHcCCccc--hHHHHHHHHHHHHH
Confidence            999999932222            222222222 10 022348999999999999999998711  11122233344433


Q ss_pred             hhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319          146 QKKELPKLSEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      ..+..-..  .....++++...+++++..
T Consensus       158 ~~y~~l~~--~~~~~~iid~~~~~e~v~~  184 (186)
T PF02223_consen  158 EAYLELAK--DPNNWVIIDASRSIEEVHE  184 (186)
T ss_dssp             HHHHHHHH--TTTTEEEEETTS-HHHHHH
T ss_pred             HHHHHHHc--CCCCEEEEECCCCHHHHHh
Confidence            33321111  1124667777666776654

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.69  E-value=0.00012  Score=82.59  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .|.|+|.+||||||+++.|.+ +|  +.+|+.|.+
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G--~~vidaD~i   34 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LG--AVVVDADVL   34 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CC--CeEEehHHH
Confidence            589999999999999999986 77  777998877

>PRK13974 thymidylate kinase; Provisional

Probab=97.69  E-value=0.00048  Score=70.96  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=62.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEEe--c---------cccc--CCC--CCcHH-HH---------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARIC--Q---------DTIN--KGK--SGTKV-QC---------   67 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--------~~~~I~--~---------D~i~--~~~--~~~~~-~~---------   67 (761)
                      .+|++.|++||||||+++.|.+.+..        .+....  .         +.+.  .+.  ..... .+         
T Consensus         4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~   83 (212)
T PRK13974          4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH   83 (212)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence            58999999999999999999977641        111111  0         1111  111  11111 11         


Q ss_pred             H-HHHHHHHHCCCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           68 L-TSASSALKKGKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        68 ~-~~~~~~L~~g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      + ..+..++..|..||.|....+.            ++-..+..+ ...-.+-.+|+|++|.+++.+|+..|..
T Consensus        84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~d  157 (212)
T PRK13974         84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKP  157 (212)
T ss_pred             HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccc
Confidence            1 2356677888888888843332            112222222 1111244689999999999999988754

>PHA00729 NTP-binding motif containing protein

Probab=97.67  E-value=0.00021  Score=74.22  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-----cCCCCCcHHHHHHHHHHHHHCC---CcEEEeCCCCCH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----NKGKSGTKVQCLTSASSALKKG---KSVFLDRCNLER   90 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-----~~~~~~~~~~~~~~~~~~L~~g---~~VIID~tn~~~   90 (761)
                      ....|+|+|.||+||||+|.+++..++.....+..+..     ......+.......+..+....   ..+|||......
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~   95 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWL   95 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhh
Confidence            44579999999999999999999886522222222211     1112234444555555444332   346999833222


Q ss_pred             HH---H----HH---HHHh--CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           91 EQ---R----TD---FVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        91 ~~---R----~~---~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..   .    ..   +...  ....   .++++.++.+.|.+|+.+|+-
T Consensus        96 ~~~~wh~~~~~~yf~L~~aLrSR~~---l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         96 SKYVWYEDYMKTFYKIYALIRTRVS---AVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             cccchhhhccchHHHHHHHHHhhCc---EEEEecCCHHHHHHHHHhCCC
Confidence            11   1    11   2222  2222   277788899999999999864

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.59  E-value=0.00035  Score=67.14  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEE-E--------------------eccccc----CCCCCc--------HHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWAR-I--------------------CQDTIN----KGKSGT--------KVQCL   68 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I--------------------~~D~i~----~~~~~~--------~~~~~   68 (761)
                      +|+|+|++||||||+++.|++.+...+.. +                    +.+.+.    .+.+..        .....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            47899999999999999999875422111 1                    111110    010000        00112


Q ss_pred             HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC
Q 004319           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP  114 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p  114 (761)
                      ..+.+.+..|+.+|+|.      ++.....++.......+|++.+|
T Consensus        81 ~~i~~~~~~g~~~il~~------~~~~~~~l~~~~~~~~~I~i~~~  120 (137)
T cd00071          81 AAVEEALAEGKIVILEI------DVQGARQVKKSYPDAVSIFILPP  120 (137)
T ss_pred             HHHHHHHhCCCeEEEEe------cHHHHHHHHHcCCCeEEEEEECC
Confidence            45667788999999998      45555444334567788888888

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02165 adenylate isopentenyltransferase

Probab=97.58  E-value=0.00049  Score=75.40  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc--cCC---------------C-----------C--CcHHH--
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--NKG---------------K-----------S--GTKVQ--   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i--~~~---------------~-----------~--~~~~~--   66 (761)
                      +..+|+|+|++||||||+|..|++.++  ..+|+.|.+  +++               .           .  .+...  
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~--~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFP--SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcC--CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            344899999999999999999999987  456777765  010               0           0  01111  


Q ss_pred             --HHHHHHHHHHCCCcEEE-eCCCCCHHHHHH-H-------HH-----h-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           67 --CLTSASSALKKGKSVFL-DRCNLEREQRTD-F-------VK-----L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        67 --~~~~~~~~L~~g~~VII-D~tn~~~~~R~~-~-------~~-----l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                        ....+......|+..|+ =+|+++-..... +       ..     + ....+.+.+++|+.+.+++.+|+.+|-..
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~  198 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDE  198 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence              12344455566766555 445544322111 0       00     1 00224556788999999999999999763

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.53  E-value=0.0026  Score=65.58  Aligned_cols=109  Identities=25%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe--cc-----cc----cCC--CCCcH----------HH-HHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC--QD-----TI----NKG--KSGTK----------VQ-CLTSAS   72 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~--~D-----~i----~~~--~~~~~----------~~-~~~~~~   72 (761)
                      ..+|++=|+=||||||.++.|.+.+..   .+...-  .+     .+    .++  .....          .+ ....+.
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~   82 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIK   82 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999877652   121111  11     11    122  12211          11 224556


Q ss_pred             HHHHCCCcEEEeCCCCCHH------------HHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           73 SALKKGKSVFLDRCNLERE------------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        73 ~~L~~g~~VIID~tn~~~~------------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .++..|..||.|....+--            ....+.+. ...-.+-.+++||+|.+++.+|..+|...
T Consensus        83 pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~  151 (208)
T COG0125          83 PALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL  151 (208)
T ss_pred             HhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            6788899999999554432            22222222 21002346899999999999999999764

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=97.53  E-value=0.00072  Score=71.06  Aligned_cols=110  Identities=19%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccC----------------------------CCCCc------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINK----------------------------GKSGT------   63 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~----------------------------~~~~~------   63 (761)
                      ...+|++-|+-|||||+||+.|+++++ ..+..+..|.+.-                            ....+      
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            457999999999999999999999998 3334345555520                            00000      


Q ss_pred             -------HHHHHHHHHHHHHCCCcEEEeCCCCCH---------------HHHHHHHHhC-----CCCceEEEEEEeCCHH
Q 004319           64 -------KVQCLTSASSALKKGKSVFLDRCNLER---------------EQRTDFVKLG-----GPEVDVHAVVLDLPAK  116 (761)
Q Consensus        64 -------~~~~~~~~~~~L~~g~~VIID~tn~~~---------------~~R~~~~~l~-----~~~~~v~vV~Ld~p~e  116 (761)
                             ..+.+.++.-.|..|+.||++.+.++.               ..+.-+-.++     +.=-+..+||||+|..
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~  229 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVN  229 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcH
Confidence                   122346677778899999999977664               1122222221     1111346899999999


Q ss_pred             HHHHHHHhcccc
Q 004319          117 LCISRSVKRIEH  128 (761)
Q Consensus       117 ~~~~R~~~R~~~  128 (761)
                      .|++|+.+|+..
T Consensus       230 ~v~~~Ik~rg~~  241 (393)
T KOG3877|consen  230 KVLENIKRRGNT  241 (393)
T ss_pred             HHHHHHHhcCCC
Confidence            999999999864

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.50  E-value=0.0014  Score=70.16  Aligned_cols=98  Identities=26%  Similarity=0.335  Sum_probs=63.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCCCCCH-HHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLER-EQR   93 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~tn~~~-~~R   93 (761)
                      .+|+++|++||||||-.+.| +.+|  |  .|-|.+-      - .++....+.+.      .+-.++||.-+... ...
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~G--y--~cvDNlP------~-~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~   69 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLG--Y--YCVDNLP------P-SLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL   69 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcC--e--eEEcCCc------H-HHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence            47999999999999987766 5666  4  5556651      1 12222222222      11237889865543 222


Q ss_pred             HHHHH-hCCCCceEEEEEEeCCHHHHHHHHH-hcccccC
Q 004319           94 TDFVK-LGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEG  130 (761)
Q Consensus        94 ~~~~~-l~~~~~~v~vV~Ld~p~e~~~~R~~-~R~~~~~  130 (761)
                      ...+. +++.+..+.++||+++.+++.+|-. .|..|+-
T Consensus        70 ~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL  108 (284)
T PF03668_consen   70 FEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL  108 (284)
T ss_pred             HHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC
Confidence            23333 3556899999999999999999975 5666653

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=97.49  E-value=1.6e-05  Score=75.14  Aligned_cols=69  Identities=9%  Similarity=0.052  Sum_probs=51.6

Q ss_pred             Cccccccccccccccccccccccc-ccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHH
Q 004319          230 QITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDV  299 (761)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i  299 (761)
                      -+.+.++.|.+++|.+++-|..+. .....+++.++.|+. .....+++|||||+|+||++|||+++++++
T Consensus        63 ~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~-~~~~~~~~sIa~P~igtG~~g~~~~~~~~~  132 (133)
T smart00506       63 VTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLE-LAIELGITSVAIPLIGTGIYGVPKDRSAQA  132 (133)
T ss_pred             EecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHH-HHHHcCCCEEEECCccCCCCCCCHHHHHhh
Confidence            355667889999999998887531 222334455555554 344578999999999999999999999986

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.48  E-value=0.0011  Score=72.43  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++.+|+|+||+||||||+|..|++.++  ..+|+.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~--~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLN--GEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCC--CcEEecccc
Confidence            457999999999999999999999987  556887774

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.38  E-value=0.0011  Score=64.53  Aligned_cols=115  Identities=20%  Similarity=0.249  Sum_probs=81.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----------C-----------CC------CcH---
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----------G-----------KS------GTK---   64 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----------~-----------~~------~~~---   64 (761)
                      ...+-.||+|-|.|-||||++|+++..-+..+|.+|..|.+.+           +           ..      ++.   
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            3445579999999999999999999988888899988776621           1           00      000   


Q ss_pred             --HHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCC
Q 004319           65 --VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGN  131 (761)
Q Consensus        65 --~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~  131 (761)
                        ......+...+..|-++|.|...-++.+.-+..+. -.++.+++|-+.+|.|+..+|-..|.++.++
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~-l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG  166 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV-LEGCRVWMVGVHVPDEEGARRELRRGDRHPG  166 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH-HhCCceEEEEeeccHHHHHHHHhhcCCcCcc
Confidence              01113455566788999999977775554444433 3567788888999999999988778775543

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.36  E-value=0.0011  Score=69.25  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|.+.|++||||||+|+.|++.++  +.+++.+.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~--~~~~~~~~~   38 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG--FHYLDTGAM   38 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CCcccCchh
Confidence            47899999999999999999999998  555666553

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.0018  Score=72.45  Aligned_cols=153  Identities=19%  Similarity=0.280  Sum_probs=99.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFV   97 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~~   97 (761)
                      +.+|++-+..-||||||.|+-|.+-++  |.++..|.+ .|.-++.. ..+.+....+.|-. |++|..|....+|..+.
T Consensus       373 e~tll~pia~igcgktt~ak~l~~lf~--w~~vqnd~l-sgk~~~k~-~~kai~~~~r~~~~~v~~drnnh~~~~r~~lq  448 (758)
T COG5324         373 EFTLLVPIATIGCGKTTVAKILEKLFG--WPVVQNDNL-SGKGGPKR-FAKAIIEEFRNGHSVVFADRNNHISNMRSTLQ  448 (758)
T ss_pred             eeEEEEEEEEeccCcccHHHHHHHHcC--CcccccCCC-CCCCchhH-HHHHHHHHhccCceEEEEcccchhhhhhhhhh
Confidence            457999999999999999999999998  989999998 44434332 23555556666655 67788888888887665


Q ss_pred             Hh---CCCCceEEEEEEe-CC--HHHHHHHHHhcccccCCCCCC----ChHHHHHHHHhhhcCCCc----cCCceEEEEc
Q 004319           98 KL---GGPEVDVHAVVLD-LP--AKLCISRSVKRIEHEGNLQGG----KAAAVVNRMLQKKELPKL----SEGFSRITLC  163 (761)
Q Consensus        98 ~l---~~~~~~v~vV~Ld-~p--~e~~~~R~~~R~~~~~~~~~~----v~~~vI~r~~~~~e~P~~----~EgFd~V~vv  163 (761)
                      .-   -..++.+..+-++ +|  +|....|+.+|+++....--+    ....+.+-+++++.+-.+    +..||.++.+
T Consensus       449 ~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f~k~ykp~~~~~~~d~~~d~~iel  528 (758)
T COG5324         449 TDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTFYKQYKPFDAGNKHDANYDDIIEL  528 (758)
T ss_pred             cceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHHHHhcCCCCCCCCccccccceeec
Confidence            42   2334444444333 33  477899999998764432111    123344455666655433    5568888888


Q ss_pred             CC-hhhHHHHHHH
Q 004319          164 QN-ENDVQAALDT  175 (761)
Q Consensus       164 ~~-~~ei~~~l~~  175 (761)
                      +. ....+++...
T Consensus       529 d~~~~sl~nar~i  541 (758)
T COG5324         529 DPLIGSLENARRI  541 (758)
T ss_pred             ccccchhhhHHHH
Confidence            75 3455555443

>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=97.28  E-value=0.0011  Score=72.26  Aligned_cols=131  Identities=14%  Similarity=0.226  Sum_probs=85.0

Q ss_pred             hhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceee
Q 004319          566 RTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAF  645 (761)
Q Consensus       566 ~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~  645 (761)
                      +|+..-......+|+++|.+++|.--++.-+++++++|| +|+..+.+++++++.-|..+.........+...  ...-+
T Consensus       191 ~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk-~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~--~~fpY  267 (338)
T COG1085         191 DLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPK-EHVSFLTDLSDEELKDLAEILKKLLARYDNLFG--NSFPY  267 (338)
T ss_pred             HHHHHHhccCceEEecCceeEEeccccccCceEEEeccH-HHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccC--CCCce
Confidence            333333334456999999999999999999999999999 799999999998876555544433322222211  12248


Q ss_pred             eecccCCC-c----ccceeeeeecCCccc-ccccccccccccC--cccccCHHHHHHHHHhc
Q 004319          646 RLGYHSAP-S----MRQLHLHVISQDFNS-KHLKNKKHWNSFN--TAFFCDSVDVLEEISNH  699 (761)
Q Consensus       646 ~~G~ha~p-S----v~HLHlHVIs~d~~s-~~lk~kkH~nsF~--t~fFv~~~~v~~~l~~~  699 (761)
                      ++|||..| .    -.|+|+|+..+-..+ ..+|.-.-+-.++  .-++++.+++-++|++.
T Consensus       268 ~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~~~~~pEeaA~~LR~~  329 (338)
T COG1085         268 SMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFIRDVTPEEAAERLRER  329 (338)
T ss_pred             eeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceeeccCCHHHHHHHHHHh
Confidence            99999998 2    478888888853332 1121212222223  23566777877777553

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.012  Score=60.37  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      .+|.+-||.||||||+|+.|+++++  |.+++...
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg--~~yldTGa   37 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG--FHYLDTGA   37 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC--CCeecccH
Confidence            6899999999999999999999999  66677533

>PLN02748 tRNA dimethylallyltransferase

Probab=97.21  E-value=0.0023  Score=73.42  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..+++.+|+|+|++||||||+|..|+..++  ..+|+.|..
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~--~eii~~Dsm   56 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP--VEIINADSM   56 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcC--eeEEcCchh
Confidence            344567999999999999999999999988  677888853

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.20  E-value=0.0013  Score=69.76  Aligned_cols=110  Identities=17%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEEecccc--------------cCCCCCcHHH-HHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTI--------------NKGKSGTKVQ-CLTSASSAL   75 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I~~D~i--------------~~~~~~~~~~-~~~~~~~~L   75 (761)
                      ....|.+|.++|+||+||||+|+.|...+.+     ....+-.|-+              ++|-..+.+. .+......+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v  157 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV  157 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence            4557899999999999999999998876541     1233444433              2333333221 111222233


Q ss_pred             HCC---------------------------CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           76 KKG---------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        76 ~~g---------------------------~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +.|                           +-+|++|.|+-... ..|..+ .-+++   .||+|++.+.+.+|+.+|--
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~-~p~~~~sdffDf---SIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDG-EPWLFLSDFFDF---SIYVDADEELLEERYIERFL  233 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCC-CccccccccceE---EEEecCCHHHHHHHHHHHHH
Confidence            322                           23788885554433 255544 33444   78999999999999999975


Q ss_pred             cc
Q 004319          128 HE  129 (761)
Q Consensus       128 ~~  129 (761)
                      ..
T Consensus       234 ~~  235 (283)
T COG1072         234 KF  235 (283)
T ss_pred             hc
Confidence            43

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=97.18  E-value=7.1e-05  Score=71.90  Aligned_cols=74  Identities=7%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             cccccccccccccccccccccccccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319          231 ITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (761)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~  305 (761)
                      +.+.++.+-++.|.+++.++-.......++.-++.+++ .....++.|||||+|++|++|||++++++++.+...
T Consensus        65 ~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~-~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~  138 (140)
T cd02901          65 ERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRA-HARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA  138 (140)
T ss_pred             ecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHH-HHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence            44566678889999888765322222223333333333 333468999999999999999999999999877654

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.17  E-value=0.00042  Score=69.16  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      +++++|+|||||||||..++..++.++.++..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            68999999999999999999987755656654

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.17  E-value=0.0035  Score=61.88  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      +.+++++|.||+||||+.+...+.+ ..+..+|.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivNy   36 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVNY   36 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH-hhceeeeH
Confidence            5789999999999999999988877 22455664

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.15  E-value=0.0011  Score=73.39  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~   72 (761)
                      -..|.++.|.||||+|||.+|+.++++++..+..++..++..++.++.+..++.+.
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F  200 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRY  200 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHH
Confidence            35688999999999999999999999999888899999999999988776654433

>PRK13976 thymidylate kinase; Provisional

Probab=97.12  E-value=0.0045  Score=63.90  Aligned_cols=104  Identities=20%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCC----eEEEec--------cccc----C-CCCCcHHH----------H-HHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARP----WARICQ--------DTIN----K-GKSGTKVQ----------C-LTSASS   73 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~----~~~I~~--------D~i~----~-~~~~~~~~----------~-~~~~~~   73 (761)
                      +|++-|+-||||||+++.|.+.+...    -+++..        ..++    . .......+          . .+.+..
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p   81 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILP   81 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999998776421    111211        1111    1 11111111          1 134667


Q ss_pred             HHHCCCcEEEeCCCCCHHHHH--------HHHH-h-C--CCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           74 ALKKGKSVFLDRCNLEREQRT--------DFVK-L-G--GPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        74 ~L~~g~~VIID~tn~~~~~R~--------~~~~-l-~--~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      +|..|..||.|...++--..+        .|+. + .  ....+=.+|+|++|.+++.+|..+|
T Consensus        82 ~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         82 ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            788999999999655532111        1222 2 1  1112346899999999999998644

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.10  E-value=0.0027  Score=65.17  Aligned_cols=128  Identities=15%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------------------CCCCCcHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------------------KGKSGTKVQCLT   69 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------------------~~~~~~~~~~~~   69 (761)
                      .|++++||+|+|||.+|-.|+++++  +.+|+.|.+.                               +|.. +..+..+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g--~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i-~a~ea~~   78 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTG--APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGII-NAEEAHE   78 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhC--CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCc-CHHHHHH
Confidence            3789999999999999999999999  6677776651                               1111 1222222


Q ss_pred             HHHH---HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319           70 SASS---ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (761)
Q Consensus        70 ~~~~---~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~r~  144 (761)
                      .+..   .+..++.+|+++-..+.-.+- ..+. -..++.+++..+.++. +.-..|..+|-...- ..+......+...
T Consensus        79 ~Li~~v~~~~~~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML-~p~~~~~Sll~EL  156 (233)
T PF01745_consen   79 RLISEVNSYSAHGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQML-RPDSSGPSLLEEL  156 (233)
T ss_dssp             HHHHHHHTTTTSSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHH-S--SSS--HHHHH
T ss_pred             HHHHHHHhccccCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhc-CCCCCCCcHHHHH
Confidence            2222   233477899999666543332 2223 3467888999998876 555667777754321 1123335677777


Q ss_pred             HhhhcCCCc
Q 004319          145 LQKKELPKL  153 (761)
Q Consensus       145 ~~~~e~P~~  153 (761)
                      ...|..|..
T Consensus       157 ~~lW~~p~~  165 (233)
T PF01745_consen  157 VALWNDPAL  165 (233)
T ss_dssp             HHHHTSTTH
T ss_pred             HHHHhCccc
Confidence            777776664

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.0031  Score=63.86  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=31.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      -.||-|.|.+.|||||+|+.|.+-++ ....|++|+++
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~-~~~lIhqDDFy   40 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFP-GCSLIHQDDFY   40 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHcc-CCeeecccccc
Confidence            35788999999999999999998877 35689999985

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.08  E-value=0.0015  Score=59.89  Aligned_cols=36  Identities=33%  Similarity=0.579  Sum_probs=29.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCC---eEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARP---WARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~---~~~I~~D~i   56 (761)
                      ..++|+|+|||||||+++.++..+...   ...++.+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            478999999999999999999988753   556665543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.05  E-value=0.0042  Score=62.92  Aligned_cols=96  Identities=23%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------------CCCC-------------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------------GKSG-------------   62 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------------~~~~-------------   62 (761)
                      .+|-|+|..||||||+++.+. .+|  +.+|+.|.+..                         |...             
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~   78 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALG--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK   78 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcC--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence            368899999999999998876 777  66788877721                         1100             


Q ss_pred             --------c----HHHHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           63 --------T----KVQCLTSASSALKKGKS-VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        63 --------~----~~~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                              +    +.+.++.+...+-.|.. +|+|..-+-......|        -.+.|++-|+.++..+|+.+|+.
T Consensus        79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~--------~~~tvvV~cd~~~Ql~Rl~~Rd~  148 (225)
T KOG3220|consen   79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKI--------CHKTVVVTCDEELQLERLVERDE  148 (225)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhh--------eeeEEEEEECcHHHHHHHHHhcc
Confidence                    0    11123444555556654 6778855544422223        12367778999999999999984

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.0027  Score=66.40  Aligned_cols=108  Identities=20%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------------------CC-------------C
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------------------GK-------------S   61 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------------------~~-------------~   61 (761)
                      .+...|.+|+|=|+||.||||+|..++.+++... .|+.|.+++                    .|             .
T Consensus        84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia  162 (299)
T COG2074          84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA  162 (299)
T ss_pred             hccCCCeEEEecCCCCCChhHHHHHHHHHcCCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence            3556789999999999999999999999999543 478887742                    00             0


Q ss_pred             CcHHH-------HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEE-EeCCHHHHHHHHHhccc
Q 004319           62 GTKVQ-------CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVV-LDLPAKLCISRSVKRIE  127 (761)
Q Consensus        62 ~~~~~-------~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~-Ld~p~e~~~~R~~~R~~  127 (761)
                      +-.++       .-..+.+++..|.++||++.++-+...+.-.   . +.++..++ .-.+.++..+|...|..
T Consensus       163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~---~-~~n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEA---L-GNNVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhh---h-ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence            00111       1156688999999999999888775533321   1 22233333 44567888889998875

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.001  Score=71.88  Aligned_cols=106  Identities=20%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCC-------cHHHHHH----HHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSG-------TKVQCLT----SASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~-------~~~~~~~----~~~~~L~~g~~VIID   84 (761)
                      .-+-|++.|++|+||||+.-+|.+-   +++++--++.|.|+.|...       ++++.++    .+.-....|-.+|..
T Consensus        49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcits  128 (627)
T KOG4238|consen   49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITS  128 (627)
T ss_pred             cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeeh
Confidence            4467899999999999988877654   4577777888999765421       2333222    222233455555655


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      ......++|...+++ ...++++.-|++++|.++|.+|-.+
T Consensus       129 fispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k  169 (627)
T KOG4238|consen  129 FISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVK  169 (627)
T ss_pred             hcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChH
Confidence            566666889999999 8889999999999999999988654

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.005  Score=66.64  Aligned_cols=108  Identities=20%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCC----------------------C-----CcH----H
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------S-----GTK----V   65 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~----------------------~-----~~~----~   65 (761)
                      +-.||+++|+.|||||-+|-.|+.+++  ..+|+.|.+.  +|.                      .     .+.    .
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~--~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFP--GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCC--ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence            557999999999999999999999988  6678877661  111                      0     011    1


Q ss_pred             HHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHH-----HH--------h-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           66 QCLTSASSALKKGKS-VFLDRCNLEREQRTDF-----VK--------L-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        66 ~~~~~~~~~L~~g~~-VIID~tn~~~~~R~~~-----~~--------l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .+...+....++|+. +|+=++|++-...-.-     .+        + ....+..++++++++..++.+|+.+|-+.
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~  161 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDD  161 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence            123455666677766 6666677765332110     00        1 12236688999999999999999999863

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.97  E-value=0.0025  Score=65.15  Aligned_cols=39  Identities=26%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~   58 (761)
                      |.+|+|+||+|+||||.+.+|+..+   +.....++.|.+|-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            6899999999999999999987654   46677889988863

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK09087 hypothetical protein; Validated

Probab=96.95  E-value=0.0052  Score=64.15  Aligned_cols=120  Identities=17%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc------------------cccCCCCCcHHHHHHHHHHHHHCCCcEEE
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD------------------TINKGKSGTKVQCLTSASSALKKGKSVFL   83 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D------------------~i~~~~~~~~~~~~~~~~~~L~~g~~VII   83 (761)
                      .++|+|++|||||++++.+.+..+  ..+++.+                  ++.. ...+...++..+......|+.+|+
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~l~iDDi~~-~~~~~~~lf~l~n~~~~~g~~ili  122 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSD--ALLIHPNEIGSDAANAAAEGPVLIEDIDA-GGFDETGLFHLINSVRQAGTSLLM  122 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcC--CEEecHHHcchHHHHhhhcCeEEEECCCC-CCCCHHHHHHHHHHHHhCCCeEEE
Confidence            589999999999999999987766  3344432                  2211 112334455555566666788887


Q ss_pred             eCCCCCHHHHHHHHHh---CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           84 DRCNLEREQRTDFVKL---GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l---~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                      -++..........-++   -..+.   ++.+..|.+..+..+.+|.-...  ...++++++.-+.+++.
T Consensus       123 ts~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~~~~~~~--~~~l~~ev~~~La~~~~  186 (226)
T PRK09087        123 TSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIFKLFADR--QLYVDPHVVYYLVSRME  186 (226)
T ss_pred             ECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhh
Confidence            6643222221111111   12233   56666666544444444332211  12567777777766554

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.86  E-value=0.0025  Score=66.07  Aligned_cols=72  Identities=18%  Similarity=0.311  Sum_probs=44.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVK   98 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~   98 (761)
                      .-+++.||||.||||+|+-++..++..+..++...+.+    . ... ..+...++.+..++||-.+.-....++++-
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k----~-~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~Ll  122 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK----A-GDL-AAILTNLKEGDILFIDEIHRLNKAQQEILL  122 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----C-HHH-HHHHHT--TT-EEEECTCCC--HHHHHHHH
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----H-HHH-HHHHHhcCCCcEEEEechhhccHHHHHHHH
Confidence            35899999999999999999999997777676644421    1 111 233345677778889987776655555443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.86  E-value=0.0065  Score=69.38  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ..|.+|+|+|++|+||||++.+|+..+   +.....++.|.++
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R  135 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR  135 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence            468999999999999999999988655   3456678888764

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=96.85  E-value=0.0051  Score=64.63  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=62.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC---CCcEEEeCCCCCH-HHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK---GKSVFLDRCNLER-EQRTDF   96 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~---g~~VIID~tn~~~-~~R~~~   96 (761)
                      .+|++.|.+|||||+-.+.| +.+|  |  .|-|.+--..   ..++...+. ....   .-.|++|--+..- ..-..+
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlG--y--ycvDNLPp~L---lp~~~~~~~-~~~~~~~kvAv~iDiRs~~~~~~l~~~   72 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLG--Y--YCVDNLPPQL---LPKLADLML-TLESRITKVAVVIDVRSREFFGDLEEV   72 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcC--e--eeecCCCHHH---HHHHHHHHh-hcccCCceEEEEEecccchhHHHHHHH
Confidence            47999999999998876665 5666  4  6666662111   111222111 1111   1238899866632 334445


Q ss_pred             HHh-CCC-CceEEEEEEeCCHHHHHHHHH-hccccc
Q 004319           97 VKL-GGP-EVDVHAVVLDLPAKLCISRSV-KRIEHE  129 (761)
Q Consensus        97 ~~l-~~~-~~~v~vV~Ld~p~e~~~~R~~-~R~~~~  129 (761)
                      +.. +.. ++.+.++||+++.+++.+|-. .|..|+
T Consensus        73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HP  108 (286)
T COG1660          73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHP  108 (286)
T ss_pred             HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCC
Confidence            554 544 467899999999999999985 555554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.85  E-value=0.011  Score=67.31  Aligned_cols=40  Identities=33%  Similarity=0.480  Sum_probs=33.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ..|.+|+|+|++||||||++.+|+..+   +.....++.|.++
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            458999999999999999999998655   4567778888875

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism

Probab=96.84  E-value=0.0068  Score=60.35  Aligned_cols=93  Identities=16%  Similarity=0.302  Sum_probs=51.6

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc-
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS-  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS-  654 (761)
                      ..+|+++|.+++|.--+...|+-++|+|| +|..++.++++++..-|..+...........+.  ...-+.+|.|..|. 
T Consensus        29 ~Riv~en~~f~a~vP~~a~wP~ev~ilpk-rh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~--~~~pY~m~ihqaP~~  105 (166)
T PF02744_consen   29 ERIVYENEHFVAFVPFAARWPFEVWILPK-RHVPSLADLTDEERDDLAAILKPILRRYDNLFE--TSFPYNMGIHQAPVN  105 (166)
T ss_dssp             TTEEEE-SSEEEE--TT--STT-EEEEES-S--SSGGG--HHHHHHHHHHHHHHHHHHHHHCT--S---EEEEEE---SS
T ss_pred             CEEEEECCceEEEEECcccCCcEEEEecC-CChhhHHHhhhHHHhhHHHHHHHHHHHhcccCC--CCCCCchhhhcCCCC
Confidence            46999999999999999999999999999 899999999998766555554443333333332  12348999999881 


Q ss_pred             ----ccceeeeeecCCccccc
Q 004319          655 ----MRQLHLHVISQDFNSKH  671 (761)
Q Consensus       655 ----v~HLHlHVIs~d~~s~~  671 (761)
                          -.++|+|+-..-..+.-
T Consensus       106 ~~~~~~~fH~H~e~~~ir~~~  126 (166)
T PF02744_consen  106 GEDPEHWFHPHFEPPHIRSEN  126 (166)
T ss_dssp             SS--TT--EEEEE--BESSTT
T ss_pred             cccchhhhhcccccccccccc
Confidence                12377776554444444

The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.79  E-value=0.0054  Score=56.88  Aligned_cols=38  Identities=18%  Similarity=0.456  Sum_probs=28.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ....+++.|+||+||||+++.+...+   +..+..++....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence            34578999999999999999999887   444555554443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.79  E-value=0.0099  Score=66.69  Aligned_cols=41  Identities=27%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ...|.+|+|+|+-||||||.|-+|+..+   +...-.++.|.+|
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R  140 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR  140 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence            5578999999999999999998887544   4666778888885

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=96.77  E-value=0.02  Score=69.08  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ..+|.+.||+||||||+|+.|++.++  +.+++.+.++
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~--~~~~~~~~~~  477 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALG--YHYLDSGALY  477 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhC--CeEecHHHhh
Confidence            34788999999999999999999999  6678877663

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.75  E-value=0.0083  Score=70.64  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      ..+++.+++|+||||-||||+|.-+++..|..++.||.
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA  359 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA  359 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence            55677899999999999999999999999977777775

>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues

Probab=96.74  E-value=0.015  Score=54.83  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             CCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecc
Q 004319          570 YPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGY  649 (761)
Q Consensus       570 ~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~  649 (761)
                      +|.--...||.-.+++.+-...-|..++|+||||- .|..++..++++....|+...+..++..++.  ..+..+|-.. 
T Consensus        19 n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi-~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~--~~~vvf~E~~-   94 (121)
T PF04677_consen   19 NPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPI-QHVPSLTELDEEVWEEIRNFQKSLRKMFASQ--GKDVVFFERV-   94 (121)
T ss_pred             CCCccceEEEEEcCcEEEEeCCCCccCCEEEEEec-ceecccccCCHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEEe-
Confidence            34422345778888888888889999999999999 8999999999998888888777666665443  1222334433 


Q ss_pred             cCCCcccceeeeeecCCcc
Q 004319          650 HSAPSMRQLHLHVISQDFN  668 (761)
Q Consensus       650 ha~pSv~HLHlHVIs~d~~  668 (761)
                        .....|+||++|.-+..
T Consensus        95 --~~~~~H~~iq~vPvp~~  111 (121)
T PF04677_consen   95 --RKRNPHTHIQCVPVPKE  111 (121)
T ss_pred             --CCCCcEEEEEEEEcCHH
Confidence              55789999999987654

Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.014  Score=63.12  Aligned_cols=25  Identities=28%  Similarity=0.790  Sum_probs=23.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .||+|.||||.||||+|++|++++.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhhe
Confidence            5899999999999999999999975

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.66  E-value=0.0041  Score=72.00  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=43.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~   72 (761)
                      ..|.=|+|.|+||+|||.+|+.++..++.++..++...+..++.+..+..+..+.
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f  311 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMI  311 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHH
Confidence            3466799999999999999999999999888788877777777666555444333

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.65  E-value=0.0071  Score=73.44  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +|.|.|+|||||||+|+.|++.++  |.+++...+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~--~~~~~~g~~   35 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLG--YAYLDTGAM   35 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeecCcE
Confidence            689999999999999999999998  666776555

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.65  E-value=0.015  Score=60.21  Aligned_cols=130  Identities=15%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeE-EEecccc--c----------------------CCCCCcHHH--------H
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTI--N----------------------KGKSGTKVQ--------C   67 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~-~I~~D~i--~----------------------~~~~~~~~~--------~   67 (761)
                      .-++|+|++|.||+|+..+|.+.++..+- .++.+.-  +                      ++....+..        .
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts  117 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS  117 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence            67999999999999999999999873111 1221110  0                      111111111        1


Q ss_pred             HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319           68 LTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus        68 ~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      ...+++....|+..|+|-      ..+....++......+.+++. ++..++.+|+.+|..       +..++.+.++..
T Consensus       118 i~av~~~~~~gk~~ildI------d~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt-------e~~~~l~~r~~s  184 (231)
T KOG0707|consen  118 IAAVQRLMLSGKVCILDI------DLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGT-------ETEESLLKRLKS  184 (231)
T ss_pred             HHHHHHHHhcCCcceeeh------hhcCceeeecCCCceEEEEecCCcchhHHHHhhccCc-------chHHHHHHHHHh
Confidence            145556667788888877      222222224445566677776 556889999999955       566777777773


Q ss_pred             hhcCCCccC---CceEEEEc
Q 004319          147 KKELPKLSE---GFSRITLC  163 (761)
Q Consensus       147 ~~e~P~~~E---gFd~V~vv  163 (761)
                      ..++-...|   .|+.+++-
T Consensus       185 a~~e~~~~~~~g~~d~~~~n  204 (231)
T KOG0707|consen  185 AEEEFEILENSGSFDLVIVN  204 (231)
T ss_pred             hhhhhccccCCccccceecC
Confidence            333222333   38887776

>PRK10867 signal recognition particle protein; Provisional

Probab=96.64  E-value=0.018  Score=65.69  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~   57 (761)
                      ...|.+|+++|++||||||++.+|+..+    +.....++.|.++
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R  141 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR  141 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence            3468999999999999999888877543    5567788988774

>PF13173 AAA_14: AAA domain

Probab=96.64  E-value=0.0051  Score=58.03  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHHHHH-CCCcEEEeCCCCCHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALK-KGKSVFLDRCNLEREQRTDFV   97 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~-~g~~VIID~tn~~~~~R~~~~   97 (761)
                      .+++|.|+.|+||||+++++++.+.  ..+..++.|+.......... ..+.+.+... ....++||-...-..+...+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk   81 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALK   81 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence            4799999999999999999998765  55667777766432111111 2222233222 345689999766665555444


Q ss_pred             HhCCCCceEEEEEEeCCHHHH
Q 004319           98 KLGGPEVDVHAVVLDLPAKLC  118 (761)
Q Consensus        98 ~l~~~~~~v~vV~Ld~p~e~~  118 (761)
                      .+.+.+... -|++..+....
T Consensus        82 ~l~d~~~~~-~ii~tgS~~~~  101 (128)
T PF13173_consen   82 FLVDNGPNI-KIILTGSSSSL  101 (128)
T ss_pred             HHHHhccCc-eEEEEccchHH
Confidence            442222112 44555554433

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.60  E-value=0.024  Score=56.02  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      +++++|+|||||||++..++..+   +..+..++.|..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            68999999999999999987664   455667887765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.56  E-value=0.018  Score=63.68  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ..|.+|+++|+||+||||.+.+++..+   +.....++.|.++
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R  180 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR  180 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence            458899999999999999888877554   3445567777664

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.53  E-value=0.01  Score=63.04  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ...-+++.|+||+||||+|+.+++.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            34468899999999999999998764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PLN02840 tRNA dimethylallyltransferase

Probab=96.53  E-value=0.0067  Score=68.59  Aligned_cols=45  Identities=20%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             hhhhhcccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           10 KAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        10 ~~~~~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +...-....+..+|+|+|++||||||+|..|++.++.  .+|+.|.+
T Consensus        11 ~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~~--~iis~Ds~   55 (421)
T PLN02840         11 SGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLNG--EIISADSV   55 (421)
T ss_pred             CCCccccccCCeEEEEECCCCCCHHHHHHHHHHHCCC--CeEecccc
Confidence            3333345556679999999999999999999999883  45666653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.53  E-value=0.018  Score=62.67  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=30.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      ...|.++++.|+||+||||+++.+++..+..+..++...
T Consensus        40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~   78 (316)
T PHA02544         40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD   78 (316)
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence            335778899999999999999999988775555565533

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.52  E-value=0.0047  Score=69.62  Aligned_cols=44  Identities=20%  Similarity=0.401  Sum_probs=34.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~   62 (761)
                      .|.-|+|.|+||+|||++|+.++..++..+..++...+.....+
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g  207 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG  207 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence            45669999999999999999999998877777766555433333

>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A

Probab=96.49  E-value=0.013  Score=62.38  Aligned_cols=143  Identities=19%  Similarity=0.220  Sum_probs=69.3

Q ss_pred             eEEEEecccccchhhHHHHHHhhhccc-CCeEEEEEEcccccccc-------cCCccccEEEeCCCCCCcCCCChhhHHH
Q 004319          314 ARLVLVDLTQGSKILSLVRAKAAQKHI-NPKKFFTFVGDITRLYT-------GGGLCCNVIANAANWRLKPGGGGVNAAI  385 (761)
Q Consensus       314 i~~v~vD~~~~s~~ls~v~~~~~~~~~-~~~~l~v~~GDIt~~~~-------~g~~~~daIVNaaN~~L~~~~gGV~~AI  385 (761)
                      ++++++|.+..-  .+.++..-....+ ++..+.+..|++..+..       ....++|+||.|||+.-- +|||.+.||
T Consensus        14 mkiil~D~N~~v--~k~W~~~l~~~~~~~~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGy-MgGGFDLai   90 (280)
T PF14519_consen   14 MKIILCDTNPIV--CKCWKKHLPKALISSSNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGY-MGGGFDLAI   90 (280)
T ss_dssp             -EEEEEES-HHH--HHHHHHH-----------EEEEES-HHHHHHHTTSS--------EEEEEEEETT-----SHHHHHH
T ss_pred             ceEEEEcCCHHH--HHHHHHHccHhhhccCceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhccc-CCCchhHHH
Confidence            689998876521  1111111111111 23448888898876642       133458999999999999 899999999


Q ss_pred             HHhhc-HHHHHHHHHhc--CCCCCCCEEEecCCC---CCCCCCCCCccEEEEe---cCCC---CCCCCCCCCCCCchhhH
Q 004319          386 FSAAG-PALEVATAERA--KSLYPGNSVIVPLPS---TSPLCGREGVTHVIHV---LGPN---MNPRRPNCLDGDYVKGC  453 (761)
Q Consensus       386 ~~aAG-~~l~~e~~~~~--~~~~~G~avvT~l~~---~~~~~~~l~~k~VIH~---VGP~---~~~~~~~~l~~~~~~~~  453 (761)
                      .++-| ..++.-.++..  .-.++|.+-+.+++.   .+.-.++-+++||||+   |.|.   |....      .+...-
T Consensus        91 ~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~------~~~t~~  164 (280)
T PF14519_consen   91 SEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV------PYETGW  164 (280)
T ss_dssp             HHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-------TTTTTH
T ss_pred             HHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH------HHHHHH
Confidence            99955 45555555543  236789988877431   1111245789999998   3443   32221      123344


Q ss_pred             HHHHHHHHHHHH
Q 004319          454 EILRKAYTSLFE  465 (761)
Q Consensus       454 ~~L~~ay~~~L~  465 (761)
                      +.+-++.-|.|.
T Consensus       165 ~~vfn~~WN~l~  176 (280)
T PF14519_consen  165 SLVFNAMWNALR  176 (280)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            556666666653

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.021  Score=63.20  Aligned_cols=64  Identities=20%  Similarity=0.385  Sum_probs=47.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDR   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~   85 (761)
                      =|+|+||||+|||-+|++++.+.+-.|.-|+.-.+-..|.++.+.+++.+....+  ....++||-
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE  312 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE  312 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhh
Confidence            5899999999999999999999986666677777777788887776655544443  333455553

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.004  Score=71.89  Aligned_cols=60  Identities=13%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG   78 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g   78 (761)
                      .|.=|+|+||||||||-+|++++.+.+..|..|-.-++.+.+.+..+..++.+.++.+..
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~s  603 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARAS  603 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence            366699999999999999999999999888777777776766676666555555544443

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.46  E-value=0.012  Score=54.89  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=50.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc--------CCCeEEEeccccc---------------CCCC-CcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS--------ARPWARICQDTIN---------------KGKS-GTKVQCLTSASSA   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~--------~~~~~~I~~D~i~---------------~~~~-~~~~~~~~~~~~~   74 (761)
                      .+.++++.|+||+||||+++++.+.+        ...+..++.....               .... .+...+.+.+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            45689999999999999999999876        3233334321110               1111 2345556777777


Q ss_pred             HHCCCc--EEEeCCCC--CHHHHHHHHHh-CCCCceEEEEEEeCC
Q 004319           75 LKKGKS--VFLDRCNL--EREQRTDFVKL-GGPEVDVHAVVLDLP  114 (761)
Q Consensus        75 L~~g~~--VIID~tn~--~~~~R~~~~~l-~~~~~~v~vV~Ld~p  114 (761)
                      +.....  +|||....  ....-..+..+ .  ...+.+|++-.|
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            766654  78888433  23333344444 4  334444444333

>TIGR00959 ffh signal recognition particle protein

Probab=96.46  E-value=0.025  Score=64.50  Aligned_cols=41  Identities=27%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~   57 (761)
                      ..+|.+++++|++||||||++.+|+..+    +.....++.|.++
T Consensus        96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R  140 (428)
T TIGR00959        96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR  140 (428)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            3468999999999999999988887653    4567788988764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=96.44  E-value=0.041  Score=61.98  Aligned_cols=133  Identities=16%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC---------------C-C-CCcHHH----HHHH
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK---------------G-K-SGTKVQ----CLTS   70 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~---------------~-~-~~~~~~----~~~~   70 (761)
                      .....+.+|+|+|+|++|||.++.++-+-+.   ......+...+++               . + ..-+.+    ++..
T Consensus        23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D  102 (438)
T KOG0234|consen   23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND  102 (438)
T ss_pred             cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh
Confidence            3556789999999999999999999877654   1112222211110               0 0 001112    2233


Q ss_pred             HHHHHH--CCCcEEEeCCCCCHHHHHHHHHh-C-CCCceEEEEEEeCCHHHHHHHHHh-cccccCCCCCCChHHHHHHHH
Q 004319           71 ASSALK--KGKSVFLDRCNLEREQRTDFVKL-G-GPEVDVHAVVLDLPAKLCISRSVK-RIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        71 ~~~~L~--~g~~VIID~tn~~~~~R~~~~~l-~-~~~~~v~vV~Ld~p~e~~~~R~~~-R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      +...+.  .|...|.|+||.++..|+.+... + ..++.+.+|.--+....++.+++. +.-..+...+...+++..-++
T Consensus       103 ~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl  182 (438)
T KOG0234|consen  103 LLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFL  182 (438)
T ss_pred             HHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHH
Confidence            333343  56779999999999999999999 6 778877777777888888888876 543333333445666666665


Q ss_pred             hh
Q 004319          146 QK  147 (761)
Q Consensus       146 ~~  147 (761)
                      ++
T Consensus       183 ~r  184 (438)
T KOG0234|consen  183 KR  184 (438)
T ss_pred             HH
Confidence            54

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.44  E-value=0.026  Score=60.62  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=32.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ..++.+|+++|++|+||||.+.+|+..+   +.....++.|.++
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r  112 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR  112 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            3457899999999999999999987655   3456678888653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]

Probab=96.43  E-value=0.0023  Score=68.68  Aligned_cols=76  Identities=29%  Similarity=0.393  Sum_probs=49.5

Q ss_pred             EEEecCCCCCCceEEEEeCCCCCCChh-cCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC---cccceeee
Q 004319          586 VVLNDLYPKAQKHILVLSRFDGLDRLA-DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---SMRQLHLH  661 (761)
Q Consensus       586 vai~D~~Pka~~H~LVIPk~~hi~~l~-dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---Sv~HLHlH  661 (761)
                      ||+-...|...+|.|+||+  -..++. -++.+.+.+--+|+       .+.    ....|++||++.-   ||+|||+|
T Consensus       169 vvaIN~sPie~~H~LiiP~--V~kc~pQrit~~al~lav~~m-------~~~----dd~~frlgyNSlga~AsVNHLHfh  235 (431)
T KOG2720|consen  169 VVAINVSPIEYGHVLIIPR--VLKCLPQRITHKALLLAVTMM-------AEA----DDPYFRLGYNSLGAFASVNHLHFH  235 (431)
T ss_pred             eEEEecCccccCcEEEecc--hhccCcceeeHHHHHHHHHHH-------Hhc----CCchhheecccchhhhhhhhhhhh
Confidence            5566778999999999999  233332 23333333322222       221    1234899999865   99999999


Q ss_pred             eecCCcccccccc
Q 004319          662 VISQDFNSKHLKN  674 (761)
Q Consensus       662 VIs~d~~s~~lk~  674 (761)
                      ..-.+++++--|.
T Consensus       236 a~y~p~d~~i~~~  248 (431)
T KOG2720|consen  236 AYYLPMDFPIEKA  248 (431)
T ss_pred             hhhccccCccccC
Confidence            9887777765544

>PHA03132 thymidine kinase; Provisional

Probab=96.42  E-value=0.043  Score=64.45  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -.+|++-|.-||||||+++.|.+.++
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg  282 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILG  282 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998874

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.42  E-value=0.0095  Score=66.13  Aligned_cols=81  Identities=19%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc--EEEeCCCC-CHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDRCNL-EREQRTDF   96 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~--VIID~tn~-~~~~R~~~   96 (761)
                      ..-.||.||||+||||+|+.|+...+..|..+|.-.-  + ..+.+..++.+++....|+-  ++||-.+. ++.+...+
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--g-vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l  124 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--G-VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL  124 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--c-HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh
Confidence            3457899999999999999999999877766665221  1 01233455666566665655  45676543 33444444


Q ss_pred             HHhCCCC
Q 004319           97 VKLGGPE  103 (761)
Q Consensus        97 ~~l~~~~  103 (761)
                      +-.-+.|
T Consensus       125 Lp~vE~G  131 (436)
T COG2256         125 LPHVENG  131 (436)
T ss_pred             hhhhcCC
Confidence            4333333

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.40  E-value=0.034  Score=61.04  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      .++.+++|+|++|+||||++.+|+..+   +.....++.|..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            457899999999999999999998655   3456667777653

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.40  E-value=0.016  Score=60.82  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..++|+|+||+|||+++..++...
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999887653

>PRK06620 hypothetical protein; Validated

Probab=96.35  E-value=0.029  Score=58.14  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..++|.|+||||||++++.++...+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            4589999999999999999887665

>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]

Probab=96.34  E-value=0.0065  Score=64.13  Aligned_cols=108  Identities=13%  Similarity=0.242  Sum_probs=72.9

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCce
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASL  643 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~  643 (761)
                      |.+|.+.-..-+..||.|+|+++++---..--++-+|+||| +|+..+.+|++....-|..+++....-..+.+...  .
T Consensus       203 l~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk-~h~~~~~~l~~~~k~dLasiLK~ll~Kydnlfets--f  279 (354)
T KOG2958|consen  203 LMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPK-RHVSRFHELDEVEKVDLASILKLLLIKYDNLFETS--F  279 (354)
T ss_pred             HHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeech-hhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccC--C
Confidence            44565544444567999999999998888888899999999 79999998887654433333332222222222222  2


Q ss_pred             eeeecccCCC--------cccceeeeeecCCcccccccc
Q 004319          644 AFRLGYHSAP--------SMRQLHLHVISQDFNSKHLKN  674 (761)
Q Consensus       644 ~~~~G~ha~p--------Sv~HLHlHVIs~d~~s~~lk~  674 (761)
                      -+++|.|..|        .-+-||||...+=..|.-.++
T Consensus       280 PYsmg~h~aPl~~t~~e~~n~W~h~hFyppllrsatV~k  318 (354)
T KOG2958|consen  280 PYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLRSATVRK  318 (354)
T ss_pred             ccccccccCCcccccccccchhhhhhccccchhhccccc
Confidence            3789999988        113479998888777766544

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.34  E-value=0.0066  Score=60.56  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      +++++|++||||||||.+++...+.+..++..
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            47899999999999999998876655656644

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.33  E-value=0.0075  Score=68.18  Aligned_cols=35  Identities=23%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      .|.-++|.|+||+|||++|+.++...+..+..+..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~  212 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG  212 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence            46779999999999999999999998866665544

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.0059  Score=65.17  Aligned_cols=64  Identities=17%  Similarity=0.364  Sum_probs=49.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCc--EEEeC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKS--VFLDR   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~--VIID~   85 (761)
                      =|+|.||||.|||++|++++.+.+-.|.-|+..++-..|.+..+.+.+.+.+..++.+.  +.||-
T Consensus       168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDE  233 (439)
T KOG0739|consen  168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDE  233 (439)
T ss_pred             eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeeh
Confidence            68999999999999999999888855656666666677888888888777777766655  34443

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.31  E-value=0.0068  Score=68.38  Aligned_cols=43  Identities=19%  Similarity=0.482  Sum_probs=36.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-CCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-~~~~   62 (761)
                      |.-|+|+|+||+||||+|+.|++.++.++.+++...+.+ +|.+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG   93 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence            567899999999999999999999998888888766654 5655

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.30  E-value=0.004  Score=59.19  Aligned_cols=30  Identities=40%  Similarity=0.719  Sum_probs=26.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      |+|+|+||+|||++++.+++.++.++..+.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~   31 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRIN   31 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEEE
Confidence            799999999999999999999986665554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.29  E-value=0.009  Score=68.25  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=30.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .|.-++|.|+||+|||++|+.++..++..+..+....+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL  253 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL  253 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence            45678899999999999999999998866666654444

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=96.22  E-value=0.0063  Score=62.76  Aligned_cols=31  Identities=29%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .......++-|.|+||+||||.+..+....+
T Consensus       114 L~~n~~~l~glag~pGtgkst~~a~v~~aWp  144 (323)
T KOG2702|consen  114 LTSNNEELTGLAGRPGTGKSTRIAAVDNAWP  144 (323)
T ss_pred             hcccchheeeeecCCCCcchhHHHHHHhhcc
Confidence            4455677999999999999999999887544

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.009  Score=69.08  Aligned_cols=67  Identities=24%  Similarity=0.372  Sum_probs=50.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~   85 (761)
                      .|.=|+|.||||||||.||++++.+++.++.-|+.-.+-.|..+..++-++.+.+.....  ..++||-
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDe  290 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDE  290 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeec
Confidence            345589999999999999999999999999889988888888887766554444333332  3355554

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.20  E-value=0.0083  Score=66.93  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=28.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      |.-++|.|+||+||||+|+.++..++..+..+..
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~  189 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG  189 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence            5568999999999999999999998866655544

Many proteins may score above the trusted cutoff because an internal

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.18  E-value=0.033  Score=63.11  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~   57 (761)
                      .+.+++++|++||||||++.+|+..+    +.....++.|..+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            46789999999999999999998654    3446667888764

>PRK12377 putative replication protein; Provisional

Probab=96.17  E-value=0.014  Score=61.84  Aligned_cols=102  Identities=12%  Similarity=0.110  Sum_probs=59.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH--HHHHHHHHHHHCCCcEEEeCCC---CCHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCN---LEREQ   92 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~--~~~~~~~~~L~~g~~VIID~tn---~~~~~   92 (761)
                      .-++|.|+||+|||++|.+++..+   +..+..++..++.........  .....+.+.+..-..+|||...   .+...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~  181 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE  181 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence            468999999999999999988765   344445554333211000000  0112345566777789999963   34444


Q ss_pred             HHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319           93 RTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        93 R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ...+..+  .++. ....+|--+.+.+.+.+++
T Consensus       182 ~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~  214 (248)
T PRK12377        182 QVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL  214 (248)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence            4555555  3332 2344555677777665543

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.031  Score=61.74  Aligned_cols=101  Identities=22%  Similarity=0.335  Sum_probs=64.4

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC---------------c--H---HH-HHHH
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG---------------T--K---VQ-CLTS   70 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~---------------~--~---~~-~~~~   70 (761)
                      ...++|.+|+++|+.||||||.+-+|+..+.   .....+|.|.++.+.+.               +  .   .. ..+-
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~eg  175 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEG  175 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHH
Confidence            3566899999999999999999999886553   55678999999754321               1  0   11 1133


Q ss_pred             HHHHHHCCCc-EEEeCCCCCHHHHH---HHHHh-CCCCceEEEEEEeCCH
Q 004319           71 ASSALKKGKS-VFLDRCNLEREQRT---DFVKL-GGPEVDVHAVVLDLPA  115 (761)
Q Consensus        71 ~~~~L~~g~~-VIID~tn~~~~~R~---~~~~l-~~~~~~v~vV~Ld~p~  115 (761)
                      +.+.-+++-. +|+|.......+-.   +++++ +.-...-+++++|.+.
T Consensus       176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            4444455544 56676555543332   34444 4455555678889886

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.12  E-value=0.012  Score=66.54  Aligned_cols=44  Identities=18%  Similarity=0.450  Sum_probs=35.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-CCCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-KGKSG   62 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~~~~~   62 (761)
                      .|.-|+|+|+||+||||+|++|++.++.++..++.-.+. .++.+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG   90 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   90 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence            456799999999999999999999999777667654454 35655

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.09  E-value=0.031  Score=62.75  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=31.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~   57 (761)
                      +|.+|+|+|++|+||||++.+|+..+.   .....++.|..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            467999999999999999999986543   346678888764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.09  E-value=0.058  Score=53.21  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=22.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++.=|+++|+||+||||++.+++..+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            345689999999999999999987653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.08  E-value=0.025  Score=63.26  Aligned_cols=72  Identities=18%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCCCc----------------HHHHHHHHHHHHHC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKSGT----------------KVQCLTSASSALKK   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~~~----------------~~~~~~~~~~~L~~   77 (761)
                      +..+++|+|++|+||||++.+|+..+    + .....+..|.++-+....                ...-+..+...+..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            45699999999999999999998653    3 345667788774321100                00011223344556


Q ss_pred             CCcEEEeCCCCCH
Q 004319           78 GKSVFLDRCNLER   90 (761)
Q Consensus        78 g~~VIID~tn~~~   90 (761)
                      .+.++||...+..
T Consensus       216 ~DlVLIDTaG~~~  228 (374)
T PRK14722        216 KHMVLIDTIGMSQ  228 (374)
T ss_pred             CCEEEEcCCCCCc
Confidence            6778999876664

>CHL00181 cbbX CbbX; Provisional

Probab=96.05  E-value=0.021  Score=61.78  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=38.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHH-HHHHHHHHHHCCCcEEEeCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~~g~~VIID~t   86 (761)
                      .-++|.|+||+||||+|+.+++.+.       ..+..++.+.+.....+.... ....+.+  ..|..++||-.
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~  131 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEA  131 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEcc
Confidence            4588999999999999999987542       135566666553323222111 1122222  24567788874

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.05  E-value=0.016  Score=62.55  Aligned_cols=39  Identities=26%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~   57 (761)
                      .+.+|+|+|++|+||||++.+|+..+    + .....|+.|.++
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            56799999999999999999987654    3 566778888764

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.04  E-value=0.044  Score=61.35  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINK   58 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~   58 (761)
                      ..+.+++++|++|+||||++.+|+..+   +.....++.|.++-
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            356799999999999999999988654   34566788888753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.00  E-value=0.0053  Score=68.02  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=25.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ....+++|+|||||||||+|++|+..++
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3568999999999999999999999876

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.99  E-value=0.0075  Score=62.71  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=25.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      ..|.++++.|.||+||||+|+.+..+    ..+++.|.
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~~----~~~~~~d~   43 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPGK----TLVLSFDM   43 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCCC----CEEEeccc
Confidence            34678999999999999999998532    34555554

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=95.97  E-value=0.014  Score=63.14  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +|+++|++|||||++|..|++.++  ..+|+.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~--~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLN--AEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC--CcEEEechh
Confidence            589999999999999999999987  456777764

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.91  E-value=0.017  Score=70.49  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~   72 (761)
                      .|.=|+|.|+||||||++|++++..++..+..++..++...+.+..+..+..+.
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f  539 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIF  539 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHH
Confidence            345589999999999999999999999778777776665556665555444333

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.88  E-value=0.045  Score=62.23  Aligned_cols=77  Identities=18%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCCC-CCHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCN-LEREQRTDF   96 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~tn-~~~~~R~~~   96 (761)
                      ..-++|.|+||+||||+|+.+++..+..+..++....  + .......++.+.....  .+..+|||-.. +...+...+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~-~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L  112 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--G-VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDAL  112 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--c-HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHH
Confidence            3357789999999999999999988877766654221  1 0111222333332232  34557888743 344555555


Q ss_pred             HHh
Q 004319           97 VKL   99 (761)
Q Consensus        97 ~~l   99 (761)
                      +..
T Consensus       113 L~~  115 (413)
T PRK13342        113 LPH  115 (413)
T ss_pred             HHH
Confidence            555

>PHA02244 ATPase-like protein

Probab=95.85  E-value=0.024  Score=63.14  Aligned_cols=66  Identities=26%  Similarity=0.347  Sum_probs=44.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc--ccc-CC---CCCcHHHHHHHHHHHHHCCCcEEEeCCCCCH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQD--TIN-KG---KSGTKVQCLTSASSALKKGKSVFLDRCNLER   90 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D--~i~-~~---~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~   90 (761)
                      |+|.|+||+|||++|+.++..++.++..++..  .+. .+   ..+.+.  ...+.++++.|..+|||-.+.-.
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~~GgvLiLDEId~a~  193 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFKKGGLFFIDEIDASI  193 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccccc--chHHHHHhhcCCEEEEeCcCcCC
Confidence            77899999999999999999999888777632  110 01   011111  12345567889999999977544

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=95.84  E-value=0.036  Score=59.89  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=37.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      -+++.|+||+||||+|+.+++.+.       ..+..++.+.+.....+....-...+.+. ..|..++||-..
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~  131 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAY  131 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechh
Confidence            588999999999999988776542       13556666555433333222211111221 235567888743

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.84  E-value=0.051  Score=51.83  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D   54 (761)
                      +++|+|+||+||||++..++....   ....+++.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e   36 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE   36 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            478999999999999999976652   344455543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK04195 replication factor C large subunit; Provisional

Probab=95.82  E-value=0.05  Score=63.16  Aligned_cols=36  Identities=14%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      +..++|.|+||+||||+|+.+++.++..+..++..+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd   74 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD   74 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence            678999999999999999999999986666665533

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.019  Score=66.69  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~   76 (761)
                      ..+.-++|.||||+|||.+|++++..++.++..+..-.+-..|.+..+..++.+.....
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~  332 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR  332 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence            45668999999999999999999998886676666667777788877776655554444

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=95.81  E-value=0.018  Score=63.38  Aligned_cols=62  Identities=21%  Similarity=0.332  Sum_probs=41.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      +..+++.|+||+||||+|+.+++.++..+..++...+..      ...+..+...+..+..++||-..
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l~~~~vl~IDEi~  112 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNLEEGDVLFIDEIH  112 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhcccCCEEEEecHh
Confidence            446889999999999999999999885554444332211      11222333445667778888744

>PRK08116 hypothetical protein; Validated

Probab=95.80  E-value=0.025  Score=60.59  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=58.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC----CCcHHHHHHHHHHHHHCCCcEEEeCCC---CC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LE   89 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~----~~~~~~~~~~~~~~L~~g~~VIID~tn---~~   89 (761)
                      ..-++|.|++|+|||.+|.+++..+   +..+..++...+.+..    ......-...+.+.+..-..+|||...   .+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t  193 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT  193 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC
Confidence            3458999999999999999998764   4455556654432110    000001112344556666788999953   23


Q ss_pred             HHHHHHHHHh--CCC-CceEEEEEEeCCHHHHHHHH
Q 004319           90 REQRTDFVKL--GGP-EVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        90 ~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ......+..+  ..+ .....+|--+.+.+.+..+.
T Consensus       194 ~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~  229 (268)
T PRK08116        194 EWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQY  229 (268)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            3344444444  211 11234555677777765544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.77  E-value=0.011  Score=68.72  Aligned_cols=38  Identities=26%  Similarity=0.474  Sum_probs=30.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .|.=++|.||||+|||++|+.++...+.++..++...+
T Consensus        87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~  124 (495)
T TIGR01241        87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF  124 (495)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence            34458999999999999999999998877766665444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.73  E-value=0.022  Score=64.12  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~-------~~~~~~I~~D~i~   57 (761)
                      ..|.+|+++|++|+||||.+.+|+..+       +.....++.|.++
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            357899999999999999999998754       2456678888764

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=95.73  E-value=0.02  Score=61.84  Aligned_cols=63  Identities=17%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      .+..++|.|+||+||||+|+.++..++..+..+....+.     .... +......+..+..++||-..
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~vl~iDEi~   91 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE-----KPGD-LAAILTNLEEGDVLFIDEIH   91 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc-----Cchh-HHHHHHhcccCCEEEEehHh
Confidence            344588999999999999999999987554443322111     1111 12223345666778888743

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional

Probab=95.72  E-value=0.019  Score=64.08  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=47.3

Q ss_pred             cCcEEEEecCCCCCCceEEEEeCCCCCCChh-cCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC---cccc
Q 004319          582 SDDVVVLNDLYPKAQKHILVLSRFDGLDRLA-DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---SMRQ  657 (761)
Q Consensus       582 dd~~vai~D~~Pka~~H~LVIPk~~hi~~l~-dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---Sv~H  657 (761)
                      +...+++-..+|...+|+|+||+.  ...+- -++.       .+...+..++.+...    ..|++||+.--   |++|
T Consensus       168 ~s~~~VlINvsPI~~gH~LlvP~~--~~~lPQ~i~~-------~~l~la~~~a~~~~~----p~frvgYNSlGA~ASvNH  234 (403)
T PLN03103        168 NSPNVVAINVSPIEYGHVLLVPRV--LDCLPQRIDP-------DSFLLALYMAAEANN----PYFRVGYNSLGAFATINH  234 (403)
T ss_pred             CCccEEEEeCCCCccCeEEEcCCc--ccCCCeEecH-------HHHHHHHHHHHhcCC----CcEEEEecCCccccCcce
Confidence            344578889999999999999983  22222 2333       233334444443322    24899999743   9999


Q ss_pred             eeeeeecCC
Q 004319          658 LHLHVISQD  666 (761)
Q Consensus       658 LHlHVIs~d  666 (761)
                      ||+|....+
T Consensus       235 LHFQa~yl~  243 (403)
T PLN03103        235 LHFQAYYLA  243 (403)
T ss_pred             eeeeecccC
Confidence            999988753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.66  E-value=0.0094  Score=62.75  Aligned_cols=30  Identities=33%  Similarity=0.550  Sum_probs=21.8

Q ss_pred             EEcCCCCcHHHHHHHHHHHcC---CCeEEEecc
Q 004319           25 MVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (761)
Q Consensus        25 LvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D   54 (761)
                      ++|++|||||||++.+.+-+.   +....||.|
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD   33 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD   33 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence            589999999999999887654   566677754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK08727 hypothetical protein; Validated

Probab=95.66  E-value=0.099  Score=54.75  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ..++|.|++|+|||+++..+...
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~   64 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAA   64 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999998654

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.63  E-value=0.067  Score=59.77  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|+||+||||+|+.+++.+.
T Consensus        36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         36 RIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            3466889999999999999999998875

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.61  E-value=0.052  Score=62.82  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -|..++++|+||+||||+|+.+++.++
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999998865

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.59  E-value=0.065  Score=61.76  Aligned_cols=108  Identities=15%  Similarity=0.149  Sum_probs=58.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---EEEe--------------ccccc-CCC-CCcHH---HHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW---ARIC--------------QDTIN-KGK-SGTKV---QCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---~~I~--------------~D~i~-~~~-~~~~~---~~~~~~~~~L~   76 (761)
                      -+..++++|+||+||||+|+.+++.++...   ...|              .|.+. +.. ....+   +..+.+...-.
T Consensus        39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~  118 (484)
T PRK14956         39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM  118 (484)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhh
Confidence            356789999999999999999999876210   0000              11111 100 00011   11122221111


Q ss_pred             --CCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           77 --KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        77 --~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                        ..+.+|||-.. ++......+++. .+....+.+|......+.+..++.-|-
T Consensus       119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC  172 (484)
T PRK14956        119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC  172 (484)
T ss_pred             cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence              23468888743 444555666666 655555666655555566666666664

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.58  E-value=0.088  Score=59.06  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCCCCC----------------cHHHHHHHHHHHHHCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSG----------------TKVQCLTSASSALKKG   78 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~~~~----------------~~~~~~~~~~~~L~~g   78 (761)
                      ..+|+|+||.|.||||...+|+..+.     ....+|..|.+|-|...                ....-+..+...++.-
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            67999999999999998888887754     45678999999754321                1122335556667777


Q ss_pred             CcEEEeCCCCCHH---HHHHHHHh
Q 004319           79 KSVFLDRCNLERE---QRTDFVKL   99 (761)
Q Consensus        79 ~~VIID~tn~~~~---~R~~~~~l   99 (761)
                      +.|+||....+..   ....+..+
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~  306 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKEL  306 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHH
Confidence            8899999666654   44444444

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.56  E-value=0.026  Score=64.12  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .-++|+|+||+||||+|+.|++.++.++..++...+
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l  144 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL  144 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            358999999999999999999999877877776554

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=95.55  E-value=0.0088  Score=61.97  Aligned_cols=58  Identities=28%  Similarity=0.476  Sum_probs=37.6

Q ss_pred             EEEEcCCCCcHHHHHHHH---HHHcCCCeEEEecccccCCCC----CcHHHH--HHHHHHHHHCCCc
Q 004319           23 VIMVGAPGSGKSTFCEHV---MRSSARPWARICQDTINKGKS----GTKVQC--LTSASSALKKGKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L---~~~~~~~~~~I~~D~i~~~~~----~~~~~~--~~~~~~~L~~g~~   80 (761)
                      -+++|||||||||++...   ....++++..+|.|--.++..    .+..+.  ...+.+.++-|.+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPN   71 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPN   71 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCc
Confidence            578999999999998764   456678888888876544332    122222  2455555665543

>PRK06893 DNA replication initiation factor; Validated

Probab=95.54  E-value=0.12  Score=53.82  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..++|.|+||+|||+++..++..+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998764

>TIGR03689 pup_AAA proteasome ATPase

Probab=95.54  E-value=0.026  Score=65.62  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .|.=++|.||||+|||++|+.++..++
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            345689999999999999999999876

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.49  E-value=0.06  Score=65.17  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=46.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~   76 (761)
                      .+.+|+|+|++|+||||.+.+|+..+    + .....++.|..+-+..                 .+... +..+.+.+.
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~  262 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG  262 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc
Confidence            35799999999999999999988654    2 3456677777642110                 11122 233344555


Q ss_pred             CCCcEEEeCCCCCH
Q 004319           77 KGKSVFLDRCNLER   90 (761)
Q Consensus        77 ~g~~VIID~tn~~~   90 (761)
                      ..+.||||......
T Consensus       263 ~~D~VLIDTAGRs~  276 (767)
T PRK14723        263 DKHLVLIDTVGMSQ  276 (767)
T ss_pred             CCCEEEEeCCCCCc
Confidence            56778999966443

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.026  Score=66.71  Aligned_cols=37  Identities=24%  Similarity=0.568  Sum_probs=33.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      .++.|+||||.|||++++.+++.+++.|++++..=++
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr  387 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR  387 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc
Confidence            5899999999999999999999999999999975554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.48  E-value=0.13  Score=52.44  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +|+++|++||||||+.+.+.....
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            799999999999999999877654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.46  E-value=0.019  Score=64.81  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~   57 (761)
                      ..|.||.|.|++||||||+++.|...+.   .....|+.|++.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            4789999999999999999999976553   235556666653

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.45  E-value=0.029  Score=68.44  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~   85 (761)
                      .+.-|+|.|+||+||||+++.++..++..+..++...+.....+.....+..+.+.....  ..++||-
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDE  279 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE  279 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence            456789999999999999999999988777777765554444444333333222222222  2356665

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.37  E-value=0.015  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+|+|.|..|||||||++.+++.++
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            446899999999999999999999987

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05642 DNA replication initiation factor; Validated

Probab=95.37  E-value=0.075  Score=55.71  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ..++|+|++|+|||.+++.+...+   +....+++.+.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~   84 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL   84 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence            468999999999999999987542   344555665444

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.36  E-value=0.041  Score=58.17  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCc---HHHHHHHHHHHHHCCCcEEEeCCCCC---HH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGT---KVQCLTSASSALKKGKSVFLDRCNLE---RE   91 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~---~~~~~~~~~~~L~~g~~VIID~tn~~---~~   91 (761)
                      ..++|.|+||+|||+++.+++..+   +..+..++..++.......   ...-...+.+.+..-..+|||.....   ..
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~  179 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY  179 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHH
Confidence            478999999999999999998776   3445555543332100000   00111234455666667899985433   23


Q ss_pred             HHHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319           92 QRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        92 ~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ....+..+  .++. ....+|--+.+.+.+.+++
T Consensus       180 ~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~  213 (244)
T PRK07952        180 EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL  213 (244)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHh
Confidence            33344444  3322 3345666677777766544

>PRK04296 thymidine kinase; Provisional

Probab=95.36  E-value=0.13  Score=52.24  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec--ccc------cC--CC------CCcHHHHHHHHHHHHHCC--C
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ--DTI------NK--GK------SGTKVQCLTSASSALKKG--K   79 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~--D~i------~~--~~------~~~~~~~~~~~~~~L~~g--~   79 (761)
                      .+++++|+||+||||++..++..+   +....++..  |.-      ..  +.      .......+..+.+  ..+  .
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d   80 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKID   80 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCC
Confidence            589999999999999999987665   334444422  221      00  10      0011222233322  222  3


Q ss_pred             cEEEeCCCCC-HHHHHHHHHh-CCCCceEEEEEEeC
Q 004319           80 SVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDL  113 (761)
Q Consensus        80 ~VIID~tn~~-~~~R~~~~~l-~~~~~~v~vV~Ld~  113 (761)
                      .||||-..+- .++...+++. +..+..+.+.-++.
T Consensus        81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~  116 (190)
T PRK04296         81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT  116 (190)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            4899986544 4556667777 77787666666553

>PLN02796 D-glycerate 3-kinase

Probab=95.32  E-value=0.021  Score=63.02  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..|.+|.|+|++||||||+++.|...+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            4689999999999999999999987654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.32  E-value=0.011  Score=59.57  Aligned_cols=102  Identities=17%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEeccccc----CCCC-CcHHHHHHHHHHHHHCCCcEEEeCCCCCH-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTIN----KGKS-GTKVQCLTSASSALKKGKSVFLDRCNLER-   90 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~----~~~~-~~~~~~~~~~~~~L~~g~~VIID~tn~~~-   90 (761)
                      ..-++|.|+||+|||.+|..++..   .+....+++.+++.    .... ...    ....+.+..-..+|||...... 
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~----~~~~~~l~~~dlLilDDlG~~~~  122 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSY----EELLKRLKRVDLLILDDLGYEPL  122 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTH----CHHHHHHHTSSCEEEETCTSS--
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccch----hhhcCccccccEecccccceeee
Confidence            456999999999999999998754   34556666654442    1111 111    2234556677889999965544 


Q ss_pred             --HHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           91 --EQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        91 --~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                        ..+..+.++  .+++-...+|--+.+.+.+.+..-.|
T Consensus       123 ~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~  161 (178)
T PF01695_consen  123 SEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDR  161 (178)
T ss_dssp             -HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-----
T ss_pred             cccccccchhhhhHhhcccCeEeeCCCchhhHhhccccc
Confidence              333333333  22222345666677777777666544

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.03  Score=65.50  Aligned_cols=56  Identities=13%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS   73 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~   73 (761)
                      ..|.=|++-|||||||||+|++++...+..|.-|..-++...|.+..+..+..+.+
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~  521 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFR  521 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHH
Confidence            46778999999999999999999999887787777777777777776665544443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.27  E-value=0.025  Score=58.15  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=39.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ..+..++|+|++|+||||+|+.+.....   ..+..++.+.+....        ..+...+.....+|||...
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~  100 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVE  100 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChh
Confidence            3456899999999999999999987643   345556654442110        1122333444567888854

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily

Probab=95.27  E-value=0.15  Score=50.10  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             EEEEEcccccccccCCccccEEEeCCCCCCcCCC-ChhhHHHHHhhcH--HHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGG-GGVNAAIFSAAGP--ALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~-gGV~~AI~~aAG~--~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (761)
                      |+.++||+|+..... .+..+||+..|..-. .| ||+++||.++.-.  ..-+.|.+. +.+.-|++.+++....... 
T Consensus         2 I~yv~GD~~~p~~~~-~~~~iI~H~cN~~G~-WG~gGia~al~~k~p~~~~~Y~~~~~~-~dl~LG~~~li~v~~~~~~-   77 (152)
T cd03331           2 VRYVYGDVTHPSAVC-AEDAIIVHCVDDSGH-WGRGGLFTALEKRSDQPRKAYELAGKM-KDLHLGDLHLFPIDDKNSR-   77 (152)
T ss_pred             eEEEeCccCCCCccC-CCCeEEEEEECCCCC-CCcchHHHHHHHhCCcHHHHHHHHHhc-CCCccccEEEEEeccccCC-
Confidence            678899999985210 124699999999988 77 7999999998732  222234443 5677899999885321111 


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~  476 (761)
                       .-+-.+|...++....+..+     ...-....|++|...+-..|    +||.+|.|.
T Consensus        78 -~~~~~~va~l~~q~~~~~~~-----~~~~~~~aL~~~L~~~~~~a~~~~~sVhmPrIg  130 (152)
T cd03331          78 -LKGPDWVALIVAQHRDKSNP-----LSGIKLSALEKGLKKIYFAAKQKSASVHLPRIG  130 (152)
T ss_pred             -CCCCeEEEEEEeEccCCCCC-----CCccCHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence             12237888889887655422     11234566777666665544    356666554

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven

>CHL00176 ftsH cell division protein; Validated

Probab=95.27  E-value=0.028  Score=67.22  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=30.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      |.-++|.|+||+|||++|+.++...+.++..++...+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f  252 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEF  252 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHH
Confidence            4569999999999999999999998877766655443

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.25  E-value=0.19  Score=50.53  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccccC---CC---------C--CcHHHHHHHHHHHHHCCCcE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINK---GK---------S--GTKVQCLTSASSALKKGKSV   81 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i~~---~~---------~--~~~~~~~~~~~~~L~~g~~V   81 (761)
                      ...+++++|++||||||+.+.|......  ....+. .+.+..   ..         .  .......+.+...++....+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~  103 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR  103 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence            3468999999999999999999876541  122221 111110   00         0  01112335556667777777


Q ss_pred             EEeCCCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           82 FLDRCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |+=+.-...+.+. +++.  ..+..-+..+.- .+......|+..+...
T Consensus       104 i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha-~s~~~~~~Rl~~~~~~  150 (186)
T cd01130         104 IIVGEVRGGEALD-LLQAMNTGHPGGMTTIHA-NSAEEALTRLELLPSN  150 (186)
T ss_pred             EEEEccCcHHHHH-HHHHHhcCCCCceeeecC-CCHHHHHHHHHHHHhh
Confidence            6666556655443 4433  333212222332 2445577888877653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.25  E-value=0.083  Score=51.03  Aligned_cols=85  Identities=20%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEecc-ccc--CCCCCcHHHHHHHHHHHHHCCCcEEEeC--CCCCHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQD-TIN--KGKSGTKVQCLTSASSALKKGKSVFLDR--CNLERE   91 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~D-~i~--~~~~~~~~~~~~~~~~~L~~g~~VIID~--tn~~~~   91 (761)
                      +-.++.|+|++|||||||.+.++.....  .-..++.. .+.  .....-..+....++..+...+.+|+|-  .+++..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~  104 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE  104 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            3468999999999999999999765431  11112110 000  0011112333455556666777788988  567778


Q ss_pred             HHHHHHHh-CCCC
Q 004319           92 QRTDFVKL-GGPE  103 (761)
Q Consensus        92 ~R~~~~~l-~~~~  103 (761)
                      .+..+.++ ++.+
T Consensus       105 ~~~~l~~~l~~~~  117 (144)
T cd03221         105 SIEALEEALKEYP  117 (144)
T ss_pred             HHHHHHHHHHHcC
Confidence            88888887 5543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=95.24  E-value=0.19  Score=50.97  Aligned_cols=141  Identities=18%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             CCCccchhhhhhhh-cccCcc-EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe----------ccc------ccC---C
Q 004319            1 MDTDIDDTCKAKDE-EKKWKQ-ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC----------QDT------INK---G   59 (761)
Q Consensus         1 m~~~~~~~~~~~~~-~~~~~~-~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~----------~D~------i~~---~   59 (761)
                      |++-....|..... ....+| .+.++-|--|+|||||.+.+.......|.++.          .+.      .+.   .
T Consensus         1 ma~~~~~sc~~~~~~~eg~~pkr~~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep~R   80 (244)
T KOG4235|consen    1 MATSPKESCSSSSGLHEGTGPKRLSIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKWQNVQGANANLLDMMYREPAR   80 (244)
T ss_pred             CCCCcccccCCccccccCCCCceeEEEecccccchHHHHHHHHhccCccceecCchHHHHhccccccccHHHHHhhchHh
Confidence            56666667765332 222333 56669999999999999988877553332221          111      110   1


Q ss_pred             CCCcHH--HHHHHHHHHHH--CC--CcEEEeCCCCCHHH-------------------HHHHHHh--CCCCceE-EEEEE
Q 004319           60 KSGTKV--QCLTSASSALK--KG--KSVFLDRCNLEREQ-------------------RTDFVKL--GGPEVDV-HAVVL  111 (761)
Q Consensus        60 ~~~~~~--~~~~~~~~~L~--~g--~~VIID~tn~~~~~-------------------R~~~~~l--~~~~~~v-~vV~L  111 (761)
                      |.-+..  .++.++...+.  .|  ..-|.+...++..+                   -+.|.+.  +..++.+ .+|||
T Consensus        81 ws~tfQtYv~ltrL~~~~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYL  160 (244)
T KOG4235|consen   81 WSYTFQTYVFLTRLKVQLEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYL  160 (244)
T ss_pred             heehhhHHHHHHHHHHHhcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEe
Confidence            111111  12233332222  12  11233333222211                   1234444  3333332 57999


Q ss_pred             eCCHHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319          112 DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (761)
Q Consensus       112 d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~  144 (761)
                      .+++|+|.+|+..|.+.+..   .+|-.-+...
T Consensus       161 rasPetc~~Ri~~R~R~EE~---gipL~YLe~L  190 (244)
T KOG4235|consen  161 RASPETCYKRIYLRAREEEK---GIPLKYLEAL  190 (244)
T ss_pred             ecChHHHHHHHHHHhhhhhc---CCcHHHHHHH
Confidence            99999999999999876433   5665554444

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.20  E-value=0.02  Score=62.80  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      -|+|.|+||+||||+++.+++.++.++..|+.
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~   97 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNL   97 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEe
Confidence            48999999999999999999999977777754

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.18  E-value=0.11  Score=56.83  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+++.|+||+||||+|+.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999988763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.16  E-value=0.015  Score=59.98  Aligned_cols=24  Identities=38%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      +-.+++++||+|||||||.|.+-.
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            446899999999999999999863

>PRK06921 hypothetical protein; Provisional

Probab=95.12  E-value=0.067  Score=57.30  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC-------
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-------   88 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~-------   88 (761)
                      ..-++|.|+||+|||+++.+++..+    +..+..+....+........ .......+.+..-..+|||....       
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~  195 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMKKVEVLFIDDLFKPVNGKPR  195 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEEeccccccCCCcc
Confidence            4568999999999999999988764    33334444322211000000 11122334455667789999622       


Q ss_pred             -CHHHHHHHHHh--CCC-CceEEEEEEeCCHHHHHH
Q 004319           89 -EREQRTDFVKL--GGP-EVDVHAVVLDLPAKLCIS  120 (761)
Q Consensus        89 -~~~~R~~~~~l--~~~-~~~v~vV~Ld~p~e~~~~  120 (761)
                       +......+..+  ..+ .-...+|--+.+.+.+..
T Consensus       196 ~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~  231 (266)
T PRK06921        196 ATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLD  231 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhh
Confidence             23333344444  221 112335556676666553

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.11  E-value=0.023  Score=60.56  Aligned_cols=32  Identities=38%  Similarity=0.525  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      -++|.|+||+|||++|+.+++.++.++..++.
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~   54 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLING   54 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeC
Confidence            46789999999999999999988888877753

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PLN03025 replication factor C subunit; Provisional

Probab=95.11  E-value=0.092  Score=57.55  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .|. +++.|+||+||||+|+.+++.+
T Consensus        34 ~~~-lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         34 MPN-LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             Cce-EEEECCCCCCHHHHHHHHHHHH
Confidence            344 5789999999999999999875

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.03  E-value=0.022  Score=55.82  Aligned_cols=26  Identities=23%  Similarity=0.630  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEE
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I   51 (761)
                      |+|+|.||+||||+++.|++. +  +..+
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g--~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-G--YPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T---EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-C--CeEE
Confidence            789999999999999999988 6  4445

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.01  E-value=0.23  Score=56.23  Aligned_cols=36  Identities=11%  Similarity=0.184  Sum_probs=26.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i   56 (761)
                      ..++|.|++|+|||+++++++..+     +..+.+++.+.+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~  177 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF  177 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence            358999999999999999988654     334556665443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=94.99  E-value=0.04  Score=60.40  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=43.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSAL   75 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L   75 (761)
                      .-|+|+||||+|||-+|-.+++.+|  .+|+-++...++..+....+.+.+++++++
T Consensus        66 rgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~RraI  122 (450)
T COG1224          66 RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAI  122 (450)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHhh
Confidence            4799999999999999999999999  577778888887766665555555555555

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.98  E-value=0.14  Score=60.80  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCe----EE----E---e-----------ccccc-CCC-CCcHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW----AR----I---C-----------QDTIN-KGK-SGTKVQCLTSAS   72 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~----~~----I---~-----------~D~i~-~~~-~~~~~~~~~~~~   72 (761)
                      ..-+..++++|++|.||||+|+.|++.+...-    .-    -   |           .|.+. +.. ....++..+.+.
T Consensus        35 gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie  114 (700)
T PRK12323         35 QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLD  114 (700)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHH
Confidence            34567899999999999999999999876200    00    0   0           02221 100 011122222222


Q ss_pred             HHH---H--CCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           73 SAL---K--KGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        73 ~~L---~--~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ...   .  ..+.+|||-.. ++......+++. .+...++.+|........+...+..|-
T Consensus       115 ~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC  175 (700)
T PRK12323        115 KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC  175 (700)
T ss_pred             HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence            111   1  23568888743 444555667777 665556667777666666666665554

>cd01394 radB RadB

Probab=94.98  E-value=0.089  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=28.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ...++++.|+|||||||||.+++...   +....+++.+.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            45799999999999999999988653   34555666543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF05729 NACHT: NACHT domain

Probab=94.96  E-value=0.02  Score=55.11  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +++|.|.||+||||+++.++..+.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            789999999999999999886643

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.033  Score=61.14  Aligned_cols=59  Identities=15%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~   77 (761)
                      .|.=|+|-||||+|||-+|++.+...+..|.++....+-+...+.-..+.+.+.+..+.
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre  242 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELARE  242 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence            45669999999999999999999998877777766555444444444444444443333

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=94.94  E-value=0.053  Score=56.81  Aligned_cols=69  Identities=19%  Similarity=0.278  Sum_probs=40.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      +..++++.|+|||||||||.+++..   .+....+++.+.-.+..........-.+......|+..|+|...
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~   91 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFT   91 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccc
Confidence            4579999999999999999987643   34556666654321000000000001123445667788888743

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.94  E-value=0.092  Score=59.97  Aligned_cols=38  Identities=29%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN   57 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~   57 (761)
                      ..+++++|++|+||||++.+|+..+     +.....++.|..+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            3589999999999999999887543     2456778888754

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.92  E-value=0.14  Score=57.89  Aligned_cols=28  Identities=21%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|+||+||||+|+.+++.+.
T Consensus        36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         36 RVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3466789999999999999999998875

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=94.91  E-value=0.063  Score=58.45  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .+.+|+|+||.|||||-+|-.|+++++  ..+||.|..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~--~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLG--GEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcC--CcEEecchh
Confidence            467999999999999999999999999  667887766

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.90  E-value=0.22  Score=58.61  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+..+++.|++|+||||+|+.+++.+.
T Consensus        37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         37 VHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456789999999999999999998765

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.88  E-value=0.17  Score=59.02  Aligned_cols=70  Identities=23%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHHC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKS-----------------GTKVQCLTSASSALKK   77 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~~   77 (761)
                      ..+|+|+|++|+||||++.+|+..+     +..+..++.|.++-+..                 .+... +..+.+.+..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~-L~~aL~~l~~  428 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES-LLDLLERLRD  428 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH-HHHHHHHhcc
Confidence            4689999999999999999988643     23466778877642210                 01111 2233344455


Q ss_pred             CCcEEEeCCCCCH
Q 004319           78 GKSVFLDRCNLER   90 (761)
Q Consensus        78 g~~VIID~tn~~~   90 (761)
                      .+.||||...+..
T Consensus       429 ~DLVLIDTaG~s~  441 (559)
T PRK12727        429 YKLVLIDTAGMGQ  441 (559)
T ss_pred             CCEEEecCCCcch
Confidence            6678888876654

>PRK08181 transposase; Validated

Probab=94.88  E-value=0.056  Score=58.00  Aligned_cols=102  Identities=16%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH-HHHHHHHHHHHCCCcEEEeCCC---CCHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRCN---LEREQR   93 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~-~~~~~~~~~L~~g~~VIID~tn---~~~~~R   93 (761)
                      .-++|+|+||+|||.+|..++...   +..+.+++...+.+....... .-.....+.+..-..+|||...   .+....
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~  186 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAET  186 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHH
Confidence            359999999999999999987543   434444554333211000000 0112233455666778999843   334444


Q ss_pred             HHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319           94 TDFVKL--GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        94 ~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ..+.++  ..+.-...+|--+.+...+..+.
T Consensus       187 ~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~  217 (269)
T PRK08181        187 SVLFELISARYERRSILITANQPFGEWNRVF  217 (269)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCHHHHHHhc
Confidence            555555  22222344555677777665544

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=94.87  E-value=0.12  Score=62.24  Aligned_cols=109  Identities=13%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---EEe--------------ccccc-CCC-CCcHHHHHHHHHHHH---
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWA---RIC--------------QDTIN-KGK-SGTKVQCLTSASSAL---   75 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~---~I~--------------~D~i~-~~~-~~~~~~~~~~~~~~L---   75 (761)
                      .-+..++|+|++|+||||+++.|++.++....   .-|              .|.+. +.. ....+++.+.+....   
T Consensus        36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P  115 (830)
T PRK07003         36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP  115 (830)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcc
Confidence            34678899999999999999999998752100   000              01111 000 011122222222211   


Q ss_pred             --HCCCcEEEeCCCC-CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           76 --KKGKSVFLDRCNL-EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 --~~g~~VIID~tn~-~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                        ...+.+|||-... +......+++. .+..-++.+|+.......+..-+..|-
T Consensus       116 ~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC  170 (830)
T PRK07003        116 VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC  170 (830)
T ss_pred             ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence              1235688988443 33444566666 555455666666665555555555454

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=94.86  E-value=0.04  Score=61.12  Aligned_cols=53  Identities=15%  Similarity=0.324  Sum_probs=37.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASS   73 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~   73 (761)
                      ..|+|.|+||+|||.+|-.++++++  .+|..++.-+++..+....+.+.+.+++
T Consensus        51 r~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~Rr  105 (398)
T PF06068_consen   51 RAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFRR  105 (398)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHHC
T ss_pred             cEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHHH
Confidence            5789999999999999999999999  6788888888876665544444444443

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=0.089  Score=60.27  Aligned_cols=126  Identities=20%  Similarity=0.308  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-   99 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-   99 (761)
                      =|+|.||||+|||-+||++-+.++ +.-.+++.-.+-+...+..++-++.          ...|+       -++|+.+ 
T Consensus       258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~----------LFaDA-------EeE~r~~g  320 (744)
T KOG0741|consen  258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRK----------LFADA-------EEEQRRLG  320 (744)
T ss_pred             eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHH----------HHHhH-------HHHHHhhC
Confidence            389999999999999999999887 3334556555544444443332211          11122       3456556 


Q ss_pred             CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEc---CChhhHHHHHHH
Q 004319          100 GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLC---QNENDVQAALDT  175 (761)
Q Consensus       100 ~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv---~~~~ei~~~l~~  175 (761)
                      ...+.  ++|.||-=+.+|.+|=..+...      .+...++++.+.+..--   |....|.++   +..+-+++++.+
T Consensus       321 ~~SgL--HIIIFDEiDAICKqRGS~~g~T------GVhD~VVNQLLsKmDGV---eqLNNILVIGMTNR~DlIDEALLR  388 (744)
T KOG0741|consen  321 ANSGL--HIIIFDEIDAICKQRGSMAGST------GVHDTVVNQLLSKMDGV---EQLNNILVIGMTNRKDLIDEALLR  388 (744)
T ss_pred             ccCCc--eEEEehhhHHHHHhcCCCCCCC------CccHHHHHHHHHhcccH---HhhhcEEEEeccCchhhHHHHhcC
Confidence            55544  4556666667787765444432      57899999998876422   223345555   234666666654

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=94.85  E-value=0.019  Score=59.45  Aligned_cols=68  Identities=18%  Similarity=0.187  Sum_probs=37.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      +..++++.|+||||||+|+.+++...    +....+++.+.-.+.........--.+......|+..++|..
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~   89 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF   89 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence            45799999999999999999976432    666667775432100000000000123445556667777763

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK09183 transposase/IS protein; Provisional

Probab=94.84  E-value=0.074  Score=56.71  Aligned_cols=102  Identities=12%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHH--HHHHHHHHHHHCCCcEEEeCCCC---CHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKV--QCLTSASSALKKGKSVFLDRCNL---EREQ   92 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~--~~~~~~~~~L~~g~~VIID~tn~---~~~~   92 (761)
                      ..++|+|+||+|||++|..+...   .+..+..++...+.........  .......+.+..-..+|||...+   ....
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~  182 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEE  182 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChHH
Confidence            46889999999999999998654   2333444443222110000000  01112222234445689998653   3344


Q ss_pred             HHHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319           93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ...+..+  ..+.-...+|--+.+.+.+.+..
T Consensus       183 ~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~  214 (259)
T PRK09183        183 ANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF  214 (259)
T ss_pred             HHHHHHHHHHHHhcCcEEEecCCCHHHHHHHh
Confidence            4345554  22222234555677777666554

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=94.84  E-value=0.06  Score=55.76  Aligned_cols=35  Identities=29%  Similarity=0.638  Sum_probs=26.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~   53 (761)
                      ...++++.|+||+|||||+.+++..   .+.....++.
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~   56 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT   56 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4579999999999999999987632   2334555554

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=94.84  E-value=0.28  Score=56.48  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      -++|.|++|+|||++++.++..+   +..+..++.+.+
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            47899999999999999998754   344555665443

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=94.83  E-value=0.12  Score=55.82  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+++.|+||+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         40 HLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36999999999999999998875

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=94.82  E-value=0.27  Score=56.51  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i   56 (761)
                      -++|.|+||+|||++++.++....     ..+.+++.+.+
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~  189 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF  189 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence            589999999999999999987652     33445555443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.81  E-value=0.23  Score=51.56  Aligned_cols=122  Identities=14%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccccc--------C-------------------------CCCCc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTIN--------K-------------------------GKSGT   63 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~--------~-------------------------~~~~~   63 (761)
                      .++|.|++|+|||.+..++....     +..+.+++.+.+.        +                         +....
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~  115 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT  115 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence            47899999999999999986542     2345566543321        0                         00011


Q ss_pred             HHHHHHHHHHHHHCCCcEEEeC-CCCCH--HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHH
Q 004319           64 KVQCLTSASSALKKGKSVFLDR-CNLER--EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV  140 (761)
Q Consensus        64 ~~~~~~~~~~~L~~g~~VIID~-tn~~~--~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~v  140 (761)
                      ...++..+......|+.+|+-+ .....  ....+++..-..|.   ++-+..|.+....++.++.....+  ..+++++
T Consensus       116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl---~~~l~~pd~~~r~~il~~~a~~~~--~~l~~~v  190 (219)
T PF00308_consen  116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL---VVELQPPDDEDRRRILQKKAKERG--IELPEEV  190 (219)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE---EEEE----HHHHHHHHHHHHHHTT----S-HHH
T ss_pred             HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc---hhhcCCCCHHHHHHHHHHHHHHhC--CCCcHHH
Confidence            1234455555666777776654 11111  11222222212333   455666666555555544332221  2477777


Q ss_pred             HHHHHhhh
Q 004319          141 VNRMLQKK  148 (761)
Q Consensus       141 I~r~~~~~  148 (761)
                      +.-+.+.+
T Consensus       191 ~~~l~~~~  198 (219)
T PF00308_consen  191 IEYLARRF  198 (219)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77777654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.80  E-value=0.19  Score=59.92  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..++++|++|+||||+|+.+++.++
T Consensus        35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         35 RLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3467899999999999999999999876

>PF13245 AAA_19: Part of AAA domain

Probab=94.79  E-value=0.028  Score=48.57  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=17.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      ..++++.|+|||||||++.++..
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~   32 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIA   32 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45788899999999965555443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=94.77  E-value=0.033  Score=61.51  Aligned_cols=39  Identities=28%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      .+.+.+|.++|+||||||||+..|...+   +....+++.|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            5678899999999999999999976554   34566666665

>cd04163 Era Era subfamily

Probab=94.77  E-value=0.15  Score=48.25  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ...|+++|++|||||||.+++...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.76  E-value=0.066  Score=59.09  Aligned_cols=101  Identities=9%  Similarity=0.102  Sum_probs=57.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC----CCcHHHHHHHHHHHHHCCCcEEEeCCC---CCH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK----SGTKVQCLTSASSALKKGKSVFLDRCN---LER   90 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~----~~~~~~~~~~~~~~L~~g~~VIID~tn---~~~   90 (761)
                      .-++|.|++|+|||+++.+++..+   +..+..++.+.+.+..    ....... ....+.+..-..+|||...   .+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~-~~~~~~l~~~DLLIIDDlG~e~~t~  262 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKEL-EEVYDLLINCDLLIIDDLGTEKITE  262 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhH-HHHHHHhccCCEEEEeccCCCCCCH
Confidence            569999999999999999998764   3445555554442110    0000000 1113555555778999842   334


Q ss_pred             HHHHHHHHh--CCCC-ceEEEEEEeCCHHHHHHHH
Q 004319           91 EQRTDFVKL--GGPE-VDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        91 ~~R~~~~~l--~~~~-~~v~vV~Ld~p~e~~~~R~  122 (761)
                      .....+..+  ..+. -...+|--+.+.+.+..+.
T Consensus       263 ~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~  297 (329)
T PRK06835        263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY  297 (329)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence            445555555  2211 1234566677777665544

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.75  E-value=0.12  Score=52.01  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccc---cCC--CCCcHHHHHHHHHHHHHCCCcEEEeC--CCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTI---NKG--KSGTKVQCLTSASSALKKGKSVFLDR--CNLE   89 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i---~~~--~~~~~~~~~~~~~~~L~~g~~VIID~--tn~~   89 (761)
                      +-.++.|+|++||||||+.+.++....  .....++.-.+   .+.  ..+-..+.+..++..+.....+|+|-  .+++
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD  103 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD  103 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence            345899999999999999999886432  11222221111   111  11122334455555566677788887  5666


Q ss_pred             HHHHHHHHHh
Q 004319           90 REQRTDFVKL   99 (761)
Q Consensus        90 ~~~R~~~~~l   99 (761)
                      ...+..+.++
T Consensus       104 ~~~~~~l~~~  113 (177)
T cd03222         104 IEQRLNAARA  113 (177)
T ss_pred             HHHHHHHHHH
Confidence            6777766555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=94.75  E-value=0.27  Score=51.16  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=27.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~   53 (761)
                      .-.+++|.|+||+|||||+..++...    +.+..+++.
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~   50 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL   50 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            34699999999999999999876542    555666664

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=94.70  E-value=0.051  Score=57.62  Aligned_cols=29  Identities=28%  Similarity=0.557  Sum_probs=24.6

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ....|.+|+++|..|||||||.++|-..+
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl   43 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHL   43 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence            34578899999999999999999987554

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.68  E-value=0.2  Score=49.44  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.++...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=94.68  E-value=0.16  Score=53.56  Aligned_cols=29  Identities=21%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~   46 (761)
                      ..|.-++++|++||||||+...|...+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcc
Confidence            35667899999999999999999877663

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.66  E-value=0.17  Score=59.19  Aligned_cols=28  Identities=18%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|++|+||||+|+.+++.++
T Consensus        36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         36 YLHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4566899999999999999999999875

>PRK06526 transposase; Provisional

Probab=94.65  E-value=0.045  Score=58.22  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=52.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcH-HHHHHHHHHHHHCCCcEEEeCCCCC---HHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCNLE---REQ   92 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~-~~~~~~~~~~L~~g~~VIID~tn~~---~~~   92 (761)
                      +.-++|+|+||+|||++|..+....   +..+..++...+.+...... ..........+..-..+|||...+.   ...
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~  177 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEA  177 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHH
Confidence            3468999999999999999987653   32222233222210000000 0001111223444456899986543   444


Q ss_pred             HHHHHHh--CCCCceEEEEEEeCCHHHHHHHH
Q 004319           93 RTDFVKL--GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        93 R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ...+..+  ..+.-...++.-+.|.+.+.+..
T Consensus       178 ~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~  209 (254)
T PRK06526        178 ANLFFQLVSSRYERASLIVTSNKPFGRWGEVF  209 (254)
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHc
Confidence            4444444  22222234566677777655443

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=94.65  E-value=0.033  Score=55.84  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++.++.++|++||||||+++++...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            456899999999999999999987654

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=94.65  E-value=0.038  Score=52.33  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=24.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +...+|+|.|.-|||||||++.+++.++
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4457999999999999999999999987

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=0.082  Score=57.13  Aligned_cols=57  Identities=12%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL   75 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L   75 (761)
                      .|..++|.|+||.|||-+|+.+++..+..+..+....+-++..++...+++...+.+
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA  221 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA  221 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH
Confidence            578999999999999999999999999888777877777777776655554433333

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=94.63  E-value=0.05  Score=54.06  Aligned_cols=33  Identities=24%  Similarity=0.528  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS---SARPWARICQD   54 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D   54 (761)
                      +++|.|+||+|||+|+.+++..   .+....+++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            4789999999999999987653   34556666653

A related protein is found in archaea.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.63  E-value=0.32  Score=57.71  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCC-------eE------E------Eeccccc-CCC-CCcHHHH---HHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP-------WA------R------ICQDTIN-KGK-SGTKVQC---LTSASS   73 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~-------~~------~------I~~D~i~-~~~-~~~~~~~---~~~~~~   73 (761)
                      .-+..+++.|++|+||||+|+.+++.+.-.       +-      .      -+.|.+. ++. ....+.+   ...+..
T Consensus        33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~  112 (584)
T PRK14952         33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY  112 (584)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence            356788999999999999999999886510       00      0      0112221 111 1111222   222211


Q ss_pred             H--HHCCCcEEEeCC-CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           74 A--LKKGKSVFLDRC-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        74 ~--L~~g~~VIID~t-n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .  ....+.+|||.. .++...-..+++. .+..-.+++|++....+.+..-+..|.
T Consensus       113 ~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc  169 (584)
T PRK14952        113 APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT  169 (584)
T ss_pred             hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc
Confidence            1  134567899985 3444555566666 665556677776666666666666664

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.027  Score=58.46  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK   60 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~   60 (761)
                      .-.+..|+||.||||||++..|+-..+  |.+...+.+.+|.
T Consensus        29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~Ge   68 (251)
T COG0396          29 EGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGE   68 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEECCc
Confidence            456899999999999999999987655  6556666665554

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.62  E-value=0.22  Score=57.81  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC-------CeEE----------Eeccccc-CCC-CCcHHHH---HHHHHHH--
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-------PWAR----------ICQDTIN-KGK-SGTKVQC---LTSASSA--   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-------~~~~----------I~~D~i~-~~~-~~~~~~~---~~~~~~~--   74 (761)
                      -+.-+++.|++|+||||+|+.+++.++-       ++-.          ...|.+. +.. ....+.+   ++.+...  
T Consensus        34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~  113 (491)
T PRK14964         34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPI  113 (491)
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccc
Confidence            3567999999999999999999986531       0000          0112221 110 0111222   2221111  


Q ss_pred             HHCCCcEEEeCCC-CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCN-LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn-~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ....+.+|||... ++...-..+++. .+..-.+.+|+.....+-+...+..|-.
T Consensus       114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~  168 (491)
T PRK14964        114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQ  168 (491)
T ss_pred             cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhe
Confidence            1234678999843 344455566666 5555556666666656666666766654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.62  E-value=0.15  Score=59.49  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=25.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+.+++++|+||+||||+|+.+++.+.
T Consensus        33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         33 GRLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34567899999999999999999998764

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=94.60  E-value=0.26  Score=49.47  Aligned_cols=96  Identities=13%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------------CC--C--------------------CcH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GK--S--------------------GTK   64 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------------~~--~--------------------~~~   64 (761)
                      ||-|.+..|||++|+|++|++.++  +..++.+.+.+               .+  .                    ...
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg--~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLG--YPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD   78 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT----EE-HHHHHHCT------------SS-HHH--HH---HHS-------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcC--CccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence            688999999999999999999999  55577644410               00  0                    001


Q ss_pred             HHHH---HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           65 VQCL---TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        65 ~~~~---~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+.   ..+...+....++||-+      .-..|+ ++... ++.-|+|..|.+...+|+.+|..
T Consensus        79 ~~~~~~~~~~i~~la~~~~~Vi~G------R~a~~i-l~~~~-~~l~V~i~A~~~~Rv~ri~~~~~  136 (179)
T PF13189_consen   79 DKIFRAQSEIIRELAAKGNCVIVG------RCANYI-LRDIP-NVLHVFIYAPLEFRVERIMEREG  136 (179)
T ss_dssp             -HHHHHHHHHHHHHHH---EEEES------TTHHHH-TTT-T-TEEEEEEEE-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEe------cCHhhh-hCCCC-CeEEEEEECCHHHHHHHHHHHcC
Confidence            1111   22333443334555556      122221 13322 45677888999999999999964

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=94.60  E-value=0.19  Score=61.91  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCC-------eEE------------Eeccccc-CC-CCCcHHHHHHHHHHH---
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARP-------WAR------------ICQDTIN-KG-KSGTKVQCLTSASSA---   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~-------~~~------------I~~D~i~-~~-~~~~~~~~~~~~~~~---   74 (761)
                      -+..+++.|++|+||||+|+.|++.+.-.       +-.            -+.|.+. ++ .....+++.+...+.   
T Consensus        36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~  115 (824)
T PRK07764         36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFA  115 (824)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhc
Confidence            45678999999999999999999987510       000            0011111 11 111122222221111   


Q ss_pred             --HHCCCcEEEeC-CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 --LKKGKSVFLDR-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 --L~~g~~VIID~-tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                        ....+.+|||- -.++...-..++++ .+..-.+++|++....+.+..-+..|-.
T Consensus       116 p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~  172 (824)
T PRK07764        116 PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH  172 (824)
T ss_pred             hhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence              12345688886 34455555667777 6666666777766666656655666643

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.58  E-value=0.051  Score=54.31  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC----CeEEEecccccC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR----PWARICQDTINK   58 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~I~~D~i~~   58 (761)
                      ..++++||+|+|||.+|+.|++.+..    ++..++.-.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            47899999999999999999998873    666677655543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.58  E-value=0.043  Score=50.68  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -.++.|+|++||||||+++.+.  .+  -..++.|++
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~--~G--~i~~~g~di   47 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI--KR--KHRLVGDDN   47 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh--CC--eEEEeeEeH
Confidence            3689999999999999999987  22  234555544

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=94.56  E-value=0.038  Score=58.63  Aligned_cols=70  Identities=19%  Similarity=0.257  Sum_probs=42.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ++-.++++.|.||||||+|+.+++..   .+.+...|+.+.-.........+..-........|...|+|...
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~   93 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL   93 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence            34579999999999999999997644   24556667665432111111111111223556778888888833

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.049  Score=65.40  Aligned_cols=37  Identities=22%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      |.=++|+||||+|||-+|++++.+.+.+|.-++.-++
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF  380 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF  380 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence            4458999999999999999999999988876666444

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.51  E-value=0.21  Score=61.30  Aligned_cols=28  Identities=14%  Similarity=0.278  Sum_probs=25.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..++++|+||+||||+|+.+++.++
T Consensus        36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         36 RLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            4567889999999999999999999876

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=94.50  E-value=0.031  Score=53.25  Aligned_cols=30  Identities=37%  Similarity=0.643  Sum_probs=22.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      |+|.|+||.||||+++.+++..+..+.+|.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq   31 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ   31 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence            689999999999999999999997777663

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.50  E-value=0.028  Score=55.36  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ....+.+++|.|++|+||||+.+++...+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445678999999999999999999876654

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.056  Score=61.90  Aligned_cols=38  Identities=24%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -|.=|+|+||||.|||-+|++++-+.+.+|.+.+..++
T Consensus       336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF  373 (752)
T KOG0734|consen  336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF  373 (752)
T ss_pred             CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence            46679999999999999999999999988876665444

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=94.45  E-value=0.069  Score=60.52  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=29.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-~~I~~D~i   56 (761)
                      ....|+|+|.+||||||++++|++.++..+ ..+.++.+
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~  256 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV  256 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence            456899999999999999999999988443 33444544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.42  E-value=0.16  Score=57.72  Aligned_cols=71  Identities=17%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEecccccCCCC-----------------CcHHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTINKGKS-----------------GTKVQCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~~~~~-----------------~~~~~~~~~~~~~L~   76 (761)
                      ...++.|+|++|+||||+..+|+..+    + .....+..|.++-+..                 .+... ...+...+.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~d-l~~al~~l~  268 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIAD-LQLMLHELR  268 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHH-HHHHHHHhc
Confidence            45699999999999999999998653    2 3344566666542211                 11111 123344566


Q ss_pred             CCCcEEEeCCCCCH
Q 004319           77 KGKSVFLDRCNLER   90 (761)
Q Consensus        77 ~g~~VIID~tn~~~   90 (761)
                      ....++||......
T Consensus       269 ~~d~VLIDTaGrsq  282 (420)
T PRK14721        269 GKHMVLIDTVGMSQ  282 (420)
T ss_pred             CCCEEEecCCCCCc
Confidence            66778999855544

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.41  E-value=0.14  Score=58.63  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             hhcccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           13 DEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        13 ~~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +....+.|.|+.++||||+||||+.+.|.+.+.
T Consensus        62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CcccCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            344567888999999999999999999988754

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=94.37  E-value=0.065  Score=56.06  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=25.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      +..++++.|+||+||||||.+++...   +....+++.+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            34699999999999999987765433   3344555543

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.37  E-value=0.28  Score=57.27  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=24.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+..++++|+||+||||+|+.+++.++
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            356799999999999999999999876

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=94.34  E-value=0.12  Score=56.20  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=29.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|+|+||+|||||.+|-.|++..+   .+||.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~~---eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGKA---EIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC---cEEeccHH
Confidence            34899999999999999999999843   67888766

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=94.34  E-value=0.029  Score=63.09  Aligned_cols=24  Identities=42%  Similarity=0.701  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      =|++.|+||+||||||++|++-+.
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHHH
Confidence            389999999999999999987654

>PTZ00202 tuzin; Provisional

Probab=94.33  E-value=0.2  Score=56.93  Aligned_cols=34  Identities=26%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      .|.+++|+|++|+||||+++.+....+....+++
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vN  318 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVD  318 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcCCceEEEEC
Confidence            4569999999999999999999988774333333

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.32  E-value=0.48  Score=52.46  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=58.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec-c--ccc--C--CC---------CC-cHHHHHHHHHHHHHCCCcEE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ-D--TIN--K--GK---------SG-TKVQCLTSASSALKKGKSVF   82 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~-D--~i~--~--~~---------~~-~~~~~~~~~~~~L~~g~~VI   82 (761)
                      ...|+++|++|||||||.+.|....+....++.. |  ++.  .  +.         .+ ......+.+..+|+..-.+|
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I  239 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI  239 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence            4579999999999999999999877632222221 1  111  0  00         00 01123356677788777766


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           83 LDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      +=+--...+...-+..+ ..+..-+..+.-+- ......|+...-
T Consensus       240 ivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s-~~~ai~Rl~~~~  283 (332)
T PRK13900        240 IVGELRGAEAFSFLRAINTGHPGSISTLHADS-PAMAIEQLKLMV  283 (332)
T ss_pred             EEEecCCHHHHHHHHHHHcCCCcEEEEEecCC-HHHHHHHHHHHH
Confidence            65655555543333333 33322234444333 344667876543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.32  E-value=0.048  Score=56.19  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++..+..|+||+|||||||.+.+-...
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            456799999999999999999886543

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=94.28  E-value=0.072  Score=64.05  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      =|+|+|+||+||||+++.++...+.++..++...+
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~  221 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF  221 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence            49999999999999999999999977776766544

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=94.26  E-value=0.31  Score=57.83  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i   56 (761)
                      .++|.|.+|+|||.|+..+....     +..+.+++.+.+
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef  355 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF  355 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            48999999999999999988754     234455655443

>PRK04328 hypothetical protein; Provisional

Probab=94.25  E-value=0.11  Score=55.02  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      ...++++.|+||||||+||.+++..   .+....+++.+.-.+..........-.+...+..++..|+|..
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~   92 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAF   92 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence            5679999999999999999987643   2345666665442110000000000113445566778888874

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.24  E-value=0.28  Score=47.62  Aligned_cols=79  Identities=28%  Similarity=0.290  Sum_probs=45.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEecccccCC--------------CCCcHHHHHHHHHHHHHCCCcEEEe
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQDTINKG--------------KSGTKVQCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~D~i~~~--------------~~~~~~~~~~~~~~~L~~g~~VIID   84 (761)
                      .++.|+|++|||||||.+.+...+..  ....++...+...              ..+-..+....+...+.....+|+|
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD  105 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD  105 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            68999999999999999999865431  1122222111110              0001122234444555566778888


Q ss_pred             C--CCCCHHHHHHHHHh
Q 004319           85 R--CNLEREQRTDFVKL   99 (761)
Q Consensus        85 ~--tn~~~~~R~~~~~l   99 (761)
                      -  .+++...+..+.++
T Consensus       106 Ep~~~lD~~~~~~l~~~  122 (157)
T cd00267         106 EPTSGLDPASRERLLEL  122 (157)
T ss_pred             CCCcCCCHHHHHHHHHH
Confidence            7  45556666666554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.23  E-value=0.086  Score=51.22  Aligned_cols=22  Identities=27%  Similarity=0.664  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      |+|+|+.||||||++++|....
T Consensus         4 imliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    4 IMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            8999999999999999997643

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.22  E-value=0.33  Score=47.75  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCC--------CC-----Cc--HHHHHHHHHHHHHCCCcEE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKG--------KS-----GT--KVQCLTSASSALKKGKSVF   82 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~--------~~-----~~--~~~~~~~~~~~L~~g~~VI   82 (761)
                      -.++.|+|++|||||||.+.++....  ..-..++...+...        ..     .+  ..+.+..++..+...+.+|
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill  105 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI  105 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence            35899999999999999999975533  11222332121110        00     01  1222344444455556678


Q ss_pred             EeC--CCCCHHHHHHHHHh
Q 004319           83 LDR--CNLEREQRTDFVKL   99 (761)
Q Consensus        83 ID~--tn~~~~~R~~~~~l   99 (761)
                      +|-  .+++...+..+.++
T Consensus       106 lDEP~~~LD~~~~~~l~~~  124 (163)
T cd03216         106 LDEPTAALTPAEVERLFKV  124 (163)
T ss_pred             EECCCcCCCHHHHHHHHHH
Confidence            877  45666777766665

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=0.063  Score=59.17  Aligned_cols=55  Identities=11%  Similarity=0.286  Sum_probs=41.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS   72 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~   72 (761)
                      ..|.-|+|.||||+|||-+|++++++.+..+.-++...+-+.|+++.....+++.
T Consensus       125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvF  179 (386)
T KOG0737|consen  125 RPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVF  179 (386)
T ss_pred             cCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHH
Confidence            3677899999999999999999999999776555665665666665555544433

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=94.17  E-value=0.51  Score=49.50  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH----HHHHHHHHH-HCCCcEEEeCCCCCHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ----CLTSASSAL-KKGKSVFLDRCNLERE   91 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~----~~~~~~~~L-~~g~~VIID~tn~~~~   91 (761)
                      .+.|.||++-|..||||....++|...+.-....+..  +.  . .+.++    .+-..-+.| ..|+..|.|++-+...
T Consensus        28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~--~~--~-pt~eE~~~p~lwRfw~~lP~~G~i~IF~rSwY~~~  102 (230)
T TIGR03707        28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVA--LP--K-PSDRERTQWYFQRYVQHLPAAGEIVLFDRSWYNRA  102 (230)
T ss_pred             cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEe--CC--C-CCHHHHcChHHHHHHHhCCCCCeEEEEeCchhhhH
Confidence            3468999999999999999999999988743333322  10  0 01111    112222223 5677788888655541


Q ss_pred             -------------HHH------HHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319           92 -------------QRT------DFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (761)
Q Consensus        92 -------------~R~------~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~  130 (761)
                                   ...      .|-+. ...|+.+.=+||.++.++..+|+.+|...+.
T Consensus       103 lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~  161 (230)
T TIGR03707       103 GVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPL  161 (230)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence                         111      22233 6679989999999999999999999987653

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.13  E-value=0.15  Score=58.97  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----C-CCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----A-RPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~-~~~~~I~~D~i~   57 (761)
                      ++.+++|+|++|+||||.+.+|+..+    + ..+..+..|..+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            45799999999999999999998654    2 245667777753

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=94.12  E-value=0.049  Score=61.84  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      .-|+|.||||+|||++|+.|++.++.++..++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da  149 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA  149 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence            469999999999999999999988866655543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00101 ureG urease accessory protein UreG

Probab=94.10  E-value=0.07  Score=54.60  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      |..|.|+|++||||||+.+++...+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56799999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.10  E-value=0.29  Score=50.57  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      ...++|+|++|+|||++|+.+....   +..+.+++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~   78 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA   78 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence            4578999999999999999998764   234555554

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.09  E-value=0.036  Score=50.78  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      |+|.|+||+|||++|+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999887654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=94.08  E-value=0.057  Score=63.11  Aligned_cols=31  Identities=16%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR   46 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~   46 (761)
                      ......|++|.|||||||||..+.|+++++.
T Consensus        41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3344569999999999999999999999983

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=94.07  E-value=0.46  Score=52.38  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|+||+||||+|+.+++.+.
T Consensus        34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        34 RIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456889999999999999999998864

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK09169 hypothetical protein; Validated

Probab=94.04  E-value=0.13  Score=67.51  Aligned_cols=96  Identities=10%  Similarity=-0.015  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--------------CCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------KGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--------------~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      -|+|+|.+|+||||+++.|+..++.  ..++.|...              +|  ..++.....+...+.  ..+||..-.
T Consensus      2112 aIvLIG~MGaGKTTIGr~LA~~Lg~--~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr--~~vVLSTGG 2185 (2316)
T PRK09169       2112 ARRIEREVGPLLQALLQKLAGGLRV--DKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR--WEVVLPAEG 2185 (2316)
T ss_pred             ccceeeCCCCCHhHHHHHHHHHhCC--CccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc--CCeEEeCCC
Confidence            6899999999999999999999994  446655442              22  223333355555554  466665533


Q ss_pred             CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        88 ~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      +.......+..++..|+   +||++.+.+++.+|+....
T Consensus      2186 Gav~~~enr~~L~~~Gl---vV~L~an~~tl~~Rty~g~ 2221 (2316)
T PRK09169       2186 FGAAVEQARQALGAKGL---RVMRINNGFAAPDTTYAGL 2221 (2316)
T ss_pred             CcccCHHHHHHHHHCCE---EEEEECCHHHHHHHhccCC
Confidence            33322222222255676   8999999999998886443

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=94.02  E-value=0.081  Score=56.62  Aligned_cols=62  Identities=21%  Similarity=0.341  Sum_probs=43.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      =+++.||||-||||+|.-++.+++..+...+.-.+.      ...=+..+...|..|..+.||-.+.-
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~Le~~DVLFIDEIHrl  115 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNLEEGDVLFIDEIHRL  115 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcCCcCCeEEEehhhhc
Confidence            589999999999999999999999666555554442      11112344455777777788774443

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=94.00  E-value=0.19  Score=55.33  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=26.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~   53 (761)
                      .-.++.+.|+|||||||||-.++..   .+....+|+.
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~   91 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA   91 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence            3469999999999999999998743   3445666665

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.00  E-value=0.3  Score=52.50  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ++..++++|++|+||||+++.++..+   +.....++.|..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~  114 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  114 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            34689999999999999999987664   234556777655

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=93.98  E-value=0.043  Score=54.73  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      |+|+|.||+||||+.+++.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999998876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG4240 Predicted kinase [General function prediction only]

Probab=93.98  E-value=0.11  Score=54.04  Aligned_cols=41  Identities=27%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---C-CCeEEEecccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---A-RPWARICQDTI   56 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~-~~~~~I~~D~i   56 (761)
                      +.+.|.++.++|+-||||||++..|...+   + .....++.|++
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl   90 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL   90 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence            45679999999999999999998865332   2 34556777777

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=93.98  E-value=0.047  Score=49.94  Aligned_cols=22  Identities=18%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      |+++|.+|||||||.++|....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            7899999999999999998654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.32  Score=57.73  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFL   83 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VII   83 (761)
                      ++=|+|-|+||||||.+|.+++...+..+.-+-.-++-+...+..++..+.+..+.+.-+.+|+
T Consensus       701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiL  764 (952)
T KOG0735|consen  701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCIL  764 (952)
T ss_pred             ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEE
Confidence            4569999999999999999999998844444444555555566667766666666665566554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.92  E-value=0.047  Score=57.65  Aligned_cols=26  Identities=19%  Similarity=0.528  Sum_probs=23.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +-+++|+|++|+||||+++.+...+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45889999999999999999998765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13768 GTPase; Provisional

Probab=93.91  E-value=0.068  Score=56.73  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ++.++++.|++||||||++..++..+   +.....++.|-
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            35689999999999999998877554   45566676553

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=93.90  E-value=0.42  Score=50.69  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=25.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~   53 (761)
                      -.+++|.|+||+|||||+.+++...    +....+++.
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            3589999999999999999876542    444555664

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type

Probab=93.89  E-value=0.12  Score=54.30  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChh
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA  612 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~  612 (761)
                      .|+..|..+..+++|+|+  ..+.|+|+||- ..|+.+.
T Consensus        52 ~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt-~rIsGIE   87 (250)
T TIGR00672        52 SPCAEVKPNAGYVVLKDL--NGPLQYLLMPT-YRINGTE   87 (250)
T ss_pred             CCcceEcCCCCeEEEeCC--CCCceeEEeec-cccCCcc
Confidence            467777778899999999  89999999999 4676664

Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.069  Score=63.13  Aligned_cols=98  Identities=21%  Similarity=0.407  Sum_probs=58.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CCCCCcHHHHH-HHHHHHHH----CCCcEEEeC----
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGKSGTKVQCL-TSASSALK----KGKSVFLDR----   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~~~~~~~~~~-~~~~~~L~----~g~~VIID~----   85 (761)
                      -.|+-++||||.|||++|+.+++.+++.|.+++-.-+.     +|.+.++--.+ -.+.++|+    .+-.++||-    
T Consensus       438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKl  517 (906)
T KOG2004|consen  438 GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKL  517 (906)
T ss_pred             CcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence            35889999999999999999999999999999853332     23322221111 12233343    233467764    


Q ss_pred             -CCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHH
Q 004319           86 -CNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKL  117 (761)
Q Consensus        86 -tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~  117 (761)
                       ..+.-+--..++++  -+.+..+.=.|||+|.++
T Consensus       518 G~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL  552 (906)
T KOG2004|consen  518 GSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL  552 (906)
T ss_pred             CCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence             11222233345554  445555555677777665

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=93.85  E-value=0.063  Score=52.53  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .=++|+|++|+||||+|..|.+. +  +..++.|.+
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~~-g--~~lvaDD~v   47 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIKR-G--HRLVADDRV   47 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-C--CeEEECCEE
Confidence            34899999999999999998875 3  556666655

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=93.84  E-value=0.079  Score=57.65  Aligned_cols=41  Identities=29%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ..+.+.+|.++|+||||||||+..+...+   +..+.+++.|..
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~   73 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS   73 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            34467789999999999999999987654   345566666643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional

Probab=93.80  E-value=0.13  Score=53.96  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD  613 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d  613 (761)
                      .|+..|..+..+++|+|+  ..+.|+|+||- ..|+.+.+
T Consensus        53 ~PC~~Vd~~~gyvvlKD~--~Gp~qyLLiPt-~rIsGIEs   89 (252)
T PRK05471         53 APCAEVDPQAGYVLLKDR--NGPLQYLLMPT-YRISGIES   89 (252)
T ss_pred             CCCeeEccCCCeEEEecC--CCCcceEEeec-ccccCccC
Confidence            467788788899999987  78899999999 46766643

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.79  E-value=0.44  Score=48.48  Aligned_cols=26  Identities=31%  Similarity=0.517  Sum_probs=22.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-..++|+|++|||||||.+-+....
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhh
Confidence            44689999999999999999987653

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=93.77  E-value=0.11  Score=53.69  Aligned_cols=54  Identities=26%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             CCCccchhhhhhhhccc---CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319            1 MDTDIDDTCKAKDEEKK---WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus         1 m~~~~~~~~~~~~~~~~---~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      |+..+....+.-.....   +.-.++.+.|+||+||||||.+++...   +....+++.+
T Consensus         1 ~~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361          1 MDERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            55555555553333222   245799999999999999999987532   4455566655

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=93.70  E-value=0.58  Score=53.79  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEeccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDT   55 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~   55 (761)
                      -++|.|+||+|||+++.+++..+     +..+.+++.+.
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~  170 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK  170 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence            49999999999999999988764     22345555544

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=93.66  E-value=0.72  Score=46.25  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|++|+||||+|+.+++.+.
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            3467899999999999999999988753

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.66  E-value=0.64  Score=55.61  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=24.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+.-+++.|++|+||||+|+.+++.+.
T Consensus        37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~   63 (620)
T PRK14954         37 VGHGYIFSGLRGVGKTTAARVFAKAVN   63 (620)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999998876

>PF13479 AAA_24: AAA domain

Probab=93.65  E-value=0.16  Score=52.45  Aligned_cols=22  Identities=41%  Similarity=0.809  Sum_probs=19.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHV   40 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L   40 (761)
                      ++.-++|.|+||+||||||..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            4567999999999999999988

>CHL00206 ycf2 Ycf2; Provisional

Probab=93.63  E-value=0.11  Score=67.41  Aligned_cols=40  Identities=15%  Similarity=0.324  Sum_probs=34.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~   58 (761)
                      .|.=|+|+||||+|||.+|++++...+.++..|+...+.+
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            4556999999999999999999999998888888766643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=93.60  E-value=0.12  Score=63.01  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=39.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEeccccc--CCCCCcHHHHHHHHHHHHHCCC--cEEEeC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~--~~~~~~~~~~~~~~~~~L~~g~--~VIID~   85 (761)
                      .-++|+|+||+|||++++.+++..          +..+..++...+.  ....+.+++.++.+.+.+....  .++||-
T Consensus       204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE  282 (731)
T TIGR02639       204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE  282 (731)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence            357899999999999999999875          2222233332332  2334556666665555554332  356675

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=93.60  E-value=0.58  Score=46.30  Aligned_cols=26  Identities=38%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++|||||||.+.++...
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34589999999999999999997654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=93.57  E-value=0.059  Score=66.39  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .+|.+.|+|||||||+|+.|++.++  +.+++.+.+
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~--~~~~~~g~~   68 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLG--AQCLNTGSF   68 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHH
Confidence            5899999999999999999999999  667887666

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=93.54  E-value=0.48  Score=56.18  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+..+++.|++|+||||+|+.+++.+.
T Consensus        37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         37 LTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999998864

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=93.53  E-value=0.6  Score=49.55  Aligned_cols=40  Identities=20%  Similarity=0.485  Sum_probs=32.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ...|.-|+.-||||.|||-+|++|+.+...++.++..-.+
T Consensus       148 ~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l  187 (368)
T COG1223         148 DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL  187 (368)
T ss_pred             ccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence            3467889999999999999999999998877766655443

>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3

Probab=93.53  E-value=0.12  Score=53.54  Aligned_cols=39  Identities=15%  Similarity=0.280  Sum_probs=25.8

Q ss_pred             CCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc
Q 004319          572 ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD  613 (761)
Q Consensus       572 e~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d  613 (761)
                      ...|+..|-.+..+++++|.  ..+.|||+||- ..|+.|.+
T Consensus        22 ~p~pC~~Vd~~~gyvvlKd~--~G~~qyLL~Pt-~rIsGIEs   60 (222)
T PF02611_consen   22 NPAPCAQVDLQQGYVVLKDR--NGPLQYLLMPT-DRISGIES   60 (222)
T ss_dssp             --TTSSEEETTTTEEEEE-S--SSSS-EEEEES-S---STT-
T ss_pred             CCCCCeEEcCCCCEEEEeCC--CCCccEEEeec-cccCCccC
Confidence            34578888888999999994  77899999999 46666643

6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=93.47  E-value=0.06  Score=49.41  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+++|.||+|||||.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.46  E-value=0.069  Score=51.62  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +|.++|+.+||||||++.|...+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999976653

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.46  E-value=0.23  Score=54.36  Aligned_cols=104  Identities=11%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcH-HHHHHHHHHHHHCCCcEEEeCCC---CCHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTK-VQCLTSASSALKKGKSVFLDRCN---LEREQ   92 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~-~~~~~~~~~~L~~g~~VIID~tn---~~~~~   92 (761)
                      ..-++|.|++|+|||+++.+++..+   +.....+....+........ ..-.....+.+..-..+|||...   .+...
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~  235 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV  235 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence            3469999999999999999998775   34445555433211000000 00112334556677789999854   55566


Q ss_pred             HHHHHH-h--CC-CCceEEEEEEeCCHHHHHHHHH
Q 004319           93 RTDFVK-L--GG-PEVDVHAVVLDLPAKLCISRSV  123 (761)
Q Consensus        93 R~~~~~-l--~~-~~~~v~vV~Ld~p~e~~~~R~~  123 (761)
                      |..++. +  .+ ..-...+|--+.+.+.+.++..
T Consensus       236 ~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~  270 (306)
T PRK08939        236 RDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA  270 (306)
T ss_pred             HHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence            655544 2  22 2344566777889888888764

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=93.45  E-value=0.14  Score=56.03  Aligned_cols=41  Identities=22%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ..+|.+|+++|..|+||||-.-+|+..+   +......-.|.+|
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR  179 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR  179 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence            4579999999999999999988887665   3445555667774

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.45  E-value=0.075  Score=44.21  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      +.+|+|++||||||+..++.-.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987644

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.44  E-value=0.66  Score=51.51  Aligned_cols=106  Identities=21%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecccc-----------cCCCCCc-HHHHHHHHHHHHHCCCcEEEe
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-----------NKGKSGT-KVQCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D~i-----------~~~~~~~-~~~~~~~~~~~L~~g~~VIID   84 (761)
                      .-+|+++|++||||||+.+.+......   .....-.|.+           ...+.+. .......+..+|+.+-.+|+=
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v  201 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI  201 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence            468999999999999999998875541   1111112211           1111110 112335556677766665554


Q ss_pred             CCCCCHHHHHHHHHhCCCCceEEEEEEeC-CHHHHHHHHHhcc
Q 004319           85 RCNLEREQRTDFVKLGGPEVDVHAVVLDL-PAKLCISRSVKRI  126 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~-p~e~~~~R~~~R~  126 (761)
                      +-..........+.....|..+ +-.+.. +......|+..-.
T Consensus       202 gEird~~~~~~~l~aa~tGh~v-~~T~Ha~~~~~~~~Rl~~~~  243 (343)
T TIGR01420       202 GEMRDLETVELALTAAETGHLV-FGTLHTNSAAQTIERIIDVF  243 (343)
T ss_pred             eCCCCHHHHHHHHHHHHcCCcE-EEEEcCCCHHHHHHHHHHhc
Confidence            4445555444434442223322 222333 4556778887654

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=93.43  E-value=0.097  Score=53.17  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             Ccc-EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccccc
Q 004319           18 WKQ-ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTIN   57 (761)
Q Consensus        18 ~~~-~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~   57 (761)
                      ..| ..|-+.|+|||||||+..++.+.+.  .....|..|.+.
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t   52 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT   52 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence            345 7889999999999999999877764  346667777763

>TIGR02012 tigrfam_recA protein RecA

Probab=93.42  E-value=0.22  Score=54.77  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=26.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      .-.++.+.|+|||||||||..++...   +....+|+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~   91 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA   91 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence            34699999999999999999876543   344556654

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=93.38  E-value=0.68  Score=49.54  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHH-HCCCcEEEeCCCCCHH--
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSAL-KKGKSVFLDRCNLERE--   91 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L-~~g~~VIID~tn~~~~--   91 (761)
                      ..|+||++-|.-||||....++|.+.+.-....+..-.    ...+.+.   .+-..-+.| ..|+..|.|++-|...  
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~----~Pt~eE~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~  129 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFK----APSAEELDHDFLWRIHKALPERGEIGIFNRSHYEDVLV  129 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCC----CCCHHHHcCchHHHHHHhCCCCCeEEEEcCccccchhh
Confidence            35899999999999999999999998874333332210    0001110   111222333 5677888888655541  


Q ss_pred             -----------HHHH------HHHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           92 -----------QRTD------FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        92 -----------~R~~------~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                 .+..      |-+. ...|+.+.=+||.++.++..+|+.+|...+
T Consensus       130 ~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p  185 (264)
T TIGR03709       130 VRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDP  185 (264)
T ss_pred             hhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCC
Confidence                       1222      2223 567898999999999999999999998654

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=93.38  E-value=0.21  Score=55.91  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEec
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQ   53 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~   53 (761)
                      ..+..++|.|+||+||||+++.+++.+     +..+.+++.
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~   93 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC   93 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence            345568999999999999999998765     233555554

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=93.37  E-value=0.24  Score=52.74  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ....+|.|+|++|+||||+|.++++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            67889999999999999999998866

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.37  E-value=0.057  Score=50.92  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++|||||||.+.|+...
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            3589999999999999999987654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.34  E-value=0.1  Score=56.41  Aligned_cols=38  Identities=34%  Similarity=0.481  Sum_probs=28.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDT   55 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~   55 (761)
                      ..-.+|.|+|+||||||||.+++...+.  ....+|..|.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~  141 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ  141 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence            3457899999999999999999988754  2355555443

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=93.33  E-value=0.3  Score=51.67  Aligned_cols=94  Identities=17%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccc--------------------cCCCCCcH-HHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI--------------------NKGKSGTK-VQCLTSASSA   74 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i--------------------~~~~~~~~-~~~~~~~~~~   74 (761)
                      ..|++|.|.||+|||+|+..++...    +.++.+++.+.-                    +.+..... ...+..+...
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~~~   98 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAAEK   98 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHHHH
Confidence            4699999999999999999987643    345666664221                    12221111 1122334455


Q ss_pred             HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeC
Q 004319           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL  113 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~  113 (761)
                      +.....+|.|....+...-...++. +.....+.+|++|.
T Consensus        99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy  138 (259)
T PF03796_consen   99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY  138 (259)
T ss_dssp             HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred             HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence            6666667777767777665555544 22213345556663

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=93.29  E-value=0.086  Score=61.27  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~D   54 (761)
                      +..+++|.|+|||||||||.+++..    .+....+++.+
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            4679999999999999999997532    35566667654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=93.27  E-value=0.074  Score=54.48  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=28.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH---HcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMR---SSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~---~~~~~~~~I~~D~i   56 (761)
                      .-.+++||.|||||||+..+.+   ..|+.+..+|.|--
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA   42 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA   42 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence            3578999999999999998764   46677777887643

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.25  E-value=0.43  Score=53.25  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|+||+||||+|+.+++...
T Consensus        37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970         37 HLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3466899999999999999999988764

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=93.23  E-value=0.45  Score=57.19  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+..++++|++|+||||+|+.+++.+.
T Consensus        35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         35 GRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            34567899999999999999999998865

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.22  E-value=0.4  Score=56.40  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|+||+||||+|+.+++.+.
T Consensus        36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         36 RLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456789999999999999999998875

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=93.18  E-value=0.083  Score=54.11  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEeccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDT   55 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~   55 (761)
                      ..+.+.+|.++|.+|||||||.++++..++  ....++..|.
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~   59 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV   59 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            445688999999999999999999988754  2334444443

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.15  E-value=0.45  Score=56.69  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=23.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+..+++.|++|+||||+|+.+++.+.
T Consensus        37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         37 VAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999998865

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.17  Score=54.95  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..-|+|+||.|||||-+|+-|++.++.+|..-+.-.+
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL  133 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL  133 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence            3469999999999999999999999988877666555

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=93.14  E-value=0.44  Score=57.09  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=24.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .-+..+++.|++|+||||+|+.+++.++
T Consensus        36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         36 RLHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3456789999999999999999998876

>TIGR00763 lon ATP-dependent protease La

Probab=93.11  E-value=0.16  Score=62.44  Aligned_cols=33  Identities=24%  Similarity=0.574  Sum_probs=29.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      ..++|+|+||+||||+|+.++..++..+..++.
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~  380 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL  380 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence            479999999999999999999999877877764

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=93.09  E-value=0.07  Score=52.44  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++.++|++||||||++.+|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998764

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK00089 era GTPase Era; Reviewed

Probab=93.02  E-value=0.59  Score=50.29  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      +.-.|.|+|.||||||||.+.|..
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g   27 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVG   27 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhC
Confidence            345799999999999999999874

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.11  Score=54.65  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      .|.=++|.||||+|||-++++.+......|.++....
T Consensus       188 pprgvllygppg~gktml~kava~~t~a~firvvgse  224 (408)
T KOG0727|consen  188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE  224 (408)
T ss_pred             CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence            4566899999999999999999987665565555433

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=92.99  E-value=0.77  Score=53.29  Aligned_cols=109  Identities=13%  Similarity=0.029  Sum_probs=71.5

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHH-HCCCcEEEeCCCCCHH-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSAL-KKGKSVFLDRCNLERE-   91 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L-~~g~~VIID~tn~~~~-   91 (761)
                      .+.|.||++-|.-||||++..++|...+......+..-.    .....+.   .+-..-+.| ..|...|.|++-|... 
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~----~P~~eE~~~~flwRfw~~lP~~G~I~IFdRSWY~~vl  112 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFG----RPSDEERERPPMWRFWRRLPPKGKIGIFFGSWYTRPL  112 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCC----CCCHHHhcCcHHHHHHHhCCCCCeEEEEcCcccchhh
Confidence            467899999999999999999999998773222221100    0000100   112222223 5677788888665541 


Q ss_pred             ------------HHHHH------HHh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           92 ------------QRTDF------VKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        92 ------------~R~~~------~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                  .+..+      -+. ...|+.+.=+||.++.++..+|+.+|...+
T Consensus       113 verv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P  169 (493)
T TIGR03708       113 IERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDP  169 (493)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence                        22222      223 567898999999999999999999998764

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=92.96  E-value=0.072  Score=62.35  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +..+++|+||||+||||||+.|++.+.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            456999999999999999999998765

>cd03114 ArgK-like The function of this protein family is unkown

Probab=92.92  E-value=0.091  Score=51.20  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ++.++|++||||||++..+...+   +.++.+++.|.
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~   37 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP   37 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            37889999999999999987654   34566666663

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=92.83  E-value=0.052  Score=35.24  Aligned_cols=23  Identities=22%  Similarity=0.538  Sum_probs=19.2

Q ss_pred             ccccCCCCCCChHHHHHHHhhcC
Q 004319          716 RCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       716 ~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|..|++.|++...|+.|+.+++
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCcCCCCcCCcHHHHHHHHHhhC
Confidence            69999999999999999998764

...

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=92.82  E-value=0.15  Score=51.03  Aligned_cols=32  Identities=31%  Similarity=0.566  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH-Hc-CCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMR-SS-ARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~-~~-~~~~~~I~~   53 (761)
                      ++++.|..|||||||.+++.+ .. +..+.+|-.
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~n   35 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVN   35 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEc
Confidence            689999999999999999994 22 244555543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=92.82  E-value=0.11  Score=57.24  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCe
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPW   48 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~   48 (761)
                      ..|+|+|.|||||||+++.|+..++..+
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            4789999999999999999999888544

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=92.80  E-value=0.11  Score=52.97  Aligned_cols=36  Identities=22%  Similarity=0.461  Sum_probs=27.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      .-.++.+.|+||||||+|+.+++...   +....+++.+
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            45799999999999999999987542   3445556654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=0.26  Score=55.01  Aligned_cols=36  Identities=25%  Similarity=0.522  Sum_probs=30.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .-|++.||||.|||-||+.|+...|..|......++
T Consensus       385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV  420 (630)
T KOG0742|consen  385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV  420 (630)
T ss_pred             hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc
Confidence            478999999999999999999999977766665444

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=92.78  E-value=0.68  Score=49.55  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe-ccccc-CCCC----Cc--HHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC-QDTIN-KGKS----GT--KVQCLTSASSALKKGKSVFLDRCNL   88 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~-~D~i~-~~~~----~~--~~~~~~~~~~~L~~g~~VIID~tn~   88 (761)
                      .-+|+++|++||||||+.+.+......   ....+. ..++. .+..    ..  .....+.+..+|+.+-.+|+=+--.
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR  159 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence            458999999999999999998776542   122221 11111 1110    00  0113356667777777777767666


Q ss_pred             CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      ..+....+++. ..-+.-+..+.- -+......|+..
T Consensus       160 ~~e~a~~~~~aa~tGh~v~tTlHa-~~~~~ai~Rl~~  195 (264)
T cd01129         160 DAETAEIAVQAALTGHLVLSTLHT-NDAPGAITRLLD  195 (264)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEecc-CCHHHHHHHHHH
Confidence            66655555555 221221222221 234556667653

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.76  E-value=0.63  Score=55.60  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..-+..++++|++|+||||+|+.+++.+.
T Consensus        35 ~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         35 QRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567899999999999999999998875

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=92.74  E-value=0.1  Score=54.38  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~   53 (761)
                      +..++++.|+||||||||+.+++..   .+....+++.
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~   61 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT   61 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence            5679999999999999999998643   2445555555

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=92.73  E-value=1.3  Score=48.36  Aligned_cols=26  Identities=31%  Similarity=0.553  Sum_probs=23.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...++++|++|||||||.+.|...+.
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCC
Confidence            45899999999999999999987765

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.73  E-value=0.042  Score=35.92  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             ccccCCCCCCChHHHHHHHhhc
Q 004319          716 RCHRCRSAHPSIPRLKSHISSC  737 (761)
Q Consensus       716 ~C~~C~~~~~n~~~LK~Hl~~~  737 (761)
                      +|..|++.|.+...|+.|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHhHC
Confidence            6999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=92.72  E-value=0.12  Score=58.04  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=25.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..|.+|.++|++|||||||+.+|...+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999998876

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=92.71  E-value=0.61  Score=50.40  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..|..+++.||||+||||+|..+++.+.
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence            3566899999999999999999998865

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=92.67  E-value=0.075  Score=54.78  Aligned_cols=21  Identities=38%  Similarity=0.855  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |++.|+|||||||+.++++..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            588999999999999999987

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=92.66  E-value=0.83  Score=51.37  Aligned_cols=103  Identities=18%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEeccccc-------------CCCCC-cHHHHHHHHHHHHHCCCcE
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN-------------KGKSG-TKVQCLTSASSALKKGKSV   81 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~-------------~~~~~-~~~~~~~~~~~~L~~g~~V   81 (761)
                      -+++++|++||||||+.+.+.....     .....+. |-+.             +...+ ........+..+|+..-.+
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE-dp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~  228 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE-DPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI  228 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-cCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence            4789999999999999999877652     1122221 1110             00111 0112335667788888788


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      |+=+--...+.....++. ..-+.-+..+. --+......|+..=
T Consensus       229 I~vGEiRd~et~~~al~aa~TGH~v~tTlH-a~s~~~ai~Rl~~~  272 (372)
T TIGR02525       229 IGVGEIRDLETFQAAVLAGQSGHFCLGTLH-VKSPGEAISRCLQM  272 (372)
T ss_pred             EeeCCCCCHHHHHHHHHHHhcCCcEEEeeC-CCCHHHHHHHHHHh
Confidence            777766666655544444 22222122222 12456677787653

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=92.64  E-value=0.7  Score=50.46  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCe-EEEecccc---c-CCCCCcHHHHHHHHHHH-----HHCCCcEEEeC-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPW-ARICQDTI---N-KGKSGTKVQCLTSASSA-----LKKGKSVFLDR-   85 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~-~~I~~D~i---~-~~~~~~~~~~~~~~~~~-----L~~g~~VIID~-   85 (761)
                      ..-+..+++.|++|+||+|+|+.+++.+-... .....|.+   . ++.....++..+.+...     ....+.+|||. 
T Consensus        23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~a  102 (313)
T PRK05564         23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNS  102 (313)
T ss_pred             CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEech
Confidence            44567899999999999999999998753100 00011211   0 22222333333332211     12335678877 


Q ss_pred             CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           86 CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        86 tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      -.++......+++. .+......+|.+.-..+.+..-+..|-.
T Consensus       103 d~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~  145 (313)
T PRK05564        103 EKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ  145 (313)
T ss_pred             hhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence            45566666677777 6555555555555555666555555554

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.59  E-value=0.22  Score=53.79  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccc-----------cCCCCC-cHHHHHHHHHHHHHCCCcEEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTI-----------NKGKSG-TKVQCLTSASSALKKGKSVFL   83 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i-----------~~~~~~-~~~~~~~~~~~~L~~g~~VII   83 (761)
                      +.-||++.||.||||||....+....+.  ...++. .|=|           .+.+.+ ....+...++.+|++.-.||+
T Consensus       124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl  203 (353)
T COG2805         124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL  203 (353)
T ss_pred             CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence            4459999999999999988887766551  122222 1222           112222 223344777889999999999


Q ss_pred             eCCCCCHHHHHHHH
Q 004319           84 DRCNLEREQRTDFV   97 (761)
Q Consensus        84 D~tn~~~~~R~~~~   97 (761)
                      =+--.+.+.-.--+
T Consensus       204 vGEmRD~ETi~~AL  217 (353)
T COG2805         204 VGEMRDLETIRLAL  217 (353)
T ss_pred             EeccccHHHHHHHH
Confidence            88655555444333

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=92.52  E-value=0.15  Score=54.26  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D   54 (761)
                      ...++++.|+||+||||||.+++..   .+....+++.+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            4579999999999999999997653   24456666653

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK10646 ADP-binding protein; Provisional

Probab=92.49  E-value=0.13  Score=50.59  Aligned_cols=27  Identities=22%  Similarity=0.488  Sum_probs=24.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+|+|.|.-|||||||++.+++.++
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            345899999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	761
3spd_A	204	Crystal Structure Of Aprataxin Ortholog Hnt3 In Com		2e-11
3sp4_A	204	Crystal Structure Of Aprataxin Ortholog Hnt3 From S		3e-11
3szq_A	206	Structure Of An S. Pombe AptxDNAAMPZN COMPLEX Lengt		3e-11
3zvn_A	416	The Structural Basis For Substrate Recognition By M		5e-06
3zvl_A	416	The Structural Basis For Substrate Recognition By M		5e-06
3u7e_B	381	Crystal Structure Of Mpnkp Catalytic Fragment (D170		7e-06
3zvm_A	416	The Structural Basis For Substrate Recognition By M		9e-06
1yj5_A	383	Molecular Architecture Of Mammalian Polynucleotide		1e-05
3u7g_A	379	Crystal Structure Of Mpnkp Catalytic Fragment (D170		1e-05
4gp6_A	171	Polynucleotide Kinase Length = 171		6e-04

>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna Length = 204

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
           PE +K+ ++   DDVV++ D++PK++ H+L+++R   L  +   ++  +H  +++ + + 
Sbjct: 17  PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 75
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
                 G+ + E       +  +E  +   ++G+H+ PSM  LHLH+++ D  S  LKN 
Sbjct: 76  VQGDLSGLIFDEARNCLSQQLTNEALANYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 135
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
            H+ SF + FF         +   G  T     SL   +L+C RC  +      +LK+H+
Sbjct: 136 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 190

>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From Schizosaccharomyces Pombe Length = 204

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
           PE +K+ ++   DDVV++ D++PK++ H+L+++R   L  +   ++  +H  +++ + + 
Sbjct: 17  PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 75
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
                 G+ + E       +  +E      ++G+H+ PSM  LHLH+++ D  S  LKN 
Sbjct: 76  VQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 135
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
            H+ SF + FF         +   G  T     SL   +L+C RC  +      +LK+H+
Sbjct: 136 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 190

>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX Length = 206

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 571 PERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRL--ADVRNEHLQILQTMHAV 628
           PE +K+ ++   DDVV++ D++PK++ H+L+++R   L  +   ++  +H  +++ + + 
Sbjct: 19  PESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSY 77
Query: 629 ------GMKWAE-------KFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNK 675
                 G+ + E       +  +E      ++G+H+ PSM  LHLH+++ D  S  LKN 
Sbjct: 78  VQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNS 137
Query: 676 KHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RSAHPSIPRLKSHI 734
            H+ SF + FF         +   G  T     SL   +L+C RC  +      +LK+H+
Sbjct: 138 AHYISFTSPFFVKIDTPTSNLPTRGTLT-----SLFQEDLKCWRCGETFGRHFTKLKAHL 192

>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Length = 381

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 225 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 277
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 278 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFXATIEQARHNNRFREXTDPSHAPVSDXV 336
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 337 XFSYRKQFEPPTLAEGFLEI 356

>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 260 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 312
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      + +V
Sbjct: 313 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 371
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 372 MFSYRKQFEPPTLAEGFLEI 391

>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase, A Dna Repair Enzyme Length = 383

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 227 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 279
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 280 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 338
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 339 XFSYRKQFEPPTLAEGFLEI 358

>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Bound To Single- Stranded Dna (Tcctap) Length = 379

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  + S+   +  + +DT+     G+  +C++S  +AL++GK V
Sbjct: 223 VVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRV 275
Query: 82  FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV 141
            +D  N +   R  +++    +  V     +  A +  +R   R     +      +  V
Sbjct: 276 VIDNTNPDVPSRARYIQCAK-DAGVPCRCFNFCATIEQARHNNRFREXTDPSHAPVSDXV 334
Query: 142 NRMLQKK-ELPKLSEGFSRI 160
               +K+ E P L+EGF  I
Sbjct: 335 XFSYRKQFEPPTLAEGFLEI 354

>pdb|4GP6|A Chain A, Polynucleotide Kinase Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSA---------S 72
           LV+++G+ GSGKSTF +   + +    +  C+  ++  ++    Q +T A         S
Sbjct: 11  LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDEND---QTVTGAAFDVLHYIVS 67
Query: 73  SALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVH----AVVLDLPAKLCISRSVKRIEH 128
             L+ GK   +D  N++   R   +++     D H    AVV +LP K+C  R+  R + 
Sbjct: 68  KRLQLGKLTVVDATNVQESARKPLIEIAK---DYHCFPVAVVFNLPEKVCQERNKNRTDR 124
Query: 129 E 129
           +
Sbjct: 125 Q 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	761
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	1e-48
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	2e-22
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-20
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	5e-19
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	3e-18
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	4e-17
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-16
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	4e-16
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	7e-16
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	8e-16
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-15
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	2e-15
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	3e-15
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	8e-14
1spv_A	184	Putative polyprotein/phosphatase; structural genom	2e-13
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	2e-13
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	3e-13
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	3e-13
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	4e-13
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	2e-12
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	2e-12
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	4e-12
2x47_A	235	Macro domain-containing protein 1; signaling prote	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	3e-09
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	3e-08
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	4e-07
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-05
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	8e-05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	1e-04
3oj7_A	117	Putative histidine triad family protein; hydrolase	2e-04
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	2e-04
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	6e-04

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204

 Score =  169 bits (429), Expect = 1e-48
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 22/194 (11%)

Query: 559 SWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLD--RLADVRN 616
           S+   L      PE +K+ ++   DDVV++ D++PK++ H+L+++R   L      ++  
Sbjct: 5   SFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMM 63

Query: 617 EHLQILQTMHAVGMKWAEKFLHEDA-------------SLAFRLGYHSAPSMRQLHLHVI 663
           +H  +++ + +         + ++A                 ++G+H+ PSM  LHLH++
Sbjct: 64  KHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIM 123

Query: 664 SQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRC-RS 722
           + D  S  LKN  H+ SF + FF         +   G        SL   +L+C RC  +
Sbjct: 124 TLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPTRGT-----LTSLFQEDLKCWRCGET 178

Query: 723 AHPSIPRLKSHISS 736
                 +LK+H+  
Sbjct: 179 FGRHFTKLKAHLQE 192

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score = 99.6 bits (247), Expect = 2e-22
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG 78
              +V+ VG PG+GKSTF +  + S    +  + +DT+     G+  +C++S  +AL++G
Sbjct: 257 NPEVVVAVGFPGAGKSTFIQEHLVS--AGYVHVNRDTL-----GSWQRCVSSCQAALRQG 309

Query: 79  KSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA 137
           K V +D  N +   R  +++      V           +     +  R E         +
Sbjct: 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVS 368

Query: 138 AAVVNRMLQKKELPKLSEGFSRITLC 163
             V+    ++ E P L+EGF  I   
Sbjct: 369 DMVMFSYRKQFEPPTLAEGFLEILEI 394

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 27/156 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 66  ---QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF 157
           + KR              V+  M +          +
Sbjct: 123 NSKRGTKAVP------IDVLRSMYKSMREYLGLPVY 152

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 335 AAQKHINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPA 392
           A  +     ++ T VGD+T +            I NAAN  +   G GV  AI    G  
Sbjct: 6   ATCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLD 64

Query: 393 LEVATAERAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKG 452
                 +  K   P   ++     T      +G+  V +V+GP       +         
Sbjct: 65  FVEYCEDYVKKHGPQQRLV-----TPS--FVKGIQCVNNVVGPRHGDNNLH--------- 108

Query: 453 CEILRKAYT-SLFEGFLSIV 471
            E L  AY   L +G ++ V
Sbjct: 109 -EKLVAAYKNVLVDGVVNYV 127

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Length = 350

 Score = 85.9 bits (212), Expect = 3e-18
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 25/167 (14%)

Query: 559 SWAQALYRTAMYPER--HKDDLLEISDDVVVLNDLY----PKAQKHILVLSRFDGLDRLA 612
            W   +       +R   ++   + SD  V++ DL          +++ +    G+  L 
Sbjct: 185 QWVYNILDKKAEADRIVFENP--DPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLR 242

Query: 613 DVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHL 672
           D+  EHL +L+ +   G +   K          R+  H  PS   LH+H  +  F +   
Sbjct: 243 DLTPEHLPLLRNILREGQEAILKRYQVTGD-RLRVYLHYLPSYYHLHVHFTALGFEAPGS 301

Query: 673 K----------------NKKHWNSFNTAFFCDSVDVLEEISNHGKAT 703
                            + KH+      F   + D L ++    +  
Sbjct: 302 GVERAHLLAQVIENLECDPKHYQQRTLTFALRTDDPLLQLLQKAQQE 348

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Length = 301

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 20/143 (13%)

Query: 582 SDDVVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMK-WAEKF 636
           SD  V++ DL          +++ +    G+  L D+  EHL +L+ +   G +   +++
Sbjct: 161 SDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRY 220

Query: 637 LHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSV-DVLEE 695
             +      R+  H  PS   LH+H  +  F +     ++       A     V + LE 
Sbjct: 221 RMKGDH--LRVYLHYLPSYYHLHVHFTALGFEAPGSGVER-------AHLLAEVIENLEC 271

Query: 696 ISNH-GKATL----KDYDSLLSM 713
              H  + TL    +  D LL +
Sbjct: 272 DPRHYQQRTLTFALRADDPLLKL 294

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTK----------------- 64
           +++ +G PGSGKST+    +  +   +  I +D   +     +                 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62

Query: 65  --VQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLCISR 121
                  S        K V +   NL  E+R  +          V   V D+P    + R
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

Query: 122 SVKRIEH 128
           + KR   
Sbjct: 123 NSKRGTK 129

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 322 TQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGV 381
           T  +       A+     +       + GD+  +  G  +  + I NAAN  L   GGG+
Sbjct: 17  TTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVVNG--VDFDFIVNAANENLA-HGGGL 73

Query: 382 NAAIFSAAGPALEVATAERAK---SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMN 438
             A+       L+  + E       +  G  V+V                + +V+GP   
Sbjct: 74  AKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVEC----------DSLRIFNVVGPRKG 123

Query: 439 PRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIV 471
                          ++L KAY ++     + +
Sbjct: 124 KHER-----------DLLIKAYNTINNEQGTPL 145

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           K    ++GDI+ L        + + NAAN  L   GGGV  AI       L+  + +   
Sbjct: 17  KNVKFYLGDISHLVNCVS--FDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYIS 73

Query: 403 S---LYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S   L  G  V++               +V +V+GP                   +L +A
Sbjct: 74  SNGPLKVGAGVMLE----------CEKFNVFNVVGPRTGKHEH-----------SLLVEA 112

Query: 460 YTSLFEGFLSIV 471
           Y S+       +
Sbjct: 113 YNSILFENGIPL 124

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 30/123 (24%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE 399
           +    +    GDI            VI NAAN + +  GGGV  A++     + ++   E
Sbjct: 1   MKAPSYHVVRGDIATA------TEGVIINAANSKGQ-PGGGVCGALYKKFPESFDLQPIE 53

Query: 400 RAKSLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
                  G + +V   +           H+IH +GPN N           V+G + L +A
Sbjct: 54  ------VGKARLVKGAA----------KHIIHAVGPNFN-------KVSEVEGDKQLAEA 90

Query: 460 YTS 462
           Y S
Sbjct: 91  YES 93

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 22  LVIMVGAPGSGKSTFC---EHVMRSSARPWARICQDTINKGKSGTK-------VQCLTSA 71
           L+I+ G PG GKSTF      ++  +      +  D I +     K        +     
Sbjct: 6   LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65

Query: 72  SSALKKGKSVFLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEG 130
             +  K   V +D  N     R D + +      +   + L     + I R+++R E   
Sbjct: 66  IDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP 125

Query: 131 NLQGGKAAAVVNRMLQKKELPKLSEGFSRITL 162
           N        V+ +M +K + P     +    L
Sbjct: 126 N-------EVIKKMYEKFDEPGKKYKWDEPFL 150

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 29/128 (22%)

Query: 340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPAL--EVAT 397
               +       +    T      +V+ N+    L    G ++ ++   AGP L  E+ T
Sbjct: 36  PGGLQMLLVKEGVQNAKT------DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDT 89

Query: 398 AERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCE 454
             +  ++  G  +      L             +V+HV+ P       +          +
Sbjct: 90  VGQGVAVSMGTVLKTSSWNLDC----------RYVLHVVAPEWRNGSTSS--------LK 131

Query: 455 ILRKAYTS 462
           I+      
Sbjct: 132 IMEDIIRE 139

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 33/139 (23%)

Query: 336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEV 395
            +  +         GDIT+           I NAAN RL+  GGGV  AI  A      +
Sbjct: 14  FEAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGL 66

Query: 396 ATAERAKSLY---------PGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPN 443
            T    K++           G  V+ P   L          G+ +V H +GP  +     
Sbjct: 67  YTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE-------RGIKYVFHTVGPICS----- 114

Query: 444 CLDGDYVKGCEILRKAYTS 462
                  +  E L KA+  
Sbjct: 115 --GMWSEELKEKLYKAFLG 131

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            K   + GD+  L     L  +V+ NAAN  L+   GGV  AI    G  L   + E  K
Sbjct: 10  GKVSFYQGDLDVLINF--LEPDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLK 66

Query: 403 SLYP---GNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
           S      GN+V+                 V++ +GP     R              L   
Sbjct: 67  SSKAIAPGNAVLFE--------NVLEHLSVMNAVGPRNGDSRVE----------GKLCNV 108

Query: 460 YTSLFEGFLSIV 471
           Y ++ +    I+
Sbjct: 109 YKAIAKCDGKIL 120

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 31/119 (26%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLY---P 406
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +       
Sbjct: 10  GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 62

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G++VI     LP+            V+H +GP       N          ++L+ AY +
Sbjct: 63  GHAVITLAGDLPA----------KAVVHTVGPVWRGGEQNE--------DQLLQDAYLN 103

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 27  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 83

Query: 407 GNSVIVPLPSTSP--LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           G S +      S   L         +HV+GPN+N               ++L+ AY +
Sbjct: 84  GGSCL-----LSGHNLA-----KKCLHVVGPNLN--AGED--------IQLLKAAYEN 121

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 36/116 (31%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +           + NAAN R    G GV  A++     + + +          G +
Sbjct: 17  MDIAKN------DEECVVNAANPRGL-PGDGVCKAVYKKWPESFKNSATP------VGTA 63

Query: 410 VIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             V     P             VIH +GPN +       +    +G   L  AY  
Sbjct: 64  KTVMCGTYP-------------VIHAVGPNFS-------NYSESEGDRELAAAYRE 99

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 32/123 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
            +     GDIT          + I NAAN  LK  G GV  AI    GP+++       K
Sbjct: 2   ARIRVVQGDITEF------QGDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRIGK 54

Query: 403 SLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKA 459
            +  G + +     LP            +VIH       P              E +RKA
Sbjct: 55  -IRVGEAAVTGAGNLPV----------RYVIHAAVLGDEPASL-----------ETVRKA 92

Query: 460 YTS 462
             S
Sbjct: 93  TKS 95

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAE---RAKSLYP 406
           GD+ RL        +V+ NA+N  LK   GG+ AA+  AAGP L+    +   R   L P
Sbjct: 44  GDLARL------PVDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLP 96

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
           GN+ I     LP            HVIH +GP  +         +  +   +LR+A   
Sbjct: 97  GNATISKAGKLPY----------HHVIHAVGPRWS-------GYEAPRCVYLLRRAVQL 138

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 30/119 (25%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYP--- 406
            DI+ + +   +    I +     +      +  A+  A G        E  KS  P   
Sbjct: 26  SDISHIGS---MRVEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEV 81

Query: 407 GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
             + +     L +            VIH   P     +            E L +   +
Sbjct: 82  AEAAVSQSSGLAA----------KFVIHCHIPQWGSDKCE----------EQLEETIKN 120

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 33/126 (26%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 19  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 71

Query: 403 SLYP---GNSVIVP---LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEIL 456
              P     + +     LP+            VIH   P     +            E+L
Sbjct: 72  KNGPLEVAGAAVSAGHGLPA----------KFVIHCNSPVWGSDKC----------EELL 111

Query: 457 RKAYTS 462
            K   +
Sbjct: 112 EKTVKN 117

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 320 DLTQGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGG 379
           ++ +G  +          K +N +K      DIT+L        + I NAAN  L  GGG
Sbjct: 40  EMAKGVAVKVEEPRYKKDKQLN-EKISLLRSDITKL------EVDAIVNAANSSLL-GGG 91

Query: 380 GVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP---LPSTSPLCGREGVTHVIHVLGPN 436
           GV+  I  AAGP L             G + I     LP+           +VIH +GP 
Sbjct: 92  GVDGCIHRAAGPLLTDECRTLQS-CKTGKAKITGGYRLPA----------KYVIHTVGPI 140

Query: 437 MNPRRPNCLDGDYVKGC-EILRKAYTS 462
                     G+        LR  Y S
Sbjct: 141 AY--------GEPSASQAAELRSCYLS 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 1e-11
 Identities = 91/591 (15%), Positives = 163/591 (27%), Gaps = 192/591 (32%)

Query: 275 DVPTLAFPSLSTSDFQF-----NNEKASDVII--------EKVEEFVNKLGNARLVLVDL 321
           DV  +    LS  +        +    +  +         E V++FV ++         L
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV---------L 87

Query: 322 TQGSK-ILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCC--NV-----IANAANW- 372
               K ++S ++ +  Q  +  + +        RLY    +    NV             
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 373 -RLKP-------GGGGVNAAIFSAAGP---ALEVATAERAKSLYPGN------------- 408
             L+P       G  G        +G    AL+V  + + +                   
Sbjct: 145 LELRPAKNVLIDGVLG--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 409 SVIVPLPS-----TSPLCGR----EGVTHVIHVLGPN-----MNPRRPNCL-------DG 447
           +V+  L             R      +   IH +         +    NCL       + 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 448 DYVK----GCEIL---R-KAYTSLFEGFLSIVRSQEKLSKGCNEDIRLE-------PSVS 492
                    C+IL   R K  T       +   S +  S     D               
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 493 QDHSEDVHGN--YISTGDKIKRDGGHEYEQSKK--CKTQNEVGTDINLSRAANLSADNEK 548
               E +  N   +S   +  RDG   ++  K   C     +   I  S    L     +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IESS-LNVLEPAEYR 372

Query: 549 IGVSTSKAWGSWAQALYRT-AMYPERHK--DDLLEI-------SDDVVVLNDLYPKAQKH 598
                          ++   +++P        LL +       SD +VV+N L+  +   
Sbjct: 373 --------------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--- 415

Query: 599 ILVLSRFDG---------LDRLADVRNE---HLQILQ--TMHAVGMKWAEKFLHEDASLA 644
            LV  +            L+    + NE   H  I+    +            + D    
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 645 FRLGYH--------SAPSMRQLHLHVISQDFNSKHLKNK-KH----WNS----FNT---- 683
             +G+H             R + L     DF    L+ K +H    WN+     NT    
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL-----DFR--FLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 684 ----AFFCDSVDVLEEISNHGKATLKDYDSLLSMELRCHRCRSAHPSIPRL 730
                + CD+    E + N     + D+  L  +E      +  +  + R+
Sbjct: 528 KFYKPYICDNDPKYERLVN----AILDF--LPKIEENLICSK--YTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 8e-09
 Identities = 102/691 (14%), Positives = 194/691 (28%), Gaps = 206/691 (29%)

Query: 2   DTDIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN 57
             +ID    +KD      ++   ++         F E V+R +      P     +    
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 58  KGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKL 117
             +              L     VF    N+ R Q                  L L   L
Sbjct: 108 MTRM------YIEQRDRLYNDNQVFAKY-NVSRLQP----------------YLKLRQAL 144

Query: 118 CISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYS 177
              R  K +             +++ +L          G  +  +         ALD   
Sbjct: 145 LELRPAKNV-------------LIDGVL----------GSGKTWV---------ALDVCL 172

Query: 178 GLGPLDTLPHG----SFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITE 233
                  +       +    N    +   + K L ++D    + S  SS        I  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 234 EKNSCLEGQE-ITSL--LSDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQ 290
           E    L+ +     L  L +     V+   N +  +            L    L+T   Q
Sbjct: 233 ELRRLLKSKPYENCLLVLLN-----VQ---NAKAWNAFNLSC----KIL----LTTRFKQ 276

Query: 291 FNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQG---SKILSLVRAKAAQKHINPKKFFT 347
                        V +F++      + L   +      ++ SL+  K       P+    
Sbjct: 277 -------------VTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYL--DCRPQ---- 316

Query: 348 FVGDITRLYTGGG-LCCNVIA-----NAA---NWRLKPGGGGVNAAIFSAAGPALEVATA 398
              D+ R          ++IA       A   NW+       +   I S    +L V   
Sbjct: 317 ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIES----SLNVLEP 368

Query: 399 ERAKSLYPGNSVI---VPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEI 455
              + ++   SV      +P           T ++ ++  ++            V     
Sbjct: 369 AEYRKMFDRLSVFPPSAHIP-----------TILLSLIWFDVIKSDV----MVVVNKLH- 412

Query: 456 LRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYI---------ST 506
            +    SL E      +  ++ +      I LE  V  ++   +H + +          +
Sbjct: 413 -KY---SLVE------KQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 507 GDKIK--RDG------GH---EYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSK 555
            D I    D       GH     E  ++      V  D              KI    S 
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--------KI-RHDST 512

Query: 556 AW---GSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA 612
           AW   GS    L +   Y + +      I D     ND  PK ++ +  +  F  L ++ 
Sbjct: 513 AWNASGSILNTLQQLKFY-KPY------ICD-----ND--PKYERLVNAILDF--LPKIE 556

Query: 613 D--VRNEHLQILQTMHAVGMKWAEKFLHEDA 641
           +  + +++  +L+    + +   ++ + E+A
Sbjct: 557 ENLICSKYTDLLR----IALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 62/344 (18%), Positives = 105/344 (30%), Gaps = 120/344 (34%)

Query: 454 EILRKAYTSLFEGFLSIVRSQEKLSKGCNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRD 513
           E+LR  Y      FL        +     +     PS+           YI   D++  D
Sbjct: 85  EVLRINY-----KFLM-----SPIKTEQRQ-----PSMMTR-------MYIEQRDRLYND 122

Query: 514 GGHEYEQSKKCKTQNEVGTDINLSRAANLSADNEKIGVSTSKAWGSWAQALYRTAMYPER 573
                         N+V    N+SR        +                L R A     
Sbjct: 123 --------------NQVFAKYNVSRL-------QPY------------LKL-RQA----- 143

Query: 574 HKDDLLEISDDVVVLNDLY--PKAQKHILVLS--RFDGLDRLAD-------VRNEH---- 618
               LLE+     VL  +     + K  + L       +    D       ++N +    
Sbjct: 144 ----LLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 619 -LQILQTM-HAVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDF-NS----KH 671
            L++LQ + + +   W  +    D S   +L  HS  +  +L   + S+ + N      +
Sbjct: 198 VLEMLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLN 252

Query: 672 LKNKKHWNSFNTAFFC------------DSVDVL---EEISNHGKATLKDYDSLLSMELR 716
           ++N K WN+FN    C            D +          +H   TL   D + S+ L+
Sbjct: 253 VQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK 309

Query: 717 CHRCRSAHPSIPRLKSHISSCRAPFPSSLLENGRLMLAPRNTAQ 760
              CR     +PR     +    P   S++     +     T  
Sbjct: 310 YLDCRPQ--DLPREVLTTN----PRRLSII--AESIRDGLATWD 345

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 25/179 (13%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------------- 62
              L+I+ G P +GK+T  + +          + +D   +                    
Sbjct: 4   TPALIIVTGHPATGKTTLSQALAT--GLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 63  TKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISR 121
             +    +A++ L+ G+S+ ++              L          +       + + R
Sbjct: 62  AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVER 121

Query: 122 SVKRIEHEGNLQGGKAA---AVVNRMLQKKELPKLSEGFSRITLCQ---NENDVQAALD 174
            + RI       G       A +  +  + ++P L  G   +T+      + D+ A + 
Sbjct: 122 ILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQ 180

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 13/177 (7%)

Query: 309 NKLGNARLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLC 362
           N +   R++L D  +         I            I+     + +  + +        
Sbjct: 12  NGVKKMRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGH 71

Query: 363 CNVIANAANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPS 416
              I +  N      GGG + A+++  G              +    G++ +V       
Sbjct: 72  SYAIVSPGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLE 130

Query: 417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRS 473
              +  R+G+ ++IHV                   G E +  A  +        +  
Sbjct: 131 EKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDG 187

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT----INKGKSGTKVQ----------- 66
           ++++ G PGSGKST  E +      P      D     I  G+    +            
Sbjct: 11  ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 70

Query: 67  -CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD   +  +    F  L  P   +H +VL   A   I R + R
Sbjct: 71  IAADVAGRYAKEGYFVILDG-VVRPDWLPAFTALARP---LHYIVLRTTAAEAIERCLDR 126

Query: 126 IEHE 129
               
Sbjct: 127 GGDS 130

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTI--NKGKSGTKV--- 65
           K++ +I  G  G GKST C+ +                  +        +      +   
Sbjct: 2   KKLYIIT-GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWK 60

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQR--TDFVKLGGPEVDVHAVVLDLPAKLCISRSV 123
                  + L     V LD      E       V+    +V++  ++L    +  + R  
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 124 KRIEHEG 130
            R + E 
Sbjct: 121 LRKKDEQ 127

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Length = 126

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS 642
           D  +  +D+ P+A  H LV+ +   + +++   +    +L  +  VG K A     +   
Sbjct: 36  DQALAFHDISPQAPTHFLVIPK-KHISQISAAEDADESLLGHLMIVGKKCAADLGLKK-- 92

Query: 643 LAFRL----GYHSAPSMRQLHLHVI 663
             +R+    G     S+  +HLHV+
Sbjct: 93  -GYRMVVNEGSDGGQSVYHVHLHVL 116

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 28/179 (15%)

Query: 19  KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKVQCLT 69
           + I +++ G  G+GK+T      +        I  D+             + G      T
Sbjct: 31  QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYT 90

Query: 70  SASS----------ALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLDLPAKLC 118
              +              G ++ ++      +      +L   +  +V   ++    +L 
Sbjct: 91  KDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS 150

Query: 119 ISRSVKRIEHEGNLQGGKAA--------AVVNRMLQKKELPKLSEGFSRITLCQNENDV 169
              ++ R E    +   +A          +VN ++      +    F RI + Q +   
Sbjct: 151 YLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQRDRSC 209

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* 3oxk_A* Length = 117

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS 642
           D++    D+ P A  HILV+ +   +  L ++  E+   +  +        +K   E   
Sbjct: 28  DEIFAFKDINPIAPIHILVIPK-QHIASLNEITEENEAFIGKVLYKVSLIGKKECPEG-- 84

Query: 643 LAFRL----GYHSAPSMRQLHLHVI 663
             +R+    G  +  +++ +H H++
Sbjct: 85  --YRVVNNIGEDAGQTVKHIHFHIL 107

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 25/129 (19%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-----------NKGKSGTKVQCL-- 68
           ++I+ G   +GKS     +      PW     D++             G        +  
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 69  ------------TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAK 116
                           +  + G  + +D   L      +  +    ++DV  V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 117 LCISRSVKR 125
           +   R   R
Sbjct: 125 VAEGRETAR 133

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A* Length = 119

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHEDA 641
           D V    D+ P+A  HIL++     +  + DV  EH Q L  M  V  K AE+  + ED 
Sbjct: 24  DLVTAFRDISPQAPTHILIIPN-ILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED- 81

Query: 642 SLAFRL----GYHSAPSMRQLHLHVI 663
              +RL      H    +  +H+H++
Sbjct: 82  --GYRLIMNTNRHGGQEVYHIHMHLL 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	761
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	100.0
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.93
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.93
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.93
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.93
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.92
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.92
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.92
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.92
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	99.91
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.9
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	99.89
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.89
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.89
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.89
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.89
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	99.89
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.88
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.86
4gua_A	670	Non-structural polyprotein; viral precursor polypr	99.85
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	99.83
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	99.82
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	99.74
4egu_A	119	Histidine triad (HIT) protein; structural genomics	99.73
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	99.71
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.69
3oj7_A	117	Putative histidine triad family protein; hydrolase	99.69
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	99.66
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	99.65
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	99.63
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.62
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	99.61
2fg1_A	158	Conserved hypothetical protein BT1257; structural	99.61
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	99.58
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	99.57
3imi_A	147	HIT family protein; structural genomics, infectiou	99.57
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	99.56
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	99.56
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	99.56
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	99.56
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	99.55
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	99.53
2oik_A	154	Histidine triad (HIT) protein; HIT-like fold, stru	99.52
3r6f_A	135	HIT family protein; structural genomics, seattle s	99.51
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.48
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.46
3ohe_A	137	Histidine triad (HIT) protein; structural genomics	99.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.35
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.35
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.34
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.32
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	99.31
3i24_A	149	HIT family hydrolase; structural genomics, PSI-2,	99.31
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.3
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.29
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.28
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.27
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.26
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.25
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.21
3nrd_A	135	Histidine triad (HIT) protein; structural genomics	99.21
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.21
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.2
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.2
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.18
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	99.18
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	99.18
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.17
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.17
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.17
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.17
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.17
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.16
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.15
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.14
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.14
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.14
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.14
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.13
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.12
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.1
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.08
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.03
3i4s_A	149	Histidine triad protein; hydrolase, phosphatase, H	99.01
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.01
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	98.99
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.96
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	98.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.94
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.91
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.91
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	98.89
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.88
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	98.88
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.88
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.86
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	98.86
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.83
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	98.83
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.81
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.8
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.8
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.78
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	98.78
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.75
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	98.74
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.72
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.68
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	98.67
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.66
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.66
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.66
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.66
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.64
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.62
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.6
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.59
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.59
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.58
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.58
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.58
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.57
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.57
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.53
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.51
1via_A	175	Shikimate kinase; structural genomics, transferase	98.49
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.47
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.47
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.44
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.38
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.37
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	98.36
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.35
4gua_A	670	Non-structural polyprotein; viral precursor polypr	98.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.34
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.32
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.31
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.31
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.31
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.29
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.28
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.25
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.22
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.21
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.21
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.2
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.19
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.19
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.15
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.15
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.14
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.14
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.12
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.09
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.07
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.06
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.96
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.92
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.92
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.92
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.9
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.89
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.88
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.82
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.8
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.78
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	97.75
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.75
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.65
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	97.64
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.63
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.49
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.47
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.45
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.45
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.38
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.35
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.21
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.15
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.14
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.12
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.11
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.1
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.03
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.02
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.02
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.88
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.78
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.76
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.73
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.73
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.71
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.68
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.67
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.65
2fg1_A	158	Conserved hypothetical protein BT1257; structural	96.61
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.57
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.55
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.52
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.5
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.49
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.48
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.37
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.34
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.31
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.28
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.26
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.25
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.22
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.21
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.21
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.2
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.12
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.08
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.05
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.05
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.96
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.95
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.92
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.9
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.8
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.8
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.79
3bos_A	242	Putative DNA replication factor; P-loop containing	95.78
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.77
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.76
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	95.76
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.74
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.72
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.72
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.7
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.7
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.7
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	95.67
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.55
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.54
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.44
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.43
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.43
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.38
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.38
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.3
2pof_A	227	CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM0	95.22
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.09
2xxa_A	433	Signal recognition particle protein; protein trans	95.08
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.08
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	95.03
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.01
3co5_A	143	Putative two-component system transcriptional RES	95.01
3pvs_A	447	Replication-associated recombination protein A; ma	94.93
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	94.9
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.84
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.76
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.7
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.65
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.54
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.54
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.49
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.44
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.4
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	94.38
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	94.37
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.36
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	94.34
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	94.33
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	94.32
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.27
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.22
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.19
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.16
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.12
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	94.11
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.05
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.0
1ard_A	29	Yeast transcription factor ADR1; transcription reg	93.97
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.93
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.84
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.84
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.84
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.83
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.81
2og2_A	359	Putative signal recognition particle receptor; nuc	93.74
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.73
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.66
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.65
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	93.63
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.62
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.61
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.6
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.52
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.48
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.44
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	93.42
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	93.4
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.39
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	93.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.31
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.3
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	93.28
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.25
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	93.15
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.15
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	93.14
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	93.13
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.1
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.07
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.06
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.05
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.03
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.99
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	92.97
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.94
1u94_A	356	RECA protein, recombinase A; homologous recombinat	92.91
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	92.86
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.85
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	92.85
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	92.75
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	92.75
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.75
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.75
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.73
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.71
2r6a_A	454	DNAB helicase, replicative helicase; replication,	92.71
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.7
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.7
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	92.69
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.66
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.63
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	92.62
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.59
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	92.52
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	92.52
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.5
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	92.46
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.46
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.45
2fna_A	357	Conserved hypothetical protein; structural genomic	92.43
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.41
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	92.41
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.41
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.38
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.37
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	92.37
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	92.37
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.36
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.35
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.34
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	92.32
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.3
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	92.3
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	92.3
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	92.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	92.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.29
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	92.27
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	92.26
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.25
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	92.23
1paa_A	30	Yeast transcription factor ADR1; transcription reg	92.22
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	92.2
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	92.18
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	92.17
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	92.17
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.14
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.13
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	91.36
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.07
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.03
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	92.02
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	91.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.99
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.98
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	91.97
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	91.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.96
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	91.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	91.93
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	91.92
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.86
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.85
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.84
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.84
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	91.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	91.78
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	91.77
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	91.77
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.77
1b0u_A	262	Histidine permease; ABC transporter, transport pro	91.75
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	91.73
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.71
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	90.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	91.7
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.69
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.65
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.64
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.62
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	91.61
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	91.61
1g6h_A	257	High-affinity branched-chain amino acid transport	91.6
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	91.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	91.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	91.57
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.53
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	91.52
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.51
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.5
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.48
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.45
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	91.44
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.43
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.43
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	91.41
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.41
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	91.41
1sgw_A	214	Putative ABC transporter; structural genomics, P p	91.41
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	91.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.35
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.35
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	91.33
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.33
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.32
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	91.28
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.27
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	91.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	91.26
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.23
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	91.21
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	91.2
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.19
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	91.18
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.18
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.18
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	91.15
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.12
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.11
2ghi_A	260	Transport protein; multidrug resistance protein, M	91.11
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.09
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.08
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.06
2z43_A	324	DNA repair and recombination protein RADA; archaea	91.05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.05
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.04
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	91.04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.03
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.03
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.97
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	90.97
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	90.97
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	90.95
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	90.93
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	90.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	90.92
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.86
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	90.81
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.79
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.79
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	90.75

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=100.00  E-value=2.4e-49  Score=396.53  Aligned_cols=173  Identities=27%  Similarity=0.457  Sum_probs=147.7

Q ss_pred             cchhHHHHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCH---HHHHHHHHHHHHHH-HH
Q 004319          557 WGSWAQALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRN---EHLQILQTMHAVGM-KW  632 (761)
Q Consensus       557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~---e~l~lL~~m~~~~~-~~  632 (761)
                      -.+||++|+.||.+||++|. +|||||.++||+|+||+|++|+||||| +|+.++.++.+   ++.+++.+|..++. +.
T Consensus         3 ~msw~~~L~~yi~~Pe~~p~-~v~edd~~~af~D~~P~a~~H~LVIPk-~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~   80 (204)
T 3sp4_A            3 HMSFRDNLKVYIESPESYKN-VIYYDDDVVLVRDMFPKSKMHLLLMTR-DPHLTHVHPLEIMMKHRSLVEKLVSYVQGDL   80 (204)
T ss_dssp             CCSGGGTTHHHHHCGGGCTT-EEEECSSEEEEECSSCSSSSEEEEEEC-CTTTTTSCHHHHHHHCHHHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHHhcChhhCCC-EEEEcCCEEEEeCCCCCCCccEEEEec-cccCcccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            35799999999999999999 999999999999999999999999999 79999886554   46888999999888 64


Q ss_pred             HHHhhc------------cCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcC
Q 004319          633 AEKFLH------------EDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG  700 (761)
Q Consensus       633 ~~~~~~------------~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g  700 (761)
                      +++...            .+....|++|||++|||+||||||||+||+|++||+|||||||||+|||+++   ..|+..+
T Consensus        81 l~~~~~~~~~~~~~~~~~~~~~~~i~~GfHa~PSm~HLHLHVIS~Df~s~~lK~kkH~NSF~T~fFv~~~---~~l~~~~  157 (204)
T 3sp4_A           81 SGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKID---TPTSNLP  157 (204)
T ss_dssp             HHHHHHHHHHHSCTTCCHHHHHTTEEEEEESSCSSSSCCEEEEESCCCCTTCCSHHHHHHHHSTTEEETT---CCGGGCC
T ss_pred             HHHHHhhhhhhhcccCCcCCeeeeEeccCCCCCcccceeEEEeccCCCChhhCccchhcccChhhhccch---hhhhhcc
Confidence            443221            1112379999999999999999999999999999999999999999999999   2345555


Q ss_pred             CCCccchhhhc-cCCcccccCCCCCCC-hHHHHHHHhhc
Q 004319          701 KATLKDYDSLL-SMELRCHRCRSAHPS-IPRLKSHISSC  737 (761)
Q Consensus       701 ~~~~~~~~~~l-~~~l~C~~C~~~~~n-~~~LK~Hl~~~  737 (761)
                      +....   .+| ++||+||+|+++|+| ||+||+||+.+
T Consensus       158 ~~~~~---~~l~~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          158 TRGTL---TSLFQEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             CGGGG---GGGGGSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             ccCHh---hhhcCCCceeCCCCchhhcccHHHHHHHHHH
Confidence            43322   556 999999999999999 99999999865

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=236.94  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=106.6

Q ss_pred             cccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc--CCCCCCCEEEecCC
Q 004319          338 KHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA--KSLYPGNSVIVPLP  415 (761)
Q Consensus       338 ~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~--~~~~~G~avvT~l~  415 (761)
                      .+.+|.+|+|++||||++.      +||||||||..|.+++|||++||+++||++|++||+++.  +.+++|++++|+  
T Consensus        34 ~t~~g~~I~i~~GDIt~~~------vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~--  105 (221)
T 3q71_A           34 VSPGGLQMLLVKEGVQNAK------TDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTS--  105 (221)
T ss_dssp             ECTTCCEEEEEESCGGGCC------SSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEE--
T ss_pred             eecCCcEEEEEeCcccCCc------CCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEc--
Confidence            4778999999999999997      999999999999647899999999999999999999974  479999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                           +++|+|+||||+|||.|+...        ....++|++||++||++|     .|||||+++
T Consensus       106 -----g~~Lp~k~VIHtVgP~~~~~~--------~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIs  158 (221)
T 3q71_A          106 -----SWNLDCRYVLHVVAPEWRNGS--------TSSLKIMEDIIRECMEITESLSLKSIAFPAIG  158 (221)
T ss_dssp             -----CTTSSSSEEEEECCCCCTTTC--------HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             -----CCCCCCCEEEEeCCCCCcCCC--------chHHHHHHHHHHHHHHHHHHhCCceEeecccc
Confidence                 588999999999999997642        245789999999999987     499999997

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.93  E-value=3.9e-27  Score=231.11  Aligned_cols=109  Identities=27%  Similarity=0.273  Sum_probs=100.0

Q ss_pred             eEEEEEEccccc----ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 004319          343 KKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (761)
Q Consensus       343 ~~l~v~~GDIt~----~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~  415 (761)
                      .+|++++||||+    +.      +||||||||+.|. +||||++||+++||++|++||+++.   ++|++|++++|+  
T Consensus        10 ~~i~l~~GDIt~~~~~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--   80 (168)
T 3eti_A           10 GKVSFYQGDLDVLINFLE------PDVLVNAANGDLR-HVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFE--   80 (168)
T ss_dssp             TTEEEEESCHHHHHHHHC------CSEEEEEECTTCC-CCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEE--
T ss_pred             CeEEEEeCcccccCCCCC------CCEEEeCCCcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEec--
Confidence            578999999999    65      9999999999999 8999999999999999999999974   789999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK  476 (761)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~  476 (761)
                           ++ |+|+||||+|||.|+..          +..++|++||+++|+.+.|||||++|
T Consensus        81 -----g~-l~~~~VIHtVgP~~~~~----------~~~~~L~~~y~~~L~~~~SIAfP~Is  125 (168)
T 3eti_A           81 -----NV-LEHLSVMNAVGPRNGDS----------RVEGKLCNVYKAIAKCDGKILTPLIS  125 (168)
T ss_dssp             -----EE-ETTEEEEEEECCCTTST----------THHHHHHHHHHHHHTSCSCEEECCTT
T ss_pred             -----CC-CCccEEEEecCCCCCcc----------hHHHHHHHHHHHHHHhcCceeecccc
Confidence                 36 88899999999999542          35789999999999999999999997

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=234.46  Aligned_cols=117  Identities=31%  Similarity=0.367  Sum_probs=105.4

Q ss_pred             ccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 004319          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (761)
Q Consensus       339 ~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~  415 (761)
                      ..+|.+|+|++||||++.      +||||||||+.|. ++|||++||+++||++|++||+++.   +.+++|++++|+  
T Consensus        33 ~~~g~~I~v~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~--  103 (214)
T 3q6z_A           33 LAPGVVLIVQQGDLARLP------VDVVVNASNEDLK-HYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISK--  103 (214)
T ss_dssp             EETTEEEEEEECCTTSCS------SSEEEEEECTTCC-CCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEE--
T ss_pred             cCCCcEEEEEecccccCc------CCEEEeCCCCCCC-CCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEc--
Confidence            456899999999999997      9999999999999 8999999999999999999999874   789999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                           +++|+|+||||+|||.|+...       ..+..++|++||++||++|     .|||||+++
T Consensus       104 -----~~~L~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~Is  157 (214)
T 3q6z_A          104 -----AGKLPYHHVIHAVGPRWSGYE-------APRCVYLLRRAVQLSLCLAEKYKYRSIAIPAIS  157 (214)
T ss_dssp             -----CTTSSSSEEEEEECCCCCGGG-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred             -----CCCCCCCEEEEecCCcccCCC-------cchHHHHHHHHHHHHHHHHHHcCCcEEEECccc
Confidence                 588999999999999997532       1235689999999999997     499999997

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.93  E-value=1.6e-25  Score=223.42  Aligned_cols=112  Identities=34%  Similarity=0.439  Sum_probs=102.1

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP  419 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~  419 (761)
                      .+|+|++||||++.      +|||||+||+.|. +||||++||+++||++|++||+++.   +.+++|++++|+      
T Consensus         3 ~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~------   69 (184)
T 1spv_A            3 TRIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL------   69 (184)
T ss_dssp             CCEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC------
T ss_pred             CeEEEEeCcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEee------
Confidence            57899999999996      9999999999999 8999999999999999999999974   789999999999      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       420 ~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                       +++|+|++|||+|||.|+....        ...++|++||++||++|     .|||||+++
T Consensus        70 -~~~L~~k~VIH~vgP~~~~~~~--------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is  122 (184)
T 1spv_A           70 -AGDLPAKAVVHTVGPVWRGGEQ--------NEDQLLQDAYLNSLRLVAANSYTSVAFPAIS  122 (184)
T ss_dssp             -CTTSSSSEEEEECCCCCSSSSS--------SHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred             -CCCCCCCEEEEEcCCcccCCCc--------chHHHHHHHHHHHHHHHHHhCCceEEecccc
Confidence             5889999999999999976432        35789999999999997     499999886

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.92  E-value=2e-25  Score=224.30  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=103.1

Q ss_pred             cCCeEEEEEEcccccc---cccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 004319          340 INPKKFFTFVGDITRL---YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (761)
Q Consensus       340 ~~~~~l~v~~GDIt~~---~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~  413 (761)
                      ..+.+|+|++||||++   .      +|||||+||+.|. +||||++||+++||++|++||+++.   +.|++|++++|+
T Consensus        16 ~~~~~i~i~~GDIt~~~~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~   88 (193)
T 2xd7_A           16 VLGQKLSLTQSDISHIGSMR------VEGIVHPTTAEID-LKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQ   88 (193)
T ss_dssp             TTSCEEEEEECCGGGGGGCC------CSEEEEEECTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCCCEEEEEeCcccccCCCC------CCEEEECCCccCC-CccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEee
Confidence            4568999999999999   6      9999999999999 8999999999999999999999863   789999999999


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                             +++|+|+||||+|||.|+..          ...++|++||++||++|     .|||||+++
T Consensus        89 -------~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is  139 (193)
T 2xd7_A           89 -------SSGLAAKFVIHCHIPQWGSD----------KCEEQLEETIKNCLSAAEDKKLKSVAFPPFP  139 (193)
T ss_dssp             -------CTTSSSSEEEEEECCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred             -------CCCCCCCEEEEECCCcCCCc----------chHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence                   58899999999999999632          35789999999999987     589999886

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.92  E-value=2.1e-25  Score=224.14  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=102.8

Q ss_pred             cCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCC
Q 004319          340 INPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPS  416 (761)
Q Consensus       340 ~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~  416 (761)
                      ..+.+|+|++||||++.      +|||||+||+.|. +||||++||+++||++|++||+++.   +.|++|++++|+   
T Consensus        16 ~~~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~---   85 (193)
T 1yd9_A           16 FLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA---   85 (193)
T ss_dssp             TTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE---
T ss_pred             CCCCEEEEEeCccCcCc------CCEEEECCCccCC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec---
Confidence            34689999999999997      9999999999999 8999999999999999999999863   789999999999   


Q ss_pred             CCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          417 TSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       417 ~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                          +++|+|+||||+|||.|+..          ...++|++||++||++|     .|||||+++
T Consensus        86 ----~~~L~~k~VIH~vgP~~~~~----------~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is  136 (193)
T 1yd9_A           86 ----GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIG  136 (193)
T ss_dssp             ----CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred             ----CCCCCCCEEEEeCCCCcCCc----------chHHHHHHHHHHHHHHHHHhCCceEeecccc
Confidence                58899999999999999631          35789999999999987     589999986

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.92  E-value=2.2e-25  Score=221.76  Aligned_cols=110  Identities=24%  Similarity=0.295  Sum_probs=102.2

Q ss_pred             HhhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEec
Q 004319          334 KAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVP  413 (761)
Q Consensus       334 ~~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~  413 (761)
                      +.+++++++.+|+|++||||++.      +|||||+||+.|. ++|||++||+++||++|++||+++ +.+++|++++|+
T Consensus        13 ~~~~~~ig~~~i~i~~GDIt~~~------~DaIVNaaN~~l~-~ggGV~~aI~~aaG~~l~~ec~~~-~~~~~G~a~iT~   84 (183)
T 4abl_A           13 GVYEMKIGSIIFQVASGDITKEE------ADVIVNSTSNSFN-LKAGVSKAILECAGQNVERECSQQ-AQQRKNDYIITG   84 (183)
T ss_dssp             TCEEEEETTEEEEEEESCGGGCB------CSEEEEEECTTSC-CCSTHHHHHHHHHCHHHHHHHHHH-HHHSCCSEEEEE
T ss_pred             CceEEEECCEEEEEEeCcccCcc------cCEEEECCCCCCC-CCccHHHHHHHHhhHHHHHHHHHh-cCCCCCceEEec
Confidence            45678899999999999999997      9999999999999 899999999999999999999987 679999999999


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                             +++|+|+||||+|||.|                  |++||++||++|     .|||||+++
T Consensus        85 -------~~~L~~k~VIH~vgP~~------------------L~~~y~~~L~~a~~~~~~SIAfP~Is  127 (183)
T 4abl_A           85 -------GGFLRCKNIIHVIGGND------------------VKSSVSSVLQECEKKNYSSICLPAIG  127 (183)
T ss_dssp             -------CTTSBSSEEEEEETTSC------------------HHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             -------CCCCCCCEEEEeCcHHH------------------HHHHHHHHHHHHHHcCCCeEeecccc
Confidence                   58899999999999954                  999999999987     589999987

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.92  E-value=3e-25  Score=229.09  Aligned_cols=113  Identities=32%  Similarity=0.350  Sum_probs=102.4

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (761)
                      +.+|+|++||||++.      +|||||+||..|. +||||++||+++||++|++||+++ +.|++|++++|+       +
T Consensus        61 ~~~i~i~~GDIt~~~------vDaIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~-g~~~~G~a~iT~-------~  125 (235)
T 2x47_A           61 NEKISLLRSDITKLE------VDAIVNAANSSLL-GGGGVDGCIHRAAGPLLTDECRTL-QSCKTGKAKITG-------G  125 (235)
T ss_dssp             HTTEEEEESCGGGEE------SSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHTS-CCCCBTCEEEEE-------C
T ss_pred             CCEEEEEeCccCccc------CCEEEEecCcccC-CccHHHHHHHHHhCHHHHHHHHHh-CCCCCCceEEec-------C
Confidence            467999999999997      9999999999999 999999999999999999999986 789999999999       5


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      ++|+|+||||+|||.|++..       .....++|++||++||++|     .|||||+++
T Consensus       126 ~~L~~k~VIH~vgP~~~~~~-------~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~Is  178 (235)
T 2x47_A          126 YRLPAKYVIHTVGPIAYGEP-------SASQAAELRSCYLSSLDLLLEHRLRSVAFPCIS  178 (235)
T ss_dssp             TTSSSSEEEEEBCCCCTTCC-------CHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCCCCCEEEEecCccccCCC-------CcchHHHHHHHHHHHHHHHHHhCCceEEecccc
Confidence            88999999999999997532       2356789999999999987     589999986

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=99.91  E-value=4e-25  Score=220.45  Aligned_cols=107  Identities=23%  Similarity=0.334  Sum_probs=97.4

Q ss_pred             CeEEEEEEccccc----ccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecC
Q 004319          342 PKKFFTFVGDITR----LYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPL  414 (761)
Q Consensus       342 ~~~l~v~~GDIt~----~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l  414 (761)
                      +.+|++++||||+    +.      +||||||||+.|. +||||++||+++||++|++||+++.   ++|++|++++|+ 
T Consensus        37 ~~~i~l~~GDIt~~~~~~~------vDAIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~-  108 (193)
T 3ejg_A           37 HDNVAFYQGDVDTVVNGVD------FDFIVNAANENLA-HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVE-  108 (193)
T ss_dssp             ETTEEEEECCHHHHHHHCC------CSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccCcCCC------cCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec-
Confidence            4679999999999    55      9999999999999 8999999999999999999999863   789999999999 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK  476 (761)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~  476 (761)
                            +++|   +|||+|||.|+.           ...++|++||++||+...|||||++|
T Consensus       109 ------~~~L---~VIHtVGP~~~~-----------~~~~~L~~~y~~~L~~~~SIAfPaIs  150 (193)
T 3ejg_A          109 ------CDSL---RIFNVVGPRKGK-----------HERDLLIKAYNTINNEQGTPLTPILS  150 (193)
T ss_dssp             ------ETTE---EEEEEECCCSST-----------THHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred             ------CCCe---eEEEecCCCCCc-----------hHHHHHHHHHHHHHHhcCceeecccc
Confidence                  3666   999999999953           25789999999999988999999997

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=99.89  E-value=4.3e-24  Score=212.24  Aligned_cols=109  Identities=27%  Similarity=0.356  Sum_probs=97.3

Q ss_pred             CeEEEEEEcccccc----cccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecC
Q 004319          342 PKKFFTFVGDITRL----YTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPL  414 (761)
Q Consensus       342 ~~~l~v~~GDIt~~----~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l  414 (761)
                      +.+|+|++||||++    .      +|||||+||+.|. +||||++||+++||++|++||+++   .+++++|++++|+ 
T Consensus        19 ~~~i~i~~GDIt~~~~~~~------vDAIVNaAN~~l~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~-   90 (182)
T 2acf_A           19 TDNVAIKCVDIVKEAQSAN------PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS-   90 (182)
T ss_dssp             SSSEEEEESCHHHHHHHHC------CSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE-
T ss_pred             CCeEEEEeCcccccccCCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEee-
Confidence            36799999999999    6      9999999999999 899999999999999999999986   3889999999999 


Q ss_pred             CCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319          415 PSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK  476 (761)
Q Consensus       415 ~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~  476 (761)
                            +++|+ ++|||+|||.|+...          ..++|++||+++ ....|||||++|
T Consensus        91 ------~~~L~-~~VIH~vgP~~~~~~----------~~~~L~~~y~~~-~~~~SIAfP~Is  134 (182)
T 2acf_A           91 ------GHNLA-KKCLHVVGPNLNAGE----------DIQLLKAAYENF-NSQDILLAPLLS  134 (182)
T ss_dssp             ------CTTTC-SEEEEECCCCGGGTC----------CTTHHHHHHHGG-GGSSEEEECCTT
T ss_pred             ------CCCCC-ceEEEECCCCCCCCc----------hHHHHHHHHHHh-cCCCEEEECCcc
Confidence                  46784 899999999997431          357899999998 567899999997

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.89  E-value=1.7e-23  Score=204.10  Aligned_cols=108  Identities=28%  Similarity=0.304  Sum_probs=99.1

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (761)
                      .+|++++||||++.      +|||||+||..|. +||||++||++++|++|+++|+++ +++++|++++|+       ++
T Consensus         2 ~~i~i~~GDI~~~~------~daIVnaaN~~l~-~ggGv~~aI~~~~G~~l~~~c~~~-g~~~~G~a~it~-------~~   66 (159)
T 2dx6_A            2 ARIRVVQGDITEFQ------GDAIVNAANNYLK-LGAGVAGAILRKGGPSIQEECDRI-GKIRVGEAAVTG-------AG   66 (159)
T ss_dssp             CEEEEEESCGGGCC------SSEEEEEEETTCC-CCSTTHHHHHHHHCTHHHHHHHHH-CCCCTTCEEEEE-------CT
T ss_pred             eEEEEEECcCCcCC------CCEEEECCCCCCC-CCchHHHHHHHHhCHHHHHHHHhc-CCCCCCcEEEec-------CC
Confidence            47899999999996      9999999999999 899999999999999999999987 789999999999       48


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      +|+|++|||+|||.|+ .          ...++|++||+++|++|     .|||||+++
T Consensus        67 ~L~~~~Vih~vgp~~~-~----------~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ig  114 (159)
T 2dx6_A           67 NLPVRYVIHAAVLGDE-P----------ASLETVRKATKSALEKAVELGLKTVAFPLLG  114 (159)
T ss_dssp             TSSSSEEEEEEEESSS-C----------CCHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred             CCCCCEEEEEeCCCCC-C----------chHHHHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence            8999999999999996 2          13789999999999987     499999886

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.89  E-value=7.4e-24  Score=207.72  Aligned_cols=105  Identities=29%  Similarity=0.398  Sum_probs=93.0

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~  421 (761)
                      ..+|+|++||||++.      +|||||+||+.|. +||||++||+++||++++      .+.|++|++++|+.       
T Consensus         3 ~~~i~v~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~-------   62 (168)
T 3gqe_A            3 APSYHVVRGDIATAT------EGVIINAANSKGQ-PGGGVCGALYKKFPESFD------LQPIEVGKARLVKG-------   62 (168)
T ss_dssp             CCEEEEEESCGGGCC------SSEEEEEECTTSC-CTTGGGSHHHHHCGGGCC------CCCCCTTCEEEECC-------
T ss_pred             CCeEEEEeCcccCcc------cCEEEeCCCcccC-CCccHHHHHHHHhhHHhc------CCCcCCCcEEEEcC-------
Confidence            468999999999997      9999999999999 899999999999999875      37899999999993       


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                         +|+||||+|||.|+...       ..++.++|++||+++|++|     .|||||++|
T Consensus        63 ---~~k~VIH~VgP~~~~~~-------~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~Is  112 (168)
T 3gqe_A           63 ---AAKHIIHAVGPNFNKVS-------EVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLS  112 (168)
T ss_dssp             ---TTCCEEEEECCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTT
T ss_pred             ---CCCEEEEcCCCccCCCC-------chhHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence               36999999999997642       2345689999999999987     599999997

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.89  E-value=6.4e-24  Score=208.04  Aligned_cols=104  Identities=24%  Similarity=0.232  Sum_probs=90.8

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (761)
                      ...+|++||||++.      +|||||+||+.|. +||||++||+++||++++      .+.|++|++++|+.        
T Consensus        10 ~~~~~~~GDIt~~~------vDAIVNaAN~~l~-~ggGV~~aI~~aaG~~l~------~~~~~~G~a~iT~~--------   68 (168)
T 3gpg_A           10 PSYRVKRMDIAKND------EECVVNAANPRGL-PGDGVCKAVYKKWPESFK------NSATPVGTAKTVMC--------   68 (168)
T ss_dssp             CCC-CEESCGGGCC------SSCEEEECCTTCC-CCSHHHHHHHHHCGGGGT------TCCCCTTCEEEEEE--------
T ss_pred             CceEEEeCcCCccc------CCEEEeCCCcccC-CCchHHHHHHHHhhHHhh------cCCCCCCCEEEecC--------
Confidence            45679999999997      9999999999999 899999999999999874      37899999999993        


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                        +|++|||+|||.|+...       ..++.++|++||++||++|     .|||||++|
T Consensus        69 --~~k~VIHtVGP~~~~~~-------~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~Is  118 (168)
T 3gpg_A           69 --GTYPVIHAVGPNFSNYS-------ESEGDRELAAAYREVAKEVTRLGVNSVAIPLLS  118 (168)
T ss_dssp             --TTEEEEEECCCCTTTSC-------HHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTT
T ss_pred             --CCCEEEEeCCCCcCCCC-------cchHHHHHHHHHHHHHHHHHHhCCcEEEECccc
Confidence              36999999999997642       2345689999999999987     599999997

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.89  E-value=2e-23  Score=212.40  Aligned_cols=117  Identities=28%  Similarity=0.274  Sum_probs=105.2

Q ss_pred             hhhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhc----HHHHHHHHHh---cCC--CC
Q 004319          335 AAQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAG----PALEVATAER---AKS--LY  405 (761)
Q Consensus       335 ~~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG----~~l~~e~~~~---~~~--~~  405 (761)
                      ..+.++++.+|+|++||||++.      +|||||+||+.|. +||||++||+++||    ++|+++|+++   .++  ++
T Consensus        13 ~~~~~~~~~~i~i~~GDIt~~~------vDaIVNaaN~~l~-~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~   85 (211)
T 1vhu_A           13 LFEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYID   85 (211)
T ss_dssp             EEEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             hhheeECCEEEEEEecccCcCC------CCEEEECCCcccc-CccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCccc
Confidence            4556889999999999999996      9999999999999 89999999999999    9999999985   266  99


Q ss_pred             CCCEEEecCCCCCCCCCCCCc---cEEEEecCC----CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhcc
Q 004319          406 PGNSVIVPLPSTSPLCGREGV---THVIHVLGP----NMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRS  473 (761)
Q Consensus       406 ~G~avvT~l~~~~~~~~~l~~---k~VIH~VGP----~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~  473 (761)
                      +|++++|+       +++|++   +||||+|||    .|++           ...++|++||++||++|     .|||||
T Consensus        86 ~G~a~iT~-------~~~L~~~g~k~VIH~vgP~~~~~~~~-----------~~~~~L~~~y~~~L~~A~~~~i~SIAfP  147 (211)
T 1vhu_A           86 HGEVVVTP-------AMNLEERGIKYVFHTVGPICSGMWSE-----------ELKEKLYKAFLGPLEKAEEMGVESIAFP  147 (211)
T ss_dssp             TTCCEEEE-------CGGGGGGTCCEEEEEECCCCTTCCCH-----------HHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCcEEEEE-------CCCCCccCcCEEEEecCCccccccCc-----------chHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence            99999999       478888   999999999    8832           35789999999999987     589999


Q ss_pred             ccc
Q 004319          474 QEK  476 (761)
Q Consensus       474 ~~~  476 (761)
                      +++
T Consensus       148 ~Is  150 (211)
T 1vhu_A          148 AVS  150 (211)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            886

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=99.89  E-value=1.6e-23  Score=207.00  Aligned_cols=111  Identities=25%  Similarity=0.290  Sum_probs=96.6

Q ss_pred             CeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCC
Q 004319          342 PKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTS  418 (761)
Q Consensus       342 ~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l~~~~  418 (761)
                      +.+|++++||||++..  +.++|||||+||+.|. +||||++||+++||++|++||+++   .+.+++|++++|+.    
T Consensus        16 ~~~i~i~~GDIt~~~~--~~~~DaIVNaaN~~l~-~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~----   88 (174)
T 2vri_A           16 YKNVKFYLGDISHLVN--CVSFDFVVNAANENLL-HGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLEC----   88 (174)
T ss_dssp             ETTEEEEESCHHHHTT--TSCCSEEEEEECTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEC----
T ss_pred             CCeEEEEecccccccc--CCCccEEEECCCccCC-CCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEEC----
Confidence            3579999999999821  1129999999999999 999999999999999999999986   37899999999992    


Q ss_pred             CCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319          419 PLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK  476 (761)
Q Consensus       419 ~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~  476 (761)
                         ++|   +|||+|||.|..          . ..++|++||+++|+...|||||+++
T Consensus        89 ---~~l---~VIH~vgP~~~~----------~-~~~~L~~~y~~~L~~~~SIAfP~Is  129 (174)
T 2vri_A           89 ---EKF---NVFNVVGPRTGK----------H-EHSLLVEAYNSILFENGIPLMPLLS  129 (174)
T ss_dssp             ---SSC---EEEEEECCCSST----------T-HHHHHHHHHHHHHHSSSCEEEECSS
T ss_pred             ---CCC---EEEEEcCCCCCc----------c-hHHHHHHHHHHHHhhCCcEEeCccc
Confidence               444   999999999942          1 5789999999999988899999997

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.88  E-value=1.2e-23  Score=207.34  Aligned_cols=117  Identities=23%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             ccCCeEEEEEEcccccccccC--CccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEec
Q 004319          339 HINPKKFFTFVGDITRLYTGG--GLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVP  413 (761)
Q Consensus       339 ~~~~~~l~v~~GDIt~~~~~g--~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~  413 (761)
                      .-++.+|++++||||++..+.  +.++||||||||+.|. ++|||++||+++||++|++||+++.   |+++   +++|+
T Consensus        10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~-~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~   85 (176)
T 3ejf_A           10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMT-HGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTP   85 (176)
T ss_dssp             CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCC-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEEC
T ss_pred             CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccC-CCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecc
Confidence            345789999999999996211  1125679999999999 8999999999999999999999874   6676   88998


Q ss_pred             CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHhhccccc
Q 004319          414 LPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEG-FLSIVRSQEK  476 (761)
Q Consensus       414 l~~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~-a~siaf~~~~  476 (761)
                             ++.+.+++|||+|||.|...          ...++|++||+++|+. ..|||||++|
T Consensus        86 -------G~~l~t~~VIHtVGP~~~~~----------~~~~~L~~~y~~~L~~~~~SIAfPaIs  132 (176)
T 3ejf_A           86 -------SFVKGIQCVNNVVGPRHGDN----------NLHEKLVAAYKNVLVDGVVNYVVPVLS  132 (176)
T ss_dssp             -------CCSTTEEEEEEECCCCTTCS----------CHHHHHHHHHHTTCCTTCCEEEEECCC
T ss_pred             -------cccccCCEEEEeCCCCCCCc----------cHHHHHHHHHHHHHHcCCcEEEECccc
Confidence                   57889999999999999532          2578999999999984 6899999997

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.86  E-value=3.1e-22  Score=211.07  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=110.7

Q ss_pred             CeEEEEecccccchhhHHHHHHhhhc--ccCCeEEEEEEccccccc---ccCCc----cccEEEeCCCCCCcCCCChhhH
Q 004319          313 NARLVLVDLTQGSKILSLVRAKAAQK--HINPKKFFTFVGDITRLY---TGGGL----CCNVIANAANWRLKPGGGGVNA  383 (761)
Q Consensus       313 ~i~~v~vD~~~~s~~ls~v~~~~~~~--~~~~~~l~v~~GDIt~~~---~~g~~----~~daIVNaaN~~L~~~~gGV~~  383 (761)
                      .++++++|.++..  ...+. .....  ..++.+|+|++||||++.   .+|++    .+||||||||+.|. +||||++
T Consensus        16 ~m~i~l~d~~~~~--v~a~~-~~~~~~~~~~~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~-~gGGVd~   91 (284)
T 1njr_A           16 KMRIILCDTNEVV--TNLWQ-ESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGGFDK   91 (284)
T ss_dssp             CCEEEEEESCHHH--HHHHH-HHCC-------CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSSHHH
T ss_pred             cceEEEECCCHHH--HHHHH-HHhhhhcCCCCCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCC-CCchHHH
Confidence            4678888777633  11111 11111  113568999999999991   12333    39999999999999 9999999


Q ss_pred             HHHHhhc-HHHHHHHHHh--cCCCCCCCEEEecCCCC---CCCCCCCCccEEEEecCCCCCCCC-CCCCCCCchhhHHHH
Q 004319          384 AIFSAAG-PALEVATAER--AKSLYPGNSVIVPLPST---SPLCGREGVTHVIHVLGPNMNPRR-PNCLDGDYVKGCEIL  456 (761)
Q Consensus       384 AI~~aAG-~~l~~e~~~~--~~~~~~G~avvT~l~~~---~~~~~~l~~k~VIH~VGP~~~~~~-~~~l~~~~~~~~~~L  456 (761)
                      ||+++|| +.|+++|+++  .+.+++|++++|+....   +-.+.+|+|+||||+|||.|.... .+. .+.+....++|
T Consensus        92 AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~-~~p~~~~~~~L  170 (284)
T 1njr_A           92 ALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP-QNPLKTGFEPV  170 (284)
T ss_dssp             HHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT-TCHHHHTHHHH
T ss_pred             HHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCccc-ccccccHHHHH
Confidence            9999975 7889999986  37799999999993100   000028999999999999996531 100 00001346899


Q ss_pred             HHHHHHHHHHH----HHhhccccc
Q 004319          457 RKAYTSLFEGF----LSIVRSQEK  476 (761)
Q Consensus       457 ~~ay~~~L~~a----~siaf~~~~  476 (761)
                      ++||++||+.|    .|||||+++
T Consensus       171 ~~~~~~~L~~ae~~i~SIAfPaIs  194 (284)
T 1njr_A          171 FNAMWNALMHSPKDIDGLIIPGLC  194 (284)
T ss_dssp             HHHHHHHHHTSCTTCSEEEECCTT
T ss_pred             HHHHHHHHHHHHhCCCEEEECccc
Confidence            99999999975    799999886

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=99.85  E-value=5.4e-22  Score=219.21  Aligned_cols=104  Identities=20%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPLCG  422 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~~~  422 (761)
                      ..+.|++||||+..      +||||||||..|. +||||++||+++||+++.+      +.+++|+|++|+..       
T Consensus       344 PsfrIIRgDITk~~------vDAIVNAANtsL~-gGgGVdGAIhraaG~~ll~------~~~~tG~AkIT~g~-------  403 (670)
T 4gua_A          344 PSYRTKRENIADCQ------EEAVVNAANPLGR-PGEGVCRAIYKRWPTSFTD------SATETGTARMTVCL-------  403 (670)
T ss_dssp             CCEEEECSCGGGCC------SSEEEEECCTTCC-CCSSHHHHHHHHCGGGGTT------CCCCTTCEEEEEET-------
T ss_pred             cceeEEeccccccc------cCEEEeCCCCCCC-CcCCHhHHHHHHhhHHHhc------CCCCcceEEEecCC-------
Confidence            46999999999997      9999999999999 8999999999999998875      57899999999932       


Q ss_pred             CCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       423 ~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                         .+||||||||+|++..       ..+..++|++||+++|++|     .|||||+||
T Consensus       404 ---aKyIIHtVGPvw~~g~-------~~E~~~lLascYrnsLkLA~e~~~kSIAFPLIS  452 (670)
T 4gua_A          404 ---GKKVIHAVGPDFRKHP-------EAEALKLLQNAYHAVADLVNEHNIKSVAIPLLS  452 (670)
T ss_dssp             ---TEEEEEECCCCTTSSC-------HHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred             ---CceEEEcCCCCccCCC-------CchHHHHHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence               2999999999998753       2344579999999999997     589999997

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*

Probab=99.83  E-value=1.2e-20  Score=198.32  Aligned_cols=131  Identities=18%  Similarity=0.280  Sum_probs=114.7

Q ss_pred             cchhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHH
Q 004319          557 WGSWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAV  628 (761)
Q Consensus       557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~  628 (761)
                      .-.|..++..-.+.++    .+||+|++    ||+|.|++    |.+..|+|+||++++|.|++||+++|+++|++|...
T Consensus       136 ~l~Wv~nIl~~~~E~e----~ilyeD~d~~~gFvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~  211 (301)
T 3bl9_A          136 SIQWVYNILDKKAEAD----RIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQ  211 (301)
T ss_dssp             CCHHHHHHHTTSSSGG----GCCEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHH
T ss_pred             chhHHHHHhhCCCccc----cEEEecCCCCcCEEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHH
Confidence            4579776655545555    49999988    99999988    889999999999767999999999999999999999


Q ss_pred             HHHHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319          629 GMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK  701 (761)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~  701 (761)
                      +.+++.+... .....+++|||+.|||.|||||||+.+|.+++++.+|       .||+  ++||++|+.+|.
T Consensus       212 ~~~~i~~~y~-~~~~~~rlgfHy~PS~yHLHlHvis~~~~s~~~~~~k-------A~lL--ddVI~~Le~~g~  274 (301)
T 3bl9_A          212 GQEAILQRYR-MKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVER-------AHLL--AEVIENLECDPR  274 (301)
T ss_dssp             HHHHHHHHHC-CCGGGEEEEEESSCSSSSCEEEEEETTSCCTTCBTTT-------EEEH--HHHHHHHHHCTT
T ss_pred             HHHHHHHhcC-CChHHeEEEecCCCCcceEEEEEEecCCCCCccccce-------eeeH--HHHHHHHHhCCc
Confidence            9999987643 2345799999999999999999999999999999998       7777  999999999885

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*

Probab=99.82  E-value=2.3e-20  Score=198.35  Aligned_cols=131  Identities=21%  Similarity=0.298  Sum_probs=112.7

Q ss_pred             cchhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHH
Q 004319          557 WGSWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAV  628 (761)
Q Consensus       557 ~~~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~  628 (761)
                      .-.|..++..-...++.    +||+|++    ||+|.|++    |.+..|+|+||++++|.|++||+++|+++|++|...
T Consensus       183 ~l~Wv~nIl~~~~E~e~----vlyeD~d~~~gFvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~  258 (350)
T 1vlr_A          183 SIQWVYNILDKKAEADR----IVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILRE  258 (350)
T ss_dssp             CCHHHHHHHTC----CC----CSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHH
T ss_pred             chhHHHHHhhCCCcccc----EEEecCCCCCCeEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHH
Confidence            45697766655555554    9999988    99999988    889999999999767999999999999999999999


Q ss_pred             HHHHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcCC
Q 004319          629 GMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHGK  701 (761)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g~  701 (761)
                      +.+++.+... .....+++|||+.|||.|||||||+.+|.+++++.+|       .||+  ++||++|+..|.
T Consensus       259 ~~~ii~~~yg-~~~~~lRlgfHy~PS~yHLHlHvis~~~~s~~l~~~K-------A~lL--ddVI~nLe~~g~  321 (350)
T 1vlr_A          259 GQEAILKRYQ-VTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVER-------AHLL--AQVIENLECDPK  321 (350)
T ss_dssp             HHHHHHHHHC-CCGGGEEEEEESSCSSSSCEEEEEETTSCCTTCBTTT-------EEEH--HHHHHHHHHCTT
T ss_pred             HHHHHHHhcC-CChHHeEEEecCCCCcceEEEEEEeccCCCCccccCe-------eeeH--HHHHHHHHhCCC
Confidence            9999987643 2345799999999999999999999999999999998       7777  999999998875

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*

Probab=99.74  E-value=5.8e-18  Score=157.16  Aligned_cols=95  Identities=26%  Similarity=0.355  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hcc-CCceeeeecccC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHE-DASLAFRLGYHS  651 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~-~~~~~~~~G~ha  651 (761)
                      .|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|+..+++++++. +.. +++..++.|..+
T Consensus        15 ~~~~iv~ede~~~af~d~~P~~pgH~LViPk-~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ni~~n~g~~a   93 (119)
T 3n1s_A           15 IPSDIVYQDDLVTAFRDISPQAPTHILIIPN-ILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHG   93 (119)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTTCEEEEEEEHHHH
T ss_pred             CcCCEEEECCCEEEEECCCCCCCCeEEEEeh-hHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCc
Confidence            4678999999999999999999999999999 8999999999999999999999999988763 333 334456677778


Q ss_pred             CCcccceeeeeecCCccc
Q 004319          652 APSMRQLHLHVISQDFNS  669 (761)
Q Consensus       652 ~pSv~HLHlHVIs~d~~s  669 (761)
                      +++|+|||+|||++.--.
T Consensus        94 gq~V~HlH~Hiipr~~~~  111 (119)
T 3n1s_A           94 GQEVYHIHMHLLGGRPLG  111 (119)
T ss_dssp             TCCSSSCCEEEEESSCCC
T ss_pred             CCCcCEEEEEEeCCcccC
Confidence            999999999999875443

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}

Probab=99.73  E-value=1.2e-17  Score=154.80  Aligned_cols=99  Identities=23%  Similarity=0.334  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hc-cCCceeeeecccC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LH-EDASLAFRLGYHS  651 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~-~~~~~~~~~G~ha  651 (761)
                      .|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|...+.++++.. .. .+++..++.|..+
T Consensus        16 ~~~~iv~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ni~~n~g~~a   94 (119)
T 4egu_A           16 IPSTKVYEDDRVLAFNDLNPVAPYHILVVPK-KHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDG   94 (119)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHHHHCEEEEEEETTTT
T ss_pred             CCCCEEEECCCEEEEECCCCCCCceEEEEec-hhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCC
Confidence            4678999999999999999999999999999 8999999999999999999999888887764 22 2445567777778


Q ss_pred             CCcccceeeeeecCCccccccc
Q 004319          652 APSMRQLHLHVISQDFNSKHLK  673 (761)
Q Consensus       652 ~pSv~HLHlHVIs~d~~s~~lk  673 (761)
                      +++|+|||+|||++.-.+++.|
T Consensus        95 gq~v~HlH~Hiip~~~~~~~~~  116 (119)
T 4egu_A           95 GQEVKHLHYHILAGKKLPNYEA  116 (119)
T ss_dssp             TCCSCSCCEEEEESSCCCCGGG
T ss_pred             CCCcCEEEEEEeCCcccCccCc
Confidence            8899999999999876655544

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A

Probab=99.71  E-value=1.5e-17  Score=155.96  Aligned_cols=100  Identities=18%  Similarity=0.321  Sum_probs=83.5

Q ss_pred             HHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-C
Q 004319          563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-A  641 (761)
Q Consensus       563 ~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~  641 (761)
                      -+.+++..  ..|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++..+|.+|+..+++++++....+ +
T Consensus        18 iFC~i~~~--e~~~~iv~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~   94 (126)
T 3o1c_A           18 IFGKIIRK--EIPAKIIFEDDQALAFHDISPQAPTHFLVIPK-KHISQISAAEDADESLLGHLMIVGKKCAADLGLKKGY   94 (126)
T ss_dssp             HHHHHHHT--SSCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCE
T ss_pred             CcchhhcC--CCcCCEEEECCCEEEEECCCCCCCceEEEEec-hHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence            34455543  24678999999999999999999999999999 89999999999999999999999999888765433 3


Q ss_pred             ceeeeecccCCCcccceeeeeecC
Q 004319          642 SLAFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       642 ~~~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                      +..+|.|..++|+|+|||+|||++
T Consensus        95 ni~~n~g~~agq~v~HlH~Hiipr  118 (126)
T 3o1c_A           95 RMVVNEGSDGGQSVYHVHLHVLGG  118 (126)
T ss_dssp             EEECCCHHHHTCCSSSCCEEEEES
T ss_pred             EEEEecCCccCCccCEeEEEEeCC
Confidence            444666666788999999999986

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.69  E-value=1e-16  Score=179.21  Aligned_cols=143  Identities=24%  Similarity=0.341  Sum_probs=127.0

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~   95 (761)
                      ..+.|.+|+|+|+|||||||+|++|++.++  +.+|+.|.+     ..+..+...+.+.+..|..||+|++|....+|..
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~--~~~i~~D~~-----~~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~  326 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR  326 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGT--CEECCGGGS-----CSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--cEEEccchH-----HHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence            455788999999999999999999999988  888999998     3566677888899999999999999999999999


Q ss_pred             HHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCCh
Q 004319           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNE  166 (761)
Q Consensus        96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~  166 (761)
                      ++++ +..++.+.+|+|++|.++|.+|+.+|..+.. ....++++++.++.+.+++|...|+|+.|+.++-.
T Consensus       327 ~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~~  397 (416)
T 3zvl_A          327 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDP-SHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFR  397 (416)
T ss_dssp             HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCT-TCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECCC
T ss_pred             HHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEecc
Confidence            9999 8888889999999999999999999987432 23467899999999999999999999999998753

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*

Probab=99.69  E-value=5.1e-17  Score=150.14  Aligned_cols=91  Identities=16%  Similarity=0.317  Sum_probs=77.0

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP  653 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p  653 (761)
                      .|..+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|...+++++++.+..+++..++.|-.+++
T Consensus        19 ~~~~iv~e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~g~ni~~n~g~~agq   97 (117)
T 3oj7_A           19 IPSTIVYEDDEIFAFKDINPIAPIHILVIPK-QHIASLNEITEENEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQ   97 (117)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTTTC
T ss_pred             CCCCEEEECCcEEEEECCCCCCCceEEEEec-hHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCCCCCe
Confidence            4678999999999999999999999999999 899999999999999999999988888776333333334455555777


Q ss_pred             cccceeeeeecC
Q 004319          654 SMRQLHLHVISQ  665 (761)
Q Consensus       654 Sv~HLHlHVIs~  665 (761)
                      +|+|+|+|||++
T Consensus        98 ~v~H~H~Hiipr  109 (117)
T 3oj7_A           98 TVKHIHFHILGG  109 (117)
T ss_dssp             CSSSCCEEEEES
T ss_pred             eeeEEEEEEeCC
Confidence            999999999986

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=99.65  E-value=1.5e-16  Score=153.44  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=88.9

Q ss_pred             CCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhcCCCCCCCEEEecCCCCCCC
Q 004319          341 NPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL  420 (761)
Q Consensus       341 ~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~~~~~~G~avvT~l~~~~~~  420 (761)
                      ++.+|++++||||+..     .+|+|||++|..+. +||||++||++++| ++ .+|.+  +.+++|++++|+.      
T Consensus         7 ~~~~i~~v~GDIt~~~-----~~daIVnaaN~~~~-~G~Gva~ai~~~~p-~~-~~~~~--~~~~~G~a~it~~------   70 (149)
T 2eee_A            7 GGSRITYVKGDLFACP-----KTDSLAHCISEDCR-MGAGIAVLFKKKFG-GV-QELLN--QQKKSGEVAVLKR------   70 (149)
T ss_dssp             SSCCCEEECSCSSSSC-----SSCEEEEEEETTCC-CCSTTHHHHHHHTC-CH-HHHHT--TCCCTTCEEEEES------
T ss_pred             CCeeEEEEecccccCC-----CCcEEEEEeCCCCC-cCCcHHHHHHHHCc-HH-HHHhc--ccCCCccEEEEEc------
Confidence            4678999999999974     26999999999999 99999999999995 45 57765  6799999999993      


Q ss_pred             CCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-----Hhhccccc
Q 004319          421 CGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL-----SIVRSQEK  476 (761)
Q Consensus       421 ~~~l~~k~VIH~VGP~-~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~-----siaf~~~~  476 (761)
                          +.++|||++||. |.. .+         ..+.|++||+++|+.|.     |||||.++
T Consensus        71 ----~~~~Vih~v~~~~~~~-~~---------~~~~l~~~l~~~l~~a~~~~~~sIa~P~Ig  118 (149)
T 2eee_A           71 ----DGRYIYYLITKKRASH-KP---------TYENLQKSLEAMKSHCLKNGVTDLSMPRIG  118 (149)
T ss_dssp             ----SSSEEEEEEEESSTTS-CC---------CHHHHHHHHHHHHHHHHHHTCCEEECCCCC
T ss_pred             ----CCCEEEEEEecCCCCC-CC---------CHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence                249999999998 654 22         36899999999999864     89999775

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1

Probab=99.63  E-value=6.9e-16  Score=148.42  Aligned_cols=99  Identities=19%  Similarity=0.349  Sum_probs=80.9

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhc-c-CC
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLH-E-DA  641 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~-~-~~  641 (761)
                      +.+++..  ..|..+|||||.++||.|++|.+++|+||||| +|+.++.+|++++..+|.+|..+++++++.... . ++
T Consensus        39 FC~ii~~--e~~~~iV~e~e~~~af~d~~P~~pgH~LViPk-rHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gy  115 (147)
T 1xqu_A           39 FCKIIKR--ELPSTIYYEDERVIAIKDINPAAPVHVLIIPK-EHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY  115 (147)
T ss_dssp             HHHHHTT--SSCBCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCE
T ss_pred             ccccccC--CCCcEEEEECCcEEEEEecCCCCccEEEEEeC-cccCChhHCCHHHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            4455543  34678999999999999999999999999999 899999999999988999999999988877642 2 23


Q ss_pred             ceeeeecccCCCcccceeeeeecC
Q 004319          642 SLAFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       642 ~~~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                      +..++.|..++++|+|||+|||++
T Consensus       116 ni~~n~g~~aGq~v~HlHlHiiP~  139 (147)
T 1xqu_A          116 RLITNCGVAAGQTVFHLHYHLLGG  139 (147)
T ss_dssp             EEECCCSTTTTCCSCSCCEEEEES
T ss_pred             EEEEecCcccCCCccEEEEEEeCC
Confidence            334455555677999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.62  E-value=9.8e-16  Score=149.17  Aligned_cols=129  Identities=22%  Similarity=0.291  Sum_probs=102.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH-HcCCCeEEEecccccC---CC-------CCcH-H-----HHHHHHHHHH---HCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR-SSARPWARICQDTINK---GK-------SGTK-V-----QCLTSASSAL---KKG   78 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~-~~~~~~~~I~~D~i~~---~~-------~~~~-~-----~~~~~~~~~L---~~g   78 (761)
                      +|.+|+|+|+|||||||+|+.|++ .++  +.+++.|.++.   +.       +... .     .+...+...+   ..|
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            468999999999999999999998 566  88899888742   11       1111 1     1225566777   789


Q ss_pred             CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccC
Q 004319           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSE  155 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~E  155 (761)
                      ..||+|+++....+|..|.++ ...++.+.+|+|++|.++|.+|+.+|..+      ..+++.+.++++.++.|...+
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~------~~~~~~i~~~~~~~~~~~~~~  150 (181)
T 1ly1_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLP  150 (181)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHHHHTCC
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC------CCCHHHHHHHHHHhhccCCCC
Confidence            999999999999999999887 66777788999999999999999999864      467899999999998775444

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}

Probab=99.61  E-value=2.8e-15  Score=144.45  Aligned_cols=99  Identities=18%  Similarity=0.222  Sum_probs=76.3

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHh-hccCC-
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKF-LHEDA-  641 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~-~~~~~-  641 (761)
                      +.+++..  ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++. +..++ 
T Consensus         9 FC~i~~~--e~~~~iv~e~~~~~af~d~~p~~pgh~lViPk-~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~   85 (149)
T 3o0m_A            9 FCAIVSG--DAPAIRIYEDENFLGILDIRPFTRGHTLVIPK-THTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGN   85 (149)
T ss_dssp             HHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEE
T ss_pred             cCccccC--CCCCCEEEECCCEEEEEcCCCCCCCeEEEEec-hhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            3344443  24678999999999999999999999999999 7999999999998777777666666655554 44433 


Q ss_pred             ceeeeecccCCCcccceeeeeecC
Q 004319          642 SLAFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       642 ~~~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                      +..++.|-.++++|+|||+|||.+
T Consensus        86 ni~~n~g~~aGq~v~HlHiHiiPR  109 (149)
T 3o0m_A           86 NIAINDGKAAFQTVFHIHLHVVPR  109 (149)
T ss_dssp             EEECCCSGGGTCCSSSCCEEEEEE
T ss_pred             EEEEecCCCCCCccceEEEEEECC
Confidence            223444445778999999999996

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=99.61  E-value=8.3e-16  Score=149.62  Aligned_cols=116  Identities=15%  Similarity=0.037  Sum_probs=90.6

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHh---cCCCCCCCEEEecCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAER---AKSLYPGNSVIVPLPSTSP  419 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~---~~~~~~G~avvT~l~~~~~  419 (761)
                      +.|++++||||+...   .++|+|||++|..+. +||||++||++++ |++++++++.   .+.+++|++++|+.     
T Consensus         4 M~i~~v~GDit~~~~---~~~daIvn~~N~~~~-~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~-----   73 (158)
T 2fg1_A            4 MEILYIKGDATAPIG---SGVKVITHICNDIGG-WGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNV-----   73 (158)
T ss_dssp             CCCEEEESCTTSCCS---SSCEEEEEEEETTCC-CCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEE-----
T ss_pred             eEEEEEecccCCCCC---CCCeEEEEEecCCCC-cCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEec-----
Confidence            478899999999310   127999999999999 9999999999999 6777776653   25899999999983     


Q ss_pred             CCCCCCccEEEEecCCC-CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH----Hhhccccc
Q 004319          420 LCGREGVTHVIHVLGPN-MNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL----SIVRSQEK  476 (761)
Q Consensus       420 ~~~~l~~k~VIH~VGP~-~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~----siaf~~~~  476 (761)
                       .+   .++|||++||. |...+..    ......+.|++||+++++.|.    |||||.++
T Consensus        74 -~~---~~~Vi~~v~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig  127 (158)
T 2fg1_A           74 -EN---KLYVANMIGQHGIYKDSKG----LPPIRYDAVRQCLKEVALFTIAHKASVHMPRIG  127 (158)
T ss_dssp             -ET---TEEEEEEEEESSSSCCTTC----CCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTT
T ss_pred             -CC---CeEEEEEEEEcccCCCCCC----CccccHHHHHHHHHHHHHHHHHhCCeEEecCcC
Confidence             11   29999999998 7543210    011247899999999999875    89999775

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2.4e-15  Score=153.41  Aligned_cols=113  Identities=16%  Similarity=0.308  Sum_probs=86.1

Q ss_pred             CCCCCcchhHHHHHhhhcC--------CC-----------CCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChh
Q 004319          552 STSKAWGSWAQALYRTAMY--------PE-----------RHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLA  612 (761)
Q Consensus       552 ~~~~~~~~w~~~L~~~~~~--------Pe-----------~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~  612 (761)
                      .+..-|++||..+...-..        ++           ..|+.+||+|+.++||.|+||.+++|+||||| +|+.++.
T Consensus        41 ~m~~l~~p~r~~y~~~~~~~~~~~~~~~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~LVIPk-rHv~~l~  119 (218)
T 3ano_A           41 QLQRLWTPYRMNYLAEAPVKRDPNSSASPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPY-RRVSELE  119 (218)
T ss_dssp             SCCCCCCCCC-------------------CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCEEEEES-SCCCCGG
T ss_pred             hhhhcccchHHHHhcCCCcccccccCCCCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEEEEEec-hhhCChh
Confidence            3556899999875421111        01           13457999999999999999999999999999 8999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCCcc-cceeeeeecC
Q 004319          613 DVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAPSM-RQLHLHVISQ  665 (761)
Q Consensus       613 dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~pSv-~HLHlHVIs~  665 (761)
                      +|++++...|..+...+.+.+++.+..++ +..++.|..++++| +|||+|||++
T Consensus       120 dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR  174 (218)
T 3ano_A          120 DLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPR  174 (218)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcc
Confidence            99999999999999999988888765543 23345555567899 9999999986

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*

Probab=99.57  E-value=5.5e-15  Score=141.92  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CCC-CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeeccc
Q 004319          573 RHK-DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYH  650 (761)
Q Consensus       573 ~~p-~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~h  650 (761)
                      .+| +.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +..++.|-.
T Consensus         9 ~ip~~~iv~e~~~~~a~~d~~p~~pgh~LViPk-~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~   87 (147)
T 1fit_A            9 LIKPSVVFLKTELSFALVNRKPVVPGHVLVCPL-RPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPE   87 (147)
T ss_dssp             EECGGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGG
T ss_pred             ccCCcEEEEECCCEEEEECCCCCCCcEEEEEEc-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence            344 56999999999999999999999999999 799999999999977777666666666555544432 233444555


Q ss_pred             CCCcccceeeeeecC
Q 004319          651 SAPSMRQLHLHVISQ  665 (761)
Q Consensus       651 a~pSv~HLHlHVIs~  665 (761)
                      ++++|+|||+|||++
T Consensus        88 agq~v~HlH~HiiPr  102 (147)
T 1fit_A           88 AGQTVKHVHVHVLPR  102 (147)
T ss_dssp             GTCCSSSCCEEEEEE
T ss_pred             cCCCccEEEEEEECC
Confidence            678999999999986

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1

Probab=99.57  E-value=6.9e-15  Score=141.34  Aligned_cols=101  Identities=12%  Similarity=0.059  Sum_probs=79.3

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-Cc
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-AS  642 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~  642 (761)
                      +.+++..  ..|+.+|||||.+++|.|.+|.+++|+||||| +|+.++.+|+++++..|..+.....+.+++.+..+ .+
T Consensus        13 fC~i~~~--e~~~~iV~e~~~~~a~~d~~p~~pgh~lViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n   89 (147)
T 3imi_A           13 FCKIIDG--QILCSKVYEDEHVLAFLDISQVTKGHTLVIPK-VHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFN   89 (147)
T ss_dssp             HHHHHTT--SSCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEE
T ss_pred             CcccccC--CCcCCEEEECCCEEEEEcCCCCCCcEEEEEEe-eccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            3445443  34678999999999999999999999999999 89999999999987776666655555555554443 34


Q ss_pred             eeeeecccCCCcccceeeeeecCCc
Q 004319          643 LAFRLGYHSAPSMRQLHLHVISQDF  667 (761)
Q Consensus       643 ~~~~~G~ha~pSv~HLHlHVIs~d~  667 (761)
                      ..++.|..++++|+|+|+|||++--
T Consensus        90 i~~n~g~~aGq~v~HlHiHiiPR~~  114 (147)
T 3imi_A           90 LLNNNGEKAGQTVFHFHLHLIPRYG  114 (147)
T ss_dssp             EEEEESGGGTCCSSSCCEEEEEECS
T ss_pred             EEEeCCcccCCCcCEEEEEEeCCcc
Confidence            4567777888899999999999743

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0

Probab=99.56  E-value=7.4e-15  Score=141.55  Aligned_cols=91  Identities=13%  Similarity=0.167  Sum_probs=71.0

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSA  652 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~  652 (761)
                      .|+.+|||||.++||.|++|.++||+||||| +|+.++.+|+++++..|..+.+...+.+++...+++ +..++.|..++
T Consensus        23 ip~~iV~ed~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aG  101 (149)
T 3ksv_A           23 IPCAKVAETSKALAFMDINPLSRGHMLVIPK-EHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAH  101 (149)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTT
T ss_pred             CCccEEEECCCEEEEECCCCCCCCEEEEEeC-hhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccC
Confidence            4678999999999999999999999999999 799999999998866655555544444444333332 33445555667


Q ss_pred             CcccceeeeeecC
Q 004319          653 PSMRQLHLHVISQ  665 (761)
Q Consensus       653 pSv~HLHlHVIs~  665 (761)
                      ++|+|+|+|||++
T Consensus       102 q~v~HlHiHiiPR  114 (149)
T 3ksv_A          102 QEVPHVHFHIIPK  114 (149)
T ss_dssp             CCSSSCCEEEEEE
T ss_pred             CCCCEEEEEEEec
Confidence            7999999999986

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=99.56  E-value=9.2e-15  Score=138.87  Aligned_cols=96  Identities=21%  Similarity=0.238  Sum_probs=75.0

Q ss_pred             HHHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 004319          563 ALYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS  642 (761)
Q Consensus       563 ~L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~  642 (761)
                      -+.+++..  ..|+.+|||||.+++|.|++|.++||+||||| +|+.++.+|+++++..|..+.....+.+++.+..++ 
T Consensus         8 iFC~i~~~--e~p~~iV~e~~~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~-   83 (138)
T 3p0t_A            8 IFTKIINR--ELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTER-   83 (138)
T ss_dssp             HHHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred             hhhHHhcC--CCCcCEEEeCCCEEEEecCCCCCCcEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence            34455553  35678999999999999999999999999999 799999999998877776666655555555544432 


Q ss_pred             eeeeecccCCCcccceeeeeecC
Q 004319          643 LAFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       643 ~~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                        +++. .++++|+|||+|||++
T Consensus        84 --~n~~-~~gq~v~HlH~HiiPr  103 (138)
T 3p0t_A           84 --SGLI-IAGLEVPHLHVHVFPT  103 (138)
T ss_dssp             --EEEE-ECCSSCSSCCEEEEEE
T ss_pred             --CcEE-ECCcccCEEEEEEecc
Confidence              3332 4788999999999987

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}

Probab=99.56  E-value=1.1e-14  Score=140.00  Aligned_cols=88  Identities=17%  Similarity=0.282  Sum_probs=73.0

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeccc---
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYH---  650 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~h---  650 (761)
                      .|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+.+.+..++   +++++|   
T Consensus        11 ~~~~iv~e~~~~~a~~d~~p~~pgh~lViPk-~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~---~ni~~n~g~   86 (149)
T 2eo4_A           11 LEGYFVYEDEKFAAILDKYPVSLGHTLVIPK-KHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADG---LRLLTNIGR   86 (149)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSE---EEEECCCSG
T ss_pred             CCccEEEECCCEEEEECCCCCCCCeEEEEec-hhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCC---eEEEEecCc
Confidence            4678999999999999999999999999999 799999999999988777777666666665554433   555554   


Q ss_pred             -CCCcccceeeeeecC
Q 004319          651 -SAPSMRQLHLHVISQ  665 (761)
Q Consensus       651 -a~pSv~HLHlHVIs~  665 (761)
                       ++++|+|||+|||++
T Consensus        87 ~~gq~v~HlHiHviPr  102 (149)
T 2eo4_A           87 SAGQVIFHLHVHIIPT  102 (149)
T ss_dssp             GGTCCSCSCCEEEEEE
T ss_pred             CCCCCcCEEEEEEECC
Confidence             567999999999975

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}

Probab=99.56  E-value=1.5e-14  Score=141.25  Aligned_cols=99  Identities=22%  Similarity=0.257  Sum_probs=78.9

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-c
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-S  642 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~  642 (761)
                      +.+++..  ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +
T Consensus        32 FC~i~~~--e~p~~iV~e~e~~~af~d~~P~~pgH~LViPk-~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~n  108 (161)
T 3lb5_A           32 FAKLIRN--EIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPK-KGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGIT  108 (161)
T ss_dssp             HHHHHTT--SSCCCEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccC--CCCccEEEECCCEEEEECCCcCCCcEEEEEEe-eccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            4555553  35678999999999999999999999999999 799999999999877776666655555555544433 3


Q ss_pred             eeeeecccCCCcccceeeeeecC
Q 004319          643 LAFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       643 ~~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                      ..++.|-.++++|+|||+|||.+
T Consensus       109 i~~n~g~~aGq~V~HlHiHiiPR  131 (161)
T 3lb5_A          109 VMQFNEAASQQTVYHLHFHIIPR  131 (161)
T ss_dssp             EEEEESGGGTCCSCSCCEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEEEcc
Confidence            45666777788999999999986

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}

Probab=99.55  E-value=1.9e-14  Score=141.94  Aligned_cols=101  Identities=11%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             HHhhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-c
Q 004319          564 LYRTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-S  642 (761)
Q Consensus       564 L~~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~  642 (761)
                      +.+++..  ..|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|..+.....+.+.+.+..++ +
T Consensus        40 FC~Ii~~--e~p~~iV~e~e~~~afld~~P~~pgH~LVIPk-rHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~n  116 (173)
T 3l7x_A           40 FCKIVAG--DIPSSKVYEDEDVLAFLDISQATKGHTLVIPK-EHVRNALEMTQTQAANLFARIPKIARALQKATKADGLN  116 (173)
T ss_dssp             HHHHHHT--SSCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccC--CCCceEEEECCCEEEEEcCCCCCCcEEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            4455543  34677999999999999999999999999999 799999999999877666666555555555444433 3


Q ss_pred             eeeeecccCCCcccceeeeeecCCc
Q 004319          643 LAFRLGYHSAPSMRQLHLHVISQDF  667 (761)
Q Consensus       643 ~~~~~G~ha~pSv~HLHlHVIs~d~  667 (761)
                      ..++.|..++++|+|||+|||++--
T Consensus       117 i~~n~g~~aGq~V~HlHiHiIPR~~  141 (173)
T 3l7x_A          117 IINNNEETAGQTVFHAHVHLVPRFA  141 (173)
T ss_dssp             EEECCSGGGTCCSCSCCEEEEEECC
T ss_pred             EEEecCcccCCCcCEEEEEEEeccc
Confidence            4566667778899999999998733

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1

Probab=99.53  E-value=1.7e-14  Score=138.00  Aligned_cols=92  Identities=12%  Similarity=0.129  Sum_probs=74.1

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSA  652 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~  652 (761)
                      .|+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.....+.+.+.+..++ +..++.|..++
T Consensus        17 ~~~~iv~e~~~~~a~~~~~p~~pgh~LViPk-~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g   95 (145)
T 1y23_A           17 IPSAKVYEDEHVLAFLDISQVTKGHTLVIPK-THIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAG   95 (145)
T ss_dssp             SCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGT
T ss_pred             CCCCEEEECCCEEEEECCCCCCCCeEEEEEh-hhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcCCC
Confidence            3668999999999999999999999999999 899999999999987777666665555555554433 33455555667


Q ss_pred             CcccceeeeeecCC
Q 004319          653 PSMRQLHLHVISQD  666 (761)
Q Consensus       653 pSv~HLHlHVIs~d  666 (761)
                      ++|+|||+|||++-
T Consensus        96 ~~v~HlH~HiiPr~  109 (145)
T 1y23_A           96 QSVFHYHMHIIPRY  109 (145)
T ss_dssp             CCSSSCCEEEEEEC
T ss_pred             CCcCEEEEEEEccc
Confidence            89999999999853

>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1

Probab=99.52  E-value=3.6e-14  Score=137.33  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=74.0

Q ss_pred             CCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319          575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS  654 (761)
Q Consensus       575 p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS  654 (761)
                      |+.+|||||.+++|.|++|.+++|+||||| +|+.++.+|++++...|..+.....+.+++.+..++   +|++ .++++
T Consensus        19 ~~~iv~e~~~~~a~~d~~p~~pgh~LViPk-~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g---~ni~-~~gq~   93 (154)
T 2oik_A           19 GGEILWQDALCRVVHVENQDYPGFCRVILN-RHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDK---INLA-SLGNM   93 (154)
T ss_dssp             CSEEEEECSSEEEEECCCTTCTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE---EEEE-ECCSS
T ss_pred             CCeEEEECCcEEEEEcCCCCCCeEEEEEec-CCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc---EEhH-HhCCC
Confidence            567999999999999999999999999999 899999999999988777777777777666655543   5665 46789


Q ss_pred             ccceeeeeecC
Q 004319          655 MRQLHLHVISQ  665 (761)
Q Consensus       655 v~HLHlHVIs~  665 (761)
                      ++|||+|||++
T Consensus        94 v~HlHiHiiPr  104 (154)
T 2oik_A           94 TPHVHWHVIPR  104 (154)
T ss_dssp             SCSCEEEEEEE
T ss_pred             CCEEEEEEeCC
Confidence            99999999987

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}

Probab=99.51  E-value=1.2e-14  Score=137.75  Aligned_cols=85  Identities=20%  Similarity=0.298  Sum_probs=66.3

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccC--
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHS--  651 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha--  651 (761)
                      .|+.+|||||.++||.|++|.+++|+||||| +|+.++.+|+++++..|.   ..++++.+.. ..++   +++|+|.  
T Consensus        16 ~~~~iv~e~~~~~af~d~~p~~pgh~lViPk-~H~~~l~dL~~~~~~~l~---~~~~~v~~~~-~~~~---~ni~~n~g~   87 (135)
T 3r6f_A           16 KGANIIYETDRLFALIDRYPLSKGHFLVIPK-AHHPYLHNYKPEELSGVL---DTIRHLVQKF-GFER---YNILQNNGN   87 (135)
T ss_dssp             HCCSCCEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCGGGGTTHH---HHHHHHHHHH-TCCS---EEEECCSSS
T ss_pred             CCceEEEECCCEEEEECCCCCCCCeEEEEEh-hHhCCHhHCCHHHHHHHH---HHHHHHHHHh-CCCC---eEEEEEcCC
Confidence            4567999999999999999999999999999 799999999998754443   3344444433 3332   5666655  


Q ss_pred             CCcccceeeeeecCC
Q 004319          652 APSMRQLHLHVISQD  666 (761)
Q Consensus       652 ~pSv~HLHlHVIs~d  666 (761)
                      +++|+|||+|||.+-
T Consensus        88 gq~v~HlH~HiiPR~  102 (135)
T 3r6f_A           88 HQEVFHVHFHVIPFV  102 (135)
T ss_dssp             SCSSSSCCEEEEECC
T ss_pred             CCCccEEEEEEeccc
Confidence            569999999999873

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.49  E-value=3.2e-13  Score=141.20  Aligned_cols=128  Identities=23%  Similarity=0.318  Sum_probs=100.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEecccccCCCC--Cc-HHH-----HHHHHHHHHHCCCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQDTINKGKS--GT-KVQ-----CLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~D~i~~~~~--~~-~~~-----~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ++.+|+|+|+|||||||+|+.|++.   .+..+.+++.|.++....  .. ...     ....+...+.. ..||+|+++
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~   81 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTN   81 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCc
Confidence            4579999999999999999999987   665555568898864321  11 111     12445566666 889999999


Q ss_pred             CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCcc
Q 004319           88 LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLS  154 (761)
Q Consensus        88 ~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~  154 (761)
                      +...+|..+.++ +..+....+|+|++|.++|.+|+.+|..       ..+.+.+.+++..++.|...
T Consensus        82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-------~~~~~~l~~~~~~~e~~~~~  142 (260)
T 3a4m_A           82 YYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE-------KIPNEVIKKMYEKFDEPGKK  142 (260)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC-------SSCHHHHHHHHHHCCCTTSS
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC-------CCCHHHHHHHHHHhcCcccc
Confidence            999999999888 7778888999999999999999999863       34678899999999888753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.48  E-value=8.8e-14  Score=147.50  Aligned_cols=174  Identities=20%  Similarity=0.261  Sum_probs=122.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC-------CC---CCcH-H-----HHHHHHHHHH---HCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-------GK---SGTK-V-----QCLTSASSAL---KKG   78 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~-------~~---~~~~-~-----~~~~~~~~~L---~~g   78 (761)
                      +|.+|+|+|+|||||||+|+.|++.+ +  +.+++.|.++.       ++   +... +     .+...+...+   ..|
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            36799999999999999999999874 5  88899997742       21   1111 1     1224556677   788


Q ss_pred             CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCc
Q 004319           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGF  157 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgF  157 (761)
                      ..||+|++++...+|..|.++ ...++.+.+|+|++|.+++.+|+.+|..+      .++++.+.++++.++.+...+.|
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~e~i~~~~~~~~~~~~~~~~  152 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMREYLGLPVY  152 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGG------CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCC------CCCHHHHHHHHHHHhcccCCcce
Confidence            999999999999999999888 77788888999999999999999999865      56789999999888766433322


Q ss_pred             ------eEEEEcCChhhHHHHHHHhhccCCCccccCCCCCCCCCcchhhHHHHHHHHhhC
Q 004319          158 ------SRITLCQNENDVQAALDTYSGLGPLDTLPHGSFGQKNPDAKIQLGIMKFLKKVD  211 (761)
Q Consensus       158 ------d~V~vv~~~~ei~~~l~~~~~lgp~diighGc~~~~~~~~~~~~~i~~f~~~~~  211 (761)
                            ...++++.+..+...    ....|++..  +|..     .+.-+|+..+|+...
T Consensus       153 ~~~~~~~~~i~iD~dgtl~~~----~~~~~~~~~--~~~~-----~~~~~g~~e~L~~L~  201 (301)
T 1ltq_A          153 NGTPGKPKAVIFDVDGTLAKM----NGRGPYDLE--KCDT-----DVINPMVVELSKMYA  201 (301)
T ss_dssp             CCCTTSCEEEEEETBTTTBCC----SSCCTTCGG--GGGG-----CCBCHHHHHHHHHHH
T ss_pred             eccccccceEEEeCCCCcccc----cCCCchhhh--hccc-----cCCChHHHHHHHHHH
Confidence                  234455544433221    112344432  2332     334567777777664

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.46  E-value=8.7e-13  Score=131.80  Aligned_cols=129  Identities=19%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCc---HHHHHHHHHHHHHCCCcEEEeC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGT---KVQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~---~~~~~~~~~~~L~~g~~VIID~   85 (761)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..         +....   ....+..+...+..|..||+|+
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~   93 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACG--YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSC   93 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHT--CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEEC
Confidence            4467999999999999999999999998  66788888742         22111   1223455666677889999999


Q ss_pred             CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCC
Q 004319           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEG  156 (761)
Q Consensus        86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~Eg  156 (761)
                      +++....|..+..+.  +....+|+|++|.+++.+|+.+|..+      ..+.+.+.+++..++++...+.
T Consensus        94 ~~~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~~~~~~~~~  156 (202)
T 3t61_A           94 SALKRSYRDKLRESA--PGGLAFVFLHGSESVLAERMHHRTGH------FMPSSLLQTQLETLEDPRGEVR  156 (202)
T ss_dssp             CCCSHHHHHHHHHTS--TTCCEEEEEECCHHHHHHHHHHHHSS------CCCHHHHHHHHHHCCCCTTSTT
T ss_pred             CCCCHHHHHHHHHhc--CCCeEEEEEeCCHHHHHHHHHHhhcc------CCCHHHHHHHHHhcCCCCCCCC
Confidence            999988888776652  23456899999999999999999864      2347888899888887754443

>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}

Probab=99.35  E-value=2.1e-12  Score=122.63  Aligned_cols=84  Identities=24%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHH-HHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQ-TMHAVGMKWAEKFLHEDASLAFRLGYHSAPS  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~-~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS  654 (761)
                      +.+|++++.+++|.|.+|..++|+||+|| +|+.++.||++++...|. .+..+++.+ ++....+   .+|+| .++++
T Consensus        13 ~~~v~~~~~~~v~l~~~p~~pGh~lV~~k-~h~~~l~dl~~~~~~~l~~~~~~v~~~l-~~~~~~~---~~N~~-~aGq~   86 (137)
T 3ohe_A           13 THKLGESRLCDVLLMNDNTWPWVILVPRV-SGIREIYELPNEQQQRLLFESSALSEGM-MELFGGD---KMNVA-ALGNM   86 (137)
T ss_dssp             EEEEEECSSEEEEEESCTTSCEEEEEESC-TTCCSGGGSCHHHHHHHHHHHHHHHHHH-HHHTTCS---EEEEE-ECCSS
T ss_pred             cEEEEECCcEEEEEcCCCCCCEEEEEecc-cccCChHHCCHHHHHHHHHHHHHHHHHH-HHHhCCC---eEEEe-eccCc
Confidence            46899999999999999999999999999 799999999999876444 455544444 4444443   38888 88999


Q ss_pred             ccceeeeeecC
Q 004319          655 MRQLHLHVISQ  665 (761)
Q Consensus       655 v~HLHlHVIs~  665 (761)
                      |+|+|+|||.+
T Consensus        87 V~HlH~HviPR   97 (137)
T 3ohe_A           87 VPQLHLHHIVR   97 (137)
T ss_dssp             CCSCCEEEEEE
T ss_pred             CCEEEEEEeCC
Confidence            99999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.35  E-value=4.7e-12  Score=134.55  Aligned_cols=150  Identities=14%  Similarity=0.156  Sum_probs=106.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC---------c--------HH-H-HHHHHHHHHHC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG---------T--------KV-Q-CLTSASSALKK   77 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~---------~--------~~-~-~~~~~~~~L~~   77 (761)
                      ..+|.+|+|+|+|||||||+|+.|++.++..+.+|+.|.++....+         .        +. . ....+...+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~  109 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  109 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999999999988544788999988643211         0        00 0 12345667788


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHH----HHHHHhcccccCCCCCCChHHHHHHHH----hhh
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLC----ISRSVKRIEHEGNLQGGKAAAVVNRML----QKK  148 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~----~~R~~~R~~~~~~~~~~v~~~vI~r~~----~~~  148 (761)
                      |.+||+|+++....++..+++. +..++.+.+++|.+|.+++    .+|+.+|..+.+.....++++....++    ..+
T Consensus       110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~  189 (287)
T 1gvn_B          110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNL  189 (287)
T ss_dssp             TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999998888888888 8888888889999999999    888888765432112234444444433    333


Q ss_pred             cCCCccCCceEEEEcCCh
Q 004319          149 ELPKLSEGFSRITLCQNE  166 (761)
Q Consensus       149 e~P~~~EgFd~V~vv~~~  166 (761)
                      ++......||.+++.+..
T Consensus       190 ~el~~~~~~d~v~v~d~~  207 (287)
T 1gvn_B          190 ETLHKTGLFSDIRLYNRE  207 (287)
T ss_dssp             HHHHHHTCCSCEEEECTT
T ss_pred             HHHHcCCCCCeEEEEeCC
Confidence            322224557888888764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.35  E-value=3.8e-12  Score=128.96  Aligned_cols=105  Identities=18%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHCCCcEE
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKKGKSVF   82 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~g~~VI   82 (761)
                      +|+|.|+|||||+|+|+.|++.++  +.||+..++ +                  .|...+.+-....+..++.....||
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceE
Confidence            689999999999999999999999  888986443 2                  2444455555677888888888899


Q ss_pred             EeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcccc
Q 004319           83 LDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      +|+.+.+..+...|..+ ...+..+ .+|+|++|.+++.+|+..|..+
T Consensus        80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~  127 (206)
T 3sr0_A           80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN  127 (206)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence            99999999999888766 4444433 5889999999999999999643

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.34  E-value=5.9e-14  Score=143.22  Aligned_cols=128  Identities=15%  Similarity=0.159  Sum_probs=96.5

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc-cccCCCCcccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVA  265 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  265 (761)
                      .|+-+. +.+.++++.|++.+++.........|.+.       .|.+++++|.+++|.|.|-|..+.. ..+.+....+.
T Consensus        68 gGGV~~-AI~~aaG~~L~~ec~~~~~~~~~~~G~a~-------iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~  139 (221)
T 3q71_A           68 RGPLSK-SLLEKAGPELQEELDTVGQGVAVSMGTVL-------KTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRE  139 (221)
T ss_dssp             SSHHHH-HHHHHHCTHHHHHHHHHHHTSCCCTTCEE-------EEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHH
T ss_pred             CchHHH-HHHHHHhHHHHHHHHHHhccCCCCCCeEE-------EEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHH
Confidence            455555 67888899999999987542222224443       6889999999999999988875331 22335555666


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--C---eEEEEecccc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--N---ARLVLVDLTQ  323 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~---i~~v~vD~~~  323 (761)
                      |+. .....+++|||||+||||+||||+++||++++++|++|++..+  .   |+||+++.+.
T Consensus       140 ~L~-~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~V~fv~f~~d~  201 (221)
T 3q71_A          140 CME-ITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDH  201 (221)
T ss_dssp             HHH-HHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCEEEEEECTTCH
T ss_pred             HHH-HHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeCCCH
Confidence            676 5666899999999999999999999999999999999999863  2   5566655443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.33  E-value=4.4e-12  Score=129.53  Aligned_cols=151  Identities=19%  Similarity=0.260  Sum_probs=97.9

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHH
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSAL   75 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L   75 (761)
                      ....++.+|+|.|+|||||+|+|+.|++.++  +.+|+..++ +                  .|...+.+.....+.+++
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            3556788999999999999999999999999  888986443 2                  233333344445555555


Q ss_pred             H----CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh--
Q 004319           76 K----KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK--  148 (761)
Q Consensus        76 ~----~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~--  148 (761)
                      .    ..+.||+|+.+.+..+...|... ....   .+|+|++|.+++.+|+..|....+ +.++ .++++.+.++.|  
T Consensus       102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~~e~~~~Rl~~R~~~~~-R~DD-~~e~i~~Rl~~Y~~  176 (217)
T 3umf_A          102 IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVSEEVMRKRLLKRAETSN-RVDD-NEETIVKRFRTFNE  176 (217)
T ss_dssp             HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHSCC-------CHH-HHHHHHHHHHHHHH
T ss_pred             hhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCCHHHHHHHHhcccccCC-CCCC-CHHHHHHHHHHHHH
Confidence            3    34579999999999998888766 4444   389999999999999999975322 3333 345555544433  


Q ss_pred             -cCCCc--cCCceEEEEcCChhhHHHH
Q 004319          149 -ELPKL--SEGFSRITLCQNENDVQAA  172 (761)
Q Consensus       149 -e~P~~--~EgFd~V~vv~~~~ei~~~  172 (761)
                       ..|..  ++.-..++.++...+++++
T Consensus       177 ~t~pl~~~Y~~~~~l~~Idg~~~~eeV  203 (217)
T 3umf_A          177 LTKPVIEHYKQQNKVITIDASGTVDAI  203 (217)
T ss_dssp             HTHHHHHHHHTTTCEEEEETTSCHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCHHHH
Confidence             22321  2222345666655455444

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.32  E-value=4.8e-11  Score=116.07  Aligned_cols=122  Identities=17%  Similarity=0.158  Sum_probs=86.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCcHH------H-HHHHHHHHHHCCCcEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV------Q-CLTSASSALKKGKSVF   82 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~~~------~-~~~~~~~~L~~g~~VI   82 (761)
                      +..+|+|+|+|||||||+++.|+..++  +.+++.|.+..         +......      . ....+...+..+..+|
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   84 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL   84 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEE
Confidence            346899999999999999999999888  77889888742         2211111      1 1133344455688999


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P  151 (761)
                      +|.+.+...+|..+.   ..+..+.+|+|++|.+++.+|+.+|..+.      .....+.+++..++.|
T Consensus        85 i~~~~~~~~~~~~l~---~~~~~~~vv~l~~~~e~~~~R~~~R~~~~------~~~~~~~~~~~~~~~~  144 (175)
T 1knq_A           85 IVCSALKKHYRDLLR---EGNPNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETLQEP  144 (175)
T ss_dssp             EECCCCSHHHHHHHH---TTCTTEEEEEEECCHHHHHHHHHTSTTCC------CCHHHHHHHHHHCCCC
T ss_pred             EEeCchHHHHHHHHH---hcCCCEEEEEEECCHHHHHHHHHhccCCC------CchHHHHHHHHhhhCc
Confidence            998888777666553   33345679999999999999999997542      2356677777766665

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=99.31  E-value=3.2e-12  Score=143.59  Aligned_cols=91  Identities=16%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CCC-cEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccC
Q 004319          574 HKD-DLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHS  651 (761)
Q Consensus       574 ~p~-~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha  651 (761)
                      .|+ .+|||||++++|.|++|.+++|+||||| +|+.++.+|+++++..|..+.+...+.+++.+..++ +..++.|..+
T Consensus       306 ~p~~~iv~e~~~~~a~~~~~p~~pgh~lviPk-~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~  384 (440)
T 1ems_A          306 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPK-RVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDA  384 (440)
T ss_dssp             CCGGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGG
T ss_pred             cCCceEEEECCCEEEEEcCCcCCCCeEEEEEc-cccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Confidence            444 5899999999999999999999999999 799999999999877666666655555555444432 2234444455


Q ss_pred             CCcccceeeeeecC
Q 004319          652 APSMRQLHLHVISQ  665 (761)
Q Consensus       652 ~pSv~HLHlHVIs~  665 (761)
                      +++|+|||+|||++
T Consensus       385 gq~v~HlH~Hiipr  398 (440)
T 1ems_A          385 GQTVPHVHIHILPR  398 (440)
T ss_dssp             TCCSSSCCEEEEEE
T ss_pred             CCCccEEEEEEeCC
Confidence            67999999999986

>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}

Probab=99.31  E-value=4e-12  Score=122.36  Aligned_cols=85  Identities=19%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCcc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSM  655 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pSv  655 (761)
                      +.+|++++.+++|.|.+|.++||+||+|| +|+.++.||++++...|......+.+.+++....+   .+|+| -++++|
T Consensus        13 ~~~v~~~~~~~v~L~~~p~~pGh~LV~pk-~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~---~~Ni~-~aGq~V   87 (149)
T 3i24_A           13 CIVLGNLPLCKVLLIKEDIGPWLILVPRI-EELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPD---KINIG-ALGNLV   87 (149)
T ss_dssp             EEEEEECSSEEEEEECBSSTTEEEEEESC-TTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCS---EEEEE-ECCSSC
T ss_pred             CEEEEECCCEEEEEcCCCCCCEEEEEeCc-cccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCC---eEEEh-hhhCCC
Confidence            45899999999999999999999999999 79999999999987644444444444444444444   37888 489999


Q ss_pred             cceeeeeecC
Q 004319          656 RQLHLHVISQ  665 (761)
Q Consensus       656 ~HLHlHVIs~  665 (761)
                      +|||+|||.+
T Consensus        88 ~HlH~HvIPR   97 (149)
T 3i24_A           88 PQLHIHHIAR   97 (149)
T ss_dssp             CSCCEEEEEE
T ss_pred             CEEEEEEeCC
Confidence            9999999987

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.30  E-value=3.5e-11  Score=120.26  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CCCCcHH-------HHHHHHHHHHHCCCcE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GKSGTKV-------QCLTSASSALKKGKSV   81 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~~~~~~-------~~~~~~~~~L~~g~~V   81 (761)
                      .++.+|+|+|+|||||||+++.|+..++  +.+++.|.+..         +......       .....+...+..|..+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  104 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVST  104 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCE
Confidence            3567999999999999999999999887  77788887732         2211111       1123445556788899


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEE
Q 004319           82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~  161 (761)
                      |+|...+....|..+.++   ...+.+|+|++|.+++.+|+.+|..+.      .+.+.+.+++..++++...+. +  +
T Consensus       105 iid~~~~~~~~~~~l~~~---~~~~~vv~l~~~~e~l~~Rl~~R~~~~------~~~~~l~~~~~~~~~~~~~~~-~--~  172 (200)
T 4eun_A          105 IITCSALKRTYRDVLREG---PPSVDFLHLDGPAEVIKGRMSKREGHF------MPASLLQSQLATLEALEPDES-G--I  172 (200)
T ss_dssp             EEEECCCCHHHHHHHTTS---SSCCEEEEEECCHHHHHHHHTTCSCCS------SCGGGHHHHHHHCCCCCTTSC-E--E
T ss_pred             EEEchhhhHHHHHHHHHh---CCceEEEEEeCCHHHHHHHHHhcccCC------CCHHHHHHHHHHhCCCCCCCC-e--E
Confidence            999988888777766443   224568999999999999999997642      235677888887776654443 2  3


Q ss_pred             EcCChhhHHHHHH
Q 004319          162 LCQNENDVQAALD  174 (761)
Q Consensus       162 vv~~~~ei~~~l~  174 (761)
                      ++++..+++++..
T Consensus       173 ~Id~~~~~~e~~~  185 (200)
T 4eun_A          173 VLDLRQPPEQLIE  185 (200)
T ss_dssp             EEETTSCHHHHHH
T ss_pred             EEECCCCHHHHHH
Confidence            3433334444433

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.29  E-value=7.5e-11  Score=114.75  Aligned_cols=107  Identities=18%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CCC-----------------C-cHHH----HHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS-----------------G-TKVQ----CLTSASSA   74 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~~-----------------~-~~~~----~~~~~~~~   74 (761)
                      +.+|+|+|+|||||||+|+.|++.++..+.+++.|.+.+   +..                 . .+..    ....+...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence            468999999999999999999999987777777776521   100                 0 1111    12335566


Q ss_pred             HHCCCcEEEeCCCCC-HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           75 LKKGKSVFLDRCNLE-REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        75 L~~g~~VIID~tn~~-~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      +..|..||+|.+.+. ...+..+++. +..  .+.+|+|++|.+++.+|+.+|..+
T Consensus        83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~~~e~l~~R~~~r~~~  136 (178)
T 1qhx_A           83 ARAGARIIIDDVFLGGAAAQERWRSFVGDL--DVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHHHTTC--CEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             HhcCCeEEEEeccccChHHHHHHHHHhcCC--cEEEEEEECCHHHHHHHHHhhCCc
Confidence            678889999997763 4556666666 543  356788999999999999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.28  E-value=1.1e-11  Score=121.87  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC------CCC-cHHH---------HHHHHHHHHHCCCcE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------KSG-TKVQ---------CLTSASSALKKGKSV   81 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~------~~~-~~~~---------~~~~~~~~L~~g~~V   81 (761)
                      .++.+|+|+|+|||||||+++.|++.++  +.+++.|.+++.      ... .+..         +...+...+..|..|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   80 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR--LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL   80 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC--CeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence            4578999999999999999999999988  566888877421      111 1111         112345567789999


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |+|+++.....+..+.++ ...+....+|+|++|.+++.+|+.+|..
T Consensus        81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            999988333333456555 4455677899999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.28  E-value=5.7e-11  Score=116.42  Aligned_cols=108  Identities=22%  Similarity=0.400  Sum_probs=78.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHH--
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK--   76 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~--   76 (761)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+..                   +...........+...+.  
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   81 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhC--CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence            4567999999999999999999999988  77888866521                   111112222233334443  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        77 ~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+..||+|+++....++..|... ......-.+|+|++|.+++.+|+.+|..
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~  133 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence            56789999999988888888766 4322233589999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.27  E-value=4.5e-11  Score=117.34  Aligned_cols=107  Identities=19%  Similarity=0.377  Sum_probs=76.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--------------------CCCCCcHHHHH----HHHHH-
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--------------------KGKSGTKVQCL----TSASS-   73 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--------------------~~~~~~~~~~~----~~~~~-   73 (761)
                      +|.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.                    ++.........    ..+.. 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~   79 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT   79 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence            367899999999999999999999998  6778877652                    11111111111    11111 


Q ss_pred             --HHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           74 --ALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        74 --~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                        .+..+..||+|+++....++..|... ......-.+|+|++|.+++.+|+.+|..
T Consensus        80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  136 (196)
T 1tev_A           80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK  136 (196)
T ss_dssp             HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence              22357889999999999888878766 4332233689999999999999999964

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.26  E-value=2.2e-11  Score=126.63  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC---------CCc----H-----HHH-HHHHHHHHHC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK---------SGT----K-----VQC-LTSASSALKK   77 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~---------~~~----~-----~~~-~~~~~~~L~~   77 (761)
                      ..+|.+|+|+|+|||||||+|+.|++.++..+.+++.|.++...         .+.    .     ... ...+...+..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL  108 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc
Confidence            44678999999999999999999999987667789999985421         110    1     111 2344455677


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      |.+||||+++....++..+.++ +..++.+.++++++|.++|.+|+.+|...
T Consensus       109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~  160 (253)
T 2p5t_B          109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE  160 (253)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence            8899999999888888888888 77888899999999999999999998653

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.25  E-value=3e-13  Score=137.57  Aligned_cols=114  Identities=10%  Similarity=-0.003  Sum_probs=88.4

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccc--cccCCCC
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE--EVKGTEN  261 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  261 (761)
                      .|+.+. +.+..+++.|++.+++.-   .+..+  |.+.       .|.+++++|.+++|+|.|-|..+..  ....+..
T Consensus        65 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~  134 (214)
T 3q6z_A           65 YGGLAA-ALSKAAGPELQADCDQIVKREGRLLP--GNAT-------ISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRR  134 (214)
T ss_dssp             CSHHHH-HHHHHHCTHHHHHHHHHHHHHCCCCT--TCEE-------EEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHH
T ss_pred             CchHHH-HHHHhhhHHHHHHHHHHHHHcCCCCC--CeEE-------EEcCCCCCCCEEEEecCCcccCCCcchHHHHHHH
Confidence            455665 778888899999988752   12222  3333       5788999999999999998875331  2234556


Q ss_pred             ccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhc
Q 004319          262 PEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (761)
Q Consensus       262 ~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~  311 (761)
                      ..+.|+. .....+++|||||+||||+||||+++||++++++|++|++..
T Consensus       135 ~y~~~L~-~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~  183 (214)
T 3q6z_A          135 AVQLSLC-LAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK  183 (214)
T ss_dssp             HHHHHHH-HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHH-HHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            6667776 556679999999999999999999999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.21  E-value=5.5e-11  Score=122.97  Aligned_cols=109  Identities=23%  Similarity=0.303  Sum_probs=82.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK   77 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~   77 (761)
                      ...|.+|+|+|+|||||||+|+.|++.++  +.+++.|++.                   ++...+.......+..++..
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g--~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~  103 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC--YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKT  103 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Confidence            45788999999999999999999999998  7788876542                   12233333344455556654


Q ss_pred             ---CCcEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhccc
Q 004319           78 ---GKSVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 ---g~~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                         +..||+|+......+...+..+ ...+.. -.+|+|++|.+++.+|+.+|..
T Consensus       104 ~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~  158 (243)
T 3tlx_A          104 PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLI  158 (243)
T ss_dssp             GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence               6789999988888888877665 333332 3588999999999999999974

>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}

Probab=99.21  E-value=3.9e-11  Score=113.59  Aligned_cols=84  Identities=12%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHH-HHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQ-ILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~-lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS  654 (761)
                      +.+|++++.+.++.+.+|..+ |+|||||.+|+.++.||++++.. ++..+..+++.+ ++....++   +|+| .++++
T Consensus        15 ~~~v~~~~~~~v~l~~~~~~p-~~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l-~~~~~~~~---~N~~-~aGq~   88 (135)
T 3nrd_A           15 GIPIGTLGLCQMRLMNDRRWP-WLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGL-KKATGAEK---INIG-ALGNI   88 (135)
T ss_dssp             EEEEEECSSEEEEEESCTTSC-EEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHH-HHHHTCSE---EEEE-ECCSS
T ss_pred             CEEEEECCcEEEEEcCCCCCC-EEEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHH-HHhcCCCe---EEEe-eccCC
Confidence            458999999999999999999 56888885699999999999875 444444444444 44444443   7888 78999


Q ss_pred             ccceeeeeecC
Q 004319          655 MRQLHLHVISQ  665 (761)
Q Consensus       655 v~HLHlHVIs~  665 (761)
                      |+|||+|||.+
T Consensus        89 V~HlH~HviPR   99 (135)
T 3nrd_A           89 VRQLHVHVIAR   99 (135)
T ss_dssp             CCSCCEEEEEE
T ss_pred             CCEEEEEEecC
Confidence            99999999997

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.21  E-value=9.6e-11  Score=115.49  Aligned_cols=105  Identities=25%  Similarity=0.404  Sum_probs=77.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHH----HHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA   74 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~----~~~~~~   74 (761)
                      .++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   ++.........    ..+...
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   84 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAK   84 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhc
Confidence            4567999999999999999999999998  6778876642                   12222222222    333444


Q ss_pred             HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +..|..||+|+++....++..|... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~---~vi~l~~~~e~~~~R~~~R~~  135 (196)
T 2c95_A           85 VNTSKGFLIDGYPREVQQGEEFERRIGQPT---LLLYVDAGPETMTQRLLKRGE  135 (196)
T ss_dssp             TTTCSCEEEESCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHT
T ss_pred             cccCCcEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHccCC
Confidence            5578899999988887777766555 4333   489999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.20  E-value=6.1e-11  Score=118.22  Aligned_cols=109  Identities=16%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHH-
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSAL-   75 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L-   75 (761)
                      ....+.+|+|+|+|||||||+|+.|++.++  +.+++.|.+ ++                  +...........+.+++ 
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~   93 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLN   93 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Confidence            445678999999999999999999999998  556877654 21                  12222222223333333 


Q ss_pred             --HCCCcEEEeCCCCCHHHHHHHHHh-CCCCce-EEEEEEeCCHHHHHHHHHhcc
Q 004319           76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVD-VHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 --~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~-v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                        ..+..||+|+++....++..+..+ ...+.. -.+|+|++|.+++.+|+.+|.
T Consensus        94 ~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  148 (201)
T 2cdn_A           94 NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG  148 (201)
T ss_dssp             SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred             cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence              246789999988888887776665 433332 368999999999999999985

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.20  E-value=1.3e-12  Score=129.75  Aligned_cols=118  Identities=9%  Similarity=0.106  Sum_probs=90.3

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS  266 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (761)
                      .|+-+. +.+.++++.|++.+++... .  ..|...       .|.+++++|.+++|.|.|.|         +..-.+.|
T Consensus        50 ggGV~~-aI~~aaG~~l~~ec~~~~~-~--~~G~a~-------iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~  109 (183)
T 4abl_A           50 KAGVSK-AILECAGQNVERECSQQAQ-Q--RKNDYI-------ITGGGFLRCKNIIHVIGGND---------VKSSVSSV  109 (183)
T ss_dssp             CSTHHH-HHHHHHCHHHHHHHHHHHH-H--SCCSEE-------EEECTTSBSSEEEEEETTSC---------HHHHHHHH
T ss_pred             CccHHH-HHHHHhhHHHHHHHHHhcC-C--CCCceE-------EecCCCCCCCEEEEeCcHHH---------HHHHHHHH
Confidence            355554 6788899999999998642 1  123333       67899999999999987754         44555666


Q ss_pred             cccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-----CeEEEEecccccc
Q 004319          267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-----NARLVLVDLTQGS  325 (761)
Q Consensus       267 ~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-----~i~~v~vD~~~~s  325 (761)
                      +. .....+++|||||+||||+||||+++||++++++|++|+++++     .++||+++..++.
T Consensus       110 L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~~~~~  172 (183)
T 4abl_A          110 LQ-ECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLD  172 (183)
T ss_dssp             HH-HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCHHHHH
T ss_pred             HH-HHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHHH
Confidence            66 5566799999999999999999999999999999999999864     2566666554433

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.18  E-value=5.1e-12  Score=125.85  Aligned_cols=126  Identities=13%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCccccccccccccccccccccccc-ccccCCCCcc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAG-EEVKGTENPE  263 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  263 (761)
                      |+.+. +.+..+++.+++.+++.-   .+..+  |.+.       .|.+++++|.+++|.|.|-|..+. ...+.+..-.
T Consensus        32 gGv~~-aI~~aaG~~l~~e~~~~~~~~g~~~~--G~a~-------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y  101 (184)
T 1spv_A           32 GGVDG-AIHRAAGPALLDACLKVRQQQGDCPT--GHAV-------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAY  101 (184)
T ss_dssp             SHHHH-HHHHHHCHHHHHHHHHHHHHHCSCCT--TCEE-------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHH
T ss_pred             chHHH-HHHHHhCHHHHHHHHHHHHhcCCCCC--CCEE-------EeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHH
Confidence            44443 567777888888888762   12222  3332       577899999999999998776432 1222234444


Q ss_pred             ccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEeccccc
Q 004319          264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLTQG  324 (761)
Q Consensus       264 ~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~~~  324 (761)
                      +.|+. .....+++|||||+||||+||||+++||++++++|++|++..+.   +.|+.+|..++
T Consensus       102 ~~~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~~v~~~~~~~  164 (184)
T 1spv_A          102 LNSLR-LVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENA  164 (184)
T ss_dssp             HHHHH-HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHHHH
T ss_pred             HHHHH-HHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence            55554 44557999999999999999999999999999999999998654   55555554443

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=99.18  E-value=4.9e-11  Score=130.20  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=71.0

Q ss_pred             EEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCC-----
Q 004319          578 LLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSA-----  652 (761)
Q Consensus       578 vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~-----  652 (761)
                      +|||||.++||.|.+|.+++|+||||| +|+.++.+|++++...|..++..+.+.+.+.+..+   .+++|+|.+     
T Consensus       227 iV~E~e~~~af~~~~p~~P~h~lViPk-~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~---~yn~~~n~gp~~g~  302 (351)
T 1z84_A          227 VIDESSHFVSVAPFAATYPFEIWIIPK-DHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDP---PYNYMIHTSPLKVT  302 (351)
T ss_dssp             EEEECSSEEEEECTTCSSTTCEEEEES-SCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEEECCCTTCC
T ss_pred             EEecCCcEEEEeccCCCCCeEEEEEec-cccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCC---CEEEEEeCCCccCC
Confidence            899999999999999999999999999 89999999999998888888876655555544443   377777754     


Q ss_pred             ---CcccceeeeeecC
Q 004319          653 ---PSMRQLHLHVISQ  665 (761)
Q Consensus       653 ---pSv~HLHlHVIs~  665 (761)
                         ++++|||+|||++
T Consensus       303 ~~~q~v~HlHiHiiPR  318 (351)
T 1z84_A          303 ESQLPYTHWFLQIVPQ  318 (351)
T ss_dssp             GGGGGGCCCEEEEEEC
T ss_pred             CCCCccceEEEEEEcc
Confidence               4789999999994

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=99.18  E-value=5.7e-11  Score=129.63  Aligned_cols=120  Identities=13%  Similarity=0.145  Sum_probs=83.9

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCC---
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSA---  652 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~---  652 (761)
                      ..+|||||.++||.|.+|.+++|+||||| +|+.++.+|++++...|..++....+.+.+.+..+  ..+++|+|..   
T Consensus       210 ~~iV~E~e~~~af~~~~p~~pgh~lViPK-~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~--~~Yn~g~~~~p~~  286 (348)
T 1gup_A          210 SRTVVETEHWLAVVPYWAAWPFETLLLPK-AHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCS--FPYSMGWHGAPFN  286 (348)
T ss_dssp             TTEEEECSSEEEECCTTCCSTTCEEEEES-SCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSC--CCEEEEEECCCSS
T ss_pred             ceEEEeCCcEEEEEccCCCCceEEEEEeC-cccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC
Confidence            36999999999999999999999999999 89999999999998877777765555555544432  1378888765   


Q ss_pred             ---CcccceeeeeecCCccccc-ccccccccccCcccc--cCHHHHHHHHHhc
Q 004319          653 ---PSMRQLHLHVISQDFNSKH-LKNKKHWNSFNTAFF--CDSVDVLEEISNH  699 (761)
Q Consensus       653 ---pSv~HLHlHVIs~d~~s~~-lk~kkH~nsF~t~fF--v~~~~v~~~l~~~  699 (761)
                         ++++|||+|||++=+.+.. +|..-.|... +..|  ++.+++.++|++-
T Consensus       287 g~~q~v~HlHiHiiPpl~R~~~~~~~~~g~e~~-~~~~~~~~pE~~A~~Lr~~  338 (348)
T 1gup_A          287 GEENQHWQLHAHFYPPLLRSATVRKFMVGYEML-AETQRDLTAEQAAERLRAV  338 (348)
T ss_dssp             SSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHH-TCCEESSCHHHHHHHHHTS
T ss_pred             CCCCcccEEEEEEecchhccCCcccceeeEecc-cCCCCCCCHHHHHHHHHhh
Confidence               4789999999993111111 1111111100 2222  3577888888654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.17  E-value=1.5e-10  Score=132.70  Aligned_cols=131  Identities=16%  Similarity=0.240  Sum_probs=89.6

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC------------CCcH-----HHH----HHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK------------SGTK-----VQC----LTSA   71 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~------------~~~~-----~~~----~~~~   71 (761)
                      ...++.+|+|+|+|||||||+|++|++.++   ....+++.|+++...            ....     ..+    +..+
T Consensus        31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~  110 (520)
T 2axn_A           31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDV  110 (520)
T ss_dssp             --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHH
Confidence            345788999999999999999999998874   456678888774210            0111     111    1223


Q ss_pred             HHHH--HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319           72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus        72 ~~~L--~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      ...|  ..|..||+|++|....+|..++++ +..++.+.+|++.++ .+++.+|+..|........+..+++++..+.+
T Consensus       111 ~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~  189 (520)
T 2axn_A          111 KSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK  189 (520)
T ss_dssp             HHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence            3334  568899999999999999999988 777888888888888 56666677666543222233356666655533

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=115.42  Aligned_cols=105  Identities=21%  Similarity=0.392  Sum_probs=77.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHH----HHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCL----TSASSA   74 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~----~~~~~~   74 (761)
                      +++.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.                   ++.........    ..+...
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~   87 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG--FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVAS   87 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhC--CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            3567999999999999999999999998  7778876652                   12222222222    223333


Q ss_pred             HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +..+..||+|+++....++..|... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        88 ~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~---~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           88 LGDTRGFLIDGYPREVKQGEEFGRRIGDPQ---LVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             TTSCSCEEEETCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHTCC
T ss_pred             cccCccEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHcCCC
Confidence            4468899999999988887777554 3333   489999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.17  E-value=6.1e-11  Score=119.47  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|++.                   .+...........+..++..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG--IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS--CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccC
Confidence            488999999999999999999998  6678875552                   12223333344555566654   78


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .+|+|+.+....++..+... ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus        80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  128 (216)
T 3dl0_A           80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR  128 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            89999988998888877766 4444433 58999999999999999994

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.17  E-value=1.4e-10  Score=111.28  Aligned_cols=116  Identities=19%  Similarity=0.314  Sum_probs=80.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC-------Cc---H----------HHHHHHHHHHH--HCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-------GT---K----------VQCLTSASSAL--KKG   78 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~-------~~---~----------~~~~~~~~~~L--~~g   78 (761)
                      .+|+|+|+|||||||+|+.| +.++  +.+++.|++.....       ..   .          ......+...+  ..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence            47999999999999999999 8888  66777554421100       00   0          01123455566  667


Q ss_pred             CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319           79 KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      ..||+|+. ....++..+.+. .   ....+|+|++|.+++.+|+..|....   .....+++..++..
T Consensus        79 ~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~---~~~~~~~~~~r~~~  140 (179)
T 3lw7_A           79 DLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD---DSKEISELIRRDRE  140 (179)
T ss_dssp             SCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-------CCCHHHHHHHHHH
T ss_pred             CeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Confidence            88999997 888888888776 4   34679999999999999999997531   12455666666544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.17  E-value=1.6e-10  Score=112.86  Aligned_cols=126  Identities=10%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc----ccc----CCCC-----CcHHH-HHHHHHHHHHC-CCcEEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TIN----KGKS-----GTKVQ-CLTSASSALKK-GKSVFL   83 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D----~i~----~~~~-----~~~~~-~~~~~~~~L~~-g~~VII   83 (761)
                      ++.+|+|+|+|||||||+|+.|++.++..+. ++.|    .++    ++..     ..+.+ ....+...+.. |..||+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~   82 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV-FEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIV   82 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE-CCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-EchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            4679999999999999999999999885442 1321    121    1111     11212 23445555665 788999


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC
Q 004319           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP  151 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P  151 (761)
                      |.+......+..+++. +..+..+..|+|++|.+++.+|+.+|..+.      ...+.+.+++..++++
T Consensus        83 d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~  145 (183)
T 2vli_A           83 PVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ------VNVGTVEDRLNELRGE  145 (183)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----------CCHHHHHHHHHHHTSG
T ss_pred             eeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc------hhHHHHHHHHHhhccc
Confidence            9998888777777776 555665667999999999999999987432      2356677777776655

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.16  E-value=2.3e-10  Score=110.15  Aligned_cols=130  Identities=16%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC--------------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN--------------   87 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn--------------   87 (761)
                      +|+|+|+|||||||+++.|++.++  +.+++.|.+..... .....+. ....+..+..+|.|...              
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~--~~~i~~d~~~~~~~-~~~~~~~-~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~   78 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKS-GNEKLFE-HFNKLADEDNVIIDRFVYSNLVYAKKFKDYS   78 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC--CCEEECCCHHHHTT-CHHHHHH-HHHHHTTCCSEEEESCHHHHHHHTTTBTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeeecCcccccchh-HHHHHHH-HHHHHHhCCCeEEeeeecchHHHHHHHHHhh
Confidence            799999999999999999999998  66688887753322 1122222 34567788899999522              


Q ss_pred             -CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcCC
Q 004319           88 -LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQN  165 (761)
Q Consensus        88 -~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~  165 (761)
                       ....++..+... ..   ...+|+|++|.+++.+|+.+|.+.      ....+.+.++.+.++.+...+... .+++++
T Consensus        79 ~~~~~~~~~l~~~~~~---~~~~i~l~~~~e~~~~R~~~r~r~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~id~  148 (173)
T 3kb2_A           79 ILTERQLRFIEDKIKA---KAKVVYLHADPSVIKKRLRVRGDE------YIEGKDIDSILELYREVMSNAGLH-TYSWDT  148 (173)
T ss_dssp             CCCHHHHHHHHHHHTT---TEEEEEEECCHHHHHHHHHHHSCS------CCCHHHHHHHHHHHHHHHHTCSSC-EEEEET
T ss_pred             HhhHHHHHHHhccCCC---CCEEEEEeCCHHHHHHHHHhcCCc------chhhhHHHHHHHHHHHHHhhcCCC-EEEEEC
Confidence             233333333322 22   234899999999999999998532      222445555555555444333333 334444

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.15  E-value=1.2e-10  Score=114.07  Aligned_cols=104  Identities=19%  Similarity=0.293  Sum_probs=75.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKKGK   79 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~g~   79 (761)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.                   ++...........+...+..+ 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG--FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER-   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC-
Confidence            356899999999999999999999988  7778876542                   112222222334444445443 


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                       +|+|++.....++..+..+ ...+. .-.+|+|++|.+++.+|+.+|.
T Consensus        80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             9999988888777666555 44444 3368999999999999999986

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.15  E-value=9.2e-11  Score=118.02  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|++.                   .+...........+...+..   +.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~--~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE--IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCC
Confidence            488999999999999999999998  6668876552                   12222333334455555544   77


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .+|+|+.+....++..+... ...+..+ .+|+|++|.+++.+|+.+|.
T Consensus        80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  128 (216)
T 3fb4_A           80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW  128 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEE
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            89999988998888877766 4444433 58999999999999999994

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.14  E-value=2.3e-10  Score=115.79  Aligned_cols=107  Identities=17%  Similarity=0.245  Sum_probs=76.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHH---
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK---   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~---   76 (761)
                      .+.+|+|+|+|||||||+|+.|++.++  +.+++.|++..                   +...........+..++.   
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~   80 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP   80 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc
Confidence            346899999999999999999999998  67788755521                   222233333444555554   


Q ss_pred             -CCCcEEEeCCCCCHHHHHHHHHh-CCCCceE-EEEEEeCCHHHHHHHHHhccc
Q 004319           77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDV-HAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        77 -~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v-~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       .+..||+|+......++..+..+ ...+..+ .+|+|++|.+++.+|+..|..
T Consensus        81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~  134 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLI  134 (220)
T ss_dssp             GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCc
Confidence             46789999977777776665544 3333333 589999999999999999864

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.14  E-value=8e-12  Score=125.33  Aligned_cols=127  Identities=9%  Similarity=0.110  Sum_probs=90.4

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA  265 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (761)
                      .|+.+. +.+..+++.+++.+++.-.. .....|.+.       .|.+++++|.+++|.|.|-|.. ......+..-.+.
T Consensus        50 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~  120 (193)
T 2xd7_A           50 KEDIGK-ALEKAGGKEFLETVKELRKSQGPLEVAEAA-------VSQSSGLAAKFVIHCHIPQWGS-DKCEEQLEETIKN  120 (193)
T ss_dssp             CSHHHH-HHHHHHHHHHHHHHHHHHHHTCSCCTTCEE-------EEECTTSSSSEEEEEECCCTTS-TTHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHhhHHHHHHHHHHHHHcCCCCCCCeE-------EeeCCCCCCCEEEEECCCcCCC-cchHHHHHHHHHH
Confidence            355554 67788889999998875211 111123333       5788999999999999998863 1222234444555


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-----CeEEEEecccc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-----NARLVLVDLTQ  323 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-----~i~~v~vD~~~  323 (761)
                      |+. .....+++|||||+||||+||||+++||++++++|++|++.++     .+.|+.+|..+
T Consensus       121 ~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~~~~  182 (193)
T 2xd7_A          121 CLS-AAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSES  182 (193)
T ss_dssp             HHH-HHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCSSCCCCEEEEEECSHHH
T ss_pred             HHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHH
Confidence            665 4555799999999999999999999999999999999998753     24555554443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.14  E-value=7.2e-10  Score=110.33  Aligned_cols=106  Identities=17%  Similarity=0.330  Sum_probs=75.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc------C--------------CCCCcHHH----HHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN------K--------------GKSGTKVQ----CLTSAS   72 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~------~--------------~~~~~~~~----~~~~~~   72 (761)
                      ...+.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.      .              +.......    +.+.+.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g--~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC--ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            34567999999999999999999999998  6778877552      1              11111111    123444


Q ss_pred             HHHHCC-CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           73 SALKKG-KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        73 ~~L~~g-~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+..| ..+|+|+......++..+... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~---~~i~l~~~~e~~~~Rl~~R~~  143 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFERDIVESK---FILFFDCPEDIMLERLLERGK  143 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHH
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHhccc
Confidence            556677 579999988777766655444 3333   488999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.14  E-value=2.1e-10  Score=116.21  Aligned_cols=106  Identities=21%  Similarity=0.264  Sum_probs=75.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHHC---C
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALKK---G   78 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~~---g   78 (761)
                      ..|+|+|+|||||||+|+.|++.++  +.+++.|++..                   +...........+..++..   +
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG--LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC--ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            5789999999999999999999998  77888765521                   1122222233445555554   7


Q ss_pred             CcEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccc
Q 004319           79 KSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ..||+|+......+...+..+ ...+. .-.+|+|++|.+++.+|+..|..+
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  135 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH  135 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence            889999988776666655433 22222 235899999999999999998743

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.13  E-value=6.5e-12  Score=125.99  Aligned_cols=115  Identities=10%  Similarity=0.113  Sum_probs=84.7

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA  265 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (761)
                      .|+.+. +.+..+++.+++.+++.-.. .....|.+.       .|.+++++|.+++|.|.|-|.. ......+..-.+.
T Consensus        47 ggGv~~-aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~  117 (193)
T 1yd9_A           47 GGEVGS-TLEKKGGKEFVEAVLELRKKNGPLEVAGAA-------VSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKN  117 (193)
T ss_dssp             CSHHHH-HHHHHHHHHHHHHHHHHHHHHCSCCTTCEE-------EEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHH
T ss_pred             CchHHH-HHHHHhhHHHHHHHHHHHHHcCCCCCCCEE-------EecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHH
Confidence            455555 67888889999988875211 111123332       5788999999999999988853 2222234445556


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKL  311 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~  311 (761)
                      |+. .....+++|||||+||||+||||+++||++++++|++|++..
T Consensus       118 ~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~  162 (193)
T 1yd9_A          118 CLA-LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST  162 (193)
T ss_dssp             HHH-HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            665 445579999999999999999999999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.10  E-value=7.2e-10  Score=112.87  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHC--CCc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKK--GKS   80 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~--g~~   80 (761)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|++ ++                  +...........+..++..  |..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg--~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS--LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCe
Confidence            689999999999999999999998  677887655 21                  1122233334556677777  899


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhccc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ||+|+......++..+..+ ...+. .-.+|+|++|.+++.+|+.+|..
T Consensus        80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~  128 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRI  128 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCE
T ss_pred             EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccC
Confidence            9999987776666666443 22222 22589999999999999999974

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.08  E-value=1.8e-11  Score=126.21  Aligned_cols=125  Identities=9%  Similarity=0.096  Sum_probs=90.3

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccc-c-ccccCCCCcccc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAA-G-EEVKGTENPEVA  265 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  265 (761)
                      |+.+. +.+..+++.|++.+++.+. .  ..|.+.       .|.++++.|.+++|.|.|-|... . .....+..-.+.
T Consensus        91 gGV~~-AI~~aaG~~l~~ec~~~g~-~--~~G~a~-------iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~  159 (235)
T 2x47_A           91 GGVDG-CIHRAAGPLLTDECRTLQS-C--KTGKAK-------ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLS  159 (235)
T ss_dssp             SHHHH-HHHHHHCHHHHHHHHTSCC-C--CBTCEE-------EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHhCHHHHHHHHHhCC-C--CCCceE-------EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHH
Confidence            44444 6788888999999987532 1  223332       57889999999999999887531 1 222234444556


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC----eEEEEeccccc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN----ARLVLVDLTQG  324 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~----i~~v~vD~~~~  324 (761)
                      |+. .....+++|||||+||||+||||+++||++++++|++|++.++.    +.|+.++..++
T Consensus       160 ~L~-~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~  221 (235)
T 2x47_A          160 SLD-LLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDE  221 (235)
T ss_dssp             HHH-HHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHH
T ss_pred             HHH-HHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHH
Confidence            665 45557999999999999999999999999999999999987643    55555554443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.03  E-value=1.9e-09  Score=110.75  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHHC---CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALKK---GK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~~---g~   79 (761)
                      -+-|.|+|||||||+|+.|++.++  +.+|+.+++ +                  +|...+.+.....+.++|..   ..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g--~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG--IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT--CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC--CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            467999999999999999999998  777887544 2                  23344445555677777765   45


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .||+|+.+.+..+...|.+. ....   .+|+|++|.+++.+|+..|..+
T Consensus        88 g~ILDGfPRt~~Qa~~L~~~~~~~d---~VI~Ldvp~e~l~~Rl~~R~~~  134 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMKEAGVAID---YVLEIDVPFSEIIERMSGRRTH  134 (230)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCS---EEEEECCCHHHHHHHHHTEEEE
T ss_pred             CeEecCCCCcHHHHHHHHHhCCCcc---EEEEEeCCHHHHHHHHHcCCcc
Confidence            79999998988887776544 3333   4899999999999999999754

>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}

Probab=99.01  E-value=8.8e-10  Score=105.98  Aligned_cols=84  Identities=15%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCC-CCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFD-GLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPS  654 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~-hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pS  654 (761)
                      ..++++...++++.+. |.+..|+||||| + |+.++.||++++...|..+.....+.+++....++   +|+| .++++
T Consensus        18 ~~~~~e~p~~~v~l~~-~~~~~H~LVIPk-~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g---~N~~-~aGq~   91 (149)
T 3i4s_A           18 TIDIGDLPLSKVLVIK-DANYPWLLLVPR-RPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDK---LNIA-ALGNL   91 (149)
T ss_dssp             EEEEEECSSEEEEEES-CTTSCEEEEEEC-CTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSE---EEEE-ECCSS
T ss_pred             CEEEEEcCceEEEECC-CCCCCEEEEEec-ccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCe---EEEe-ecCCc
Confidence            3478888988888884 556779999999 6 89999999999876666655555555555444443   7887 78999


Q ss_pred             ccceeeeeecC
Q 004319          655 MRQLHLHVISQ  665 (761)
Q Consensus       655 v~HLHlHVIs~  665 (761)
                      |+|||+|||.+
T Consensus        92 V~HlH~HvIPR  102 (149)
T 3i4s_A           92 VPQLHVHIIAR  102 (149)
T ss_dssp             CCSCCEEEEEE
T ss_pred             CCEEEEEEECC
Confidence            99999999997

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.01  E-value=1.5e-09  Score=109.95  Aligned_cols=104  Identities=26%  Similarity=0.365  Sum_probs=71.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHH---
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK---   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~---   76 (761)
                      .+.+|+|+|+|||||||+++.|++.++  +.+++.|++.                   ++...+.......+...+.   
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~   81 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPD   81 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcc
Confidence            456899999999999999999999998  6778876541                   2223333333333333332   


Q ss_pred             -CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           77 -KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        77 -~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       .+..+|+|++.....++..+... ...+   .+|+|++|.+++.+|+..|..
T Consensus        82 ~~~~~~vidg~~~~~~~~~~l~~~~~~~~---~vi~L~~~~~~~~~R~~~r~~  131 (222)
T 1zak_A           82 AQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVGRRL  131 (222)
T ss_dssp             HHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTEEE
T ss_pred             ccCCcEEEECCCCCHHHHHHHHHcCCCCC---EEEEEECCHHHHHHHHHcCCc
Confidence             24568889977766555544322 1222   489999999999999998864

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=98.99  E-value=5e-11  Score=116.80  Aligned_cols=118  Identities=11%  Similarity=-0.001  Sum_probs=86.1

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCCC-CCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVA  265 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (761)
                      .|+-+. +.+...++.|++.+++.-... .-..|...       .|+|+ +.|.+++|.|.|-|+. ....+.+..-.+.
T Consensus        42 ggGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~-------iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~  111 (168)
T 3eti_A           42 VGGVAR-AIDVFTGGKLTKRSKEYLKSSKAIAPGNAV-------LFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKA  111 (168)
T ss_dssp             CSTTHH-HHHHHTTTHHHHHHHHHHTTSCCCCTTEEE-------EEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHH
T ss_pred             CchHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCEE-------EecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHH
Confidence            466665 788899999999999863221 11113332       57788 9999999999998854 2222334455555


Q ss_pred             ccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319          266 SVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS  325 (761)
Q Consensus       266 ~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s  325 (761)
                      |+..      .+|||||+||||+||||+++||++++++|++     ..+.|++++..++.
T Consensus       112 ~L~~------~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~  160 (168)
T 3eti_A          112 IAKC------DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQERV  160 (168)
T ss_dssp             HHTS------CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHHHHH
T ss_pred             HHHh------cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHHHHH
Confidence            5551      3799999999999999999999999999998     56888887665544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.96  E-value=2.5e-09  Score=104.39  Aligned_cols=143  Identities=24%  Similarity=0.349  Sum_probs=108.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC------CCCCc----HHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK------GKSGT----KVQCLTSASSALKKGKSVFLDRCNL   88 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~------~~~~~----~~~~~~~~~~~L~~g~~VIID~tn~   88 (761)
                      +..++.|+|++|||||||++.+...    ...++.|.++.      +....    .......+...+..|..+++|.++.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   83 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFKP----TEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV   83 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSCG----GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHccC----CeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            4579999999999999999976532    23456665521      11111    1223345566778899999999999


Q ss_pred             CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCC---CccCCceEEEEcC
Q 004319           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELP---KLSEGFSRITLCQ  164 (761)
Q Consensus        89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P---~~~EgFd~V~vv~  164 (761)
                      ....++.++.+ +.......+++||-|...+-.|+.+|..+      .++++++.++...+...   ...+|+..|++.+
T Consensus        84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~------~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH  157 (171)
T 4gp7_A           84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR------QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILN  157 (171)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC------CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC------CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeC
Confidence            99888888888 88888999999999999999999999864      67899998887764321   2367999999999


Q ss_pred             ChhhHHH
Q 004319          165 NENDVQA  171 (761)
Q Consensus       165 ~~~ei~~  171 (761)
                      +.++++.
T Consensus       158 ~~~~~~~  164 (171)
T 4gp7_A          158 SPEEVEE  164 (171)
T ss_dssp             SHHHHHH
T ss_pred             CHHHhhh
Confidence            8877764

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=98.95  E-value=5.6e-11  Score=115.57  Aligned_cols=117  Identities=11%  Similarity=0.033  Sum_probs=83.8

Q ss_pred             CCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGSS  273 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (761)
                      ..+.++++.+++.+++.+. .  ..|...       .|.+++++|.+++|.+.|-|..  .+...++.-.+.|+. ....
T Consensus        36 aI~~~~G~~l~~~c~~~g~-~--~~G~a~-------it~~~~L~~~~Vih~vgp~~~~--~~~~~L~~~~~~~L~-~a~~  102 (159)
T 2dx6_A           36 AILRKGGPSIQEECDRIGK-I--RVGEAA-------VTGAGNLPVRYVIHAAVLGDEP--ASLETVRKATKSALE-KAVE  102 (159)
T ss_dssp             HHHHHHCTHHHHHHHHHCC-C--CTTCEE-------EEECTTSSSSEEEEEEEESSSC--CCHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHhCHHHHHHHHhcCC-C--CCCcEE-------EecCCCCCCCEEEEEeCCCCCC--chHHHHHHHHHHHHH-HHHH
Confidence            5677777889999987542 1  223332       5778899999999999997752  222223333444444 4445


Q ss_pred             CCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 004319          274 SDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQG  324 (761)
Q Consensus       274 ~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~  324 (761)
                      .+++|||||+||||+||||++++++++++++++| ....++.|+.+|.+++
T Consensus       103 ~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~~~~~  152 (159)
T 2dx6_A          103 LGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYREEDA  152 (159)
T ss_dssp             TTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESSHHHH
T ss_pred             cCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECCHHHH
Confidence            6899999999999999999999999999999999 3333466666655443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.95  E-value=3.2e-09  Score=108.58  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC--
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK--   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~--   77 (761)
                      .+..|+|+|+|||||||+|+.|++.++  +.+++.|++.                   .+...........+..++..  
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            456899999999999999999999998  6778876541                   12222233333445555543  


Q ss_pred             -CCcEEEeCCCCCHHHHHHHHHh-CCCC-ceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           78 -GKSVFLDRCNLEREQRTDFVKL-GGPE-VDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        78 -g~~VIID~tn~~~~~R~~~~~l-~~~~-~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                       +..||+|+......++..+.++ ...+ ..-.+|+|++|.+++.+|+..|..+
T Consensus        93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~  146 (233)
T 1ak2_A           93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  146 (233)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence             4679999977777666655443 2211 1235899999999999999999643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.94  E-value=4.6e-09  Score=106.77  Aligned_cols=104  Identities=20%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC--
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK--   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~--   77 (761)
                      ++.+|+|+|+|||||||+|+.|++.++  +.+++.|++.                   ++...........+.+++..  
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~--~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~   83 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE--LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT   83 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS--SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC--CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence            457899999999999999999999998  6778875541                   12222333333444455653  


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +..||+|+......+...+..+...+   .+|+|++|.+++.+|+..|..
T Consensus        84 ~~~~vid~~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~~~R~~~R~~  130 (227)
T 1zd8_A           84 QYSWLLDGFPRTLPQAEALDRAYQID---TVINLNVPFEVIKQRLTARWI  130 (227)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTSCCC---EEEEEECCHHHHHHHHTCEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHHHhcCCC---EEEEEECCHHHHHHHHHcCcC
Confidence            67899999877766554443332233   489999999999999998853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.93  E-value=7.3e-09  Score=104.33  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHHCC---C
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALKKG---K   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~~g---~   79 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|++ ++                  +...+.......+..++...   .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   79 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN   79 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            489999999999999999999998  566887554 21                  11222333345555666553   5


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .||+|+......+...+... ...+   .+|+|++|.+++.+|+.+|..
T Consensus        80 ~~i~dg~~~~~~~~~~l~~~~~~~d---~vi~l~~~~e~~~~R~~~R~~  125 (214)
T 1e4v_A           80 GFLLDGFPRTIPQADAMKEAGINVD---YVLEFDVPDELIVDRIVGRRV  125 (214)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCS---EEEEEECCHHHHHHHHHTEEE
T ss_pred             CEEEeCCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHCCcc
Confidence            79999977766665555333 2222   489999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.91  E-value=7.4e-09  Score=101.76  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC----cH---HHHH----HHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK---VQCL----TSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~----~~---~~~~----~~~~~~L~~g~~VIID   84 (761)
                      ++.+|+|+|+|||||||+++.|+..++   ..+.+++.|.++.....    ..   ....    ..+...+..|..||+|
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~d   91 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVICS   91 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            568999999999999999999988764   34567888877543211    11   1111    1222334677778889


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      +++.....|..+..+ ...+....+|||++|.+++.+|+..
T Consensus        92 ~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           92 FVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             CccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            988888888888777 5556678899999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.91  E-value=2.2e-09  Score=107.53  Aligned_cols=135  Identities=14%  Similarity=0.149  Sum_probs=78.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCC---------------------CeEEEeccccc----CCCCCcHH-------
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---------------------PWARICQDTIN----KGKSGTKV-------   65 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---------------------~~~~I~~D~i~----~~~~~~~~-------   65 (761)
                      ..+.+|+|+|+|||||||+++.|++.++.                     .+..++.|.+.    ++.+....       
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            45678999999999999999999988742                     23333333331    11111000       


Q ss_pred             -HHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCC-ceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           66 -QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPE-VDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        66 -~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~-~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                       .....+...+..|+.||+|...   .....+.+.  .. ....+|||+ +|.+++.+|+.+|..       ..++.+..
T Consensus        90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~~~--~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-------~~~~~i~~  157 (204)
T 2qor_A           90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLKES--KHIQDGIYIFVKPPSIDILLGRLKNRNT-------EKPEEINK  157 (204)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCH---HHHHHHHHC--SSCSCCEEEEEECSCHHHHHHHHHTCTT-------SCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCeEEEEECH---HHHHHHHHh--cCCCCeEEEEEcCCCHHHHHHHHHHcCC-------CCHHHHHH
Confidence             0013456677899999999722   122222222  21 134688998 899999999998864       23344444


Q ss_pred             HHHhhhcCCC--ccCCceEEEEcC
Q 004319          143 RMLQKKELPK--LSEGFSRITLCQ  164 (761)
Q Consensus       143 r~~~~~e~P~--~~EgFd~V~vv~  164 (761)
                      ++.....+-.  ..+.|+.+++.+
T Consensus       158 rl~~~~~~~~~~~~~~~d~vi~n~  181 (204)
T 2qor_A          158 RMQELTREMDEADKVGFNYFIVND  181 (204)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHHHHhhhccCcEEEECc
Confidence            4444322111  345567665443

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=98.89  E-value=2.2e-10  Score=116.45  Aligned_cols=124  Identities=14%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             CCCCCCCCcchhh----HHHHHHHHh----hCCCCCCCCCCcccCCCCCCCcccccccc---ccccccccc----ccccc
Q 004319          188 GSFGQKNPDAKIQ----LGIMKFLKK----VDAPSNTGSTASSTQDPVPPQITEEKNSC---LEGQEITSL----LSDAA  252 (761)
Q Consensus       188 Gc~~~~~~~~~~~----~~i~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~  252 (761)
                      |+.+. +.+..++    +.+++.+++    .+... ...|.+.       .|.+++++|   .+++|.|.|    -|+. 
T Consensus        50 gGV~~-aI~~aaG~~~~~~l~~ec~~~~~~~g~~~-~~~G~a~-------iT~~~~L~~~g~k~VIH~vgP~~~~~~~~-  119 (211)
T 1vhu_A           50 GGVAY-AIAKACAGDAGLYTEISKKAMREQFGRDY-IDHGEVV-------VTPAMNLEERGIKYVFHTVGPICSGMWSE-  119 (211)
T ss_dssp             SHHHH-HHHHHHHSSHHHHHHHHHHHHHHHHSSSC-CCTTCCE-------EEECGGGGGGTCCEEEEEECCCCTTCCCH-
T ss_pred             cHHHH-HHHHHhCCCchHHHHHHHHHHHHHcCCCc-ccCCcEE-------EEECCCCCccCcCEEEEecCCccccccCc-
Confidence            44444 5667777    888888877    33210 1113332       578899999   999999999    6642 


Q ss_pred             cccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC--CeEEEEeccccc
Q 004319          253 GEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG--NARLVLVDLTQG  324 (761)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~--~i~~v~vD~~~~  324 (761)
                       .....+..-.+.|+. .....+++|||||+||||+||||+++||++++++|++|++ .+  .+.|+.+|..++
T Consensus       120 -~~~~~L~~~y~~~L~-~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~-~~l~~V~~v~~~~~~~  190 (211)
T 1vhu_A          120 -ELKEKLYKAFLGPLE-KAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKG-SAVKEVALVIYDRKSA  190 (211)
T ss_dssp             -HHHHHHHHHHHHHHH-HHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCC-SSCCEEEEEESSHHHH
T ss_pred             -chHHHHHHHHHHHHH-HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEEECCHHHH
Confidence             222334444555555 4445689999999999999999999999999999999994 33  345555554443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=6.4e-09  Score=103.65  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----c---------HHHHHHHHHHHHHCCCcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T---------KVQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----~---------~~~~~~~~~~~L~~g~~VIID~   85 (761)
                      +..+|+|+|+|||||||+++.|++.++  +.+++.|.+.....+    .         .......+...+..+..+||+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~--~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~  101 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN--VPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVIST  101 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEEC
Confidence            345899999999999999999999998  556888776321100    0         0111133344455677888884


Q ss_pred             C---CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH-hcccccCCCCCCChH---HHHHHHHhhhcCCCccCCce
Q 004319           86 C---NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV-KRIEHEGNLQGGKAA---AVVNRMLQKKELPKLSEGFS  158 (761)
Q Consensus        86 t---n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~-~R~~~~~~~~~~v~~---~vI~r~~~~~e~P~~~EgFd  158 (761)
                      .   ......+..+..   .   ..+|||++|.+++.+|+. .|..++. .....++   +.+.+++.... |.+.+ .+
T Consensus       102 ggg~~~~~~~~~~l~~---~---~~vi~L~~~~e~l~~Rl~~~~~~Rp~-~~~~~~~~~~~~i~~~~~~r~-~~y~~-ad  172 (199)
T 3vaa_A          102 GGGAPCFYDNMEFMNR---T---GKTVFLNVHPDVLFRRLRIAKQQRPI-LQGKEDDELMDFIIQALEKRA-PFYTQ-AQ  172 (199)
T ss_dssp             CTTGGGSTTHHHHHHH---H---SEEEEEECCHHHHHHHHHHTGGGCGG-GTTCCHHHHHHHHHHHHHHHH-HHHTT-SS
T ss_pred             CCcEEccHHHHHHHHc---C---CEEEEEECCHHHHHHHHhcCCCCCCC-cCCCChhhHHHHHHHHHHHHH-HHHhh-CC
Confidence            3   333333333322   2   248999999999999998 5544321 2234443   33444444333 22223 45


Q ss_pred             EEEEcC
Q 004319          159 RITLCQ  164 (761)
Q Consensus       159 ~V~vv~  164 (761)
                      .++..+
T Consensus       173 ~~Idt~  178 (199)
T 3vaa_A          173 YIFNAD  178 (199)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            554444

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=98.88  E-value=4.5e-10  Score=110.57  Aligned_cols=116  Identities=11%  Similarity=0.042  Sum_probs=83.0

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVAS  266 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (761)
                      -|+-+. +.+...++.|++.+++.-...    |...     .-.|+|+++.|.+++|.|.|-|+.. ...+.+..-.+.|
T Consensus        50 ggGV~~-AI~~aaG~~l~~ec~~~~~~~----g~~~-----a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~  118 (176)
T 3ejf_A           50 GSGVAK-AIADFCGLDFVEYCEDYVKKH----GPQQ-----RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNV  118 (176)
T ss_dssp             CSHHHH-HHHHHHCHHHHHHHHHHHHHH----CCCS-----EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTT
T ss_pred             CchHHH-HHHHHhhHHHHHHHHHHHHhc----CCCC-----eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHH
Confidence            355555 788999999999998862111    0000     1146788888899999999988541 1222233344444


Q ss_pred             cccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Q 004319          267 VNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQ  323 (761)
Q Consensus       267 ~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~  323 (761)
                      +.     .+++|||||+||||+||||+++||++++++|++     ..+++++++.+.
T Consensus       119 L~-----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D~  165 (176)
T 3ejf_A          119 LV-----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLSQ  165 (176)
T ss_dssp             CC-----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESCH
T ss_pred             HH-----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCCH
Confidence            44     799999999999999999999999999999983     347888766554

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.88  E-value=4.6e-09  Score=109.31  Aligned_cols=128  Identities=12%  Similarity=0.173  Sum_probs=84.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc--CCC----------------------------CCcHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN--KGK----------------------------SGTKVQCLTS   70 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~--~~~----------------------------~~~~~~~~~~   70 (761)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+.  .+.                            ........+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~--~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~   79 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG--WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR   79 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC--CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC--CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence            4799999999999999999999998  5567777642  111                            0111222222


Q ss_pred             HH---HHHHCCCcEEEeCCCCCHHHHHHHHHhCC----CCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           71 AS---SALKKGKSVFLDRCNLEREQRTDFVKLGG----PEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        71 ~~---~~L~~g~~VIID~tn~~~~~R~~~~~l~~----~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                      +.   +.+..|+.+|+++...  ...+.++  ..    .++.+.++||++|. +++.+|+.+|....-. ...++..++.
T Consensus        80 ~~~~i~~~~~g~~vIl~gg~~--~~~~~~~--~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~-~~~~~~~~l~  154 (253)
T 2ze6_A           80 LIFEVDWRKSEEGLILEGGSI--SLLNCMA--KSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFA-IREDRPSLLE  154 (253)
T ss_dssp             HHHHHHTTTTSSEEEEEECCH--HHHHHHH--HCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCSSSCCHHH
T ss_pred             HHHHHHHHhCCCCeEEeccHH--HHHHHHH--hcccccccCceEEEEecchhHHHHHHHHHHHHHHHHh-cCcccchHHH
Confidence            22   3346788888886432  1222222  33    56778899999997 9999999999764100 1134557788


Q ss_pred             HHHhhhcCCCccC
Q 004319          143 RMLQKKELPKLSE  155 (761)
Q Consensus       143 r~~~~~e~P~~~E  155 (761)
                      .+...++.|...+
T Consensus       155 e~~~~~~~p~~~~  167 (253)
T 2ze6_A          155 ELAELWNYPAARP  167 (253)
T ss_dssp             HHHHHHTSTTHHH
T ss_pred             HHHHhcCCcchHH
Confidence            8888888887553

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.86  E-value=1.2e-08  Score=118.94  Aligned_cols=106  Identities=20%  Similarity=0.280  Sum_probs=81.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCC----c---HHHH----HHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSG----T---KVQC----LTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~----~---~~~~----~~~~~~~L~~g~~VIID   84 (761)
                      ++.+|+|+|+|||||||+|+.|++.+   +..+..++.|.++.+...    +   +.+.    .+.+...+..|..||.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d  130 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS  130 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            67899999999999999999999988   777777888888653321    1   1121    22334456788888888


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHh
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVK  124 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~  124 (761)
                      ........|..+.++ ...+..+.+|||++|.++|.+|+.+
T Consensus       131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            666666778888888 7777788999999999999999764

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=98.86  E-value=5.3e-10  Score=110.91  Aligned_cols=116  Identities=13%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV  264 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (761)
                      |+-+. +.+..+++.|++.+++.-   .+..+  |.+.       .|.++++ +++++|.|.|-|..+ +    .++..+
T Consensus        53 gGV~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~L-~~~VIH~vgP~~~~~-~----~~~~L~  116 (182)
T 2acf_A           53 GGVAG-ALNKATNGAMQKESDDYIKLNGPLTV--GGSC-------LLSGHNL-AKKCLHVVGPNLNAG-E----DIQLLK  116 (182)
T ss_dssp             SHHHH-HHHHHTTTHHHHHHHHHHHHHCCCCT--TCEE-------EEECTTT-CSEEEEECCCCGGGT-C----CTTHHH
T ss_pred             chHHH-HHHHHhCHHHHHHHHHHHHHcCCCCC--CcEE-------EeeCCCC-CceEEEECCCCCCCC-c----hHHHHH
Confidence            44444 677778888988887641   22222  3332       5677787 679999999887642 1    355666


Q ss_pred             cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccchhh
Q 004319          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGSKIL  328 (761)
Q Consensus       265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s~~l  328 (761)
                      .|...   +.+++|||||+||||+||||+++|++++++++++      .+.|+++|.+.+...+
T Consensus       117 ~~y~~---~~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~d~~~y~~~l  171 (182)
T 2acf_A          117 AAYEN---FNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKALYEQVV  171 (182)
T ss_dssp             HHHHG---GGGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHHHHHHH
T ss_pred             HHHHH---hcCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEECCHHHHHHHH
Confidence            66653   2689999999999999999999999999999986      5777777665444433

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.83  E-value=1.4e-08  Score=99.50  Aligned_cols=141  Identities=15%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc-------------CCCCCcHHH-----------HHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN-------------KGKSGTKVQ-----------CLTSASSA   74 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~-------------~~~~~~~~~-----------~~~~~~~~   74 (761)
                      +|+|+|+|||||||+++.|++.+   +  +.+++.|...             ++.......           +...+...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999987   6  4455554321             222211100           01233455


Q ss_pred             HHCCCcEEEeCC------------CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHH
Q 004319           75 LKKGKSVFLDRC------------NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVV  141 (761)
Q Consensus        75 L~~g~~VIID~t------------n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI  141 (761)
                      +..|..+|+|..            .........+..+ ......-.+|+|++|.+++.+|+.+|...      + .++..
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~------~-~~~~~  152 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF------E-NKEFL  152 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCC------C-CHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCcc------c-hHHHH
Confidence            678889999952            2222232222222 21112235899999999999999865331      2 45555


Q ss_pred             HHHHhhhcCCCccCCceEEEEcCChhhHHHHH
Q 004319          142 NRMLQKKELPKLSEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       142 ~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l  173 (761)
                      .++...++.+....  +.++++++..+++++.
T Consensus       153 ~~~~~~~~~~~~~~--~~~~~Id~~~~~~~~~  182 (195)
T 2pbr_A          153 EKVRKGFLELAKEE--ENVVVIDASGEEEEVF  182 (195)
T ss_dssp             HHHHHHHHHHHHHS--TTEEEEETTSCHHHHH
T ss_pred             HHHHHHHHHHHhhC--CCEEEEECCCCHHHHH
Confidence            55544444332111  2344555544444443

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=98.83  E-value=7.8e-10  Score=116.70  Aligned_cols=116  Identities=8%  Similarity=0.036  Sum_probs=80.2

Q ss_pred             CCCCCCCCCcchhh-HHHHHHHHhhCCCCCCCCCCcccCCCCCCCcccc----------cccccccccccccccccccc-
Q 004319          187 HGSFGQKNPDAKIQ-LGIMKFLKKVDAPSNTGSTASSTQDPVPPQITEE----------KNSCLEGQEITSLLSDAAGE-  254 (761)
Q Consensus       187 hGc~~~~~~~~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-  254 (761)
                      .|+++. +.+.+++ ..+++.+++.-....-..|...       .|.++          ++.|.+++|.|.+-|..... 
T Consensus        86 gGGVd~-AI~raaGg~~l~~ec~~~~~~g~~~~G~a~-------iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~  157 (284)
T 1njr_A           86 GGGFDK-ALYNYFGGKPFETWFRNQLGGRYHTVGSAT-------VVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIF  157 (284)
T ss_dssp             CSSHHH-HHHHHHTSHHHHHHHHHHTTTSCCCTTCCE-------EEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSC
T ss_pred             CchHHH-HHHHhhCcHHHHHHHHHHHhcCCCCCCeEE-------EEECCcccccccchhcCCCCEEEEeCCCccCCCCCc
Confidence            577776 6666654 6678888775322111112221       34455          99999999999987753210 


Q ss_pred             --------cccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004319          255 --------EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (761)
Q Consensus       255 --------~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~  312 (761)
                              ....+.+-++.|+. .+ ..+++|||||+||||+||||+++||++++++|++|++..+
T Consensus       158 d~~~p~~~~~~~L~~~~~~~L~-~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~  221 (284)
T 1njr_A          158 NPQNPLKTGFEPVFNAMWNALM-HS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDH  221 (284)
T ss_dssp             CTTCHHHHTHHHHHHHHHHHHH-TS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             ccccccccHHHHHHHHHHHHHH-HH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence                    01112333445555 44 6899999999999999999999999999999999998765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.81  E-value=2.2e-08  Score=103.68  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCC--------eEEEecccccCCCCC-------------------cHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARP--------WARICQDTINKGKSG-------------------TKVQCL   68 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~--------~~~I~~D~i~~~~~~-------------------~~~~~~   68 (761)
                      ...++.+|.|+|+|||||||+|+.|++.++..        ..+++.|.+......                   +.....
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~   97 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL   97 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH
Confidence            44567899999999999999999999988833        347898888642110                   011112


Q ss_pred             HHHHHHHH------------------------CCCcEEEeCCCCC-HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH
Q 004319           69 TSASSALK------------------------KGKSVFLDRCNLE-REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV  123 (761)
Q Consensus        69 ~~~~~~L~------------------------~g~~VIID~tn~~-~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~  123 (761)
                      +.+.....                        ....||+|+..+. ...   +.+.  .+   .+|||++|.+++.+|+.
T Consensus        98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~---~~~~--~d---~vi~l~~~~e~~~~R~~  169 (252)
T 1uj2_A           98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQE---VRDL--FQ---MKLFVDTDADTRLSRRV  169 (252)
T ss_dssp             HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHH---HHHH--CS---EEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHH---HHHh--cC---eeEEEeCCHHHHHHHHH
Confidence            22222221                        2356899996653 222   2222  22   28999999999999999


Q ss_pred             hcc
Q 004319          124 KRI  126 (761)
Q Consensus       124 ~R~  126 (761)
                      +|.
T Consensus       170 ~R~  172 (252)
T 1uj2_A          170 LRD  172 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.80  E-value=4e-08  Score=97.89  Aligned_cols=105  Identities=21%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC----Cc---HHH----HHHHHHHHHHCCCcE
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS----GT---KVQ----CLTSASSALKKGKSV   81 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~----~~---~~~----~~~~~~~~L~~g~~V   81 (761)
                      ...++.+|+|+|++||||||+++.|+..+   +....+++.|.++....    ..   ...    ....+......+..+
T Consensus        21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  100 (200)
T 3uie_A           21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIIC  100 (200)
T ss_dssp             HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceE
Confidence            34567899999999999999999999887   53334788888753211    11   111    113334445678889


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |++..+.....|..+..+ .  +..+..|||++|.+++.+|+
T Consensus       101 i~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A          101 IASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             EEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred             EEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence            999989988999888777 4  34567899999999999997

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.80  E-value=2.5e-08  Score=100.22  Aligned_cols=106  Identities=17%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCCC----Cc---HHH----HHHHHHHHHHCCCcE
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS----GT---KVQ----CLTSASSALKKGKSV   81 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~~----~~---~~~----~~~~~~~~L~~g~~V   81 (761)
                      ..++.+|+|+|+|||||||+++.|++.++    ..+.+++.|.++....    ..   +..    +...+...+..|..|
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V  101 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA  101 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence            34568999999999999999999988654    4577888888764321    11   111    122344667889999


Q ss_pred             EEeCCCCCHHHHHHHHHh-C------CCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-G------GPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~------~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |+|........|..+..+ .      ..+.+..+|+|++|.+++.+|+
T Consensus       102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A          102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            999665555677777666 4      3346678999999999999994

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.79  E-value=1.3e-08  Score=99.65  Aligned_cols=119  Identities=19%  Similarity=0.213  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH------------HHH-HHHHHHHHHCCCcEEEeCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK------------VQC-LTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~------------~~~-~~~~~~~L~~g~~VIID~t   86 (761)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ ..            ... ...+...+.....||.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~   80 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG--VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG   80 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC--CCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence            4699999999999999999999998  667898887421111 00            011 1223333344444444442


Q ss_pred             --CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        87 --n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                        .+....|..+   + .+   .+|+|++|.+++.+|+.+|..++. .......+.+..++....
T Consensus        81 ~~v~~~~~~~~l---~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~-~~~~~~~~~i~~~~~~r~  137 (184)
T 2iyv_A           81 GAVTSPGVRAAL---A-GH---TVVYLEISAAEGVRRTGGNTVRPL-LAGPDRAEKYRALMAKRA  137 (184)
T ss_dssp             TGGGSHHHHHHH---T-TS---CEEEEECCHHHHHHHTTCCCCCSS-TTSCCHHHHHHHHHHHHH
T ss_pred             cEEcCHHHHHHH---c-CC---eEEEEeCCHHHHHHHHhCCCCCCC-ccCCCHHHHHHHHHHHHH
Confidence              2344444433   3 33   388999999999999998864321 122335566776665433

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.78  E-value=1.4e-08  Score=99.34  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----cH---------HHHHHHHHHHHHCCCcEEEeC-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----TK---------VQCLTSASSALKKGKSVFLDR-   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----~~---------~~~~~~~~~~L~~g~~VIID~-   85 (761)
                      +.+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+    ..         ......+...+.....+||+. 
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g   82 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK--RILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATG   82 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecC
Confidence            45789999999999999999999998  667888887432111    00         011122333343334445544 


Q ss_pred             --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH--HhcccccCCCCCCChHHHHHHHHhhhc
Q 004319           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS--VKRIEHEGNLQGGKAAAVVNRMLQKKE  149 (761)
Q Consensus        86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~--~~R~~~~~~~~~~v~~~vI~r~~~~~e  149 (761)
                        ..+....|..+...      ..+|||++|.+++.+|+  ..|..++ ........+.+..++...+
T Consensus        83 g~~~~~~~~~~~l~~~------~~vi~L~~~~e~l~~Rl~~~~~~~rp-~~~~~~~~~~l~~~~~~r~  143 (185)
T 3trf_A           83 GGVVLDEKNRQQISET------GVVIYLTASIDTQLKRIGQKGEMRRP-LFIKNNSKEKLQQLNEIRK  143 (185)
T ss_dssp             TTGGGSHHHHHHHHHH------EEEEEEECCHHHHHHHHHCCTTCSSC-CCCCHHHHHHHHHHHHHHH
T ss_pred             CceecCHHHHHHHHhC------CcEEEEECCHHHHHHHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHH
Confidence              44555665544322      25899999999999999  4443321 1111112455666665544

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=98.78  E-value=2e-10  Score=112.46  Aligned_cols=86  Identities=9%  Similarity=0.021  Sum_probs=64.5

Q ss_pred             cccccccccccccccccc--ccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-Ce
Q 004319          238 CLEGQEITSLLSDAAGEE--VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NA  314 (761)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-~i  314 (761)
                      |.+++|.|.|-|..+...  ...+..-.+.|+. .....+++|||||+||||+||||+++||+ +++++.+|+++.. ++
T Consensus        70 ~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~-~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V  147 (168)
T 3gpg_A           70 TYPVIHAVGPNFSNYSESEGDRELAAAYREVAK-EVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADV  147 (168)
T ss_dssp             TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHH-HHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEE
T ss_pred             CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHH-HHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEE
Confidence            899999999988754311  2234445555665 45567999999999999999999999999 8999999988753 46


Q ss_pred             EEEEecccccc
Q 004319          315 RLVLVDLTQGS  325 (761)
Q Consensus       315 ~~v~vD~~~~s  325 (761)
                      .|+++|.+++.
T Consensus       148 ~fv~f~~~~~~  158 (168)
T 3gpg_A          148 VIYCRDKEWEK  158 (168)
T ss_dssp             EEEESCHHHHH
T ss_pred             EEEECCHHHHH
Confidence            77766665544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.78  E-value=4.3e-08  Score=110.94  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCC---C---------CCc-----HHH----HHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKG---K---------SGT-----KVQ----CLTSA   71 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~---~---------~~~-----~~~----~~~~~   71 (761)
                      ...++.+|+|+|+|||||||++++|++.++   .+...++.|.++..   .         .+.     +..    ++..+
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999998764   34555665544311   0         011     011    11222


Q ss_pred             HHHH--HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHH
Q 004319           72 SSAL--KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRM  144 (761)
Q Consensus        72 ~~~L--~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~  144 (761)
                      ...+  ..|..+|+|.+|....+|..|++. +..++.+..+.+.++ .+++.+|...|...........+++++..+
T Consensus       115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~~  191 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDF  191 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHHH
Confidence            4445  457789999999999999999988 666765555555455 566666665444322222223345554444

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.75  E-value=1.6e-08  Score=100.75  Aligned_cols=134  Identities=14%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeE----EE-----------------ecccc----cCCCCCcHHH--------HH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWA----RI-----------------CQDTI----NKGKSGTKVQ--------CL   68 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~----~I-----------------~~D~i----~~~~~~~~~~--------~~   68 (761)
                      +|+|+||+||||||++++|.+.++..+.    +.                 +.+.+    .++.+..+.+        -.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            4899999999999999999988642221    11                 11111    1111111100        11


Q ss_pred             HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHh
Q 004319           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      ..+...+..|+.+|+|.      +++....+ ...+.....||+ .++.+++.+|+.+|..       +..+++-.|+..
T Consensus        83 ~~v~~~l~~g~~vil~i------d~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~-------e~~e~i~~Rl~~  149 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSA  149 (186)
T ss_dssp             HHHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-------SCHHHHHHHHHH
T ss_pred             ceeeehhhCCCEEEecC------CHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHHHHHH
Confidence            45677888999999998      56666666 444544444555 5567999999999986       344555555544


Q ss_pred             hhcCCCc--cCCceEEEEcCChhh
Q 004319          147 KKELPKL--SEGFSRITLCQNEND  168 (761)
Q Consensus       147 ~~e~P~~--~EgFd~V~vv~~~~e  168 (761)
                      ...+-..  ...||.|++.++.++
T Consensus       150 a~~e~~~~~~~~fD~vIvNddle~  173 (186)
T 1ex7_A          150 AQAELAYAETGAHDKVIVNDDLDK  173 (186)
T ss_dssp             HHHHHHHHTTTCSSEEEECSSHHH
T ss_pred             HHHHHhhccccCCcEEEECcCHHH
Confidence            3221111  234898877665433

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=98.74  E-value=9.4e-10  Score=109.71  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=81.6

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCcc
Q 004319          187 HGSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPE  263 (761)
Q Consensus       187 hGc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (761)
                      .|+-+. +.+..+++.|++.+++.-   .+..+  |...       .|.++++   +++|.|.|-|+.  ...+.+..-.
T Consensus        70 ggGV~~-AI~~aaG~~l~~ec~~l~~~~g~~~~--G~a~-------iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y  134 (193)
T 3ejg_A           70 GGGLAK-ALDVYTKGKLQRLSKEHIGLAGKVKV--GTGV-------MVECDSL---RIFNVVGPRKGK--HERDLLIKAY  134 (193)
T ss_dssp             CSHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCT--TCEE-------EEEETTE---EEEEEECCCSST--THHHHHHHHH
T ss_pred             CchHHH-HHHHHhhHHHHHHHHHHHHHcCCCCC--CCEE-------EecCCCe---eEEEecCCCCCc--hHHHHHHHHH
Confidence            455555 688888999999998651   12222  3332       5677777   999999998853  2333345555


Q ss_pred             ccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319          264 VASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS  325 (761)
Q Consensus       264 ~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s  325 (761)
                      +.|+..      .+|||||+||||+||||+++||++++++|+++     .++|++++..++.
T Consensus       135 ~~~L~~------~~SIAfPaIstGi~G~P~~~aa~ial~~v~~~-----~V~fv~f~~~~~~  185 (193)
T 3ejg_A          135 NTINNE------QGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----EVKVFVYTDTEVC  185 (193)
T ss_dssp             HHHHHS------SSCEEECCTTCGGGCCCHHHHHHHHHHHCCSS-----CEEEEECSHHHHH
T ss_pred             HHHHHh------cCceeecccccCCCCCCHHHHHHHHHHHHhcC-----eEEEEEcCHHHHH
Confidence            556651      37999999999999999999999999999983     6888887665544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.69  E-value=1.6e-08  Score=100.94  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=63.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecc------------cccCCCCCcH---HHHH--------HHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQD------------TINKGKSGTK---VQCL--------TSA   71 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D------------~i~~~~~~~~---~~~~--------~~~   71 (761)
                      .++.+|+|+|+|||||||+++.|++.++.   ....+...            .+.++...+.   ...+        ..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI   87 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999988652   12111110            0111111111   0111        134


Q ss_pred             HHHHHCCCcEEEeCCCCCH----HHH----HHHHH-h-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           72 SSALKKGKSVFLDRCNLER----EQR----TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~----~~R----~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      ...+..|..||+|++....    ..+    ..|+. + ......-.+|+|++|.+++.+|+.+|
T Consensus        88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r  151 (212)
T 2wwf_A           88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG  151 (212)
T ss_dssp             HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred             HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence            5566778899999865421    111    23332 2 22122335899999999999998765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.68  E-value=2.2e-07  Score=91.23  Aligned_cols=106  Identities=22%  Similarity=0.225  Sum_probs=72.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC----CCCCcH----------HHHHHHHHHHHHCCCcEEEeC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~----~~~~~~----------~~~~~~~~~~L~~g~~VIID~   85 (761)
                      ..+++|+|+|||||||+++.|+...+ ...+++.|.+..    +....+          +.+...+...+..+..+|+|.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence            35899999999999999999987654 236788777642    111111          111123344456777899998


Q ss_pred             CCCCHHHHHHHHHh-C--CCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           86 CNLEREQRTDFVKL-G--GPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        86 tn~~~~~R~~~~~l-~--~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      . .....+..+.++ +  ..+..+.+++|++|.+++.+|...|..
T Consensus        81 ~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~  124 (189)
T 2bdt_A           81 I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (189)
T ss_dssp             C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence            5 455555555554 3  344467778899999999999998864

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=98.67  E-value=1.2e-09  Score=106.94  Aligned_cols=86  Identities=13%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             ccccccccccccccccc--cccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC---
Q 004319          238 CLEGQEITSLLSDAAGE--EVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG---  312 (761)
Q Consensus       238 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~---  312 (761)
                      |.+++|.|.|-|..+..  ....+..-.+.|+. .....+++|||||+||||+||||++++++++    .+|++..+   
T Consensus        64 ~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~-~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i----~~~l~~~~~~~  138 (168)
T 3gqe_A           64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAK-IVNDNNYKSVAIPLLSTGIFSGNKDRLTQSL----NHLLTALDTTD  138 (168)
T ss_dssp             TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHH-HHHHTTCSEEEEECTTSSTTSCSSCCHHHHH----HHHHHHHTTSC
T ss_pred             CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHH-HHHHcCCCEEEECCcccCCCCCCHHHHHHHH----HHHHHHCCCCC
Confidence            89999999988875331  12234445556665 4556799999999999999999999999954    44444433   


Q ss_pred             -CeEEEEecccccchhh
Q 004319          313 -NARLVLVDLTQGSKIL  328 (761)
Q Consensus       313 -~i~~v~vD~~~~s~~l  328 (761)
                       ++.|+++|.+.+..+.
T Consensus       139 ~~V~iv~fd~~~~~~~~  155 (168)
T 3gqe_A          139 ADVAIYCRDKKWEMTLK  155 (168)
T ss_dssp             CEEEEEESCHHHHHHHH
T ss_pred             CeEEEEEcCHHHHHHHH
Confidence             3677777776655444

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.66  E-value=1.6e-07  Score=91.60  Aligned_cols=107  Identities=19%  Similarity=0.302  Sum_probs=68.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCC-----C--cHHHHHHH---HHHHH-HCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKS-----G--TKVQCLTS---ASSAL-KKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~-----~--~~~~~~~~---~~~~L-~~g~~VIID   84 (761)
                      +..+|+|+|++||||||+++.|+..+   +.++..++.|.++....     .  .....+..   ....+ ..+..++.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   83 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence            45689999999999999999999876   76676678777754211     1  11122211   12223 455433334


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      .......+|..+..+ +..+....+|||++|.+++.+|+.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           84 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            443444445555555 44566678899999999999998654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.66  E-value=2.5e-08  Score=97.32  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------CC----CCcHHHHHHHHHHHHHCCCcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------GK----SGTKVQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------~~----~~~~~~~~~~~~~~L~~g~~VIID~   85 (761)
                      ++.+|+|+|+|||||||+++.|++.++  +.+++.|.+..         ..    ..........+...+..| .+|+|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~vv~~   86 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREG-GVIVDY   86 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHC-CEEEEC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC--CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcC-CEEEEe
Confidence            345789999999999999999999998  66788776521         00    112333445555666666 455676


Q ss_pred             CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+...-        .. .....+|||++|.+++.+|+.+|..
T Consensus        87 ~~~~~~--------~~-~~~~~vi~L~~~~e~l~~R~~~r~~  119 (180)
T 3iij_A           87 HGCDFF--------PE-RWFHIVFVLRTDTNVLYERLETRGY  119 (180)
T ss_dssp             SCCTTS--------CG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             chhhhc--------ch-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence            432110        10 0112489999999999999999963

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.66  E-value=2e-07  Score=92.37  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------CC---CCcH---HHHH----------------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GK---SGTK---VQCL----------------   68 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~~---~~~~---~~~~----------------   68 (761)
                      +..++.|+|++||||||+++.|+..++  ...++...+..        +.   ....   ....                
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY   83 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence            346899999999999999999998764  22333222110        00   0000   0000                


Q ss_pred             ----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           69 ----TSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        69 ----~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                          ..+.+.+..|..+|+|.      .+..+..+ ..... ...|++ .+|.+++.+|+.+|...       ..+.+..
T Consensus        84 ~~~~~~i~~~l~~g~~vi~d~------~~~~~~~~~~~~~~-~~~v~~~~~~~e~l~~Rl~~R~~~-------~~~~i~~  149 (205)
T 3tr0_A           84 GTEKDWVLRQLKAGRDVLLEI------DWQGARQIRELFPP-ALSIFILPPSIEALRERLIKRRQD-------DTAIIEQ  149 (205)
T ss_dssp             EEEHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHCTT-CEEEEEECSCHHHHHHHHHTCTTS-------CSSTHHH
T ss_pred             cchHHHHHHHHHcCCeEEEEE------CHHHHHHHHHhCCC-cEEEEEECcCHHHHHHHHHHhCCC-------CHHHHHH
Confidence                35667788999999996      22223333 22222 234444 45699999999999753       2233333


Q ss_pred             HHHhhhcCCCccCCceEEEEcCChhh
Q 004319          143 RMLQKKELPKLSEGFSRITLCQNEND  168 (761)
Q Consensus       143 r~~~~~e~P~~~EgFd~V~vv~~~~e  168 (761)
                      ++............++.|++.++.++
T Consensus       150 rl~~~~~~~~~~~~~d~vi~n~~~~~  175 (205)
T 3tr0_A          150 RLALAREEMAHYKEFDYLVVNDNFDQ  175 (205)
T ss_dssp             HHHHHHHHHTTGGGCSEEEECSSHHH
T ss_pred             HHHHHHHHHhcccCCCEEEECCCHHH
Confidence            33333222222355777776554333

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=7.4e-09  Score=104.20  Aligned_cols=136  Identities=16%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEEeccccc----CCCCCcHHH------
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARICQDTIN----KGKSGTKVQ------   66 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---------------------~~I~~D~i~----~~~~~~~~~------   66 (761)
                      .+..+|+|+||+||||||+++.|+..++..+                     ..++.+.+.    .+....+..      
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            3457999999999999999999998764211                     111111110    000000000      


Q ss_pred             --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeC-CHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                        ....+.+.+..|+.+|+|.      ++.....+ ..+... .+|++.+ +.+++.+|+.+|..       +.++++..
T Consensus        86 g~~~~~i~~~l~~g~~vild~------~~~g~~~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~-------~~~e~i~~  151 (208)
T 3tau_A           86 GTPLEYVEEKLAAGVDIFLEI------EVQGAMQVRKAMPEG-IFIFLTPPDLSELKNRIIGRGT-------ESMEVVEE  151 (208)
T ss_dssp             EEEHHHHHHHHHTTCCEEEEC------CHHHHHHHHHHCTTS-EEEEEECTTTTTSSCC--------------CCHHHHH
T ss_pred             CCcHHHHHHHHHcCCeEEEEe------eHHHHHHHHHhCCCe-EEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence              0134677889999999998      33333333 222222 3455554 48999999999975       23355555


Q ss_pred             HHHhhhcCCCccCCceEEEEcCChh
Q 004319          143 RMLQKKELPKLSEGFSRITLCQNEN  167 (761)
Q Consensus       143 r~~~~~e~P~~~EgFd~V~vv~~~~  167 (761)
                      ++......-.....||.+++.++.+
T Consensus       152 Rl~~~~~e~~~~~~~d~vivN~~~~  176 (208)
T 3tau_A          152 RMETAKKEIEMMASYDYAVVNDVVA  176 (208)
T ss_dssp             HHHHHHHHHHHGGGSSEEEECSSHH
T ss_pred             HHHHHHHHHHhhccCCEEEECcCHH
Confidence            5544332112234578777665433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.64  E-value=3.5e-07  Score=93.73  Aligned_cols=156  Identities=15%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEec-----------ccccCCC-CCcHHH-HHH----------HH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-----------DTINKGK-SGTKVQ-CLT----------SA   71 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~-----------D~i~~~~-~~~~~~-~~~----------~~   71 (761)
                      ..+..+|++.|+|||||||+++.|++.++.  .+.....           +.+.++. ...... .+.          .+
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i  102 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKV  102 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999998752  2221110           1111222 122211 111          12


Q ss_pred             HHHHHCCCcEEEe----------CC--CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChH
Q 004319           72 SSALKKGKSVFLD----------RC--NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAA  138 (761)
Q Consensus        72 ~~~L~~g~~VIID----------~t--n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~  138 (761)
                      ..++..|..||+|          +.  ++.......+..+ .....+-.+|+|++|.+++.+|+.+|..... +......
T Consensus       103 ~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d-r~e~~~~  181 (229)
T 4eaq_A          103 IPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN-RLDQEDL  181 (229)
T ss_dssp             HHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC------CCCHHHH
T ss_pred             HHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc-chhhhhH
Confidence            3556789999999          43  4555554444444 2222334588999999999999999864311 1111234


Q ss_pred             HHHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHH
Q 004319          139 AVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       139 ~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      +...+....++.....+. ..+++++...+++++..
T Consensus       182 ~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~  216 (229)
T 4eaq_A          182 KFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVE  216 (229)
T ss_dssp             HHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHH
Confidence            444444444432221111 23555565555554443

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.62  E-value=2e-07  Score=92.86  Aligned_cols=108  Identities=14%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec--------ccc----cCCC-CCcHHH-H---------HHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--------DTI----NKGK-SGTKVQ-C---------LTSA   71 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~--------D~i----~~~~-~~~~~~-~---------~~~~   71 (761)
                      .++.+|+|+|+|||||||+++.|++.++   .....+..        +.+    ..+. ...... .         ...+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999998764   22222211        001    1111 111111 0         0234


Q ss_pred             HHHHHCCCcEEEeCCCCCHH---------HHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           72 SSALKKGKSVFLDRCNLERE---------QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~~---------~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      ...+..|..||+|.+.+..-         .+..+..+ ......-.+|+|++|.+++.+|+..|
T Consensus        87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~  150 (215)
T 1nn5_A           87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG  150 (215)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred             HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence            55677888999996321110         12222223 22222335899999999999999644

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.60  E-value=4.2e-08  Score=94.26  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC-----------Cc-H-HHHHHHHHHHHHCCCcEEEe-C--
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS-----------GT-K-VQCLTSASSALKKGKSVFLD-R--   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~-----------~~-~-~~~~~~~~~~L~~g~~VIID-~--   85 (761)
                      .|+|+|+|||||||+|+.|++.++  +.+++.|.+.....           +. . ......+...+.....+||+ +  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~   79 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN--IPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG   79 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence            589999999999999999999998  56688887732111           00 0 01123334455545566665 2  


Q ss_pred             CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           86 CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        86 tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ..+....+..+   +..+   .+|+|++|.+++.+|+.+|.
T Consensus        80 ~~~~~~~~~~l---~~~~---~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           80 LGANEEALNFM---KSRG---TTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             HHTCHHHHHHH---HTTS---EEEEEECCHHHHHHHCBCTT
T ss_pred             EeCCHHHHHHH---HcCC---EEEEEECCHHHHHHHHhCCC
Confidence            23444454433   2233   48999999999999998875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.59  E-value=2.3e-07  Score=91.18  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHH-cCCCeEEEecccccCC-------------CCC---cHHHHHHHHHHHHHCCCc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRS-SARPWARICQDTINKG-------------KSG---TKVQCLTSASSALKKGKS   80 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~-~~~~~~~I~~D~i~~~-------------~~~---~~~~~~~~~~~~L~~g~~   80 (761)
                      .++.+|+|+|+|||||||+++.|++. ++  +.+++.|.+...             ...   ........+...+..+..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~   85 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN   85 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCC
Confidence            34568999999999999999999998 68  788988766210             011   122233444555534557


Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +|+|..+...        +.... .-.+|+|++|.+++.+|+.+|..
T Consensus        86 ~vi~~~~~~~--------~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~  123 (184)
T 1y63_A           86 HVVDYHSSEL--------FPERW-FHMVVVLHTSTEVLFERLTKRQY  123 (184)
T ss_dssp             EEEECSCCTT--------SCGGG-CSEEEEEECCHHHHHHHHHHTTC
T ss_pred             EEEeCchHhh--------hhhcc-CCEEEEEECCHHHHHHHHHhCCC
Confidence            8888753311        11100 11489999999999999999953

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.59  E-value=3.5e-07  Score=90.73  Aligned_cols=107  Identities=18%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCC--eEEEe---cccc----cCC----CCCcHHH-HH----------HHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARP--WARIC---QDTI----NKG----KSGTKVQ-CL----------TSASSAL   75 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~--~~~I~---~D~i----~~~----~~~~~~~-~~----------~~~~~~L   75 (761)
                      +.+|+|+|+|||||||+|+.|++.++..  +....   .+.+    .++    ....... .+          ..+...+
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l   83 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML   83 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999988742  32221   1111    111    1221111 11          1223456


Q ss_pred             HCCCcEEEeCCCCCHHHH--------HHHHHh-CCCCceEEEEEEeCCHHHHHHHHH-hcc
Q 004319           76 KKGKSVFLDRCNLEREQR--------TDFVKL-GGPEVDVHAVVLDLPAKLCISRSV-KRI  126 (761)
Q Consensus        76 ~~g~~VIID~tn~~~~~R--------~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~-~R~  126 (761)
                      ..|..||+|+..++....        ..+..+ ......-.+|+|++|.+++.+|+. +|.
T Consensus        84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            788999999865432111        122223 222222348999999999999998 776

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.58  E-value=5.4e-08  Score=96.75  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +|.|+|++||||||+++.|+. ++  +.+++.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g--~~~i~~d~~   34 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG--AYVLDADKL   34 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC--CEEEEccHH
Confidence            689999999999999999998 77  677887765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.58  E-value=1.8e-07  Score=108.29  Aligned_cols=105  Identities=15%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCCC-----CcHHH------HHHHHHHHHHCCCcE
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGKS-----GTKVQ------CLTSASSALKKGKSV   81 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~~-----~~~~~------~~~~~~~~L~~g~~V   81 (761)
                      ..++.+|+|+|+|||||||+|+.|++.++    ..+.+++.|.++.+..     ...+.      ....+...+..|..|
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V  472 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV  472 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence            34568999999999999999999998876    5678888888763221     11111      113455566788889


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      |+|..+.....|..++++ +..+ .+.+|||++|.++|.+|.
T Consensus       473 I~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          473 IAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred             EEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence            999888888888888887 5544 577899999999999995

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.58  E-value=2e-07  Score=98.45  Aligned_cols=113  Identities=19%  Similarity=0.204  Sum_probs=70.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CCC-------------------CCcHHHH-----
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KGK-------------------SGTKVQC-----   67 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~~-------------------~~~~~~~-----   67 (761)
                      .+.+.+|+|+|+|||||||+|+.|+ .++  +.+|+.|.+.     .+.                   ...+...     
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf  148 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVF  148 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHh
Confidence            3457899999999999999999999 577  6778887761     100                   0011000     


Q ss_pred             ---------------------HHHHHHHHHCC-CcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           68 ---------------------LTSASSALKKG-KSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        68 ---------------------~~~~~~~L~~g-~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                                           ...+......+ ..||+|+..+...   .|...  .+   .+|||++|.+++.+|+.+|
T Consensus       149 ~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~~--~d---~vI~l~a~~ev~~~Rl~~R  220 (281)
T 2f6r_A          149 GNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQSM--VH---EVWTVVIPETEAVRRIVER  220 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGGG--CS---EEEEEECCHHHHHHHHHHH
T ss_pred             CCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHHh--CC---EEEEEcCCHHHHHHHHHHc
Confidence                                 01111122233 5799999655432   12111  22   3889999999999999998


Q ss_pred             ccccCCCCCCChHHHHHHHHhh
Q 004319          126 IEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus       126 ~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      ..       ...+++..++..+
T Consensus       221 ~g-------~s~e~~~~ri~~q  235 (281)
T 2f6r_A          221 DG-------LSEAAAQSRLQSQ  235 (281)
T ss_dssp             HC-------CCHHHHHHHHHTS
T ss_pred             CC-------CCHHHHHHHHHHc
Confidence            53       2345555555554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.57  E-value=5e-08  Score=94.19  Aligned_cols=121  Identities=16%  Similarity=0.185  Sum_probs=68.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cHHHH------------HHHHHHHHHCCCcEEEeC-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TKVQC------------LTSASSALKKGKSVFLDR-   85 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~~~~------------~~~~~~~L~~g~~VIID~-   85 (761)
                      ..+|+|+|+|||||||+++.|+..++  +.+++.|.+.....+ ....+            ...+...+.....+|+.. 
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~--~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~   81 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATG   81 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC--CCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECC
Confidence            45799999999999999999999988  677888776321110 11000            012233444556777752 


Q ss_pred             --CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCCh-HHHHHHHHhhhc
Q 004319           86 --CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKA-AAVVNRMLQKKE  149 (761)
Q Consensus        86 --tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~-~~vI~r~~~~~e  149 (761)
                        ..+....+..+.   ..+.   ++++++|.+++.+|+.+|..++.. ....+ .+.+..++....
T Consensus        82 ~~~~~~~~~~~~l~---~~~~---~i~l~~~~~~l~~R~~~r~~r~~~-~~~~~~~~~~~~~~~~r~  141 (173)
T 1kag_A           82 GGSVKSRETRNRLS---ARGV---VVYLETTIEKQLARTQRDKKRPLL-HVETPPREVLEALANERN  141 (173)
T ss_dssp             TTGGGSHHHHHHHH---HHSE---EEECCCCHHHHHSCC------CCS-SSSCCCHHHHHHHHHHHH
T ss_pred             CeEEecHHHHHHHH---hCCE---EEEEeCCHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHHHHHH
Confidence              333344443332   2233   789999999999999988654321 11222 555666655433

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.57  E-value=1.6e-07  Score=90.40  Aligned_cols=96  Identities=22%  Similarity=0.173  Sum_probs=63.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-cH--------H----HHHHHHHHHHHCCCcEEEeCC-
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-TK--------V----QCLTSASSALKKGKSVFLDRC-   86 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~~--------~----~~~~~~~~~L~~g~~VIID~t-   86 (761)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ ..        .    .....+...+. +..+||+.. 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg--~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~   79 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG   79 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence            3699999999999999999999998  677888877421111 00        0    11122333444 556777642 


Q ss_pred             --CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHH--hc
Q 004319           87 --NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSV--KR  125 (761)
Q Consensus        87 --n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~--~R  125 (761)
                        .+....+..+..   .+   .+|+|++|.+++.+|+.  .|
T Consensus        80 ~~~~~~~~~~~l~~---~~---~~i~l~~~~e~~~~R~~~~~r  116 (173)
T 1e6c_A           80 GMVLLEQNRQFMRA---HG---TVVYLFAPAEELALRLQASLQ  116 (173)
T ss_dssp             TGGGSHHHHHHHHH---HS---EEEEEECCHHHHHHHHHHHHC
T ss_pred             cEEeCHHHHHHHHc---CC---eEEEEECCHHHHHHHHhhccC
Confidence              234455543321   12   48899999999999998  77

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.53  E-value=2.6e-07  Score=106.43  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=78.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC-----CCcH--H----HHHHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----SGTK--V----QCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~-----~~~~--~----~~~~~~~~~L~~g~~VIID   84 (761)
                      .+.+|+|+|+|||||||+|+.|++.++   ..+.+++.|.++...     +...  .    .+...+...+..|..||+|
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d  450 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICA  450 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            468999999999999999999998764   456788988875321     1111  1    1123455667889999999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~  123 (761)
                      .++.....|..+.++ ...  .+.+|+|++|.++|.+|+.
T Consensus       451 ~~~~~~~~r~~~~~~l~~~--d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          451 LVSPYRSARNQVRNMMEEG--KFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             CCCCCHHHHHHHHTTSCTT--CEEEEEEECCGGGHHHHCC
T ss_pred             cCCCCHHHHHHHHHHhhcC--CEEEEEEeCCHHHHHHHhh
Confidence            989888888888877 542  3678999999999999975

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.51  E-value=4.4e-08  Score=97.65  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|.|+|++||||||+++.|+. ++  +.+++.|.+
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg--~~~id~d~~   35 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LG--VPLVDADVV   35 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TT--CCEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CC--CcccchHHH
Confidence            35799999999999999999987 77  566888775

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.49  E-value=9.5e-08  Score=92.84  Aligned_cols=96  Identities=14%  Similarity=0.085  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-c---------H---HHHHHHHHHHHHCCCcEEEeCCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-T---------K---VQCLTSASSALKKGKSVFLDRCNL   88 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-~---------~---~~~~~~~~~~L~~g~~VIID~tn~   88 (761)
                      +|+|+|+|||||||+|+.|++.++  +.+++.|.+.....+ +         +   ......+.+.+.....+||+....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            589999999999999999999998  777998887421110 0         0   111123334455556677773211


Q ss_pred             CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ....+.    ++..+   .+|||++|.+++.+|+.+|.
T Consensus        84 ~~~~~~----l~~~~---~~i~l~~~~e~~~~R~~~r~  114 (175)
T 1via_A           84 FVNVSN----LEKAG---FCIYLKADFEYLKKRLDKDE  114 (175)
T ss_dssp             GGGSTT----GGGGC---EEEEEECCHHHHTTCCCGGG
T ss_pred             EehhhH----HhcCC---EEEEEeCCHHHHHHHHhccc
Confidence            111121    32222   48999999999999998884

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.49  E-value=1.6e-07  Score=92.78  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .++.+|.|+|++||||||+++.|++. +  +.+++.|.+
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g--~~~id~d~~   41 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-G--YPVLDLDAL   41 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-T--CCEEEHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-C--CEEEcccHH
Confidence            45789999999999999999999987 6  667888765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.48  E-value=4e-07  Score=88.76  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc------cCCCCC---------cH--HHHH----HHHHHHH-
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI------NKGKSG---------TK--VQCL----TSASSAL-   75 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i------~~~~~~---------~~--~~~~----~~~~~~L-   75 (761)
                      .+|+|+|+|||||||+|+.|++.++   ..+.+++.|++      +++...         ..  ...+    ..+...+ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            3799999999999999999999876   33677775443      222111         11  1111    2234455 


Q ss_pred             -HCCCcEEEeCCCCCHHH--------HHHHHHhCCCCceEEEEEEeCCHHHHHHH-HHh--cc
Q 004319           76 -KKGKSVFLDRCNLEREQ--------RTDFVKLGGPEVDVHAVVLDLPAKLCISR-SVK--RI  126 (761)
Q Consensus        76 -~~g~~VIID~tn~~~~~--------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R-~~~--R~  126 (761)
                       ..+..||+|+......+        +..+..+. .   -.+|+|++|.+++.+| +..  |.
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~-~---~~vi~l~~~~~~~~~rr~~~~~R~  140 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN-P---SVIFLLEADPKIILSRQKRDTTRN  140 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC-C---SEEEEEECCHHHHHHHHHHCTTTC
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHhcC-C---CEEEEEeCCHHHHHHHHHhhcccC
Confidence             67889999985211000        22222221 1   2488999999998866 666  64

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.47  E-value=3.8e-07  Score=90.97  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC-CC--------CC--------cHHHHHHHHHHHHH-
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK-GK--------SG--------TKVQCLTSASSALK-   76 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~-~~--------~~--------~~~~~~~~~~~~L~-   76 (761)
                      .-.++.+|.|+|+|||||||+++.|+..+ +  +.++++|.+.. +.        ..        ....+...+...+. 
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~   94 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES   94 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence            34456799999999999999999999876 5  77888887731 10        00        12223333333332 


Q ss_pred             --------------CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           77 --------------KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        77 --------------~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                                    ....||+|+..... .+ .+.  ...+   .++++++|.+++.+|+.+|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~~-~~~--~~~d---~~i~l~~~~~~~~~R~~~R~  151 (207)
T 2qt1_A           95 ARHSVVSTDQESAEEIPILIIEGFLLFN-YK-PLD--TIWN---RSYFLTIPYEECKRRRSTRV  151 (207)
T ss_dssp             HTTSSCCC-----CCCCEEEEECTTCTT-CG-GGT--TTCS---EEEEEECCHHHHHHHHHHSC
T ss_pred             CCCCCcCCCeeecCCCCEEEEeehHHcC-cH-HHH--HhcC---eeEEEECCHHHHHHHHHHcC
Confidence                          24578999954432 11 111  2223   38899999999999998885

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.47  E-value=7.8e-07  Score=91.44  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=66.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC------------------CCCCcHHHHHHHHHHHHH--C
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK------------------GKSGTKVQCLTSASSALK--K   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~------------------~~~~~~~~~~~~~~~~L~--~   77 (761)
                      ++.+|+|+|+|||||||+++.|++.++  +..++.+.+ ++                  +.........+.+...+.  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            467999999999999999999999988  333554333 11                  111122222233333343  4


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +..+|+|+......+...+..+...+   .+++|++|.+++.+|+..|..
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~---~vi~L~~~~~~~l~r~~~r~~  150 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVD---LVISLNIPFETLKDRLSRRWI  150 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCC---EEEEEECCHHHHHHHHHTEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCC---EEEEEECCHHHHHHHHHcCCC
Confidence            56788998665544333332222233   478999999999999988854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.44  E-value=4.2e-07  Score=89.59  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc----cc-c----CCCCCcH-HH------HHHHHHHHHHCCCcEEEeC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQD----TI-N----KGKSGTK-VQ------CLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D----~i-~----~~~~~~~-~~------~~~~~~~~L~~g~~VIID~   85 (761)
                      +|+|+|+|||||||+++.|++.++.  .++...    .+ .    +...... .+      ....+...+..+ .+|+|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~vi~d~   78 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY--EIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLE-NIIFDR   78 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC--EEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC-------CEEEES
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC--cEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccC-CEEEEe
Confidence            6899999999999999999999883  334321    00 0    1000000 00      012222334455 499999


Q ss_pred             CCCCH---------------HHHHHHHH----h-CCC-------CceEEEEEEeCCHHHHHHHHHhcc
Q 004319           86 CNLER---------------EQRTDFVK----L-GGP-------EVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        86 tn~~~---------------~~R~~~~~----l-~~~-------~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      +....               ..+..+..    . ...       ...-.+|+|++|.+++.+|+.+|.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  146 (205)
T 2jaq_A           79 TLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG  146 (205)
T ss_dssp             CTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            76642               11111111    1 111       222368999999999999998875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.38  E-value=2.4e-06  Score=84.43  Aligned_cols=102  Identities=20%  Similarity=0.218  Sum_probs=57.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEeccc--------c----cCC-CCCcH-HHH---------HHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDT--------I----NKG-KSGTK-VQC---------LTSASSA   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~--------i----~~~-~~~~~-~~~---------~~~~~~~   74 (761)
                      ++.+|+|+|+|||||||+++.|++.+ +..+..+....        +    .++ ..... ...         ...+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   82 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ   82 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999987 33333332111        0    111 11111 111         1223456


Q ss_pred             HHCCCcEEEeCCCCCHHH--------HHHHHHh-CCCCceEEEEEEeCCHHHHHH
Q 004319           75 LKKGKSVFLDRCNLEREQ--------RTDFVKL-GGPEVDVHAVVLDLPAKLCIS  120 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~--------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~  120 (761)
                      +..|..||+|+...+...        +..+..+ ......-.+|+|++|.+++.+
T Consensus        83 l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~  137 (204)
T 2v54_A           83 LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR  137 (204)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred             HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence            678888999985432210        1112222 221112248999999999877

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.37  E-value=2.1e-06  Score=84.93  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeE-EEecccccC-------CC--C-CcHH---H------------------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWA-RICQDTINK-------GK--S-GTKV---Q------------------   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~-~I~~D~i~~-------~~--~-~~~~---~------------------   66 (761)
                      +..+|+|+|++||||||+++.|...+....- .+. +..+.       +.  . ....   .                  
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS-MTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCC-EECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecc-cccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            3468999999999999999999887621111 111 11110       00  0 0000   0                  


Q ss_pred             --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                        ....+...+..|..||+|........   +.+.  ..-.+.++...++.+++.+|+.+|..
T Consensus        84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~~Rl~~R~~  141 (207)
T 2j41_A           84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQ---VRKK--FPDALFIFLAPPSLEHLRERLVGRGT  141 (207)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCGGGHHH---HHHH--CTTSEEEEEECCC-------------
T ss_pred             CCCHHHHHHHHHcCCeEEEEECHHHHHH---HHHh--cCCeEEEEEECCCHHHHHHHHHhcCC
Confidence              01345666788999999985443322   2222  11113333334678999999998864

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=98.36  E-value=4.1e-08  Score=96.78  Aligned_cols=112  Identities=12%  Similarity=0.024  Sum_probs=75.3

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhC---CCCCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccc
Q 004319          188 GSFGQKNPDAKIQLGIMKFLKKVD---APSNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEV  264 (761)
Q Consensus       188 Gc~~~~~~~~~~~~~i~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (761)
                      |+.+. +.+..+++.+++.+++.-   .+..+  |...       .|.++++   +++|.|.|-|+.  .....+..-.+
T Consensus        50 gGv~~-AI~~aaG~~l~~ec~~~~~~~g~~~~--G~a~-------iT~~~~l---~VIH~vgP~~~~--~~~~~L~~~y~  114 (174)
T 2vri_A           50 GGVAR-AIDILTEGQLQSLSKDYISSNGPLKV--GAGV-------MLECEKF---NVFNVVGPRTGK--HEHSLLVEAYN  114 (174)
T ss_dssp             SHHHH-HHHHHTTTHHHHHHHHHHHHHCSCCT--TCEE-------EEECSSC---EEEEEECCCSST--THHHHHHHHHH
T ss_pred             CcHhH-HHHHHhhHHHHHHHHHHHHhcCCCCC--CeEE-------EEECCCC---EEEEEcCCCCCc--chHHHHHHHHH
Confidence            33443 567777788888887642   12222  3332       3445554   999999998753  12223344455


Q ss_pred             cccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 004319          265 ASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQGS  325 (761)
Q Consensus       265 ~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~~s  325 (761)
                      .|+..      ..|||||+||||+||||+++|++++++++++     ..++++.++..++.
T Consensus       115 ~~L~~------~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~  164 (174)
T 2vri_A          115 SILFE------NGIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSSNEEQ  164 (174)
T ss_dssp             HHHHS------SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSHHHHH
T ss_pred             HHHhh------CCcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCHHHHH
Confidence            55552      2499999999999999999999999999887     46788877654433

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.35  E-value=3.1e-06  Score=85.71  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-----CC-------------------CCcHHH-----------
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-----GK-------------------SGTKVQ-----------   66 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-----~~-------------------~~~~~~-----------   66 (761)
                      .|-|+|.+||||||+++.|.+ +|  +.+++.|.+..     +.                   ..++..           
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g--~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RG--ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CC--CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            588999999999999999987 88  77899887621     00                   001110           


Q ss_pred             -----------HHHHHHHHHHC--CCcEEEeCCCCCH-HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCC
Q 004319           67 -----------CLTSASSALKK--GKSVFLDRCNLER-EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNL  132 (761)
Q Consensus        67 -----------~~~~~~~~L~~--g~~VIID~tn~~~-~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~  132 (761)
                                 ..+.+.+.+..  +..+|+|..-+.. .....+.+.        +|++++|.++..+|+.+|..     
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~--------vi~V~ap~e~r~~Rl~~Rdg-----  154 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDR--------VLVVDCPVDTQIARVMQRNG-----  154 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSE--------EEEEECCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCe--------EEEEECCHHHHHHHHHhcCC-----
Confidence                       11222333322  3458999977776 554444333        88999999999999999974     


Q ss_pred             CCCChHHHHHHHHhhh
Q 004319          133 QGGKAAAVVNRMLQKK  148 (761)
Q Consensus       133 ~~~v~~~vI~r~~~~~  148 (761)
                        ...+++..++..++
T Consensus       155 --~s~eea~~ri~~Q~  168 (210)
T 4i1u_A          155 --FTREQVEAIIARQA  168 (210)
T ss_dssp             --CCHHHHHHHHHHSC
T ss_pred             --CCHHHHHHHHHHcC
Confidence              34566666666654

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=98.34  E-value=3.2e-08  Score=110.36  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             cccccccccccccccccc--cCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC-CeE
Q 004319          239 LEGQEITSLLSDAAGEEV--KGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG-NAR  315 (761)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~-~i~  315 (761)
                      .+++|+|-|-|..+.++-  +.+.+--+.|+. .+...+++|||||.||||+||||++ ++++++++|.+|++..+ ++.
T Consensus       405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLk-LA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~  482 (670)
T 4gua_A          405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVAD-LVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVT  482 (670)
T ss_dssp             EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHH-HHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEE
T ss_pred             ceEEEcCCCCccCCCCchHHHHHHHHHHHHHH-HHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEE
Confidence            789999999998655321  123333444554 6667899999999999999999987 68999999999999876 578


Q ss_pred             EEEecccccchhh
Q 004319          316 LVLVDLTQGSKIL  328 (761)
Q Consensus       316 ~v~vD~~~~s~~l  328 (761)
                      |+++|..-...+.
T Consensus       483 IvcfDKkwe~~Ik  495 (670)
T 4gua_A          483 IYCLDKKWKERID  495 (670)
T ss_dssp             EECSCHHHHHHHH
T ss_pred             EEEecChHHHHHH
Confidence            8888876544443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.34  E-value=9.9e-07  Score=88.68  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++.+|+|+|++||||||+++.|++ ++  +.+++.|.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg--~~~id~D~~   37 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LG--INVIDADII   37 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TT--CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cC--CEEEEccHH
Confidence            467999999999999999999987 77  677887765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.34  E-value=4.1e-07  Score=87.56  Aligned_cols=95  Identities=20%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CCC--------Cc--HHHHHHHHHHHHHCCCcE-EEeCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS--------GT--KVQCLTSASSALKKGKSV-FLDRC   86 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~~--------~~--~~~~~~~~~~~L~~g~~V-IID~t   86 (761)
                      .+|+|+|+|||||||+|+.|++.++  +.+++.|.+..   +..        +.  .......+...+.....+ |++..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg--~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g   85 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK--LEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG   85 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence            3789999999999999999999999  55688887632   111        10  001111222223333344 55431


Q ss_pred             -CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           87 -NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        87 -n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                       ..... +.    ++..   -.+|||++|.+++.+|+.+|
T Consensus        86 ~g~~~~-~~----l~~~---~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           86 GGIVMH-EN----LKGL---GTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             GGGGGC-GG----GTTS---EEEEEEECCHHHHHHHHCC-
T ss_pred             CCEech-hH----HhcC---CEEEEEECCHHHHHHHHhcc
Confidence             11111 11    3222   24899999999999999888

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.32  E-value=8.9e-07  Score=86.28  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEecccc-c-----CCCC---------Cc-HHH-HHHHH---HHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTI-N-----KGKS---------GT-KVQ-CLTSA---SSALK   76 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D~i-~-----~~~~---------~~-~~~-~~~~~---~~~L~   76 (761)
                      +.+|+|+|+|||||||+++.|++.++.   .+.+++.|++ +     .+..         .. ... ....+   ...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   82 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA   82 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhc
Confidence            358999999999999999999998762   2566775533 1     1210         00 111 11111   22234


Q ss_pred             CCCcEEEeCCCCCH--HHH-----HHHHHhCCCCceEEEEEEeCCHHHHHH-HHHh--ccc
Q 004319           77 KGKSVFLDRCNLER--EQR-----TDFVKLGGPEVDVHAVVLDLPAKLCIS-RSVK--RIE  127 (761)
Q Consensus        77 ~g~~VIID~tn~~~--~~R-----~~~~~l~~~~~~v~vV~Ld~p~e~~~~-R~~~--R~~  127 (761)
                      .+..||+|+.....  ...     ..++.....+  + +|||++|.+++.+ |+.+  |..
T Consensus        83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~l~~~~~~~~~rRl~~~~R~r  140 (192)
T 1kht_A           83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPD--L-IIVVETTGDEILMRRMSDETRVR  140 (192)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCS--E-EEEEECCHHHHHHHHHTSSSCSS
T ss_pred             cCCeEEEccceeccccccccccCcHHHHhccCCC--E-EEEEeCCHHHHHHHHhhhcccCC
Confidence            56789999854311  000     0111111122  2 8999999999996 8877  543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.31  E-value=2.2e-06  Score=84.89  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      +|.|+|++||||||+++.|++.++  +.+++.|.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg--~~~~d~d~~~   37 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG--VPYLSSGLLY   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--CCEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC--CceeccchHH
Confidence            899999999999999999999998  6668877764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.31  E-value=4.5e-06  Score=81.62  Aligned_cols=123  Identities=23%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC--------CCCCc----HHHHH----HHHHHHHHCCCcEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK--------GKSGT----KVQCL----TSASSALKKGKSVF   82 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~--------~~~~~----~~~~~----~~~~~~L~~g~~VI   82 (761)
                      +..+++|+|+|||||||+++.|+..++....+++.|.+..        +....    .....    ..+......|..++
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~   87 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVI   87 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeEE
Confidence            4578999999999999999999987655567888877631        11111    11111    11222345567788


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 004319           83 LDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (761)
Q Consensus        83 ID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~  150 (761)
                      +|... ....+..+..+   +..+..+++..+.+++.+|+..|....     ....+.+..+++.+..
T Consensus        88 ~~~~~-~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~-----lld~~~~~~~~~~~~~  146 (191)
T 1zp6_A           88 LDGVV-RPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFAD  146 (191)
T ss_dssp             ECSCC-CTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTC
T ss_pred             EeccC-cHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCc-----cCCHHHHHHHHHHHhc
Confidence            89843 22233333222   334567899999999999999985421     1223455555555543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.31  E-value=2.7e-06  Score=86.35  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=66.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec-----------ccccCCC---CCcHHH-----------HHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ-----------DTINKGK---SGTKVQ-----------CLTSA   71 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~-----------D~i~~~~---~~~~~~-----------~~~~~   71 (761)
                      ..+|++.|++||||||+++.|.+.+.   ..+.....           +.+.++.   ...+..           ..+.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i   85 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI   85 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999988764   22322211           1112221   222111           11335


Q ss_pred             HHHHHCCCcEEEeCCC------------CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           72 SSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn------------~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+|..|..||.|...            +...+-..+..+ ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus        86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~  154 (213)
T 4edh_A           86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR  154 (213)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred             HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            5678899999999832            222222222222 1122344689999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.29  E-value=6.5e-06  Score=83.81  Aligned_cols=136  Identities=14%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeE----EEeccc---ccCCC---CCcHHH---------------------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-PWA----RICQDT---INKGK---SGTKVQ---------------------   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~----~I~~D~---i~~~~---~~~~~~---------------------   66 (761)
                      +-.+++|+|++||||||+.+.|...... .+.    +...+.   ..++.   +.+...                     
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            3468999999999999999999877541 111    111100   00000   000000                     


Q ss_pred             --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHH
Q 004319           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNR  143 (761)
Q Consensus        67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r  143 (761)
                        -...+.+.+..|+.+|+|   ++...+..+.+. . .  ...+++...+.+.+.+|+..|..       +.++++..|
T Consensus        95 g~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~-------~~~e~i~~r  161 (219)
T 1s96_A           95 GTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQ-------DSEEVIAKR  161 (219)
T ss_dssp             EEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSC-------SCHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCC-------CCHHHHHHH
Confidence              013467788899999999   888888888887 6 2  23445555678999999987763       456666667


Q ss_pred             HHhhhcCCCccCCceEEEEcCChh
Q 004319          144 MLQKKELPKLSEGFSRITLCQNEN  167 (761)
Q Consensus       144 ~~~~~e~P~~~EgFd~V~vv~~~~  167 (761)
                      +.+...+-.....|+.+++.++.+
T Consensus       162 l~~a~~e~~~~~~~d~~i~Nd~l~  185 (219)
T 1s96_A          162 MAQAVAEMSHYAEYDYLIVNDDFD  185 (219)
T ss_dssp             HHHHHHHHTTGGGSSEEEECSSHH
T ss_pred             HHHHHHHHhhccCCCEEEECcCHH
Confidence            655422222345688886665433

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.28  E-value=2.2e-06  Score=86.31  Aligned_cols=35  Identities=23%  Similarity=0.558  Sum_probs=30.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|.|+|+|||||||+++.|++.++  +.+++.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i   39 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI   39 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcce
Confidence            45799999999999999999999988  677887766

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.25  E-value=2.3e-06  Score=88.99  Aligned_cols=98  Identities=18%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC----CCCCcH----------HHHH-HHHHHHHHC-CCcEEE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK----GKSGTK----------VQCL-TSASSALKK-GKSVFL   83 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~----~~~~~~----------~~~~-~~~~~~L~~-g~~VII   83 (761)
                      ...|+|+|++||||||+++.|+..++  +.+++.|.+..    +.....          .... ..+...+.. ...||.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg--~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via  125 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG--YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVS  125 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC--CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEe
Confidence            35799999999999999999999999  77788887742    211100          0111 122333333 345555


Q ss_pred             eC--CCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           84 DR--CNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        84 D~--tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ++  +......+..+   + .+   .+|||++|.+++.+|+.+|.
T Consensus       126 ~GgG~v~~~~~~~~l---~-~~---~vV~L~a~~e~l~~Rl~~~~  163 (250)
T 3nwj_A          126 TGGGAVIRPINWKYM---H-KG---ISIWLDVPLEALAHRIAAVG  163 (250)
T ss_dssp             CCGGGGGSHHHHHHH---T-TS---EEEEEECCHHHHHHHHHC--
T ss_pred             cCCCeecCHHHHHHH---h-CC---cEEEEECCHHHHHHHHhhcC
Confidence            44  44444554433   3 23   38999999999999998743

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.22  E-value=1.8e-06  Score=88.49  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=62.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc-------CCCeEEEec-----------ccccCCCCCcHHH-----------HHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS-------ARPWARICQ-----------DTINKGKSGTKVQ-----------CLT   69 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-------~~~~~~I~~-----------D~i~~~~~~~~~~-----------~~~   69 (761)
                      +..+|++.|++||||||+++.|.+.+       +..+.....           ..+.++.......           ..+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~  103 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL  103 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999998876       433322211           1111222222211           113


Q ss_pred             HHHHHHHCCCcEEEeCCCC------------CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           70 SASSALKKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        70 ~~~~~L~~g~~VIID~tn~------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .+..+|..|..||.|....            ..++-..+..+ ...-.+-.+|+|++|.+++.+|+.+|.
T Consensus       104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A          104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            4566788999999997322            22222222222 111223458999999999999999885

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.21  E-value=7.2e-07  Score=89.08  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ...+|.|+|.+||||||+++.|++.++  +.+++.|.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~   46 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRI   46 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHH
Confidence            356899999999999999999999888  778998877

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.21  E-value=3.2e-06  Score=97.45  Aligned_cols=104  Identities=19%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccCCC----CCcH------HHHHHHHHHHH-HCCCcEEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINKGK----SGTK------VQCLTSASSAL-KKGKSVFL   83 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~~~----~~~~------~~~~~~~~~~L-~~g~~VII   83 (761)
                      +..+|+|+|++||||||+++.|+..++    ..+..++.|.+....    ..+.      ...+..+.+.+ ..+..+|.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~  447 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAIC  447 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            557999999999999999999998864    235568888774311    0111      11112222223 35555565


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHH
Q 004319           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSV  123 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~  123 (761)
                      .........|..+.++ +..+ .+..|||++|.++|.+|..
T Consensus       448 ~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          448 APIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             CCCCCCHHHHHHHHHHHHTTS-EEEEEEECC----------
T ss_pred             ecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence            5544446677777777 6666 6789999999999999964

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.20  E-value=1.2e-06  Score=87.50  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC-----CC------------cHHHHHHHHHHHH-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK-----SG------------TKVQCLTSASSAL-   75 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~-----~~------------~~~~~~~~~~~~L-   75 (761)
                      ...+.+|.|+|++||||||+++.|...+   +..+.+++.|.+....     .+            ++..+.+.+...+ 
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            3467899999999999999999998764   4445667777764210     00            1111112211111 


Q ss_pred             ------------------------HCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           76 ------------------------KKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 ------------------------~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                                              ..+..||+|+..+.......+     .+   .+|++++|.+++.+|+.+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~-----~d---~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPF-----FD---FVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTTGGG-----CS---EEEEECCC------------
T ss_pred             cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHHHhh-----cC---EEEEEeCCHHHHHHHHhcCC
Confidence                                    124568999966543221111     22   38999999999999999997

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.19  E-value=6.2e-07  Score=87.90  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..+++|+|++||||||+++.|...+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35899999999999999999998653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.19  E-value=1.3e-06  Score=88.75  Aligned_cols=138  Identities=12%  Similarity=0.145  Sum_probs=57.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHH-HHcCC--------------------CeEEEeccccc----CCCCCc---HH-----H
Q 004319           20 QILVIMVGAPGSGKSTFCEHVM-RSSAR--------------------PWARICQDTIN----KGKSGT---KV-----Q   66 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~-~~~~~--------------------~~~~I~~D~i~----~~~~~~---~~-----~   66 (761)
                      ..++.|+|++||||||+++.|+ ..+..                    .+...+.+.+.    .+....   ..     .
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGV  106 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCCC
Confidence            4589999999999999999999 66521                    11111111100    000000   00     0


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEE-EeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVV-LDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~-Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      ....+.+.+..++.+|+|..   ......+.  ......+..|+ ..++.+++.+|+.+|...       ..+++..++.
T Consensus       107 ~~~~i~~~~~~~~~vild~~---~~g~~~~~--~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~-------~~~~i~~rl~  174 (231)
T 3lnc_A          107 PRKNLEDNVDKGVSTLLVID---WQGAFKFM--EMMREHVVSIFIMPPSMEELRRRLCGRRAD-------DSEVVEARLK  174 (231)
T ss_dssp             ECTTHHHHHHHTCEEEEECC---HHHHHHHH--HHSGGGEEEEEEECSCHHHHHHC---------------------CHH
T ss_pred             CHHHHHHHHHcCCeEEEEcC---HHHHHHHH--HhcCCCeEEEEEECCcHHHHHHHHHHcCCC-------CHHHHHHHHH
Confidence            00234556677888999852   11222222  22212234444 456889999999998542       2233333333


Q ss_pred             hhhcCCCccCCceEEEEcCChhhH
Q 004319          146 QKKELPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~~ei  169 (761)
                      ...........|+.|++.++.+++
T Consensus       175 ~~~~~~~~~~~~d~vI~n~~~e~~  198 (231)
T 3lnc_A          175 GAAFEISHCEAYDYVIVNEDIEET  198 (231)
T ss_dssp             HHHHHHTTGGGSSEEEECSSHHHH
T ss_pred             HHHHHHhhhcCCeEEEECcCHHHH
Confidence            332212234567888776543433

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.15  E-value=1.3e-05  Score=82.51  Aligned_cols=109  Identities=20%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CC-eEEEec-------c----cccC----CCCCcHHH----------H-H
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RP-WARICQ-------D----TINK----GKSGTKVQ----------C-L   68 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~-~~~I~~-------D----~i~~----~~~~~~~~----------~-~   68 (761)
                      ++.+|++.|++||||||+++.|.+.+.   .. ...+..       .    .+..    .......+          . .
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~  105 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVE  105 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999987764   23 222211       1    1111    11221111          1 1


Q ss_pred             HHHHHHHHCCCcEEEeCCC------------CCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           69 TSASSALKKGKSVFLDRCN------------LEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn------------~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +.+..+|..|..||.|...            +..++...+..+ ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus       106 ~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~  177 (236)
T 3lv8_A          106 NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE  177 (236)
T ss_dssp             HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred             HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            3456678899999999732            222222222222 1111223588999999999999999863

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.15  E-value=1.7e-05  Score=80.39  Aligned_cols=108  Identities=20%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---C-CeEEEec-----------cccc--C----CCCCcHHH----------H-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA---R-PWARICQ-----------DTIN--K----GKSGTKVQ----------C-   67 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~-~~~~I~~-----------D~i~--~----~~~~~~~~----------~-   67 (761)
                      ..+|++.|++||||||+++.|.+.+.   . .......           +.+.  .    ....+..+          . 
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~   82 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV   82 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence            35899999999999999999987764   2 2222211           1112  1    11222111          1 


Q ss_pred             HHHHHHHHHCCCcEEEeCCCCC------------HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           68 LTSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        68 ~~~~~~~L~~g~~VIID~tn~~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+.+..+|..|..||.|....+            ..+-..+... ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus        83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~  155 (213)
T 4tmk_A           83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  155 (213)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            1346678899999999983222            2222222222 1111233589999999999999999954

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.14  E-value=1.5e-05  Score=86.09  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----------------CC-------------CCCcHHHH-
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----------------KG-------------KSGTKVQC-   67 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----------------~~-------------~~~~~~~~-   67 (761)
                      ++.+|+|+||+||||||+|..|++.++  ..+|+.|.+.                 .+             ...+.... 
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~--~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~  116 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFR  116 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC--CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHH
Confidence            346999999999999999999999998  7788887761                 00             11111222 


Q ss_pred             ---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHH------------------h-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           68 ---LTSASSALKKGKSVFLDRCNLEREQRTDFVK------------------L-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        68 ---~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~------------------l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                         ...+.+....|+.+|+-+...  -+.+.++.                  + ....+...+|+|+++.+++.+|+.+|
T Consensus       117 ~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  194 (339)
T 3a8t_A          117 SLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR  194 (339)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence               234445557888888765321  12222221                  1 11345678899999999999999998


Q ss_pred             cc
Q 004319          126 IE  127 (761)
Q Consensus       126 ~~  127 (761)
                      ..
T Consensus       195 ~~  196 (339)
T 3a8t_A          195 VD  196 (339)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.14  E-value=2.3e-05  Score=78.52  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      |.+|+|+|++||||||+++.|++.++  +.+++.|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g--~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS--MIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC--CceecCChH
Confidence            46799999999999999999999988  667887665

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.12  E-value=1.1e-05  Score=81.15  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEec-------ccc----cCCC-CCcHHH-----------HHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARICQ-------DTI----NKGK-SGTKVQ-----------CLTSASSAL   75 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~~-------D~i----~~~~-~~~~~~-----------~~~~~~~~L   75 (761)
                      ..|++-|+.||||||+++.|.+.+..  .+.....       ..+    .++. .....+           ....+..+|
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l   82 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL   82 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999988742  2322211       111    1222 111111           123456778


Q ss_pred             HCCCcEEEeCCCC------------CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           76 KKGKSVFLDRCNL------------EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        76 ~~g~~VIID~tn~------------~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ..|..||.|....            ...+-..+... ...-.+=.+|+|++|.+++.+|+.+|...
T Consensus        83 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~  148 (205)
T 4hlc_A           83 KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD  148 (205)
T ss_dssp             HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC----
T ss_pred             HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc
Confidence            9999999998332            12222222222 11111224899999999999999988753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.09  E-value=2.6e-05  Score=79.56  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..+.+|.|+|++||||||+++.|++.++  +.+++.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~   50 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM   50 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCe
Confidence            4456899999999999999999999888  667887666

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.08  E-value=1.3e-05  Score=83.05  Aligned_cols=36  Identities=25%  Similarity=0.534  Sum_probs=30.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ..+|.|+|++||||||+++.|++.++  +.+++.|.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg--~~~~d~g~i~   62 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN--WRLLDSGAIY   62 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC--CCcCCCCcee
Confidence            46899999999999999999999998  6667766653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.07  E-value=3.8e-05  Score=76.42  Aligned_cols=134  Identities=12%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---------------------CCeEEEeccccc---------------CCCCCc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA---------------------RPWARICQDTIN---------------KGKSGT   63 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---------------------~~~~~I~~D~i~---------------~~~~~~   63 (761)
                      ..+++|+|++||||||+.+.|...+.                     ..+..++.+.++               ...++.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~   83 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT   83 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCC
Confidence            35789999999999999999987542                     112222221111               000111


Q ss_pred             HHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           64 KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        64 ~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                         -...+.++++.+..+++|.   ..   ..+............++++ ++.+++.+|...|..       ...+.+..
T Consensus        84 ---~~~~i~~~~~~~~~~~~~~---~~---~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~-------~~e~~i~~  147 (198)
T 1lvg_A           84 ---SKEAVRAVQAMNRICVLDV---DL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAK  147 (198)
T ss_dssp             ---EHHHHHHHHHTTCEEEEEC---CH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHH
T ss_pred             ---CHHHHHHHHHcCCcEEEEC---CH---HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCC-------CCHHHHHH
Confidence               0134556677777777765   11   2222231112234445555 558899999998875       23444444


Q ss_pred             HHHhhhcCCCcc---CCceEEEEcCChhhH
Q 004319          143 RMLQKKELPKLS---EGFSRITLCQNENDV  169 (761)
Q Consensus       143 r~~~~~e~P~~~---EgFd~V~vv~~~~ei  169 (761)
                      ++......-...   ..||.|++.++.++.
T Consensus       148 ~l~~~~~~~~~a~~~~~~D~iivnd~le~a  177 (198)
T 1lvg_A          148 RLAAARTDMESSKEPGLFDLVIINDDLDKA  177 (198)
T ss_dssp             HHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred             HHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence            443332111112   678998888764433

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.06  E-value=1.7e-07  Score=93.56  Aligned_cols=155  Identities=18%  Similarity=0.153  Sum_probs=80.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEe---------cccccC---CCC-----CcH-HHHH---------HHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSAR---PWARIC---------QDTINK---GKS-----GTK-VQCL---------TSA   71 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~---------~D~i~~---~~~-----~~~-~~~~---------~~~   71 (761)
                      +|+|+|++||||||+++.|.+.++.   .+..+.         .|.++.   +..     ... ...+         ..+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   81 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHH
Confidence            7899999999999999999988751   111121         222221   100     111 1111         123


Q ss_pred             HHHHHCCCcEEEeCCCCCHHH--------------HHHHHHhC----CCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319           72 SSALKKGKSVFLDRCNLEREQ--------------RTDFVKLG----GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~~~--------------R~~~~~l~----~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~  133 (761)
                      ...+..|..||+|+.......              +..+..+.    .....-.+|+|++|.+++.+|+.+|....+++.
T Consensus        82 ~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~  161 (214)
T 1gtv_A           82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA  161 (214)
T ss_dssp             HHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEE
T ss_pred             HHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccc
Confidence            334456788999996644211              11112211    111344689999999999999999965311000


Q ss_pred             C---CChHHHHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHHHh
Q 004319          134 G---GKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTY  176 (761)
Q Consensus       134 ~---~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~~~  176 (761)
                      .   +...+...++...+........-..++++++..+++++....
T Consensus       162 ~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i  207 (214)
T 1gtv_A          162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHh
Confidence            0   112344444433332211111012456677766676665543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.96  E-value=5.1e-05  Score=75.78  Aligned_cols=106  Identities=17%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec-------ccc----cCCCCCc----------HHHHHHHHHHHHHC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ-------DTI----NKGKSGT----------KVQCLTSASSALKK   77 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~-------D~i----~~~~~~~----------~~~~~~~~~~~L~~   77 (761)
                      +|++-|+.||||||.++.|.+.+   +..+.....       ..+    .+....+          +.+....+..+|..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~   81 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE   81 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            68889999999999999998765   333433321       011    1111111          12233566778899


Q ss_pred             CCcEEEeCCCCCH------------HHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           78 GKSVFLDRCNLER------------EQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        78 g~~VIID~tn~~~------------~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |..||.|....+.            ..-..+... ...-.+-.+++|++|.+++.+|..+|.+
T Consensus        82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr  144 (197)
T 3hjn_A           82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR  144 (197)
T ss_dssp             TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CT
T ss_pred             CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCc
Confidence            9999999843222            222222222 1111133588999999999999766544

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.92  E-value=5.3e-06  Score=86.14  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=27.0

Q ss_pred             CCCccchhhhhhhh-cccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE
Q 004319            1 MDTDIDDTCKAKDE-EKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI   51 (761)
Q Consensus         1 m~~~~~~~~~~~~~-~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I   51 (761)
                      |..+..-.|-.... .....+.+|+|.|++||||||+++.|++.+.. +.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~-~~~i   54 (263)
T 1p5z_B            4 MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCED-WEVV   54 (263)
T ss_dssp             -------------------CCEEEEEECSTTSSHHHHHTTTGGGCTT-EEEE
T ss_pred             cccchhccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcCC-CEEE
Confidence            34444455543333 23346789999999999999999999998732 4445

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.92  E-value=6e-06  Score=88.90  Aligned_cols=107  Identities=17%  Similarity=0.106  Sum_probs=67.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccC--------------CCCC--cHHHHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINK--------------GKSG--TKVQCLTSASSAL   75 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~--------------~~~~--~~~~~~~~~~~~L   75 (761)
                      ...|.+|.|+|++||||||+++.|...+.     .....++.|.+..              +...  +.... ......+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l-~~~L~~L  167 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSL-LRVLNAI  167 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHH-HHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHH-HHHHHhh
Confidence            45688999999999999999999987764     2466788887631              1111  12222 2333445


Q ss_pred             HCCC---------------------------cEEEeCCCCCHHHH-----HHHHHh-CCCCceEEEEEEeCCHHHHHHHH
Q 004319           76 KKGK---------------------------SVFLDRCNLEREQR-----TDFVKL-GGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        76 ~~g~---------------------------~VIID~tn~~~~~R-----~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                      ..|+                           .+|+|+.++-...+     ..|..+ ...+   ..||+++|.+++++|.
T Consensus       168 ~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D---~~I~Vda~~d~~~~R~  244 (321)
T 3tqc_A          168 KSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFD---FSLFVDAQAQVIQKWY  244 (321)
T ss_dssp             HTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCS---EEEEEECCHHHHHHHH
T ss_pred             hccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcC---eEEEEECCHHHHHHHH
Confidence            4444                           25777755443221     011111 1123   3889999999999999


Q ss_pred             Hhccc
Q 004319          123 VKRIE  127 (761)
Q Consensus       123 ~~R~~  127 (761)
                      .+|..
T Consensus       245 i~Rd~  249 (321)
T 3tqc_A          245 IDRVL  249 (321)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99974

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.92  E-value=4e-05  Score=78.82  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +|.+|.|.|+|||||||+++.|++.++  +.+++.|.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg--~~~~d~g~~   43 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG--ARYLDTGAM   43 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCCcH
Confidence            567999999999999999999999998  677887766

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.90  E-value=4.7e-05  Score=76.28  Aligned_cols=98  Identities=9%  Similarity=0.028  Sum_probs=63.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-----CC----------CCCc--HH-----------------
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-----KG----------KSGT--KV-----------------   65 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-----~~----------~~~~--~~-----------------   65 (761)
                      ..+|.|.|++||||||+++.|++.++  +.+++.+.+.     .|          +...  ..                 
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg--~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN--IPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT--CCEECHHHHHHTTCC---------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC--cCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            35899999999999999999999999  5557755432     01          0000  00                 


Q ss_pred             HHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           66 QCLTSASSALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        66 ~~~~~~~~~L~--~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .....+.+.+.  ...++|+++.-.      .++ ++.. .....|||.+|.+++.+|+.+|..
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~g------~~v-l~~~-~~~~~V~L~A~~e~r~~R~~~~~~  139 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRCA------EEI-LSDN-PNMISAFILGDKDTKTKRVMEREG  139 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTTH------HHH-TTTC-TTEEEEEEEECHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECCc------chh-cCCC-CCeEEEEEECCHHHHHHHHHHHhC
Confidence            12244445566  667888888321      121 2221 135689999999999999987743

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.89  E-value=3.4e-05  Score=77.11  Aligned_cols=120  Identities=24%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC--------------CCC--CcHHHHHHHHHHHHHC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK--------------GKS--GTKVQCLTSASSALKK   77 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~--------------~~~--~~~~~~~~~~~~~L~~   77 (761)
                      ..+..+|.|+|++||||||+++.|+..+.   .....+..|.+.-              +..  .....+... ...+..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~   97 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL-CHALKH   97 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH-HHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH-HHHHhc
Confidence            35678999999999999999999987764   2355666654420              000  011112222 222322


Q ss_pred             C--------------------------CcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccC
Q 004319           78 G--------------------------KSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEG  130 (761)
Q Consensus        78 g--------------------------~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~  130 (761)
                      +                          +.+|+|+..+-... ..|..+ ...+.   .+++++|.+++.+|+.+|....+
T Consensus        98 ~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~l~~~~d~---~i~vd~~~~~~~~R~~~R~~~~g  173 (208)
T 3c8u_A           98 QERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRDLTAIWDV---SIRLEVPMADLEARLVQRWLDHG  173 (208)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGGGGGTCSE---EEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHHHHHhcCE---EEEEeCCHHHHHHHHHHHHHhcC
Confidence            2                          45788884431111 012223 22333   88999999999999999964322


Q ss_pred             CCCCCChHHHHHHHH
Q 004319          131 NLQGGKAAAVVNRML  145 (761)
Q Consensus       131 ~~~~~v~~~vI~r~~  145 (761)
                          ...+++..++.
T Consensus       174 ----~t~~~~~~~~~  184 (208)
T 3c8u_A          174 ----LNHDAAVARAQ  184 (208)
T ss_dssp             ----CCHHHHHHHHH
T ss_pred             ----CCHHHHHHHHH
Confidence                34455555544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.88  E-value=1.1e-05  Score=82.36  Aligned_cols=109  Identities=16%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC----CeEE-Eec-----------ccccC-CCCCcHHHH----------H
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR----PWAR-ICQ-----------DTINK-GKSGTKVQC----------L   68 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~----~~~~-I~~-----------D~i~~-~~~~~~~~~----------~   68 (761)
                      ....+.+|++.|++||||||+++.|.+.+..    .... ...           +.+.+ .......+.          .
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            4456789999999999999999999876542    3333 111           11111 112222221          1


Q ss_pred             -HHHHHHHHCCCcEEEeCCCCC------------HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           69 -TSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        69 -~~~~~~L~~g~~VIID~tn~~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                       +.+..+|..|..||.|....+            .++-..+..+ .. -.+=.+|+|++|.+++.+|+ +|.
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rd  166 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKN  166 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccC
Confidence             235567889999999994321            1222222222 22 12335899999999999998 443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.82  E-value=1.9e-05  Score=79.21  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+..+|+|+||+||||||+++.|.+.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            334567999999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.80  E-value=2.9e-05  Score=82.30  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINK   58 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~   58 (761)
                      ++.+|.|.|++||||||+|+.|++.++   ..+.+|+.|.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            456899999999999999999998765   4467899988863

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.78  E-value=9.5e-05  Score=79.55  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++.+|+|+|++||||||+|+.|++.++  +.+|+.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~--~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP--CELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC--CcEEeccch
Confidence            567999999999999999999999998  778888765

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.75  E-value=7.5e-05  Score=76.20  Aligned_cols=100  Identities=6%  Similarity=0.004  Sum_probs=63.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---------------CCCCc---------------------
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---------------GKSGT---------------------   63 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---------------~~~~~---------------------   63 (761)
                      ..+|.|.|.+||||||+|+.|++.++  +.+++.|.+..               ++...                     
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg--~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG--IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT--CEEECHHHHHHHHHCC------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC--CcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            46899999999999999999999999  66688766520               00000                     


Q ss_pred             ------HHH---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           64 ------KVQ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        64 ------~~~---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                            .+.   ....+.+.|....++||+++...  .   .+.. +. ......|||++|.+++.+|+.+|..
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg--~---vl~~~~~-~~~~~~VfL~A~~e~r~~Ri~~~~~  159 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG--Y---VLDQDED-IERLIRIFVYTDKVKKVQRVMEVDC  159 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTHH--H---HHHHCTT-CCEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcc--h---hcccccC-CCCeEEEEEECCHHHHHHHHHHhcC
Confidence                  001   11233444544457777764321  1   1111 11 1345689999999999999988754

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.65  E-value=4.7e-05  Score=77.38  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec---c-c----c----cCC--CCCcHHH----------HHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ---D-T----I----NKG--KSGTKVQ----------CLTSASSA   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~---D-~----i----~~~--~~~~~~~----------~~~~~~~~   74 (761)
                      +..+|++.|++||||||+++.|.+.++.....+..   + .    +    .+.  ....+..          ..+.+..+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~pa   83 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD   83 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999998743222221   0 0    1    111  1111111          12356677


Q ss_pred             HHCCCcEEEeCCCCCHHHH----------HHHHH-hCCCCc-eEEEEEE-eCCHHHHHHHHHhc
Q 004319           75 LKKGKSVFLDRCNLEREQR----------TDFVK-LGGPEV-DVHAVVL-DLPAKLCISRSVKR  125 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R----------~~~~~-l~~~~~-~v~vV~L-d~p~e~~~~R~~~R  125 (761)
                      |..|..||.|....+.--.          ..|+. +..... +=.+|+| ++|.+++.+|...|
T Consensus        84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~  147 (216)
T 3tmk_A           84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG  147 (216)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred             HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence            8899999999944332110          11222 211111 2368899 99999999886544

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=97.64  E-value=4e-06  Score=80.38  Aligned_cols=66  Identities=14%  Similarity=0.034  Sum_probs=44.8

Q ss_pred             ccccccccccc-cccccccccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHH
Q 004319          238 CLEGQEITSLL-SDAAGEEVKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVE  305 (761)
Q Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~  305 (761)
                      +.+++|.+++- |.. ......++.-.+.++. .....+++|||||+||||+||||++++++++.+++.
T Consensus        72 ~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~-~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~  138 (149)
T 2eee_A           72 GRYIYYLITKKRASH-KPTYENLQKSLEAMKS-HCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFE  138 (149)
T ss_dssp             SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHH-HHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHH-HHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Confidence            57899999887 432 2121112222333333 333457899999999999999999999999876554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.63  E-value=0.00038  Score=69.10  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      .++.+|.|+|++||||||+++.|+..++..+.++++|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            3567899999999999999999998765235567887653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.55  E-value=0.00028  Score=75.13  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i   56 (761)
                      ..+.+|.|+|++||||||+++.|...++     ..+.+++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5668999999999999999999987654     23556666654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.49  E-value=0.00031  Score=75.99  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++.+|+|+|++||||||+|+.|++.++  ..+|+.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFN--GEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT--EEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcC--Cceeccccc
Confidence            346999999999999999999999998  778998876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.47  E-value=0.0011  Score=71.07  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|+|+||+||||||+|..|++.++  ..+|+.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT--EEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc--cceeecCcc
Confidence            46899999999999999999999987  778888865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.46  E-value=0.00053  Score=70.22  Aligned_cols=40  Identities=30%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~--------~~~~I~~D~i~   57 (761)
                      .+..+|.|+|++||||||+++.|+..++.        ....+.+|.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence            35679999999999999999999987762        23357777653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.45  E-value=0.0014  Score=65.94  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc--------cCC-----------------------------CC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI--------NKG-----------------------------KS   61 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i--------~~~-----------------------------~~   61 (761)
                      +..++.|+|++||||||+++.|...+. ....+..+..        +++                             .+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  100 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY  100 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence            346899999999999999999987652 0111221110        000                             00


Q ss_pred             CcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEE-eCCHHHHHHHHHhcccccCCCCCCChHH
Q 004319           62 GTKVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVL-DLPAKLCISRSVKRIEHEGNLQGGKAAA  139 (761)
Q Consensus        62 ~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~L-d~p~e~~~~R~~~R~~~~~~~~~~v~~~  139 (761)
                      +..   ...+.+.+..+..+++|. .+...++.+  .. .  ......+++ ..+..++.+|...|...       ..+.
T Consensus       101 g~~---~~~i~~~l~~~~~~il~~-~lsggq~qR--~~i~--~~~~~~~ll~~~~~~~Lde~~~~~d~~-------~~~~  165 (218)
T 1z6g_A          101 GTL---KSEYDKAKEQNKICLFEM-NINGVKQLK--KSTH--IKNALYIFIKPPSTDVLLSRLLTRNTE-------NQEQ  165 (218)
T ss_dssp             EEE---HHHHHHHHHTTCEEEEEE-CHHHHHHHT--TCSS--CCSCEEEEEECSCHHHHHHHHHHTCCC-------CHHH
T ss_pred             CCc---HHHHHHHHhCCCcEEEEe-cHHHHHHHH--HHhc--CCCcEEEEEeCcCHHHHHHHHHhcCCC-------CHHH
Confidence            000   134566777788888873 333222221  11 1  011124444 57789999999888652       3333


Q ss_pred             HHHHHHhhhcCCCc--cCCceEEEEcCChhhHHHHHH
Q 004319          140 VVNRMLQKKELPKL--SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       140 vI~r~~~~~e~P~~--~EgFd~V~vv~~~~ei~~~l~  174 (761)
                      +..++......-..  ...|+.|++.++.+++...+.
T Consensus       166 i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~  202 (218)
T 1z6g_A          166 IQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK  202 (218)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence            33333322111001  267899988887655544433

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.45  E-value=0.00011  Score=75.16  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++.+|++.|++||||||+++.|++.+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999999984

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.41  E-value=0.0022  Score=68.50  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..+|.+|+|+||+||||||+|..|++.++  ..+|+.|..
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds~   44 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILP--VELISVDSA   44 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSC--EEEEECCTT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCC--CcEEecccc
Confidence            34678999999999999999999999988  677888764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.38  E-value=0.0002  Score=72.72  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .+..+|.|.|+.||||||+++.|...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.35  E-value=0.00029  Score=74.45  Aligned_cols=49  Identities=22%  Similarity=0.351  Sum_probs=38.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ   66 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~   66 (761)
                      ..|..++|.|+||+|||++|+.+++.++.++..++...+...+.+....
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~   82 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAK   82 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHH
Confidence            4567899999999999999999999999888888877776666554443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00047  Score=76.20  Aligned_cols=58  Identities=17%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~   76 (761)
                      .|.=|+|.||||+|||++|++++..++.++..++...+...+.+..+..++.+....+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR  238 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH
Confidence            3556999999999999999999999998888888888888888877766655544443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.15  E-value=0.00077  Score=69.98  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~t   86 (761)
                      .+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+...+...  ..++||-.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  119 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI  119 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECH
Confidence            445689999999999999999999999778778777776665555444444333333333  34677763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00064  Score=75.60  Aligned_cols=59  Identities=20%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKK   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~   77 (761)
                      .|.=|+|.||||+|||++|++++..++.++..++...+...+.+..+..+..+....+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~  273 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE  273 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence            45679999999999999999999999988888888888888888777666555544443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.00071  Score=75.66  Aligned_cols=58  Identities=17%  Similarity=0.205  Sum_probs=46.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK   76 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~   76 (761)
                      .|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+....+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~  271 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK  271 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH
Confidence            4567999999999999999999999998888888888888888877665554444443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00063  Score=76.04  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=46.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS   73 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~   73 (761)
                      +.|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....++.+..
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~  268 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFA  268 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHH
Confidence            34667999999999999999999999998888888888888888877665544443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00078  Score=75.15  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASS   73 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~   73 (761)
                      .|.=|+|.||||+|||++|++++..++.++..++...+...+.+.....+..+..
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~  259 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFR  259 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHH
Confidence            4556999999999999999999999998888888888877777776665544443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00087  Score=75.20  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL   75 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L   75 (761)
                      ..|.=|+|.||||+|||++|++++.+++.++..++...+...+.+.....++.+....
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A  298 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA  298 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence            3566799999999999999999999999888888888888888887766655444443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.02  E-value=0.0012  Score=68.98  Aligned_cols=68  Identities=15%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-H-CCCcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-K-KGKSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~-~g~~VIID~t   86 (761)
                      .+.-++|.|+||+||||+|+.++..++..+..++...+.....+........+.... . ....++||-.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  122 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV  122 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccH
Confidence            356789999999999999999999998777777776665555554444333333322 2 3345778863

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.02  E-value=0.001  Score=71.18  Aligned_cols=40  Identities=18%  Similarity=0.129  Sum_probs=31.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTI   56 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i   56 (761)
                      ..++.+|.|+|++||||||+++.|...+.     .....+.+|..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            45678999999999999999999987543     23566777655

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.88  E-value=0.0018  Score=66.41  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK   60 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~   60 (761)
                      +.-++|+|+||+||||+|+.++..++.++..++...+....
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~   85 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF   85 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence            34488999999999999999999988777777766554433

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.86  E-value=0.0022  Score=65.37  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHH-HHHHC-CCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSAS-SALKK-GKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~-~~L~~-g~~VIID~tn   87 (761)
                      .+.-++|.|+||+||||+|+.++..++.++..++...+.....+........+. .+... +..++||...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid  108 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEID  108 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcc
Confidence            345688999999999999999999999888777766654433333322222222 22222 3346777743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.78  E-value=0.0015  Score=69.62  Aligned_cols=67  Identities=15%  Similarity=0.319  Sum_probs=48.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC--CcEEEeCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG--KSVFLDRC   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g--~~VIID~t   86 (761)
                      +.-++|.|+||+|||++|+.++...+..+..++...+...+.+.....+..+.......  ..++||-.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi  119 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV  119 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechh
Confidence            45699999999999999999999999778788877776666666555444443333322  35677873

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.76  E-value=0.0013  Score=71.27  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~t   86 (761)
                      +.-|+|.|+||+|||++|+.++..++.++..++...+...+.+.....+..+.....  ....++||-.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEi  152 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV  152 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEech
Confidence            345888999999999999999999997777777666655554443343333333332  3345777863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.73  E-value=0.002  Score=68.94  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~t   86 (761)
                      .+.-|+|.|+||+|||++|+.++..+ +..+..++...+...+.+.....+..+.....  ....++||-.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEi  114 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI  114 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecH
Confidence            34678999999999999999999988 66676777666655555544444433333332  2335777863

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.73  E-value=0.0026  Score=68.90  Aligned_cols=67  Identities=15%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~   85 (761)
                      .+.-|+|.|+||+||||+|+.++..++..+..++...+...+.+........+.....  .+..++||-
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE  184 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE  184 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            4567899999999999999999999987777787777665555544444433333332  234577886

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.71  E-value=0.0063  Score=64.51  Aligned_cols=25  Identities=12%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..+.+|+|+||   ||+|+.++|.+.+.
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~  127 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFP  127 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence            34568899997   79999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.68  E-value=0.00065  Score=65.76  Aligned_cols=80  Identities=15%  Similarity=0.060  Sum_probs=46.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCCCcHHH-HHHHHHHHHHCCCcEEEeCC---CCCHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKSGTKVQ-CLTSASSALKKGKSVFLDRC---NLERE   91 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~~g~~VIID~t---n~~~~   91 (761)
                      ...++|+|+||+||||+++.++..+    +.....++...+.+........ ....+...+.....+|+|-.   .....
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~  117 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDW  117 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHH
Confidence            4678999999999999999988664    4334445543331100000000 00123345567778999985   35566


Q ss_pred             HHHHHHHh
Q 004319           92 QRTDFVKL   99 (761)
Q Consensus        92 ~R~~~~~l   99 (761)
                      .+..+..+
T Consensus       118 ~~~~l~~l  125 (180)
T 3ec2_A          118 QRELISYI  125 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.67  E-value=0.0043  Score=61.64  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +-.++.|+|++||||||+.+.|...+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            446899999999999999999987763

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.65  E-value=0.0062  Score=63.74  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=45.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC-------CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA-------RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~-------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ...-++|.|+||+||||+|+.+++.+.       .++..++...+.....+........+.... .+..+|||-..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid  140 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAY  140 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-CCCEEEEEChh
Confidence            344689999999999999999887763       257777777665555554433332222222 45678888753

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=96.61  E-value=0.00071  Score=65.26  Aligned_cols=65  Identities=8%  Similarity=-0.026  Sum_probs=41.2

Q ss_pred             cccccccccc-ccccccc-ccCCCCcccccccc---CCCCCCCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319          239 LEGQEITSLL-SDAAGEE-VKGTENPEVASVNQ---NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (761)
Q Consensus       239 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v  304 (761)
                      -++.|.+++. |+..++. .....+.++.|+..   .....+. |||||+||||+||||++++++++.++.
T Consensus        77 ~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l  146 (158)
T 2fg1_A           77 LYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEEL  146 (158)
T ss_dssp             EEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHT
T ss_pred             eEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHh
Confidence            7889999988 5422211 11122234444432   1222244 999999999999999999999865543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.57  E-value=0.0045  Score=68.38  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      +.+|+|+||+||||||+|..|++.++  ..+|+.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~--~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN--GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT--EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC--CeEeecCc
Confidence            45899999999999999999999998  67788876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.55  E-value=0.0033  Score=65.77  Aligned_cols=64  Identities=17%  Similarity=0.304  Sum_probs=41.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HC-CCcEEEeCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KK-GKSVFLDRC   86 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~-g~~VIID~t   86 (761)
                      ++|+|+|||||||+++.++...+..+..++...+...+.+.....+..+.+.. .. ...+++|..
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Dei  112 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV  112 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehh
Confidence            89999999999999999999888656666665554443333333333333332 22 234566763

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.54  E-value=0.0029  Score=60.16  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+..++|+|+||+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345568999999999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.52  E-value=0.0089  Score=66.85  Aligned_cols=40  Identities=33%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      .+|.+|+++|++|+||||++.+|+..+   +.....++.|.++
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            358999999999999999999988654   4566778877653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.50  E-value=0.014  Score=60.12  Aligned_cols=37  Identities=27%  Similarity=0.594  Sum_probs=31.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      ...+.-++|.|+||+||||+|+.++...+.++..++.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~   97 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS   97 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeC
Confidence            4456789999999999999999999998877766643

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.49  E-value=0.0082  Score=63.96  Aligned_cols=129  Identities=11%  Similarity=0.049  Sum_probs=72.5

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEE---ecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARI---CQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQR   93 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I---~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R   93 (761)
                      ...+..|||+||   ||+|+.++|.+.++..|..-   +.| +.++.+.+    ...+.+.+..|+.+|+|-      +.
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~~r~-i~~~~fis----~~~V~~vl~~Gk~~ILDI------d~  207 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETVSRT-DSPSKIIK----LDTVRVIAEKDKHALLDV------TP  207 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC---------CCC----HHHHHHHHHTTCEEEECC------CH
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccccccc-ccCCCeec----HHHHHHHHHCCCcEEEEE------CH
Confidence            344556889999   79999999999988655432   223 33444442    356778889999999998      44


Q ss_pred             HHHHHh-CCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEE-EcCChhh
Q 004319           94 TDFVKL-GGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRIT-LCQNEND  168 (761)
Q Consensus        94 ~~~~~l-~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~-vv~~~~e  168 (761)
                      +....+ ...-..+ +||+. .+.+++.+| ..|....      . ++.+.+++... + +-.....||.|+ +.++.++
T Consensus       208 QGa~~lk~~~~~pi-~IFI~PPS~eeL~~r-r~R~~~e------s-ee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~  278 (308)
T 3kfv_A          208 SAIERLNYVQYYPI-VVFFIPESRPALKAL-RQWLAPA------S-RRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDT  278 (308)
T ss_dssp             HHHHHHHHTTCCCE-EEEEEESCHHHHHHH-HHHHSTT------C-CCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTH
T ss_pred             HHHHHHHhcCCCCE-EEEEeCCCHHHHHHH-HhcCCCC------C-HHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHH
Confidence            444444 2222333 55555 556777776 5554311      1 12345554432 1 111235699998 5554443

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.48  E-value=0.0046  Score=66.75  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +...|++-|+-||||||+++.|++.++
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            347899999999999999999998876

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.43  E-value=0.0029  Score=67.11  Aligned_cols=134  Identities=14%  Similarity=0.180  Sum_probs=72.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEE-Ee---------------------cccc----cCCCCCcHHH-----
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWAR-IC---------------------QDTI----NKGKSGTKVQ-----   66 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~-I~---------------------~D~i----~~~~~~~~~~-----   66 (761)
                      +....|||+||   ||+|+.++|.+.++..+.. |+                     .+.+    .++.+..+.+     
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~  174 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL  174 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence            34567888887   5999999999987633311 11                     1100    0111110000     


Q ss_pred             ---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           67 ---CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        67 ---~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                         ....+.+.+..|+.+|+|..      .+....++.......+||+.+| .+++.+|+..|..       +..+....
T Consensus       175 YGT~~~~V~~~~~~gk~viLdid------~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~-------e~~~~~~~  241 (292)
T 3tvt_A          175 YGTSVASVREVAEKGKHCILDVS------GNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE-------EQAKKTYE  241 (292)
T ss_dssp             EEEEHHHHHHHHHHTCEEEECCC------THHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT-------THHHHHHH
T ss_pred             eEEehHHHHHHHHcCCcEEEecc------chhhhhcccccccceEEEEECCCHHHHHHHHhCCCc-------hhHHHHHH
Confidence               12466788899999999983      2333333112223456777664 6777777655543       23345555


Q ss_pred             HHHhhhcCCCccCCceEEEEcCChhhH
Q 004319          143 RMLQKKELPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus       143 r~~~~~e~P~~~EgFd~V~vv~~~~ei  169 (761)
                      ++.+.-.  ...+-||.|++.++.++.
T Consensus       242 r~~k~e~--e~~~~fD~vIvNddle~a  266 (292)
T 3tvt_A          242 RAIKMEQ--EFGEYFTGVVQGDTIEEI  266 (292)
T ss_dssp             HHHHHHH--HHTTTCSEEECCSSHHHH
T ss_pred             HHHHHHH--hhhhhCCEEEECcCHHHH
Confidence            5433211  123558988776654443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.37  E-value=0.0047  Score=63.10  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=29.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ++|+|+||+||||+++.++...+..+..++...+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~   86 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   86 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence            89999999999999999999887667667654443

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.34  E-value=0.0039  Score=68.27  Aligned_cols=67  Identities=16%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HCC-CcEEEeCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKG-KSVFLDRC   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~g-~~VIID~t   86 (761)
                      +.-++|.|+||+|||++|+.++..++..+..++...+.....+.....+..+...+ ... ..++||-.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEi  216 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQV  216 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECc
Confidence            45789999999999999999999999777777776665444433333333332222 333 35778875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.33  E-value=0.0038  Score=71.17  Aligned_cols=62  Identities=5%  Similarity=0.092  Sum_probs=44.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL   88 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~   88 (761)
                      ...+|+|+|++||||||+|+.|++.++.     .+.+++.|.  .      ......+...++.|..||+...+.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~------~ei~~va~~~~~~G~~Vv~~~~sp  460 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K------TELLSLIQDFIGSGSGLIIPDQWE  460 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C------HHHHTTHHHHHHTTCEEEESSCCC
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c------HHHHHHHHHHHhcCCeEEEecCCH
Confidence            4579999999999999999999999873     346677776  1      112233445556777777766444

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.31  E-value=0.0033  Score=59.68  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ....++|+|++||||||+++.++...   +.....++...+...             ..+.....+|||-..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~~~~~~lLilDE~~   93 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DAAFEAEYLAVDQVE   93 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GGGGGCSEEEEESTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HHHhCCCEEEEeCcc
Confidence            34578899999999999999998765   444555665444322             113445667888743

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.28  E-value=0.032  Score=55.91  Aligned_cols=102  Identities=10%  Similarity=0.036  Sum_probs=60.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEec-ccccC------CC----------CCc-HH-HHH---HHHH--
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ-DTINK------GK----------SGT-KV-QCL---TSAS--   72 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~-D~i~~------~~----------~~~-~~-~~~---~~~~--   72 (761)
                      .++.||+++|.|||||+|+|+.+.+.++. .+..++. |.+++      |.          +.. .. ...   +.++  
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            35679999999999999999999887752 2445553 43321      10          000 00 110   1111  


Q ss_pred             -------HHHH--CCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHH
Q 004319           73 -------SALK--KGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRS  122 (761)
Q Consensus        73 -------~~L~--~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~  122 (761)
                             .++.  ....||||+ -........+.+.  .+..+.+|.+.++.++..+|.
T Consensus        89 d~~~~~~~~~~~~~~~~vII~d-vR~~~Ev~~fr~~--~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSD-TRRVSDIQWFREA--YGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECC-CCSHHHHHHHHHH--HGGGEEEEEEEECHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCcEEEeC-CCCHHHHHHHHHh--CCCcEEEEEEECCHHHHHHHh
Confidence                   1111  123589998 4555555555443  234577899999999999884

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.26  E-value=0.0031  Score=60.05  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+..++|+|+||+||||+++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999999876

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.25  E-value=0.01  Score=57.66  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++|.|+||+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999998864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.22  E-value=0.0047  Score=73.97  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=48.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC-c-EEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK-S-VFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~-~-VIID~   85 (761)
                      .|.=|+|.||||+|||++|++++..++..+..++...+...+.+..+..+..+.+...... + ++||-
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDE  305 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  305 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEeh
Confidence            4667999999999999999999999997777787767766666666665554444443322 2 44454

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.21  E-value=0.013  Score=54.78  Aligned_cols=70  Identities=24%  Similarity=0.339  Sum_probs=42.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC-CCHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFV   97 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn-~~~~~R~~~~   97 (761)
                      -|+|.|+||+|||++|+.+....   +.++. ++...+.+.  ......+.     ...+..++||... +.......+.
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~-----~a~~g~l~ldei~~l~~~~q~~Ll   97 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIA-----LAQGGTLVLSHPEHLTREQQYHLV   97 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHH-----HHTTSCEEEECGGGSCHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHH-----HcCCcEEEEcChHHCCHHHHHHHH
Confidence            47899999999999999998875   34566 654444322  11111111     1356678888854 3344444455


Q ss_pred             Hh
Q 004319           98 KL   99 (761)
Q Consensus        98 ~l   99 (761)
                      ..
T Consensus        98 ~~   99 (145)
T 3n70_A           98 QL   99 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.21  E-value=0.002  Score=68.01  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      ..+.-++|.|+||+||||+|+.++..++..+..++.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~   82 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   82 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence            345678999999999999999999998866655554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.20  E-value=0.008  Score=67.93  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~   62 (761)
                      .=++|+|+||+||||+|+.++...+.++..++...+.+...+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g   91 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG   91 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence            348899999999999999999999988888876665444333

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.13  E-value=0.013  Score=65.41  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      .+|.+|+++|++||||||++.+|+..+   +.....++.|.+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            358999999999999999999987543   456667787755

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.12  E-value=0.0093  Score=65.73  Aligned_cols=131  Identities=11%  Similarity=0.069  Sum_probs=73.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHH---HHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQ---CLTSASSALKKGKSVFLDRCNLEREQRT   94 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~---~~~~~~~~L~~g~~VIID~tn~~~~~R~   94 (761)
                      +.+.+|||+||+|   +|+.++|.+.++..+.. ..-.-+.++..-...   -...+.+.+..|+.+|+|-      +-+
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~-~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdI------d~q  299 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI-AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TPN  299 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE-CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCEEEECC------CHH
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCcccccc-ccCCCCCcccCCccCCcCcHHHHHHHHHcCCEEEEEe------CHH
Confidence            4567899999997   89999999987744432 211112222110011   2367788889999999998      333


Q ss_pred             HHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh-c-CCCccCCceEEEEcCChh
Q 004319           95 DFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK-E-LPKLSEGFSRITLCQNEN  167 (761)
Q Consensus        95 ~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~-e-~P~~~EgFd~V~vv~~~~  167 (761)
                      ....+ ...-.. .+||+.+| .+++.+| ..|....      . ++.+.++++.. + +-....-||.|++.++.+
T Consensus       300 g~~~l~~~~~~p-~~IFI~PPS~~~L~~~-~~r~~~~------s-~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~  367 (391)
T 3tsz_A          300 AVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMRLCPE------S-RKSARKLYERSHKLRKNNHHLFTTTINLNSMN  367 (391)
T ss_dssp             HHHHHHHTTCCC-EEEEEECCCHHHHHHH-HHHHCSS------C-CCCHHHHHHHHHHHHHHHGGGCSEEEECCTTC
T ss_pred             HHHHHHhCCCCC-EEEEEeCcCHHHHHHH-HhcCCCC------C-HHHHHHHHHHHHHHHHhccccCcEEEECCCcH
Confidence            33333 222223 45666654 6777665 5554311      1 22344444332 1 111235689998877654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.08  E-value=0.005  Score=69.03  Aligned_cols=47  Identities=15%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQ   66 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~   66 (761)
                      +.-++|.|+||+|||++|+.++..++  .++..++...+...+.+....
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~  111 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV  111 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence            35688999999999999999999998  678778877777666665554

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.05  E-value=0.008  Score=68.20  Aligned_cols=67  Identities=21%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC--cEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~--~VIID~   85 (761)
                      .+.-++|.|+||+|||++|+.++..++.++..++...+.....+.....+..+......+.  .++||-
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDE  305 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  305 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecc
Confidence            4456899999999999999999999987788887766655555544443333333333332  466776

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.05  E-value=0.0065  Score=65.23  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=40.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec--ccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ--DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN   87 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~--D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn   87 (761)
                      ..+++|.|+||+||||||.+++...+....+++.  ++..+......+..+..+.+.+...+.+|||...
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~  192 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence            3577999999999999999998764433233443  1111111123344445555555544488999843

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.96  E-value=0.005  Score=65.10  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCC-----CeEEE-ecccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSAR-----PWARI-CQDTI   56 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-----~~~~I-~~D~i   56 (761)
                      ....+.+|.|+|++||||||+++.|...++.     ....+ ++|.+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            3457889999999999999999999876642     23445 88876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.95  E-value=0.0078  Score=64.00  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCC-CCHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCN-LEREQRTDFVK   98 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn-~~~~~R~~~~~   98 (761)
                      +.-++|.|+||+||||+|+.+++.++.++..++...+.     .. ..+..+...+..+..++||-.. +.......++.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~  128 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-----KS-GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYP  128 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----SH-HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----ch-hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHH
Confidence            34589999999999999999999998777777765542     11 1122222334456678888754 33344444444


Q ss_pred             h
Q 004319           99 L   99 (761)
Q Consensus        99 l   99 (761)
                      .
T Consensus       129 ~  129 (338)
T 3pfi_A          129 A  129 (338)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.92  E-value=0.012  Score=60.98  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=28.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++|+|+|||||||+++.++...+..+..++...+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~  109 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDF  109 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence            8999999999999999999988766766665444

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.90  E-value=0.0056  Score=68.90  Aligned_cols=150  Identities=10%  Similarity=0.005  Sum_probs=78.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHH---HHHHHHHHHHHCCCcEEEeCCCCCHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---QCLTSASSALKKGKSVFLDRCNLEREQRT   94 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~---~~~~~~~~~L~~g~~VIID~tn~~~~~R~   94 (761)
                      ..+.+|||+||+|+|   +.++|.+.++..+...-.- -+.++..-..   .-...+.+.+..|+.+|+|-      +-+
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdI------d~q  291 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDV------TPN  291 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C----------CBCCHHHHHHHHTTTCEEEECC------CHH
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCCcccccccCCcccHHHHHHHHHCCCeEEEEe------CHH
Confidence            456789999999999   9999998877444322111 1222110001   12367788899999999998      333


Q ss_pred             HHHHh-CCCCceEEEEEEeCC-HHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--CCCccCCceEEEEcCCh--hh
Q 004319           95 DFVKL-GGPEVDVHAVVLDLP-AKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--LPKLSEGFSRITLCQNE--ND  168 (761)
Q Consensus        95 ~~~~l-~~~~~~v~vV~Ld~p-~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--~P~~~EgFd~V~vv~~~--~e  168 (761)
                      ....+ ...-.. .+||+.+| .+++.+| .+|...      +. ++.+.++++...  +-....-||.|++.++.  ..
T Consensus       292 g~~~l~~~~~~p-~~IFI~PPS~e~L~~~-~~rl~~------~s-ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a  362 (468)
T 3shw_A          292 AVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMRLCP------ES-RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGW  362 (468)
T ss_dssp             HHHHHHHTTCCC-EEEEEECSCHHHHHHH-HHHHCT------TC-CCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHH
T ss_pred             HHHHHHhcCCCC-EEEEEeCcCHHHHHHH-HhccCC------CC-HHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHH
Confidence            33333 112222 46666665 5666553 444321      11 224444444321  11224569999887765  23


Q ss_pred             HHHHHHHhhcc-CCCcccc
Q 004319          169 VQAALDTYSGL-GPLDTLP  186 (761)
Q Consensus       169 i~~~l~~~~~l-gp~diig  186 (761)
                      +.++...+..+ .....+|
T Consensus       363 ~~~L~~ii~~~~~~~~WvP  381 (468)
T 3shw_A          363 YGALKEAIQQQQNQLVWVS  381 (468)
T ss_dssp             HHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHhcCCCEEeC
Confidence            44443333222 3334444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.80  E-value=0.0059  Score=64.77  Aligned_cols=67  Identities=12%  Similarity=0.123  Sum_probs=41.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHH-HHHHHHHHHHHCCCcEEEeCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKV-QCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~-~~~~~~~~~L~~g~~VIID~t   86 (761)
                      +..++|.|+||+||||+++.++..+   +..+..++.+.+......... .........+.....++||-.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi  107 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV  107 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence            4568999999999999999999877   666777776544211000000 001222334455677889884

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.80  E-value=0.0078  Score=63.32  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=47.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC-HHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE-REQRTDFVK   98 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~-~~~R~~~~~   98 (761)
                      +..++|.|+||+||||+|+.+++.++.++..++...+.     ........+...+..+..++||-...- ......+..
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~  112 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-----KPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYP  112 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----SHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----ChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHH
Confidence            35688999999999999999999988777666654432     122222222222445667888885443 333333443


Q ss_pred             h
Q 004319           99 L   99 (761)
Q Consensus        99 l   99 (761)
                      .
T Consensus       113 ~  113 (324)
T 1hqc_A          113 A  113 (324)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.79  E-value=0.0051  Score=68.81  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEecccccC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQDTINK   58 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~D~i~~   58 (761)
                      .+.-|+|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            34578999999999999999999998 66666676655543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.78  E-value=0.0058  Score=60.81  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=29.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i   56 (761)
                      ....++|+|+||+||||+++.++..+.   ..+..++.+.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            456789999999999999999987654   44556665444

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.77  E-value=0.0068  Score=59.71  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +++++|.+||||||||++++.. +.+..++.....
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~   34 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQI   34 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence            4799999999999999999977 666667766443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.76  E-value=0.013  Score=63.58  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.-++|+|+||+||||+|+.+++.++.++..++...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~  108 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL  108 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh
Confidence            3458999999999999999999999877777766554

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=95.76  E-value=0.03  Score=59.47  Aligned_cols=104  Identities=12%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEec-----ccccCCCCCcHHHHHHHHHHHH-HCCCcEEEeCCCCCH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQ-----DTINKGKSGTKVQCLTSASSAL-KKGKSVFLDRCNLER   90 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~-----D~i~~~~~~~~~~~~~~~~~~L-~~g~~VIID~tn~~~   90 (761)
                      +.+.+|++=|.-||||||.+++|.+.+. +.+.++..     ..++ .+      .+......| ..|..+|.|.+-+..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~-~~------yl~R~~~~LP~~G~IvIfDRswYs~  156 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG-QW------YFQRYVATFPTAGEFVLFDRSWYNR  156 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT-SC------TTHHHHTTCCCTTCEEEEEECGGGG
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh-ch------HHHHHHHhcccCCeEEEEECCcchH
Confidence            4689999999999999999999999886 33333321     1111 11      113344555 789999999955443


Q ss_pred             H--HH-----------HHHHHh-------CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           91 E--QR-----------TDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        91 ~--~R-----------~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .  +|           ..+..+       ...|+.+..+||++|.++..+|+.+|...
T Consensus       157 v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d  214 (304)
T 3czq_A          157 AGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD  214 (304)
T ss_dssp             TTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence            2  11           122222       23567888999999999999999888653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.74  E-value=0.034  Score=66.03  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCe---------------------EEE-ecccc----cCCCCCcHHH------
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPW---------------------ARI-CQDTI----NKGKSGTKVQ------   66 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~---------------------~~I-~~D~i----~~~~~~~~~~------   66 (761)
                      ...+|+|+||   ||+|+.++|.+.+...+                     .++ +.+.+    .++.+..+.+      
T Consensus       530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y  606 (721)
T 2xkx_A          530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY  606 (721)
T ss_pred             CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence            4578999998   39999999998754111                     112 22111    1111111100      


Q ss_pred             --HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCH-HHHHHHHHhcccccCCCCCCChHHHHH
Q 004319           67 --CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPA-KLCISRSVKRIEHEGNLQGGKAAAVVN  142 (761)
Q Consensus        67 --~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~-e~~~~R~~~R~~~~~~~~~~v~~~vI~  142 (761)
                        -...+.+.+..|+.+|+|.      ++.....+ ...-+. .+||+.+|. +++.+ +..|...         +++-.
T Consensus       607 Gt~~~~v~~~~~~g~~~ildi------~~~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~---------~~~~~  669 (721)
T 2xkx_A          607 GTSVQSVREVAEQGKHCILDV------SANAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITE---------EQARK  669 (721)
T ss_pred             eeeHHHHHHHHHCCCcEEEeC------CHHHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCH---------HHHHH
Confidence              1245778889999999998      33433333 112222 577787664 55544 7666531         23223


Q ss_pred             HHHhhh-cCCCccCCceEEEEcCChhh
Q 004319          143 RMLQKK-ELPKLSEGFSRITLCQNEND  168 (761)
Q Consensus       143 r~~~~~-e~P~~~EgFd~V~vv~~~~e  168 (761)
                      ++.+.. .+-...+.|+.|++.++.++
T Consensus       670 rl~~a~~~e~~~~~~fd~vi~Nd~l~~  696 (721)
T 2xkx_A          670 AFDRATKLEQEFTECFSAIVEGDSFEE  696 (721)
T ss_pred             HHHHHHHHHHhccccCcEEEECcCHHH
Confidence            333221 12223456888866654333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.72  E-value=0.047  Score=62.09  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      .++.+|+|+|+||+||||++.+|+..+   +.....++.|..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            457799999999999999999998654   5567778877643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.72  E-value=0.0074  Score=63.83  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCCCCC--
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRCNLE--   89 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~tn~~--   89 (761)
                      ..|.++++.|+||+||||+++.+++.++..+..++....     . .......+.....      ..+.+|||-...-  
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~  119 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL  119 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc
Confidence            445688999999999999999999998855555554332     1 2222223333333      2345788885543  


Q ss_pred             HHHHHHHHHh
Q 004319           90 REQRTDFVKL   99 (761)
Q Consensus        90 ~~~R~~~~~l   99 (761)
                      ......+...
T Consensus       120 ~~~~~~L~~~  129 (324)
T 3u61_B          120 AESQRHLRSF  129 (324)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444455554

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.70  E-value=0.0066  Score=65.66  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .+.-++|.|+||+|||++|+.+++.++.++..++.-.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l   87 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL   87 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence            34568899999999999999999999877877765444

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.70  E-value=0.023  Score=60.07  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i   56 (761)
                      ++.+++|+|++||||||++..|+..+    |.....++.|..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            56799999999999999999987543    446677888765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.70  E-value=0.0083  Score=71.86  Aligned_cols=59  Identities=14%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKG   78 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g   78 (761)
                      |.=|+|.||||+|||.+|++++.+++.++..++...+...+.+..+..+..+.+..+..
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~  569 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA  569 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence            44588999999999999999999999777777777777777776666565555555443

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=95.67  E-value=0.11  Score=56.90  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=22.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ......|.+-|+-||||||+++.|++.+.
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34556899999999999999999998764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.55  E-value=0.016  Score=64.88  Aligned_cols=43  Identities=19%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-CCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-GKSG   62 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-~~~~   62 (761)
                      +.-|+|+|+||+||||+|+.|++.++.++..++...+.. ++.+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG   93 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence            445899999999999999999999998887777655544 4544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.54  E-value=0.02  Score=61.59  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            346689999999999999999998875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.52  E-value=0.0017  Score=66.77  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -++|.|+||+||||+|+.++..++.++..++...+
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~   80 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF   80 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence            37899999999999999999998866655554443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.44  E-value=0.015  Score=65.99  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG   62 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~   62 (761)
                      ++|+|+||+||||+|+.++...+.++..++...+.+...+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g  106 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG  106 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence            8999999999999999999998877877876665443333

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.43  E-value=0.0066  Score=59.53  Aligned_cols=33  Identities=12%  Similarity=0.074  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      ..++|+|+||+||||+|+.++..+   +..+..++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence            678999999999999999998765   344555554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.43  E-value=0.022  Score=60.93  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+..++|+|+||+||||+++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456689999999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.38  E-value=0.021  Score=61.17  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=27.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      +..++|+|+||+||||+++.++..++..+...+.
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg   84 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG   84 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec
Confidence            3568999999999999999999998755544444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.38  E-value=0.019  Score=64.07  Aligned_cols=40  Identities=35%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      .+|.+|+++|+||+||||++.+|+..+   +.....++.|..+
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            356799999999999999999988654   3456778887553

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.38  E-value=0.014  Score=57.34  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +.+++|.|+||+||||+++.+++.+.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999988764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.30  E-value=0.014  Score=60.73  Aligned_cols=39  Identities=15%  Similarity=0.445  Sum_probs=32.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK   58 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~   58 (761)
                      +.-++|.|+||+||||+|+.+++.++.++..++...+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~   88 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE   88 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence            456889999999999999999999987787777665543

>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4

Probab=95.22  E-value=0.02  Score=57.87  Aligned_cols=88  Identities=10%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             CCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc---CCHH---HHHHHHHHHHHHHHHHHHhhccCCceee
Q 004319          572 ERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD---VRNE---HLQILQTMHAVGMKWAEKFLHEDASLAF  645 (761)
Q Consensus       572 e~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d---l~~e---~l~lL~~m~~~~~~~~~~~~~~~~~~~~  645 (761)
                      ...|+..|.....+++|+|  +..+.|+|+||. ..|+.+.+   +.+.   -...-........+...+-+. +.....
T Consensus        27 ~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLmPt-~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pip-d~~lsL  102 (227)
T 2pof_A           27 NPSPCAEVKPNAGYVVLKD--LNGPLQYLLMPT-YRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVP-DRAVSL  102 (227)
T ss_dssp             CCTTSSEEETTTTEEEEEC--SSSSSCEEEEES-SCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCC-GGGEEE
T ss_pred             CCCCCceEccCCCEEEEeC--CCCCceEEEecc-ccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCC-ccceEE
Confidence            3457888888899999999  579999999998 45665543   3222   222222221111111111111 112233


Q ss_pred             eecccCCCcccceeeeee
Q 004319          646 RLGYHSAPSMRQLHLHVI  663 (761)
Q Consensus       646 ~~G~ha~pSv~HLHlHVI  663 (761)
                      -++-..+-|-+||||||-
T Consensus       103 aINS~~gRSQnQLHIHIs  120 (227)
T 2pof_A          103 AINSRTGRTQNHFHIHIS  120 (227)
T ss_dssp             EEBCGGGCSCCSCCEEEE
T ss_pred             EecCCCCccccceeeehh
Confidence            444444569999999974

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.18  E-value=0.034  Score=59.29  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=27.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEEe
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARIC   52 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~------~~~~~~I~   52 (761)
                      ..+..++|+|+||+||||+++.++..+      +..+..++
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            446689999999999999999998876      54455555

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.09  E-value=0.062  Score=57.55  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEe
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA----RPWARIC   52 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~   52 (761)
                      .++|+|+||+||||+++.++..+.    ..+..++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            799999999999999999998873    3344555

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.08  E-value=0.16  Score=56.60  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~   57 (761)
                      .+|.+|+++|++|+||||++.+|+..+    +.....++.|..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            457899999999999999999987543    6667788888654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.08  E-value=0.023  Score=60.63  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=21.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+. ++++|++|+||||+++.++..+
T Consensus        36 ~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           36 LPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            345 8999999999999999999853

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=95.03  E-value=0.095  Score=56.38  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...|.+-|+-||||||+++.|++.+.
T Consensus         4 ~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45899999999999999999987764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.01  E-value=0.048  Score=57.70  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      +.+++++|++|+||||++..|+..+   +.....++.|..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            7889999999999999999988654   456677777754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.01  E-value=0.0094  Score=55.68  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCC-CHHHHHHHHHh
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNL-EREQRTDFVKL   99 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~-~~~~R~~~~~l   99 (761)
                      -|+|.|+||+|||++|+.+..... ++..++...+....       ...... ...+..++||.... .......+...
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~-~a~~~~l~lDei~~l~~~~q~~Ll~~   98 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ-KAEGGVLYVGDIAQYSRNIQTGITFI   98 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH-HTTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH-hCCCCeEEEeChHHCCHHHHHHHHHH
Confidence            378899999999999999987665 56555543332111       111111 23456788887544 33333444443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.93  E-value=0.015  Score=65.15  Aligned_cols=76  Identities=22%  Similarity=0.315  Sum_probs=43.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHH--CCCcEEEeCCCCCH-HHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALK--KGKSVFLDRCNLER-EQRTDFV   97 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--~g~~VIID~tn~~~-~~R~~~~   97 (761)
                      .-++|+|+||+||||+|+.+++.++..+..++.....   .......+..+.....  .+..++||-...-. .....++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL  127 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFL  127 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHH
Confidence            4589999999999999999999988666666542211   0111222233332222  34557888854433 3334444


Q ss_pred             Hh
Q 004319           98 KL   99 (761)
Q Consensus        98 ~l   99 (761)
                      ..
T Consensus       128 ~~  129 (447)
T 3pvs_A          128 PH  129 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=94.90  E-value=0.059  Score=58.45  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             cCcEEEEecCCCCCC------------c-----------eEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhc
Q 004319          582 SDDVVVLNDLYPKAQ------------K-----------HILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLH  638 (761)
Q Consensus       582 dd~~vai~D~~Pka~------------~-----------H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~  638 (761)
                      +-++++|..+||.-.            +           +++|.+. +|..++.+|+.+++..+..+..   +..++...
T Consensus        86 ~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp-~H~~~l~~ls~~e~~~vi~~~~---~~~~~L~~  161 (351)
T 1z84_A           86 NWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESP-VHSIQLSDIDPVGIGDILIAYK---KRINQIAQ  161 (351)
T ss_dssp             SCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCS-SSSCCGGGSCHHHHHHHHHHHH---HHHHHHTT
T ss_pred             CceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCC-CCCCCcHHCCHHHHHHHHHHHH---HHHHHHhc
Confidence            347899999999982            2           6677776 7999999999988665444332   22222221


Q ss_pred             cC----CceeeeecccCCCcccceeeeeecCCcccccccc
Q 004319          639 ED----ASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKN  674 (761)
Q Consensus       639 ~~----~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~  674 (761)
                      ..    ...+-|.|..++-|+.|.|.||+..+|..+....
T Consensus       162 ~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a~~~~p~~~~~  201 (351)
T 1z84_A          162 HDSINYIQVFKNQGASAGASMSHSHSQMMALPVVPPTVSS  201 (351)
T ss_dssp             CTTCCEEEEEEEESGGGTCCCSSCEEEEEEESSCCHHHHH
T ss_pred             ccCCCEEEEEEEcCcccCCCCcCccceeEecCcCChHHHH
Confidence            11    1346788888888999999999999998765543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.87  E-value=0.02  Score=60.97  Aligned_cols=40  Identities=23%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      .++.+|+|+|++||||||++..|+..+   +.....++.|..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            467899999999999999999988654   3456667777653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.84  E-value=0.017  Score=57.81  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ...|+|+|++||||||+|..|++...   ..|+.|..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~---~iIsdDs~   67 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH---RLIADDRV   67 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC---EEEESSEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC---eEEecchh
Confidence            35789999999999999999998754   56777655

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.79  E-value=0.015  Score=64.87  Aligned_cols=67  Identities=12%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc-----CCCeEEEecccccCCCCCcHHH-HHHHHHHHHH-CCCcEEEeCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS-----ARPWARICQDTINKGKSGTKVQ-CLTSASSALK-KGKSVFLDRC   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~-----~~~~~~I~~D~i~~~~~~~~~~-~~~~~~~~L~-~g~~VIID~t   86 (761)
                      +.-++|.|+||+||||+++.++...     +..+..++...+.......... ........+. ....+|||-.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi  203 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV  203 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence            4568999999999999999998766     5556666654431100000000 0112233444 5667899984

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.76  E-value=0.021  Score=56.19  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D   54 (761)
                      .-.+++|+|+||||||||+..++...+....+++.+
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~   54 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE   54 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence            346999999999999999999987444445555543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.70  E-value=0.17  Score=54.05  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=27.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC   52 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~   52 (761)
                      +..++|.|+||+|||++|+.+++.++.  ++..++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            357999999999999999999998873  454444

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.66  E-value=0.019  Score=59.92  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=51.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCCCCCcHHHHHHHHHHH--H--HCCCcEEEeCCC-CCHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSA--L--KKGKSVFLDRCN-LEREQ   92 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~~~~~~~~~~~~~~~~--L--~~g~~VIID~tn-~~~~~   92 (761)
                      +++.|+||+||||+|+.+++.+.     ..+..++........  ............  +  ...+.+|||... +....
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~  118 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA  118 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT--TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH--HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH
Confidence            89999999999999999998751     123444432221100  111111111111  1  123457888743 44455


Q ss_pred             HHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           93 RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        93 R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      ...+..+ ......+.+|...-..+.+...+..|
T Consensus       119 ~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr  152 (319)
T 2chq_A          119 QAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR  152 (319)
T ss_dssp             HHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred             HHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence            5556666 55444455555443333333333334

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.65  E-value=0.017  Score=56.44  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+.|+|++||||||+.+.++..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.54  E-value=0.079  Score=60.00  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i   56 (761)
                      .++.+++|+|++||||||+++.|+..+.   ..+.+...|.+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF  332 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence            4678999999999999999999886542   23333345544

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.54  E-value=0.028  Score=60.42  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ..++.++.|+|++||||||+++.|+..+   +........|..
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            3568999999999999999999987653   234445556654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.49  E-value=0.028  Score=60.06  Aligned_cols=22  Identities=27%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +++.|+||+||||+++.++..+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.44  E-value=0.045  Score=57.20  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +++.|+||+||||+|+.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999874

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.40  E-value=0.04  Score=57.43  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +++.|+||+||||+|+.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999998874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=94.38  E-value=0.03  Score=38.16  Aligned_cols=29  Identities=17%  Similarity=0.259  Sum_probs=25.8

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      |..|..|++.|.+...|+.|+.+|...-|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            67899999999999999999999876544

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=94.37  E-value=0.033  Score=36.06  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=24.4

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRAP  740 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~  740 (761)
                      |..|..|++.|.+...|+.|+..|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            678999999999999999999988753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.36  E-value=0.022  Score=56.53  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-.++.|+|++|||||||++.++..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3469999999999999999999874

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=94.34  E-value=0.027  Score=35.87  Aligned_cols=26  Identities=15%  Similarity=0.358  Sum_probs=22.8

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+.+|..
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46899999999999999999998764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=94.33  E-value=0.023  Score=38.81  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+..|....|
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999887554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=94.32  E-value=0.018  Score=36.96  Aligned_cols=26  Identities=12%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|..|..|++.|.+...|+.|+.+|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            37899999999999999999998763

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.27  E-value=0.19  Score=55.94  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      .+.+|+++|++||||||++..|+..+   +.....++.|..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            57889999999999999999988654   345666777654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.22  E-value=0.12  Score=55.83  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~   53 (761)
                      -.+++|.|.||+|||||+..++..   .+.+..+++.
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            369999999999999999998765   3444555654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.19  E-value=0.12  Score=55.41  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+.+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999998876

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.16  E-value=0.081  Score=56.48  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+..+++.|+||+||||+++.+++.+.
T Consensus        37 ~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           37 IHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345789999999999999999998765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.14  E-value=0.096  Score=55.42  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++|.|+||+||||+++.+++.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998774

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.12  E-value=0.17  Score=54.87  Aligned_cols=125  Identities=15%  Similarity=0.088  Sum_probs=65.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC--CeEEEe-cccccCC-C------CC-cH--------HHHHHHHHHHHHCCCcE
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR--PWARIC-QDTINKG-K------SG-TK--------VQCLTSASSALKKGKSV   81 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~--~~~~I~-~D~i~~~-~------~~-~~--------~~~~~~~~~~L~~g~~V   81 (761)
                      .+++|+|++||||||+.+.|...+..  ....++ .+.+... .      .. ..        ......+...+.....+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~  255 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR  255 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence            48999999999999999999876542  233333 1222110 0      00 00        01224555556655555


Q ss_pred             EEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           82 FLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      ++.+..........+..+ ..+...+..+.- .+......|+........ .....+.+.+.++...
T Consensus       256 ~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~-~~~~~~~~Rl~~l~~~~~-~~~~~~~~~i~~~l~~  320 (361)
T 2gza_A          256 ILLAELRGGEAYDFINVAASGHGGSITSCHA-GSCELTFERLALMVLQNR-QGRQLPYEIIRRLLYL  320 (361)
T ss_dssp             EEESCCCSTHHHHHHHHHHTTCCSCEEEEEC-SSHHHHHHHHHHHHTTST-TGGGSCHHHHHHHHHH
T ss_pred             EEEcCchHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHHHHhccc-cccCCCHHHHHHHHHH
Confidence            544433333333333334 444433444443 457778888877654321 0014566677666554

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=94.11  E-value=0.095  Score=56.30  Aligned_cols=133  Identities=15%  Similarity=0.072  Sum_probs=72.5

Q ss_pred             EEEEcCCCCcHHH-------HHHHHHHHcCCC--eEEEecccccCCC-----------------CCcHHHHH---HHHHH
Q 004319           23 VIMVGAPGSGKST-------FCEHVMRSSARP--WARICQDTINKGK-----------------SGTKVQCL---TSASS   73 (761)
Q Consensus        23 IvLvG~PGSGKST-------fA~~L~~~~~~~--~~~I~~D~i~~~~-----------------~~~~~~~~---~~~~~   73 (761)
                      |+|+||.+.|==+       +-..+.++++..  ++++..|.-..+.                 .....++.   +.+..
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~  224 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFE  224 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCCHHHHHHHHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHH
Confidence            8999999998764       445566777744  4444444331110                 11222332   34444


Q ss_pred             HHHCCCcEEEeCCCCCHHHHH-HHHHhCCCCceEEEEEEe-CCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh--hc
Q 004319           74 ALKKGKSVFLDRCNLEREQRT-DFVKLGGPEVDVHAVVLD-LPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK--KE  149 (761)
Q Consensus        74 ~L~~g~~VIID~tn~~~~~R~-~~~~l~~~~~~v~vV~Ld-~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~--~e  149 (761)
                      ....|+.||+|--      .+ ....++.......+||+. .+.+++.+|+..|+..        .+..+.+.+..  .+
T Consensus       225 v~~~Gk~vILDID------vQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~--------~~~rl~~al~~ae~E  290 (337)
T 4dey_A          225 LARTLQLVVLDAD------TINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKS--------QAKHLNVQMVAADKL  290 (337)
T ss_dssp             HTTTCCEEEEEET------TCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHH--------HHTTHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEeC------cHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCch--------HHHHHHHHHHHHHHH
Confidence            5558899999982      22 222332222234455655 4579999999999752        12233333211  11


Q ss_pred             CCCccCCceEEEEcCChhhH
Q 004319          150 LPKLSEGFSRITLCQNENDV  169 (761)
Q Consensus       150 ~P~~~EgFd~V~vv~~~~ei  169 (761)
                      .-.....||.|++.++.+++
T Consensus       291 ~~~~~~~FDyvIVNDdLe~A  310 (337)
T 4dey_A          291 AQCPPELFDVILDENQLEDA  310 (337)
T ss_dssp             HHSCGGGCSEEECCSSHHHH
T ss_pred             HhhCcccCCEEEECCCHHHH
Confidence            11224569998887765544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.05  E-value=0.036  Score=63.54  Aligned_cols=37  Identities=27%  Similarity=0.560  Sum_probs=30.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      ....++|+|+||+||||+|+.++..++..+..++.+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            3558999999999999999999999886666665443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.00  E-value=0.14  Score=55.54  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=28.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      .-.++.|.|+||||||||+..++...   +....+++...
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34699999999999999999988653   34455666543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=93.97  E-value=0.037  Score=35.67  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+.+|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            68999999999999999999998864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.93  E-value=0.033  Score=59.01  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      -++|.|+||+|||++|+.++..++..+..++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~   78 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ   78 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence            4889999999999999999999886665554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.84  E-value=0.042  Score=52.68  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+-.++.|+|+.|||||||.+.++..++
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3457899999999999999999988753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.84  E-value=0.033  Score=55.08  Aligned_cols=25  Identities=28%  Similarity=0.720  Sum_probs=21.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      +..+++|+|+||||||||++.++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998854

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.84  E-value=0.032  Score=59.28  Aligned_cols=38  Identities=29%  Similarity=0.322  Sum_probs=28.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i   56 (761)
                      ++.++.|+|++||||||+++.|+..+.   ........|..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            578999999999999999999986542   33444555544

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.83  E-value=0.046  Score=56.99  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i   56 (761)
                      ..++|+|+||+||||+|+.++..+.   .++..++...+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            4799999999999999999998763   33555655443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.81  E-value=0.036  Score=58.78  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.7

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.++.|+|++||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999988653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.74  E-value=0.047  Score=59.42  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      .++.++.|+|++||||||+++.|+..+   +..+.....|.
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            467899999999999999999988654   23344444454

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.73  E-value=0.036  Score=53.92  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=26.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      ..++.++|++||||||++.+|...+   +.....+..|
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~   41 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   41 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence            3478999999999999999998764   2344455543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.66  E-value=0.075  Score=64.19  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEecccccC--CCCCcHHHHHHHHHHHHHCC-C--cEEEeC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTINK--GKSGTKVQCLTSASSALKKG-K--SVFLDR   85 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~~--~~~~~~~~~~~~~~~~L~~g-~--~VIID~   85 (761)
                      .-++|+|+||+||||+++.++...          +..+..++...+..  ...+.....+..+...+... .  .++||-
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDE  271 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE  271 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            347899999999999999999876          44455555544432  22334444444444444432 2  356687


Q ss_pred             CCC
Q 004319           86 CNL   88 (761)
Q Consensus        86 tn~   88 (761)
                      ...
T Consensus       272 i~~  274 (854)
T 1qvr_A          272 LHT  274 (854)
T ss_dssp             C--
T ss_pred             HHH
Confidence            443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.65  E-value=0.045  Score=53.64  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -++++|.+|+||||+|..|.+. +  +..++.|.+
T Consensus        18 gvli~G~SGaGKStlal~L~~r-G--~~lvaDD~v   49 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR-G--HQLVCDDVI   49 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc-C--CeEecCCEE
Confidence            5899999999999999999874 4  666777665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.63  E-value=0.034  Score=36.02  Aligned_cols=27  Identities=11%  Similarity=0.310  Sum_probs=24.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+...|+.|+..|..
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            478999999999999999999998864

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.62  E-value=0.044  Score=62.34  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      .+..++|+|+||+||||+|+.+++.++..+..++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~  110 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA  110 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence            34689999999999999999999999855555554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.61  E-value=0.029  Score=56.45  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..-+++.||||+||||+|..+++.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999998865

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.60  E-value=0.038  Score=37.55  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.8

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPF  741 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~  741 (761)
                      .|..|..|++.|.....|+.|+..|...-
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            47899999999999999999999987643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.52  E-value=0.072  Score=57.55  Aligned_cols=38  Identities=29%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      .++..+|+|+|.||+||||++.+|+..+   +.....++.|
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            4567789999999999999999998664   4556666665

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.48  E-value=0.042  Score=53.56  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+++++|++||||||++++|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            3578999999999999999998753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.44  E-value=0.035  Score=38.41  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=25.9

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPF  741 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~  741 (761)
                      .|..|..|++.|.....|+.|+.+|...-
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            47899999999999999999999987643

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.42  E-value=0.04  Score=35.32  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=23.5

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            67899999999999999999988754

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.40  E-value=0.025  Score=36.52  Aligned_cols=25  Identities=28%  Similarity=0.716  Sum_probs=22.8

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhc
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSC  737 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~  737 (761)
                      .|..|..|++.|.+...|+.|+.+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3789999999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.39  E-value=0.047  Score=53.00  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ....|+|+|++|||||||.+.+....
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34678999999999999999998653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.36  E-value=0.076  Score=53.90  Aligned_cols=37  Identities=32%  Similarity=0.427  Sum_probs=29.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc--CCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS--ARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~--~~~~~~I~~D~   55 (761)
                      +..+++++|.+|+||||++..|+..+  +.....++.|.
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            56799999999999999999998654  45566777663

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.35  E-value=0.037  Score=35.61  Aligned_cols=26  Identities=12%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|..|..|++.|.+...|+.|+..|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            37889999999999999999998875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.31  E-value=0.041  Score=55.01  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-.+++|+|+||||||||++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3468999999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.30  E-value=0.045  Score=59.99  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=25.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -+...+++|+|+|||||||+++.|+..++
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34567999999999999999999998766

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=93.28  E-value=0.034  Score=35.94  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=23.7

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+.+|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            67899999999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.25  E-value=0.13  Score=55.93  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ..+++|.|+||+||||||..++...   +....+++.+.
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            4588999999999999999987653   45567777654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=93.15  E-value=0.29  Score=52.10  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=24.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..-+..+++.|+||+||||+|+.+++.+.
T Consensus        21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           21 GRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            34466899999999999999999998865

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.15  E-value=0.069  Score=54.62  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDT   55 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~   55 (761)
                      .-++|.|+||+|||++|+.+.....   .++..++...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            4578999999999999999998765   4576676443

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=93.14  E-value=0.065  Score=56.35  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC-CCeEEEecccccCCCCCcHHH-----HHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA-RPWARICQDTINKGKSGTKVQ-----CLTSASSALKKGKSVFLDRCNLERE   91 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~-~~~~~I~~D~i~~~~~~~~~~-----~~~~~~~~L~~g~~VIID~tn~~~~   91 (761)
                      ..+.||++-|.-||||.+.+++|.+.++ +.+.++....      .+..+     +..-....-..|+.+|.|++-+...
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~------Pt~eE~~~~ylwR~~~~lP~~G~I~IFdRSwY~~v  146 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA------PTDEEKSHDFLWRIEKQVPAAGMVGVFDRSQYEDV  146 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS------CCHHHHTSCTTHHHHTTCCCTTCEEEEESCGGGGG
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC------CChhhhcCCHHHHHHHhCCCCCeEEEEeCchhhhH
Confidence            4689999999999999999999999887 3333332210      01111     1122222236788899999655541


Q ss_pred             -------------HHHHHH------Hh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           92 -------------QRTDFV------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        92 -------------~R~~~~------~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                   ....+.      .. ...|+.+.-++|++|.++..+|+.+|...+
T Consensus       147 lverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP  204 (289)
T 3rhf_A          147 LIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP  204 (289)
T ss_dssp             THHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence                         111122      22 467888888999999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=93.13  E-value=0.048  Score=59.22  Aligned_cols=28  Identities=43%  Similarity=0.638  Sum_probs=24.2

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +....|+|+|+|||||||+++.|+..++
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4445689999999999999999998876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.07  E-value=0.06  Score=55.81  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+-.+++|+|++||||||+.+.+...+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            345699999999999999999987643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.06  E-value=0.051  Score=54.35  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=21.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ...+++|+|+||||||||+.+++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999988654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.05  E-value=0.075  Score=56.83  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      .++.+|+++|++|+||||++..|+..+   +.....++.|..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            467899999999999999999987543   345666777754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.03  E-value=0.046  Score=57.08  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-.+++|+|+||||||||++.++..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3469999999999999999998754

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.99  E-value=0.075  Score=38.90  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+.+|..|++.|.+...|+.|+..|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP   40 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=92.97  E-value=0.049  Score=38.32  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            478999999999999999999999886544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.94  E-value=0.059  Score=60.52  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .-++|+|+||+||||+|+.++..+
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999885

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=92.91  E-value=0.21  Score=54.25  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ...+++|.|+||+||||||..++...   +....+++.+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            34689999999999999999987543   44566777643

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.86  E-value=0.092  Score=38.26  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP   40 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.85  E-value=0.088  Score=38.38  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSCSCC
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCCCCC
Confidence            478999999999999999999999876544

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=92.85  E-value=0.19  Score=54.17  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             ccEEEEEEcCCCCcHHHHH-HHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFC-EHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA-~~L~~~~~   45 (761)
                      ....|++-|+-||||||++ +.|.+.++
T Consensus        11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A           11 GVLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            4568999999999999999 99988765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=92.75  E-value=0.051  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++.|+|++||||||+.+.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58899999999999999988654

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=92.75  E-value=0.053  Score=61.49  Aligned_cols=108  Identities=9%  Similarity=-0.000  Sum_probs=65.2

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC-CeEEEec----ccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCH-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR-PWARICQ----DTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER-   90 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~I~~----D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~-   90 (761)
                      .+.+.||++-|.-||||+|.+++|.+.++. .+.++..    +.-...++     +.......-..|..+|.|..-+.. 
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~y-----l~R~~~~lP~~G~IvIfdRSwYs~~  114 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPP-----QWRFWRRLPPKGRTGIFFGNWYSQM  114 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCT-----THHHHHHCCCTTCEEEEESCHHHHH
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCCh-----hhhHHHhCCCCCeEEEEeCchhhHH
Confidence            467899999999999999999999998873 2322221    11111111     112222233578889999854333 


Q ss_pred             -----------HHHHHHH-------Hh-CCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           91 -----------EQRTDFV-------KL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        91 -----------~~R~~~~-------~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                                 .....++       .. ...|+.+..+||++|.++..+|+.+|...+
T Consensus       115 ~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A          115 LYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence                       2111111       11 456888999999999999999999997643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.75  E-value=0.036  Score=53.88  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .++.|+|++||||||+++.|...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4789999999999999999987643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.75  E-value=0.047  Score=55.63  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.++.-.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34589999999999999999887543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.73  E-value=0.083  Score=38.51  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTTSSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCCCCC
Confidence            478999999999999999999999876544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.71  E-value=0.074  Score=36.36  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=24.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .+..|..|++.|.+...|+.|+.+|..
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            478999999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=92.71  E-value=0.62  Score=51.86  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=26.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~   53 (761)
                      -.+++|.|.||+|||||+..++..    .+.+..+++.
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            469999999999999999998754    2445666664

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.70  E-value=0.085  Score=38.52  Aligned_cols=30  Identities=17%  Similarity=0.348  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP   40 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTTTSSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.70  E-value=0.1  Score=37.92  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP   40 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGGGSSSCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            479999999999999999999999876544

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.69  E-value=0.089  Score=37.39  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876433

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.66  E-value=0.089  Score=38.34  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTGERP   40 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSCCCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.63  E-value=0.057  Score=55.32  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            789999999999999999987543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.62  E-value=0.092  Score=37.72  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            478999999999999999999999876544

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.59  E-value=0.1  Score=38.09  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTGERS   40 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876433

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.52  E-value=0.039  Score=35.45  Aligned_cols=26  Identities=23%  Similarity=0.517  Sum_probs=23.6

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            67899999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=92.52  E-value=0.14  Score=60.90  Aligned_cols=63  Identities=22%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      .++|+|+||+|||++|+.+++.+   +.++..++...+.+............+.  ...+..+++|-.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~--~~~~~vl~lDEi  588 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR--RKPYSVVLLDAI  588 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH--HCSSSEEEEECG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH--hCCCeEEEEeCc
Confidence            68999999999999999999886   3567788876665443333111112211  123445677763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.50  E-value=0.06  Score=55.78  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.+++|+|+||||||||+..++..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            358999999999999999998854

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=92.46  E-value=0.072  Score=53.06  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=21.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ++.+++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999987544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.46  E-value=0.054  Score=54.77  Aligned_cols=23  Identities=39%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.|+|++||||||+.+.++.-
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58899999999999999988754

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.45  E-value=0.084  Score=38.62  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTTTTSCCS
T ss_pred             cccCCCCCCcccCcHHHHHHHHHhcCCCCC
Confidence            489999999999999999999998876433

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=92.43  E-value=0.26  Score=51.70  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      .+++|.|++|+||||+++.+.+..+..+.+++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            38999999999999999999988765566666543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.41  E-value=0.11  Score=37.79  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP   40 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTCCCS
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.41  E-value=0.076  Score=37.74  Aligned_cols=30  Identities=27%  Similarity=0.415  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876544

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.41  E-value=0.45  Score=52.84  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~   53 (761)
                      -.+++|.|.||+|||||+..++...    +.+..+++.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            4699999999999999999987542    345666664

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=92.38  E-value=0.098  Score=38.18  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP   40 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHHHSSCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            479999999999999999999999876544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.37  E-value=0.11  Score=37.86  Aligned_cols=30  Identities=20%  Similarity=0.425  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP   40 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTTTTTCSC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            478999999999999999999999876544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=92.37  E-value=0.095  Score=36.10  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|.+|..|++.|.+...|+.|+..+..
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            489999999999999999999998764

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.37  E-value=0.11  Score=37.92  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.....|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP   40 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTTTCCSCC
T ss_pred             CCeECCcCChhhCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.36  E-value=0.057  Score=36.93  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+...|+.|+.+|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            488999999999999999999998864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.35  E-value=0.064  Score=36.82  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=24.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+...|+.|+.+|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            488999999999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.34  E-value=0.066  Score=56.95  Aligned_cols=26  Identities=27%  Similarity=0.617  Sum_probs=22.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++|||||||++.|..-+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            44689999999999999999998765

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=92.32  E-value=0.068  Score=55.94  Aligned_cols=46  Identities=4%  Similarity=0.058  Sum_probs=36.7

Q ss_pred             CCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHHHH
Q 004319          260 ENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEE  306 (761)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~  306 (761)
                      .+-++.++. .....++++|++||+|||+||+|.+++|++..+.+.+
T Consensus       197 ~~rir~vL~-iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~  242 (277)
T 3sig_A          197 RGRAAKVLA-AARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLD  242 (277)
T ss_dssp             HHHHHHHHH-HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHST
T ss_pred             HHHHHHHHH-HHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhh
Confidence            334444444 4445789999999999999999999999998888874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.30  E-value=0.13  Score=50.57  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=26.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D   54 (761)
                      ....|+++|.+|+||||+..+|...+.  .....+..|
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d   66 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD   66 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence            456889999999999999999987753  123444443

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.30  E-value=0.091  Score=37.47  Aligned_cols=30  Identities=23%  Similarity=0.415  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.++...-|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            488999999999999999999999876543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.30  E-value=0.071  Score=37.85  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+..|...-|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=92.30  E-value=0.16  Score=60.38  Aligned_cols=70  Identities=14%  Similarity=0.201  Sum_probs=40.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc----------CCCeEEEeccccc--CCCCCcHHHHHHHHHHHHHC--CCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS----------ARPWARICQDTIN--KGKSGTKVQCLTSASSALKK--GKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~----------~~~~~~I~~D~i~--~~~~~~~~~~~~~~~~~L~~--g~~VIID   84 (761)
                      .+.-++|+|+||+||||+++.++..+          +..+..++...+.  ....+.....++.+...+..  +..++||
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID  285 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID  285 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence            34457899999999999999999875          2112122222221  12334455555555555544  3457788


Q ss_pred             CCCC
Q 004319           85 RCNL   88 (761)
Q Consensus        85 ~tn~   88 (761)
                      ....
T Consensus       286 Ei~~  289 (758)
T 1r6b_X          286 EIHT  289 (758)
T ss_dssp             TTTT
T ss_pred             chHH
Confidence            7553

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=92.29  E-value=0.11  Score=37.76  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP   40 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGGGSSSSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999876544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.29  E-value=0.11  Score=37.92  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGGTSCCCC
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhhcCCCCC
Confidence            478999999999999999999999886544

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=92.27  E-value=0.1  Score=53.60  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      .+|.|+|.+||||||+|+.|.+.++  +.++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g--~~~~~   31 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--CeEEe
Confidence            4789999999999999999988888  55554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.26  E-value=0.099  Score=37.69  Aligned_cols=30  Identities=17%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+..|..|++.|.+...|+.|+.+|...-|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQTHSDKS   38 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHHHTCTTC
T ss_pred             CCEECCCCCCeeCChHHHHHHHHhhCCCCC
Confidence            478999999999999999999999876544

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.25  E-value=0.095  Score=38.27  Aligned_cols=30  Identities=17%  Similarity=0.391  Sum_probs=26.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHTSSCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876433

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=92.23  E-value=0.079  Score=37.75  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            478999999999999999999999876544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=92.22  E-value=0.095  Score=33.98  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             CcccccCCCCCCChHHHHHH-HhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSH-ISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~H-l~~~~~  739 (761)
                      |..|..|++.|.+...|+.| ...|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            68999999999999999999 567654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.20  E-value=0.11  Score=37.84  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRIHTGENP   40 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTTTSCC
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=92.18  E-value=0.08  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+++++|+|||||||++.+++..+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            488999999999999997776553

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=92.17  E-value=0.077  Score=37.73  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            478999999999999999999999876544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.17  E-value=0.11  Score=37.52  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=26.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+..|..|++.|.....|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            478999999999999999999999876443

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.15  E-value=0.11  Score=37.94  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+..|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP   40 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGGSCCSCC
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876433

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.14  E-value=0.1  Score=37.88  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred             CCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence            489999999999999999999999876543

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.13  E-value=0.11  Score=37.82  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP   40 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            478999999999999999999999876544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=91.36  E-value=0.027  Score=35.73  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             CcccccCCCCCCChHHHHHHHhhc
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSC  737 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~  737 (761)
                      |..|..|++.|.+...|+.|+.+|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            678999999999999999999876

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.08  E-value=0.077  Score=38.78  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSCCCC
T ss_pred             CCeECCcCCcccCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.07  E-value=0.065  Score=54.68  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.++.|+|++||||||+.+.++.-
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999998754

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.03  E-value=0.071  Score=36.58  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=24.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+...|+.|+.+|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            478999999999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=92.02  E-value=0.38  Score=50.97  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=26.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      .-.+++|.|.||+|||||+..++...   +.+..+++.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            34699999999999999999987543   234455553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=91.25  E-value=0.028  Score=36.49  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=23.4

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            67899999999999999999988754

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.99  E-value=0.12  Score=37.67  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|++|+..|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP   40 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             CCcCCCccChhhCChHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.98  E-value=0.066  Score=36.75  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+...|+.|+..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            478999999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=91.97  E-value=0.066  Score=56.04  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            589999999999999999987543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=91.96  E-value=0.067  Score=55.66  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.|+|++||||||+.+.++.-
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            58999999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.96  E-value=0.062  Score=53.81  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.|+|++||||||+.+.++..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998753

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.95  E-value=0.12  Score=37.64  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP   40 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHHCCSSSC
T ss_pred             CCeECCCCCCccCchHHHHHHHHhcCCCCC
Confidence            489999999999999999999999876443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=91.93  E-value=0.5  Score=49.80  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=23.4

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.+-.|.++|.||+|||||.++|...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4456678999999999999999999754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=91.92  E-value=0.15  Score=54.81  Aligned_cols=38  Identities=29%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      ..+..++.|+|+|||||||+.+.|...+   +....++..|
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d   92 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   92 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence            3456799999999999999999987543   2334444444

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.86  E-value=0.089  Score=38.26  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|.+|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP   40 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGGGSCCCS
T ss_pred             CCeECCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999986544

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.85  E-value=0.084  Score=38.43  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p   40 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGTSSCCS
T ss_pred             cCEECCCCChhhCChHHHHHHHHhcCCCCC
Confidence            488999999999999999999999876544

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.84  E-value=0.081  Score=38.52  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTSCSSSS
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876544

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.84  E-value=0.076  Score=38.67  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|.+|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQATHSGEKP   40 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHHHCCCSC
T ss_pred             CCeeccccCChhcCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999886544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.80  E-value=0.12  Score=37.65  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKT   40 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGGGGGSCCC
T ss_pred             CCeeCcccCchhCCHHHHHHHHHhcCCCCC
Confidence            489999999999999999999999876544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=91.78  E-value=0.085  Score=54.21  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.|+|++||||||+.+.++.-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999998763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=91.77  E-value=0.085  Score=53.91  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      +-.++.|+|++||||||+.+.++.-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999998754

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.77  E-value=0.13  Score=37.47  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP   40 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTTCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.77  E-value=0.086  Score=38.35  Aligned_cols=30  Identities=20%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP   40 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCCCCC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=91.75  E-value=0.072  Score=55.19  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.++.-.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33589999999999999999987543

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.73  E-value=0.095  Score=37.94  Aligned_cols=30  Identities=17%  Similarity=0.142  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             cCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            488999999999999999999999876444

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.71  E-value=0.086  Score=38.43  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|.+|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP   40 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999876544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=90.99  E-value=0.032  Score=36.30  Aligned_cols=26  Identities=15%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.+...|+.|+.+|..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            68999999999999999999988754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=91.70  E-value=0.11  Score=49.87  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +-+.+|+|++||||||+.++|.-.++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34899999999999999999987654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.69  E-value=0.095  Score=38.34  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=26.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP   40 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999998876443

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.65  E-value=0.099  Score=38.09  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSSCCC
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHHhcCCCC
Confidence            478999999999999999999999886544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.64  E-value=0.077  Score=54.18  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999987543

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.62  E-value=0.099  Score=38.10  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence            478999999999999999999999876543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=91.61  E-value=0.1  Score=62.10  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -++|+|+||+||||+|+.+++.+
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999886

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=91.61  E-value=0.5  Score=49.99  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC------CCeEEEecccccCCCCCcHHHHHHHHHHHHH------CCCcEEEeCC-
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA------RPWARICQDTINKGKSGTKVQCLTSASSALK------KGKSVFLDRC-   86 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~------~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~------~g~~VIID~t-   86 (761)
                      .-.+++.|+||+||||+|+.+++..+      ..+..++.+    +.....+...+ +.+.+.      ..+.+|||.. 
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~----~~~~~id~ir~-li~~~~~~p~~~~~kvviIdead   92 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE----GENIGIDDIRT-IKDFLNYSPELYTRKYVIVHDCE   92 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS----SSCBCHHHHHH-HHHHHTSCCSSSSSEEEEETTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC----cCCCCHHHHHH-HHHHHhhccccCCceEEEeccHH
Confidence            55889999999999999999988631      234444432    11122222222 223332      2245788773 


Q ss_pred             CCCHHHHHHHHHh-CCCCceEEEEEEeCC
Q 004319           87 NLEREQRTDFVKL-GGPEVDVHAVVLDLP  114 (761)
Q Consensus        87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p  114 (761)
                      .++......+++. .+..-...+|.+...
T Consensus        93 ~lt~~a~naLLk~LEep~~~t~fIl~t~~  121 (305)
T 2gno_A           93 RMTQQAANAFLKALEEPPEYAVIVLNTRR  121 (305)
T ss_dssp             GBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred             HhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence            3455555667766 555444555555433

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=91.60  E-value=0.078  Score=54.73  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999987543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=91.59  E-value=0.078  Score=54.45  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.++.-+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999987654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=91.57  E-value=0.14  Score=33.78  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             Ccccc--cCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCH--RCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~--~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|.  .|++.|.+...|+.|+.+|..
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            67897  999999999999999998865

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=91.57  E-value=0.18  Score=49.71  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=26.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D   54 (761)
                      ....|+|+|.+|+||||+..++.....  .....+..|
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d   74 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD   74 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            456788889999999999999987643  223445444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.53  E-value=0.093  Score=38.23  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTTTSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=91.52  E-value=0.093  Score=54.54  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.++.|+|++||||||+.+.++.-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999998764

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.51  E-value=0.097  Score=38.15  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTTSSCCS
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876544

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.50  E-value=0.11  Score=52.05  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=26.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~D   54 (761)
                      .-.++++.|.||+||||||.+++..    .+....+++.+
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            3469999999999999999987643    24445555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.48  E-value=0.097  Score=38.21  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTSCSCC
T ss_pred             CCeECCcCCCccCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.45  E-value=0.082  Score=54.94  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=21.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.++.-.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            34589999999999999999987543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.44  E-value=0.095  Score=38.11  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSSCCS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999876544

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.43  E-value=0.087  Score=38.49  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRSHTGEKP   40 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            488999999999999999999999876443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.43  E-value=0.093  Score=38.16  Aligned_cols=30  Identities=17%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHSCCCT
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=91.41  E-value=0.061  Score=56.99  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++|.|+||+|||++|+.++..++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.41  E-value=0.09  Score=38.31  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQRTHAGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHTTSCC
T ss_pred             cCcCCCCCCcccCcHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=91.41  E-value=0.084  Score=53.50  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++..+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999987654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=91.41  E-value=0.071  Score=53.68  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999987543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.39  E-value=0.1  Score=47.85  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-|+++|.+|+||||+.+++...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34899999999999999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.37  E-value=0.12  Score=56.46  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ...+++|+|++||||||+.+.+...+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999987653

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=91.36  E-value=0.13  Score=37.59  Aligned_cols=30  Identities=17%  Similarity=0.331  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|++|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP   40 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred             CCcccCccCcccCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.35  E-value=0.096  Score=38.17  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.35  E-value=0.088  Score=37.97  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP   38 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHHTSSCS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            488999999999999999999999876544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=91.33  E-value=0.15  Score=33.70  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             CCcccc--cCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCH--RCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~--~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|.  .|++.|.+...|+.|+.+|..
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            378998  899999999999999998864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.33  E-value=0.12  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      ..|+|+|.+|+||||+.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999975

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.32  E-value=0.11  Score=47.88  Aligned_cols=21  Identities=33%  Similarity=0.778  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+++|.+|+||||+.+++...
T Consensus         4 i~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.32  E-value=0.11  Score=56.09  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+.|+|++||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999998765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.31  E-value=0.1  Score=38.04  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGGTSCSSC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=91.28  E-value=0.11  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-|+|+|++|+||||+.+++...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.27  E-value=0.11  Score=56.50  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ...+++++|++||||||+.+.+....
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34599999999999999999987543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.27  E-value=0.12  Score=54.84  Aligned_cols=24  Identities=25%  Similarity=0.606  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+++|+|+.||||||+.+.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            478999999999999999998653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=91.26  E-value=0.18  Score=54.24  Aligned_cols=25  Identities=12%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ...+++|.|+|||||||||..++..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=91.26  E-value=0.11  Score=37.86  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP   40 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGGSSSCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=91.23  E-value=0.093  Score=38.31  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTTSCS
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876443

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.21  E-value=0.11  Score=37.46  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKTHAAKSG   40 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999876544

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.21  E-value=0.089  Score=54.40  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.|+.-.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999987543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=91.20  E-value=0.09  Score=54.80  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.|+.-+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33589999999999999999987654

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.19  E-value=0.11  Score=37.90  Aligned_cols=30  Identities=17%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP   40 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCeECCCCCchhCChHHHHHHHhhcCCCCC
Confidence            479999999999999999999999876443

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.18  E-value=0.08  Score=38.49  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPF  741 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~  741 (761)
                      .+..|..|++.|.+...|+.|+.+|...-
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK   39 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTTTSSCC
T ss_pred             cCccCCCCCCccCChHHHHHHHHHhCCCC
Confidence            48899999999999999999999987643

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.18  E-value=0.12  Score=37.61  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCSC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHhcCCCCC
Confidence            489999999999999999999999876544

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.18  E-value=0.11  Score=37.36  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=91.15  E-value=0.02  Score=38.73  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      |..|..|++.|.+...|+.|+.+|...-|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            68999999999999999999999876544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.12  E-value=0.11  Score=37.47  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=26.0

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPF  741 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~  741 (761)
                      .|..|..|++.|.+...|+.|+.+|...-
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKTHSGQS   39 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            48999999999999999999999987643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.11  E-value=0.097  Score=54.49  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .+.|+|++|||||||.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=91.11  E-value=0.093  Score=54.30  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.|+.-+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3589999999999999999987543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.09  E-value=0.14  Score=47.35  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ..-|+++|.+|+|||||.+++...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456899999999999999999864

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.08  E-value=0.47  Score=52.94  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      .-.+++|.|.||+||||||..++...   +.+..+++.
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl  233 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  233 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence            34699999999999999999987543   445556654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.06  E-value=0.092  Score=37.94  Aligned_cols=27  Identities=26%  Similarity=0.589  Sum_probs=24.5

Q ss_pred             CCccccc--CCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHR--CRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~--C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|.+|..  |++.|.....|+.|+.+|..
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            4899987  99999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.06  E-value=0.095  Score=54.40  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.++.-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3589999999999999999987543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=91.05  E-value=0.16  Score=54.06  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+++|.|+|||||||||..++...
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHH
Confidence            4599999999999999999998764

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.05  E-value=0.1  Score=37.89  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRVHMGEKC   40 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTTTCCSCS
T ss_pred             CCeECCCcCcccCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.05  E-value=0.074  Score=36.74  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             CCcccccCCCCCCCh-HHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSI-PRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~-~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.+. ..|+.|+.+|..
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            478999999999999 999999998754

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.04  E-value=0.1  Score=38.07  Aligned_cols=28  Identities=14%  Similarity=0.374  Sum_probs=25.2

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAP  740 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~  740 (761)
                      .|..|..|++.|.....|+.|+.+|...
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRLHSRE   38 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhCCC
Confidence            4899999999999999999999988654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=91.04  E-value=0.17  Score=53.27  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      ++.++.++|++|+||||++..|+..+   +.....++.|..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence            56788889999999999999987543   345556666653

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.03  E-value=0.12  Score=37.64  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             cCeECCCCChhhCCHHHHHHHHHHcCCCCC
Confidence            478999999999999999999999876544

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.03  E-value=0.096  Score=53.95  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            589999999999999999987543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=90.97  E-value=0.12  Score=37.57  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGGTSCCC
T ss_pred             cCeECCccccccCChHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876544

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.97  E-value=0.17  Score=36.83  Aligned_cols=30  Identities=20%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CCcccccCCCCCCChHHHHHHHh-hcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHIS-SCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~-~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+. .|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~   41 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP   41 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred             CCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence            48999999999999999999999 8876433

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=90.97  E-value=0.21  Score=41.55  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=33.8

Q ss_pred             CCccccc--CCCCCCChHHHHHHH-hhcCCCCCcccccCCc
Q 004319          713 MELRCHR--CRSAHPSIPRLKSHI-SSCRAPFPSSLLENGR  750 (761)
Q Consensus       713 ~~l~C~~--C~~~~~n~~~LK~Hl-~~~~~~~~~~~~~~~~  750 (761)
                      .|.+|.+  |++.|..-..|+.|+ .+|..+-|...++.+.
T Consensus        26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~   66 (73)
T 1x3c_A           26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEE   66 (73)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCC
T ss_pred             CCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccccc
Confidence            5999976  999999999999998 6899999998888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=90.95  E-value=0.21  Score=53.63  Aligned_cols=39  Identities=31%  Similarity=0.282  Sum_probs=28.6

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ..+..+|.++|+||+||||+.+.|+..+   +.....++.|.
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            3456788999999999999999997543   33445555443

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.93  E-value=0.12  Score=37.57  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH   40 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHCCSCCC
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.93  E-value=0.11  Score=37.93  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=26.4

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+..|..|++.|.+...|+.|+..|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred             CCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999876543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=90.93  E-value=0.098  Score=54.80  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.|+.-.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            588999999999999999987544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=90.92  E-value=0.12  Score=47.51  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-|+++|.+|+|||||.+++...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.86  E-value=0.085  Score=38.38  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   40 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence            489999999999999999999998875433

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=90.81  E-value=0.14  Score=41.75  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=25.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAP  740 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~  740 (761)
                      .|.+|..|++.|.+...|+.|+++|...
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            5899999999999999999999998763

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.79  E-value=0.12  Score=37.56  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=26.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCCSSC
T ss_pred             CCcCCCCCCCcCCChHHHHHHHHHhCCCCC
Confidence            489999999999999999999999876543

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.79  E-value=0.092  Score=38.27  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .|..|..|++.|.+...|+.|+.+|...-|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGGGSSCCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            489999999999999999999999876544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.75  E-value=0.13  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-|+++|.+|+|||||.+++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	761
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	2e-16
d1vlra1	192	d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-	2e-16
d1vhua_	192	c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo	2e-09
d2acfa1	168	c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA	6e-09
d1njra_	264	c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker'	2e-08
d1yd9a1	188	c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt	1e-06
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-06
d1spva_	172	c.50.1.2 (A:) Hypothetical protein YmbD {Escherich	4e-06
d1emsa1	160	d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te	1e-05
d1kpfa_	111	d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1	2e-05
d1y23a_	139	d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]	4e-05
d1xqua_	113	d.13.1.1 (A:) Putative hydrolase {Clostridium ther	6e-05
d1fita_	146	d.13.1.1 (A:) FHIT (fragile histidine triad protei	2e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	7e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	8e-04
d2fg1a1	154	c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba	0.002

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 2e-16
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSV 81
           +V+ VG PG+GKSTF +  +   +  +  + +DT+         +C++S  +AL++GK V
Sbjct: 16  VVVAVGFPGAGKSTFIQEHLV--SAGYVHVNRDTLGS-----WQRCVSSCQAALRQGKRV 68

Query: 82  FLDRCNLEREQRTDFVKLG-GPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAV 140
            +D  N +   R  +++      V           +     +  R E         +  V
Sbjct: 69  VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR-EMTDPSHAPVSDMV 127

Query: 141 VNRMLQKKELPKLSEGFSRITLC 163
           +    ++ E P L+EGF  I   
Sbjct: 128 MFSYRKQFEPPTLAEGFLEILEI 150

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 567 TAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMH 626
             ++      D   +  D+    +       +++ +    G+  L D+  EHL +L+ + 
Sbjct: 42  RIVFENPDPSDGFVLIPDLKW--NQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNIL 99

Query: 627 AVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNS 669
             G +   K          R+  H  PS   LH+H  +  F +
Sbjct: 100 REGQEAILKRYQVTGD-RLRVYLHYLPSYYHLHVHFTALGFEA 141

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 337 QKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA 396
           +  +         GDIT+           I NAAN RL+  GGGV  AI  A      + 
Sbjct: 6   EAKVGDITLKLAQGDITQY------PAKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLY 58

Query: 397 TAERAKSLY---------PGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDG 447
           T    K++           G  V+ P  +        G+ +V H +GP  +      L  
Sbjct: 59  TEISKKAMREQFGRDYIDHGEVVVTPAMNLEER----GIKYVFHTVGPICSGMWSEEL-- 112

Query: 448 DYVKGCEILRKAYTSLFE 465
                 E L KA+    E
Sbjct: 113 -----KEKLYKAFLGPLE 125

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

 Score = 53.9 bits (129), Expect = 6e-09
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
            DI +          VI NAAN  LK  GGGV  A+  A   A++  + +  K   P   
Sbjct: 20  VDIVKEAQSAN--PMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTV 76

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILR 457
               L S   L         +HV+GPN+N      L     +      
Sbjct: 77  GGSCLLSGHNLA-----KKCLHVVGPNLNAGEDIQLLKAAYENFNSQD 119

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 315 RLVLVDLTQG------SKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGGLCCNVIAN 368
           R++L D  +         I            I+     + +  + +           I +
Sbjct: 3   RIILCDTNEVVTNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVS 62

Query: 369 AANWRLKPGGGGVNAAIFSAAGPAL---EVATAERAKSLYPGNSVIVP---LPSTSPLCG 422
             N      GGG + A+++  G              +    G++ +V          +  
Sbjct: 63  PGNSYGY-LGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIEC 121

Query: 423 REGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSL 463
           R+G+ ++IHV                   G E +  A  + 
Sbjct: 122 RDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNA 162

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 21/123 (17%)

Query: 343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAK 402
           +K      DI  +        + + +  N      GG V + +    G     A  E  K
Sbjct: 14  QKLQVVQADIASI------DSDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRK 66

Query: 403 SLYPGNSVIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTS 462
              P       + +   L        VIH   P     +            E+L K   +
Sbjct: 67  KNGPLEVAGAAVSAGHGL----PAKFVIHCNSPVWGSDKC----------EELLEKTVKN 112

Query: 463 LFE 465
              
Sbjct: 113 CLA 115

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 25/147 (17%)

Query: 22  LVIMVGAPGSGKSTFCEHV------------------MRSSARPWARICQDTINKGKSGT 63
           +++ +G PGSGKST+                      + +                 +G 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 64  KVQCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGP-EVDVHAVVLDLPAKLCISRS 122
           +     S        K V +   NL  E+R  +          V   V D+P    + R+
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123

Query: 123 VKRIEHEGNLQGGKAAAVVNRMLQKKE 149
            KR              V+  M +   
Sbjct: 124 SKRGTKAVP------IDVLRSMYKSMR 144

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GDIT+L        +VI NAAN  L  GGGGV+ AI  AAGPAL  A  +  +      +
Sbjct: 8   GDITKL------AVDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPT 60

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFE 465
                     L G      V+H +GP       N          ++L+ AY +   
Sbjct: 61  GHA----VITLAGDLPAKAVVHTVGPVWRGGEQNE--------DQLLQDAYLNSLR 104

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 3/126 (2%)

Query: 582 SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA 641
           +    V  +L P    H+LV  +            E   +      V     +       
Sbjct: 35  TPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTST 94

Query: 642 SLAFRLGYHSAPSMRQLHLHVI---SQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISN 698
           ++  + G  +  ++  +H+H++   + DF    +  K   +         S + + E + 
Sbjct: 95  TICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPRSNEQMAEEAV 154

Query: 699 HGKATL 704
             +  +
Sbjct: 155 VYRNLM 160

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA- 641
           D  +  +D+ P+A  H LV+ +     +++   ++   +L  +  VG K A         
Sbjct: 21  DRCLAFHDISPQAPTHFLVIPKKHI-SQISVAEDDDESLLGHLMIVGKKCAADLGLNKGY 79

Query: 642 SLAFRLGYHSAPSMRQLHLHVI 663
            +    G     S+  +HLHV+
Sbjct: 80  RMVVNEGSDGGQSVYHVHLHVL 101

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 28/81 (34%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDAS 642
           + V+   D+    + H LV+ +    +          Q    +  +     ++F     +
Sbjct: 22  EHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLN 81

Query: 643 LAFRLGYHSAPSMRQLHLHVI 663
                G  +  S+   H+H+I
Sbjct: 82  TLNNNGEKAGQSVFHYHMHII 102

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 583 DDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA- 641
           + V+ + D+ P A  H+L++ +    +      +    ++    A      +  + E   
Sbjct: 23  ERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGY 82

Query: 642 SLAFRLGYHSAPSMRQLHLHVIS 664
            L    G  +  ++  LH H++ 
Sbjct: 83  RLITNCGVAAGQTVFHLHYHLLG 105

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 32/82 (39%)

Query: 582 SDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA 641
           ++    L +  P    H+LV              +E   + QT   VG    + F     
Sbjct: 18  TELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSL 77

Query: 642 SLAFRLGYHSAPSMRQLHLHVI 663
           + + + G  +  +++ +H+HV+
Sbjct: 78  TFSMQDGPEAGQTVKHVHVHVL 99

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG 62
          ++I+ G   +GKS     +      PW     D++ +    
Sbjct: 5  MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 16/124 (12%)

Query: 22  LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKV---------------- 65
           ++++ G PGSGKST  E +      P      D +       ++                
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65

Query: 66  QCLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR 125
                A    K+G  V LD                     V         + C+ R    
Sbjct: 66  IAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDS 125

Query: 126 IEHE 129
           +   
Sbjct: 126 LSDP 129

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 18/119 (15%)

Query: 350 GDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNS 409
           GD T     G     VI +  N      G G   A+        E               
Sbjct: 7   GDATAPIGSG---VKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQEEFTLG 62

Query: 410 VIVPLPSTSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFL 468
            +  +   + L       +V +++G +   +              I   A     +   
Sbjct: 63  AVQFVNVENKL-------YVANMIGQHGIYKDSK-------GLPPIRYDAVRQCLKEVA 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	761
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.89
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.88
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.87
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	99.86
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	99.81
d1kpfa_	111	Protein kinase C inhibitor-1, PKCI-1 {Human (Homo	99.76
d1vlra1	192	mRNA decapping enzyme DcpS C-terminal domain {Mous	99.76
d1xqua_	113	Putative hydrolase {Clostridium thermocellum [TaxI	99.7
d1emsa1	160	NIT-FHIT fusion protein, C-terminal domain {Nemato	99.7
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	99.65
d1fita_	146	FHIT (fragile histidine triad protein) {Human (Hom	99.64
d1y23a_	139	Hit {Bacillus subtilis [TaxId: 1423]}	99.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.62
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.51
d2oika1	139	Histidine triad protein Mfla2506 {Methylobacillus	99.48
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.43
d1z84a2	156	Galactose-1-phosphate uridylyltransferase {Thale c	99.36
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.35
d1guqa2	171	Galactose-1-phosphate uridylyltransferase {Escheri	99.33
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	99.26
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.24
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.18
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.14
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.12
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.1
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.09
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.06
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.06
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.05
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.91
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	98.91
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.87
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.87
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.84
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.82
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.79
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	98.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.77
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.72
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.62
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	98.57
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	98.57
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.55
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.51
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.5
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.5
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.39
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.33
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.25
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.21
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.12
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.11
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.07
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.03
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.02
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.98
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.97
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.87
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.62
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.58
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.53
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.46
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.45
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.35
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.33
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.17
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.16
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.1
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.08
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1okkd2	207	GTPase domain of the signal recognition particle r	96.98
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.92
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.88
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.84
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.82
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.75
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	96.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.44
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.33
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.3
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.26
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.25
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.09
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	96.01
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.93
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.91
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.7
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.58
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.56
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.46
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	95.4
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.27
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	95.05
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.05
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.97
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	94.95
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.93
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.51
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.44
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.43
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	94.42
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.35
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.34
d2pofa1	220	CDP-diacylglycerol pyrophosphatase CDH {Escherichi	94.34
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	94.26
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.18
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.17
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.1
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	94.05
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	94.01
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.88
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.83
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.73
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.58
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.5
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.42
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.26
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.07
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	93.03
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	92.96
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.94
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	92.73
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	92.71
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.68
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.61
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.61
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.45
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.38
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.35
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.29
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	92.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.15
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.15
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.08
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.08
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.08
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.03
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	91.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	91.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	91.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	91.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	91.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.86
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.83
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	91.76
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.75
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.72
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.65
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	91.63
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	91.45
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.21
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.19
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.16
d1z84a1	173	Galactose-1-phosphate uridylyltransferase {Thale c	91.16
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.07
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.01
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	90.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	90.83
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	90.8
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.79
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	90.72
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	90.69
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.61
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	90.61
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.57
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.51
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.48
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.43
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.41
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.38
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.3
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.29
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.23
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.18
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	90.16
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.14
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.06
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	89.96
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	89.79
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.73
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.73
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.71
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.59
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	89.4
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	89.35
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	89.22
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.14
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.13
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.12
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.1
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.06
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.03
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.02
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	89.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	88.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	88.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	88.77
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	88.77
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.63
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.63
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	88.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	88.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.49
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	88.44
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	88.39
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	88.13
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	88.12
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.94
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	87.83
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	87.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.66
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.64
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	87.64
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.47
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	87.45
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.32
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	87.28
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.22
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.2
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.08
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	87.08
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	86.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	86.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	86.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	86.35
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	86.29
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	86.26
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	85.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	85.79
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	85.73
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	85.35
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.96
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.73
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.65
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.63
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.52
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.3
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	83.95
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	83.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	83.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	82.98
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	82.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	82.64
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	82.45
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	81.97
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	81.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.62
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	81.11
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	80.91
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	80.68

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.9e-23  Score=201.57  Aligned_cols=141  Identities=24%  Similarity=0.360  Sum_probs=127.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLEREQRTD   95 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~~~R~~   95 (761)
                      ..+.|.||+|+|+|||||||||++++...+  +.+|+.|.+     .++..+...+..+|..|.+||+|+||....+|..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~--~~~i~~D~~-----~~~~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~   82 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAG--YVHVNRDTL-----GSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRAR   82 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGT--CEEEEHHHH-----CSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcC--CEEEchHHH-----HHHHHHHHHHHHHHHCCCCceeeCcCCCHHHHHH
Confidence            457899999999999999999999998887  889999998     4577788999999999999999999999999999


Q ss_pred             HHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEEEcC
Q 004319           96 FVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQ  164 (761)
Q Consensus        96 ~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~vv~  164 (761)
                      |+++ +.+++.+++|+|++|.++|.+|+.+|..+... ...+++.++.+|.+.|++|...|||+.|+.++
T Consensus        83 ~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~-~~~v~~~~~~~~~~~fe~P~~~Egf~~i~~i~  151 (172)
T d1yj5a2          83 YIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPS-HAPVSDMVMFSYRKQFEPPTLAEGFLEILEIP  151 (172)
T ss_dssp             HHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTT-CCCCCHHHHHHHHHHCCCCCGGGSCSCEEEEC
T ss_pred             HHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcc-cCccHHHHHHHHHHhCCCCCcccCCcEEEEEC
Confidence            9999 88999999999999999999999999765332 23588999999999999999999999999875

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.1e-23  Score=204.44  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=102.7

Q ss_pred             ccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCC
Q 004319          339 HINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLP  415 (761)
Q Consensus       339 ~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~  415 (761)
                      .+.|.+|.|++||||++.      +|||||+||..|. ++||+++||+++||++|++||+++.   +++.+|++++|+  
T Consensus        10 ~~~~~~i~i~~GDIt~~~------~DaIVn~an~~l~-~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~--   80 (188)
T d1yd9a1          10 LFLGQKLQVVQADIASID------SDAVVHPTNTDFY-IGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA--   80 (188)
T ss_dssp             CTTSCEEEEECSCGGGCC------CSEEEEECCTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE--
T ss_pred             cccCCEEEEEeCCcCcCC------CCEEEECCCccCC-CCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecc--
Confidence            467899999999999997      9999999999999 8999999999999999999998763   789999999999  


Q ss_pred             CCCCCCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          416 STSPLCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       416 ~~~~~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                           +++|+|++|||+|||.|+..          ...++|++||++||+.|     .|||||.++
T Consensus        81 -----~~~L~~k~IiH~v~P~~~~~----------~~~~~L~~~~~~~L~~a~~~~~~SIafP~ig  131 (188)
T d1yd9a1          81 -----GHGLPAKFVIHCNSPVWGSD----------KCEELLEKTVKNCLALADDRKLKSIAFPSIG  131 (188)
T ss_dssp             -----CTTSSSSEEEEECCCCTTST----------THHHHHHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred             -----cCCCCceEEeeeccccCCCc----------chHHHHHHHHHHHHHHHHHcCCCeEEecccc
Confidence                 58899999999999999653          34689999999999987     588998775

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-22  Score=196.91  Aligned_cols=111  Identities=34%  Similarity=0.439  Sum_probs=98.6

Q ss_pred             EEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCCC
Q 004319          344 KFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSPL  420 (761)
Q Consensus       344 ~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~~  420 (761)
                      +|+|++||||++.      +|||||+||..|. ++||+++||+++||++++++|.++.   +++++|++++|+       
T Consensus         2 kI~iv~GDI~~~~------~DaIVn~~n~~l~-~~~gv~~ai~~~~G~~~~~~~~~~~~~~g~~~~g~~~~T~-------   67 (172)
T d1spva_           2 RIHVVQGDITKLA------VDVIVNAANPSLM-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITL-------   67 (172)
T ss_dssp             CEEEEESCGGGCC------CSEEEEECCTTCS-CCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEEC-------
T ss_pred             eEEEEeCccCcCC------CCEEEECCCcccc-CCCcHHHHHHHHcCCchHHHHHHHHHHhCCCCCCCEEEEE-------
Confidence            6899999999996      9999999999999 8999999999999999999998863   789999999999       


Q ss_pred             CCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          421 CGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       421 ~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      +++|+|++|||+|+|.|+...        ....++|++||++||+.|     .|||||-++
T Consensus        68 ~~~l~~k~IiH~v~P~~~~~~--------~~~~~~l~~~~~~~L~~a~~~~~~sIa~P~lg  120 (172)
T d1spva_          68 AGDLPAKAVVHTVGPVWRGGE--------QNEDQLLQDAYLNSLRLVAANSYTSVAFPAIS  120 (172)
T ss_dssp             CTTSSSSEEEEECCCCCSSSS--------SSHHHHHHHHHHHHHHHHHHTTCSEEEECCTT
T ss_pred             cCCCCCcEEEEeccccccCCc--------hHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence            478999999999999997643        235689999999999987     477887553

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=2.4e-22  Score=199.54  Aligned_cols=120  Identities=27%  Similarity=0.272  Sum_probs=99.6

Q ss_pred             hhcccCCeEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHH--HHHHHh-------cCCCCC
Q 004319          336 AQKHINPKKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALE--VATAER-------AKSLYP  406 (761)
Q Consensus       336 ~~~~~~~~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~--~e~~~~-------~~~~~~  406 (761)
                      +++.+++.+|+|++||||++.      +|||||+||.+|. ++|||++||++++|++.+  .++...       .+++.+
T Consensus         5 ~~~~~~~~~i~i~~GdIt~~~------~DaIVN~aN~~l~-~~gGv~~aI~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   77 (192)
T d1vhua_           5 FEAKVGDITLKLAQGDITQYP------AKAIVNAANKRLE-HGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDH   77 (192)
T ss_dssp             EEEEETTEEEEEEESCGGGSC------CSEEEEEECTTCC-CCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCT
T ss_pred             EEEEECCEEEEEEeccCCccc------CCEEEECcCcccC-CCCcHHHHHHHhhCchhHhHHHHHHHHHHHhhcCCCCCC
Confidence            467889999999999999997      9999999999999 899999999999997432  222211       266999


Q ss_pred             CCEEEecCCCCCCCCCCCC---ccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH-----HHhhccccc
Q 004319          407 GNSVIVPLPSTSPLCGREG---VTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF-----LSIVRSQEK  476 (761)
Q Consensus       407 G~avvT~l~~~~~~~~~l~---~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a-----~siaf~~~~  476 (761)
                      |++++|+       +++|+   |+||||+|||.|+....       .+..+.|++||++||+.|     .|||||.++
T Consensus        78 G~~~~T~-------~~~L~~~~~k~ViH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lg  141 (192)
T d1vhua_          78 GEVVVTP-------AMNLEERGIKYVFHTVGPICSGMWS-------EELKEKLYKAFLGPLEKAEEMGVESIAFPAVS  141 (192)
T ss_dssp             TCCEEEE-------CGGGGGGTCCEEEEEECCCCTTCCC-------HHHHHHHHHHHHHHHHHHHHHTCCEEEECCTT
T ss_pred             CcEEEEe-------cccCCcccccEEEEEeeecccCCCc-------chhHHHHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence            9999999       36664   89999999999986532       356789999999999987     588998774

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=99.81  E-value=8.3e-21  Score=184.44  Aligned_cols=112  Identities=26%  Similarity=0.327  Sum_probs=94.6

Q ss_pred             eEEEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHHHHHhc---CCCCCCCEEEecCCCCCC
Q 004319          343 KKFFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERA---KSLYPGNSVIVPLPSTSP  419 (761)
Q Consensus       343 ~~l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e~~~~~---~~~~~G~avvT~l~~~~~  419 (761)
                      .+|.|+.||||++....  .+|||||+||++|. ++|||++||+++||++|++||.++.   +++.+|++++|+      
T Consensus        13 ~~v~i~~gDI~k~~~~~--~~D~IVN~aN~~l~-~~gGvs~AI~~~aG~~l~~e~~~~~~~~g~~~~G~~v~t~------   83 (168)
T d2acfa1          13 DNVAIKCVDIVKEAQSA--NPMVIVNAANIHLK-HGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLS------   83 (168)
T ss_dssp             SSEEEEESCHHHHHHHH--CCSEEEEECCTTCC-CCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEE------
T ss_pred             CcEEEEEcccceecccC--CCCEEEECCCcccC-CCChHHHHHHHHhCHHHHHHHHHHHHhcCCCcCCCeEecc------
Confidence            56999999999972100  28999999999999 9999999999999999999999863   789999999998      


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhhccccc
Q 004319          420 LCGREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGFLSIVRSQEK  476 (761)
Q Consensus       420 ~~~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a~siaf~~~~  476 (761)
                       +++| +++|||+|||+|....          ..++|++||++++ ...|||||.++
T Consensus        84 -g~~l-~k~IiH~v~P~~~~~~----------~~~ll~~~~~~~~-~~~sIA~Paig  127 (168)
T d2acfa1          84 -GHNL-AKKCLHVVGPNLNAGE----------DIQLLKAAYENFN-SQDILLAPLLS  127 (168)
T ss_dssp             -CTTT-CSEEEEECCCCGGGTC----------CTTHHHHHHHGGG-GSSEEEECCTT
T ss_pred             -CcCc-chhheeecCCCccccc----------HHHHHHHHHHhhc-cCceEEecccc
Confidence             4667 6899999999997643          3468999999875 45799999886

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.5e-19  Score=160.51  Aligned_cols=91  Identities=20%  Similarity=0.365  Sum_probs=82.5

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccC-CceeeeecccCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHED-ASLAFRLGYHSA  652 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~-~~~~~~~G~ha~  652 (761)
                      .|+.+|||||.++||+|+||.+++|+||||| +|+.++.+|++++..++.+|..++.+++++....+ ++..++.|..++
T Consensus        12 ~p~~ivyede~~~af~D~~P~~~gH~LViPk-~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~n~g~~ag   90 (111)
T d1kpfa_          12 IPAKIIFEDDRCLAFHDISPQAPTHFLVIPK-KHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGG   90 (111)
T ss_dssp             SCCCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHT
T ss_pred             CCccEEEeCCCEEEEecCCCCCCceEEEeec-chhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCccCC
Confidence            5778999999999999999999999999999 89999999999999999999999999988775544 456688888899


Q ss_pred             CcccceeeeeecC
Q 004319          653 PSMRQLHLHVISQ  665 (761)
Q Consensus       653 pSv~HLHlHVIs~  665 (761)
                      |||+|||+|||.+
T Consensus        91 q~V~HlH~Hiip~  103 (111)
T d1kpfa_          91 QSVYHVHLHVLGG  103 (111)
T ss_dssp             CCSSSCCEEEEES
T ss_pred             cccceeEEEEeCC
Confidence            9999999999985

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1e-18  Score=170.72  Aligned_cols=129  Identities=19%  Similarity=0.277  Sum_probs=104.8

Q ss_pred             chhHHHHHhhhcCCCCCCCcEEEEcCc----EEEEecCC----CCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHH
Q 004319          558 GSWAQALYRTAMYPERHKDDLLEISDD----VVVLNDLY----PKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVG  629 (761)
Q Consensus       558 ~~w~~~L~~~~~~Pe~~p~~vvyedd~----~vai~D~~----Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~  629 (761)
                      --|-.+.+..-+++|.    |||+|++    |+++.|+.    |.+..|+|+||++++|.|+.||+++|+++|.+|+.++
T Consensus        27 ~~Wv~nIL~~~~E~e~----i~y~D~d~~~gFvllpD~kWd~~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~  102 (192)
T d1vlra1          27 IQWVYNILDKKAEADR----IVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREG  102 (192)
T ss_dssp             CHHHHHHHTC----CC----CSEEECCTTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCccce----eEEeCCCCCCCEEEecccccCCCcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHH
Confidence            5687777666556665    9999965    99999997    9999999999995559999999999999999999999


Q ss_pred             HHHHHHhhccCCceeeeecccCCCcccceeeeeecCCcccccccccccccccCcccccCHHHHHHHHHhcC
Q 004319          630 MKWAEKFLHEDASLAFRLGYHSAPSMRQLHLHVISQDFNSKHLKNKKHWNSFNTAFFCDSVDVLEEISNHG  700 (761)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~G~ha~pSv~HLHlHVIs~d~~s~~lk~kkH~nsF~t~fFv~~~~v~~~l~~~g  700 (761)
                      ++++.+.... ....+++|||++|||+||||||++.+|.++++.-.|.         ..+++||+.|+..+
T Consensus       103 ~~~i~~~~gi-~~~~~Rig~H~~PSv~HLHlHvi~~~~~~~g~~~~ra---------~lL~dvI~nLe~~~  163 (192)
T d1vlra1         103 QEAILKRYQV-TGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERA---------HLLAQVIENLECDP  163 (192)
T ss_dssp             HHHHHHHHCC-CGGGEEEEEESSCSSSSCEEEEEETTSCCTTCBTTTE---------EEHHHHHHHHHHCT
T ss_pred             HHHHHHHhCC-ChhheEEEEECCCCEeeeEEEEEeccCCCCcccccee---------eeHHHHHHHHhcCc
Confidence            9987665322 2345899999999999999999999999987655442         25889999998754

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.70  E-value=1.3e-17  Score=151.20  Aligned_cols=97  Identities=19%  Similarity=0.344  Sum_probs=82.7

Q ss_pred             hhhcCCCCCCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhh-c-cCCce
Q 004319          566 RTAMYPERHKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFL-H-EDASL  643 (761)
Q Consensus       566 ~~~~~Pe~~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~-~-~~~~~  643 (761)
                      +++...  .|+.+|||||+++||.|+||.+++|+||||| +|+.++.+|++++.+++..+...+.+.+++.. . .+.+.
T Consensus         8 ~I~~~e--~p~~ivyede~~~af~d~~P~~~gH~LViPk-~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   84 (113)
T d1xqua_           8 KIIKRE--LPSTIYYEDERVIAIKDINPAAPVHVLIIPK-EHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRL   84 (113)
T ss_dssp             HHHTTS--SCBCEEEECSSEEEEECSSCSSSEEEEEEES-SCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCEEE
T ss_pred             cccCCC--CcccEEEeCCCEEEEECCCCCCCceEEEeec-ccccchhhccchhHHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            444442  4688999999999999999999999999999 89999999999999999999999998887652 2 23445


Q ss_pred             eeeecccCCCcccceeeeeecC
Q 004319          644 AFRLGYHSAPSMRQLHLHVISQ  665 (761)
Q Consensus       644 ~~~~G~ha~pSv~HLHlHVIs~  665 (761)
                      .++.|..++++|+|||+|||++
T Consensus        85 ~~~~g~~agq~v~HlH~Hvip~  106 (113)
T d1xqua_          85 ITNCGVAAGQTVFHLHYHLLGG  106 (113)
T ss_dssp             ECCCSTTTTCCSCSCCEEEEES
T ss_pred             EEeCccccccccCeeEEEEeCc
Confidence            6778888899999999999986

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.70  E-value=3.8e-17  Score=157.00  Aligned_cols=91  Identities=16%  Similarity=0.272  Sum_probs=76.6

Q ss_pred             CCC-cEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccC
Q 004319          574 HKD-DLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHS  651 (761)
Q Consensus       574 ~p~-~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha  651 (761)
                      +|+ .||||||.++||.|++|.++||+||||| +|+.++.+|+++++..|..+.....+.+++....++ +..++.|..+
T Consensus        26 iP~~~ii~ede~~~af~Di~P~~pgH~LVIPK-~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~G~~a  104 (160)
T d1emsa1          26 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPK-RVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDA  104 (160)
T ss_dssp             CCGGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGG
T ss_pred             CCcceEEEeCCCEEEEECCCCCCCCeEEEEEe-cccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEEEecccCCCC
Confidence            565 4889999999999999999999999999 899999999999988888877776666666554433 4456777788


Q ss_pred             CCcccceeeeeecC
Q 004319          652 APSMRQLHLHVISQ  665 (761)
Q Consensus       652 ~pSv~HLHlHVIs~  665 (761)
                      +++|+|+|+|||.+
T Consensus       105 Gq~V~HlHiHIIPR  118 (160)
T d1emsa1         105 GQTVPHVHIHILPR  118 (160)
T ss_dssp             TCCSSSCCEEEEEE
T ss_pred             CeEEeEEEEEEECC
Confidence            99999999999974

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=9.2e-17  Score=165.56  Aligned_cols=151  Identities=21%  Similarity=0.242  Sum_probs=106.9

Q ss_pred             eEEEEecccccchhhHHHHHHhhhcc-----c-CCeEEEEEEccccccccc---C----CccccEEEeCCCCCCcCCCCh
Q 004319          314 ARLVLVDLTQGSKILSLVRAKAAQKH-----I-NPKKFFTFVGDITRLYTG---G----GLCCNVIANAANWRLKPGGGG  380 (761)
Q Consensus       314 i~~v~vD~~~~s~~ls~v~~~~~~~~-----~-~~~~l~v~~GDIt~~~~~---g----~~~~daIVNaaN~~L~~~~gG  380 (761)
                      ++++++|.+..-       ..+|+..     + ++..+.|++|+|.+....   +    ...+||||||||+.+. +|||
T Consensus         2 mkliL~d~n~~~-------~~aw~~~~~~~~~~~~~~v~i~~g~i~~l~~~~~~~~~~~~~~~~AIVnpANS~g~-mgGG   73 (264)
T d1njra_           2 MRIILCDTNEVV-------TNLWQESIPHAYIQNDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGY-LGGG   73 (264)
T ss_dssp             CEEEEEESCHHH-------HHHHHHHCC-------CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCC-CCSS
T ss_pred             ceEEEEcCCHHH-------HHHHHHhcchhhccCCCceEEEeCCHHHhhhhhccccccccCCCCEEEeCCCcCCC-CCcc
Confidence            578888876522       2333332     2 245699999999776310   0    0137899999999999 9999


Q ss_pred             hhHHHHHhhcH-HHHHHHHHhc--CCCCCCCEEEecCC----CCCCCCCCCCccEEEEe---cCCCCCCCCCCCCCCCch
Q 004319          381 VNAAIFSAAGP-ALEVATAERA--KSLYPGNSVIVPLP----STSPLCGREGVTHVIHV---LGPNMNPRRPNCLDGDYV  450 (761)
Q Consensus       381 V~~AI~~aAG~-~l~~e~~~~~--~~~~~G~avvT~l~----~~~~~~~~l~~k~VIH~---VGP~~~~~~~~~l~~~~~  450 (761)
                      |++||++++|+ .||+++++..  +.+++|++++|+..    .++. +++++|+||||+   |||.|.....+   ..+.
T Consensus        74 vd~AI~~a~Gg~~le~~~r~~i~~~~~pvG~a~iv~~g~~~~~~~~-~~nl~~kyVIHaPTMv~P~~~~~~~~---~~~~  149 (264)
T d1njra_          74 FDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTI-ECRDGIRYIIHVPTVVAPSAPIFNPQ---NPLK  149 (264)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEEEGGGGGCC-----CCTTEEEEEECCCBSCSSSCSCCTT---CHHH
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHhhcCCCCCceEEeccCCccccccc-cccCCCCEEEECcccccCCCCCCCch---HHHH
Confidence            99999999765 5888888764  45789999998721    1122 369999999999   89988654332   1233


Q ss_pred             hhHHHHHHHHHHHHHH----HHHhhccccc
Q 004319          451 KGCEILRKAYTSLFEG----FLSIVRSQEK  476 (761)
Q Consensus       451 ~~~~~L~~ay~~~L~~----a~siaf~~~~  476 (761)
                      .+.+.|.+|++++|..    ..|||||.++
T Consensus       150 ~~~~~l~~a~~~~L~a~e~~i~SIAfPaig  179 (264)
T d1njra_         150 TGFEPVFNAMWNALMHSPKDIDGLIIPGLC  179 (264)
T ss_dssp             HTHHHHHHHHHHHHHTSCTTCSEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCEEEeCccc
Confidence            4668999999999965    4799999886

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=149.56  Aligned_cols=90  Identities=18%  Similarity=0.285  Sum_probs=78.0

Q ss_pred             CCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCCC
Q 004319          575 KDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSAP  653 (761)
Q Consensus       575 p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~p  653 (761)
                      |+.+|||||.++||.|++|.++||+||||| +|+.++.+|++++...|.+++..+.+.+++....++ +..++.|.++++
T Consensus        11 p~~ii~e~e~~~afld~~P~~pgH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq   89 (146)
T d1fita_          11 PSVVFLKTELSFALVNRKPVVPGHVLVCPL-RPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQ   89 (146)
T ss_dssp             GGGEEEECSSEEEEECSSCSSTTCEEEEES-SCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTC
T ss_pred             cceEEEECCCEEEEECCCCCCCcEEEEEec-ceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCC
Confidence            456999999999999999999999999999 899999999999999999888888877777665544 334667777889


Q ss_pred             cccceeeeeecC
Q 004319          654 SMRQLHLHVISQ  665 (761)
Q Consensus       654 Sv~HLHlHVIs~  665 (761)
                      +|+|||+|||.+
T Consensus        90 ~v~HlH~HiiPR  101 (146)
T d1fita_          90 TVKHVHVHVLPR  101 (146)
T ss_dssp             CSSSCCEEEEEE
T ss_pred             CCCEEEEEEecC
Confidence            999999999975

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=1.7e-16  Score=148.72  Aligned_cols=91  Identities=12%  Similarity=0.140  Sum_probs=77.8

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC-ceeeeecccCC
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA-SLAFRLGYHSA  652 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~-~~~~~~G~ha~  652 (761)
                      .|+.+|||||.++||.|++|.++||+||||| +|+.++.+|+.++...|..+...+.+.+++....++ +..++.|-.++
T Consensus        13 ~p~~~i~ede~~~af~d~~P~~~GH~LViPk-~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~~i~~n~g~~ag   91 (139)
T d1y23a_          13 IPSAKVYEDEHVLAFLDISQVTKGHTLVIPK-THIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAG   91 (139)
T ss_dssp             SCCCEEEECSSEEEEECTTCSSTTCEEEEES-SCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGT
T ss_pred             CCccEEEECCCEEEEecCCCCCCcEEEEEEe-cccccccccchHHHHHHHHHHHHHHHHHhhhcccCCcEEEeCCCcccc
Confidence            4678999999999999999999999999999 799999999999988888777777766666655544 44567777788


Q ss_pred             CcccceeeeeecC
Q 004319          653 PSMRQLHLHVISQ  665 (761)
Q Consensus       653 pSv~HLHlHVIs~  665 (761)
                      ++|+|||+|||.+
T Consensus        92 q~v~H~H~HviPR  104 (139)
T d1y23a_          92 QSVFHYHMHIIPR  104 (139)
T ss_dssp             CCSSSCCEEEEEE
T ss_pred             EecCEEEEEEEcc
Confidence            9999999999976

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.62  E-value=5.5e-16  Score=144.97  Aligned_cols=125  Identities=25%  Similarity=0.337  Sum_probs=98.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC---------CCCcH-------HHHHHHHHHHHHCC---C
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGTK-------VQCLTSASSALKKG---K   79 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~---------~~~~~-------~~~~~~~~~~L~~g---~   79 (761)
                      ++.||+|+|+|||||||+|++|.+... .+.+++.|+++..         .....       ......+...+..+   .
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK   79 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCC
Confidence            457899999999999999999987653 3788998887421         11111       11224445555544   4


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcC
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKEL  150 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~  150 (761)
                      .+|+|.+++....+..+.++ +..++.+.+|+|++|.++|.+|+.+|..+      .++++++.+|++.++.
T Consensus        80 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------~~~~~~i~~~~~~~~~  145 (152)
T d1ly1a_          80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK------AVPIDVLRSMYKSMRE  145 (152)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG------CCCHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCC------CCCHHHHHHHHHHHHh
Confidence            69999999999999999999 88899999999999999999999999875      6789999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.4e-14  Score=132.41  Aligned_cols=144  Identities=14%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC---------CCCcH-------HHHHHHHHHHHHCCCcE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---------KSGTK-------VQCLTSASSALKKGKSV   81 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~---------~~~~~-------~~~~~~~~~~L~~g~~V   81 (761)
                      .++.|++|+|+|||||||+|+.|++.++  +.+++.|.+...         .....       ......+...+..+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   81 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCce
Confidence            4678999999999999999999999998  677888877421         11111       11224555666777888


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCCccCCceEEE
Q 004319           82 FLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRIT  161 (761)
Q Consensus        82 IID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~~~EgFd~V~  161 (761)
                      +++........|..+.   ..+..+.+|+|++|.+++.+|+.+|..+      ....+.+.+++..++.|...|. + ++
T Consensus        82 ~~~~~~~~~~~~~~~~---~~~~~~~~v~l~~~~e~~~~Rl~~R~~~------~~~~~~~~~~~~~~e~~~~~e~-~-~~  150 (171)
T d1knqa_          82 LIVCSALKKHYRDLLR---EGNPNLSFIYLKGDFDVIESRLKARKGH------FFKTQMLVTQFETLQEPGADET-D-VL  150 (171)
T ss_dssp             EEECCCCSHHHHHHHH---TTCTTEEEEEEECCHHHHHHHHHTSTTC------CCCHHHHHHHHHHCCCCCTTCT-T-EE
T ss_pred             EeeccchHHHHHHHHH---HhCCCceEEeecCCHHHHHHHHHhCcCC------CccHHHHHhhHHHhhCCCcccC-C-EE
Confidence            8888888777776553   4455678899999999999999999765      4568889999999998887665 3 45


Q ss_pred             EcCChhhHHHHHH
Q 004319          162 LCQNENDVQAALD  174 (761)
Q Consensus       162 vv~~~~ei~~~l~  174 (761)
                      +++.+..++++..
T Consensus       151 ~id~~~~~e~v~~  163 (171)
T d1knqa_         151 VVDIDQPLEGVVA  163 (171)
T ss_dssp             EEECSSCHHHHHH
T ss_pred             EEeCCCCHHHHHH
Confidence            5565555655543

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

Probab=99.48  E-value=4.9e-14  Score=131.85  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=73.9

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCCcc
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAPSM  655 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~pSv  655 (761)
                      ..+||+||.+++|+|.+|..+||+||||| +|+.++.+|++++...|..+...+.+.+++....+.   ++++ .++++|
T Consensus        14 ~~ii~e~~~~~v~l~~~p~~pGh~Lvipk-~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~~---~n~~-~~g~~v   88 (139)
T d2oika1          14 GEILWQDALCRVVHVENQDYPGFCRVILN-RHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDK---INLA-SLGNMT   88 (139)
T ss_dssp             SEEEEECSSEEEEECCCTTCTTCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSE---EEEE-ECCSSS
T ss_pred             CeEEEECCCEEEEEcCCCCCCcEEEEecc-cccchhhhccHHHHHHHHHHHHHHhHHHHhhcchhh---hHHH-HhcCCC
Confidence            56999999999999999999999999999 899999999999999998888888888777655543   4444 467899


Q ss_pred             cceeeeeecC
Q 004319          656 RQLHLHVISQ  665 (761)
Q Consensus       656 ~HLHlHVIs~  665 (761)
                      +|||+|||.+
T Consensus        89 ~HlH~HviPR   98 (139)
T d2oika1          89 PHVHWHVIPR   98 (139)
T ss_dssp             CSCEEEEEEE
T ss_pred             CeEEEEEecc
Confidence            9999999986

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.43  E-value=7.9e-13  Score=128.88  Aligned_cols=154  Identities=19%  Similarity=0.337  Sum_probs=101.6

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-C------------------CCCCcHHHHHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-K------------------GKSGTKVQCLTSASSALK   76 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-~------------------~~~~~~~~~~~~~~~~L~   76 (761)
                      +.++|.+|+|+|+|||||||+|+.|++.++  +.+++.+++. +                  +...+.......+..++.
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~g--~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID   79 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhh
Confidence            467899999999999999999999999999  7889875552 1                  111122222223333332


Q ss_pred             --CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh---cC
Q 004319           77 --KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK---EL  150 (761)
Q Consensus        77 --~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~---e~  150 (761)
                        ..+.+|+|+.+.+..++..+.++ ........+|+|++|.+++.+|+.+|..... +..+.++ .+.+.+..+   ..
T Consensus        80 ~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~-~~~d~~e-~~~~Rl~~y~~~~~  157 (194)
T d1qf9a_          80 ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSG-RSDDNIE-SIKKRFNTFNVQTK  157 (194)
T ss_dssp             TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSC-CTTCSHH-HHHHHHHHHHHTHH
T ss_pred             hhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccc-cccccHH-HHHHHHHHHHHHHH
Confidence              34679999999999999888877 6666667899999999999999999876433 2223344 444333322   12


Q ss_pred             CC--ccCCceEEEEcCChhhHHHHH
Q 004319          151 PK--LSEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       151 P~--~~EgFd~V~vv~~~~ei~~~l  173 (761)
                      |.  ..+..+.+++++...+++++.
T Consensus       158 ~~~~~y~~~~~~~~Id~~~~ieeV~  182 (194)
T d1qf9a_         158 LVIDHYNKFDKVKIIPANRDVNEVY  182 (194)
T ss_dssp             HHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred             HHHHHHHhCCCEEEEECCCCHHHHH
Confidence            21  122334566666554555443

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.4e-12  Score=124.24  Aligned_cols=109  Identities=15%  Similarity=0.223  Sum_probs=85.5

Q ss_pred             cEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC---
Q 004319          577 DLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP---  653 (761)
Q Consensus       577 ~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p---  653 (761)
                      .+||+||.++||.|.+|.+++|+||||| +|+.++.+|+++++..|..+.+.+.+.+++.+...   .+++++|..|   
T Consensus        31 riV~e~~~~~a~~p~~p~~p~h~lIiPk-~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~---~~n~~~~~~p~~~  106 (156)
T d1z84a2          31 FVIDESSHFVSVAPFAATYPFEIWIIPK-DHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDP---PYNYMIHTSPLKV  106 (156)
T ss_dssp             EEEEECSSEEEEECTTCSSTTCEEEEES-SCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEEECCCTTC
T ss_pred             EEEEECCCEEEEEccCCCcCcEEEEEec-chhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCCC---cccHhhhcCCCCC
Confidence            5999999999999999999999999999 79999999999999999888888877777765443   3778888665   


Q ss_pred             -----cccceeeeeecCCccccccccccccccc--Cccccc---CHHHHHHHHHh
Q 004319          654 -----SMRQLHLHVISQDFNSKHLKNKKHWNSF--NTAFFC---DSVDVLEEISN  698 (761)
Q Consensus       654 -----Sv~HLHlHVIs~d~~s~~lk~kkH~nsF--~t~fFv---~~~~v~~~l~~  698 (761)
                           ++.|+|+|++.+      ++   .+..|  .|+.|+   .-+++.++|++
T Consensus       107 ~~~~~~~~H~hi~~~Pr------~~---~~aG~E~~tg~~~n~~~PE~~A~~LR~  152 (156)
T d1z84a2         107 TESQLPYTHWFLQIVPQ------LS---GVGGFEIGTGCYINPVFPEDVAKVMRE  152 (156)
T ss_dssp             CGGGGGGCCCEEEEEEC------CC---CCCHHHHHHSCCEESSCHHHHHHHHHH
T ss_pred             cccCceeEEEEEEecCC------CC---ccccceeecccccCCCCHHHHHHHHHh
Confidence                 568999999985      22   12233  234443   45677777754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.35  E-value=2.9e-12  Score=120.43  Aligned_cols=109  Identities=21%  Similarity=0.191  Sum_probs=82.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC----C---c-------HHHHHHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS----G---T-------KVQCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~----~---~-------~~~~~~~~~~~L~~g~~VIID   84 (761)
                      |..+|+|+|+|||||||+|++|++.++. ..+++.|.++....    .   .       .......+...+..+..+|+|
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid   79 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLD   79 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC-CEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3568999999999999999999999873 34567777753211    0   1       112335667778899999999


Q ss_pred             CCCCCHHHHHHHHHh--CCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           85 RCNLEREQRTDFVKL--GGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l--~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .+......+..+..+  ...+..+.+++|++|.+++.+|+.+|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~  125 (176)
T d2bdta1          80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (176)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             cccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCc
Confidence            988887776655444  55667788899999999999999999754

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.2e-12  Score=124.33  Aligned_cols=87  Identities=15%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             CcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccCCC--
Q 004319          576 DDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDASLAFRLGYHSAP--  653 (761)
Q Consensus       576 ~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~~~~~~~G~ha~p--  653 (761)
                      ..+||+||.++||.|.+|.+++|+||||| +|+.++.+|+++++..|.+++..+.+.+.+....++  .+++++|.+|  
T Consensus        33 ~RiV~e~e~~~af~~~~p~~p~h~lIiPk-~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~~~~--~y~~~~~~~p~~  109 (171)
T d1guqa2          33 SRTVVETEHWLAVVPYWAAWPFETLLLPK-AHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSF--PYSMGWHGAPFN  109 (171)
T ss_dssp             TTEEEECSSEEEECCTTCCSTTCEEEEES-SCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCC--CEEEEEECCCSS
T ss_pred             CeEEEECCeEEEEEcCCCCCcceEEEecc-hhcCChhhCCHHHHHHHHHHHHHHHHHHHHhccCCc--chhhhhhcCccc
Confidence            45999999999999999999999999999 899999999999999999988888877776654432  2566666554  


Q ss_pred             ----cccceeeeeecC
Q 004319          654 ----SMRQLHLHVISQ  665 (761)
Q Consensus       654 ----Sv~HLHlHVIs~  665 (761)
                          ++.|+|+||+.+
T Consensus       110 ~~~~~~~H~Hihi~Pr  125 (171)
T d1guqa2         110 GEENQHWQLHAHFYPP  125 (171)
T ss_dssp             SSCCTTCCCEEEEECC
T ss_pred             cCCCceeEEEEEEccC
Confidence                668999999985

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.26  E-value=4.7e-12  Score=119.73  Aligned_cols=115  Identities=15%  Similarity=0.028  Sum_probs=83.7

Q ss_pred             EEEEEcccccccccCCccccEEEeCCCCCCcCCCChhhHHHHHhhcHHHHHH---HHHhcCCCCCCCEEEecCCCCCCCC
Q 004319          345 FFTFVGDITRLYTGGGLCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVA---TAERAKSLYPGNSVIVPLPSTSPLC  421 (761)
Q Consensus       345 l~v~~GDIt~~~~~g~~~~daIVNaaN~~L~~~~gGV~~AI~~aAG~~l~~e---~~~~~~~~~~G~avvT~l~~~~~~~  421 (761)
                      |.+++||||+...   .++|+|||++|..+. +||||++||.+++|...++.   |++. +.+++|++++|+..      
T Consensus         2 i~~v~GDi~~~~~---~~~~~Ivh~~N~~~~-mG~GiA~ai~~~~p~~~~~~~~~~~~~-~~~~~G~~~~~~~~------   70 (154)
T d2fg1a1           2 ILYIKGDATAPIG---SGVKVITHICNDIGG-WGKGFVLALSKKWKMPEEAYRQWYKSQ-EEFTLGAVQFVNVE------   70 (154)
T ss_dssp             CEEEESCTTSCCS---SSCEEEEEEEETTCC-CCSTHHHHHHHHCSHHHHHHHHHHHHT-SSCSTTCEEEEEEE------
T ss_pred             eEEEeCccCCcCC---CCCCEEEEccCCCCc-ccchHHHHHHHHcCcHHHHHHHHhhhc-cCCCCCcEEEEECC------
Confidence            6789999998631   237999999999999 99999999999988644432   3332 67999999999831      


Q ss_pred             CCCCccEEEEecCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH----HHhhccccc
Q 004319          422 GREGVTHVIHVLGPNMNPRRPNCLDGDYVKGCEILRKAYTSLFEGF----LSIVRSQEK  476 (761)
Q Consensus       422 ~~l~~k~VIH~VGP~~~~~~~~~l~~~~~~~~~~L~~ay~~~L~~a----~siaf~~~~  476 (761)
                         ++.+|+|+++|.|.....+   .......+.|++|+++++..+    .|||+|.++
T Consensus        71 ---~~~~I~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~sIa~P~Ig  123 (154)
T d2fg1a1          71 ---NKLYVANMIGQHGIYKDSK---GLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIG  123 (154)
T ss_dssp             ---TTEEEEEEEEESSSSCCTT---CCCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTT
T ss_pred             ---CceEEEEEEeEeCCCCCcC---CccHHHHHHHHHHHHHHHHHHHhcCcEEEeCccc
Confidence               3489999999876443221   011223567888888776543    489999775

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.24  E-value=1.4e-11  Score=116.59  Aligned_cols=124  Identities=22%  Similarity=0.197  Sum_probs=89.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCC--------CcH--------HHHHHHHHHHHHCCCcEEE
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKS--------GTK--------VQCLTSASSALKKGKSVFL   83 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~--------~~~--------~~~~~~~~~~L~~g~~VII   83 (761)
                      ..||+|+|+|||||||+|+.|++.++.++.+++.|.++....        ...        ......+...+..+..+|+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   83 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVIL   83 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence            468999999999999999999999998888899887753211        111        1122455666788899999


Q ss_pred             eCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhcCCC
Q 004319           84 DRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKELPK  152 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e~P~  152 (761)
                      |+.. ....+..+.   ..+.....++|+++.+++.+|+.+|....     ....+.+..++..+..+.
T Consensus        84 ~~~~-~~~~~~~~~---~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-----~~~~~~~~~~~~~~~~~~  143 (176)
T d1zp6a1          84 DGVV-RPDWLPAFT---ALARPLHYIVLRTTAAEAIERCLDRGGDS-----LSDPLVVADLHSQFADLG  143 (176)
T ss_dssp             CSCC-CTTTTHHHH---TTCSCEEEEEEECCHHHHHHHHHTTCTTS-----CCCHHHHHHHHHHTTCCG
T ss_pred             cccc-cHHHHHHHH---hcccccccccCCCCHHHHHHHHHhCCCcc-----ccchhhHHHHHHHHhhcc
Confidence            9854 344444443   33455778999999999999999997642     334667777777765544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.18  E-value=1.6e-10  Score=108.85  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=75.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC------------------CCC-c-H-----HHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG------------------KSG-T-K-----VQCLTSASSA   74 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~------------------~~~-~-~-----~~~~~~~~~~   74 (761)
                      ..+|+|+|+|||||||+|+.|++.++..+.+++.|.+...                  ... . .     ......+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999987877776655210                  000 0 0     1112344555


Q ss_pred             HHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           75 LKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      +..+..+|++..................+..+..|+|++|.+++.+|+..|..+
T Consensus        83 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~  136 (178)
T d1qhxa_          83 ARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDR  136 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSS
T ss_pred             HhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCc
Confidence            677888898887766654443333312255677899999999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=2.3e-10  Score=111.34  Aligned_cols=149  Identities=15%  Similarity=0.304  Sum_probs=92.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC-------------------CCCCcHHHHHHH----HHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-------------------GKSGTKVQCLTS----ASS   73 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~-------------------~~~~~~~~~~~~----~~~   73 (761)
                      ++..+|+|+|+|||||||+|+.|++.++  +.+|+.+++ +.                   +...........    +..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g--~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   83 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS--CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC--CeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHh
Confidence            4556888899999999999999999999  888986443 21                   111111111111    222


Q ss_pred             H-HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc--
Q 004319           74 A-LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE--  149 (761)
Q Consensus        74 ~-L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e--  149 (761)
                      . ......+|+|+......++..+... ...+.   ++++++|.+++.+|...|....+ +. +...+.+.+.+..+.  
T Consensus        84 ~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~---~i~l~~~~e~~~~R~~~~~~~~~-r~-~~~~e~~~~r~~~y~~~  158 (196)
T d1ukza_          84 NVKANKHKFLIDGFPRKMDQAISFERDIVESKF---ILFFDCPEDIMLERLLERGKTSG-RS-DDNIESIKKRFNTFKET  158 (196)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSE---EEEEECCHHHHHHHHHHHHHHHC-CT-TCSHHHHHHHHHHHHHT
T ss_pred             hhccCCCceeeeccchhHHHHHHHHHhccccce---eeccCCCHHHHHHHHHhcccccc-cc-chHHHHHHHHHHHHHHH
Confidence            2 2234679999999998888877766 55544   88999999999999988865432 22 333455555444432  


Q ss_pred             -CCCc--cCCceEEEEcCChhhHHHHH
Q 004319          150 -LPKL--SEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       150 -~P~~--~EgFd~V~vv~~~~ei~~~l  173 (761)
                       .|..  .+.-..++.++.+.+++++.
T Consensus       159 ~~~l~~~y~~~~~~~~Id~~~s~eeV~  185 (196)
T d1ukza_         159 SMPVIEYFETKSKVVRVRCDRSVEDVY  185 (196)
T ss_dssp             THHHHHHHHTTTCEEEEECSSCHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence             2211  12223455566544554443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.12  E-value=5.2e-11  Score=115.43  Aligned_cols=105  Identities=23%  Similarity=0.295  Sum_probs=73.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHH----HHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCL----TSASSA   74 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~----~~~~~~   74 (761)
                      ++|..|+|+|+|||||||+|+.|++.++  +.+++.+.+..                   +.........    ......
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~~--~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   78 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP   78 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHC--CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHC--CcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhc
Confidence            3677899999999999999999999999  88898765521                   1111111111    111222


Q ss_pred             HHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ......+|+|+......+...+... ....   .+|+|++|.+++.+|+..|..
T Consensus        79 ~~~~~~~vid~~~~~~~q~~~l~~~~~~p~---~~i~L~~~~e~l~~R~~~~~~  129 (189)
T d1zaka1          79 DAQENGWLLDGYPRSYSQAMALETLEIRPD---TFILLDVPDELLVERVVFDDT  129 (189)
T ss_dssp             HHHHTCEEEESCCCSHHHHHHHHTTTCCCS---EEEEEECCHHHHHHHHTTTCC
T ss_pred             ccccCcEEeeccchhhHHHhhhhhcccccc---hheeechhhhhhhhhccccch
Confidence            2234579999999998887777555 3322   489999999999999977654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.3e-10  Score=109.76  Aligned_cols=124  Identities=16%  Similarity=0.363  Sum_probs=84.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-cC-------------------CCCCcHHHHHHHHHHHH----
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-NK-------------------GKSGTKVQCLTSASSAL----   75 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~~-------------------~~~~~~~~~~~~~~~~L----   75 (761)
                      |.+|+|.|+|||||||+|+.|++.++  +.+|+.+++ ++                   +...+.......+...+    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g--~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~   78 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTM   78 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC--CceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccc
Confidence            67899999999999999999999999  888986544 21                   11111111122222222    


Q ss_pred             ---HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           76 ---KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        76 ---~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                         .....+|+|+...+..+...+... ......-.+++++++.+++.+|..+|....+ +..+. .+.+.+.++.
T Consensus        79 ~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~-r~~~~-~e~i~~r~~~  152 (194)
T d1teva_          79 AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSG-RSDDN-RESLEKRIQT  152 (194)
T ss_dssp             HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSS-CCSCC-HHHHHHHHHH
T ss_pred             hhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCccc-CCccc-hHHHHHHHHH
Confidence               134679999999999888877766 5555555678899999999999999976543 33333 4444544433

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=2.2e-10  Score=110.09  Aligned_cols=142  Identities=13%  Similarity=0.184  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------------CCCCcHHHHHHHHHHHHH---CCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------------GKSGTKVQCLTSASSALK---KGK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------------~~~~~~~~~~~~~~~~L~---~g~   79 (761)
                      -|+|.|+|||||||+|+.|++.++  +.+++.+++..                   +...........+...+.   ...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g--~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccc
Confidence            378899999999999999999998  77888755421                   222222223333333332   345


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---CCCc-
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---LPKL-  153 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---~P~~-  153 (761)
                      .+|+|+......+...|... ...+. .-.+++|++|.+++.+|+..|.+..     +. ++++.+.++.|.   .|.. 
T Consensus        80 ~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~-----~~-~~~i~~rl~~y~~~~~~l~~  153 (181)
T d2cdna1          80 GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRAD-----DT-DDVILNRMKVYRDETAPLLE  153 (181)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTT-----CS-HHHHHHHHHHHHHHTTTHHH
T ss_pred             cEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccccccc-----ch-hHHHHHHHHHHHHHHHHHHH
Confidence            69999999999998888776 43334 3368899999999999999987642     33 455554444432   3321 


Q ss_pred             --cCCceEEEEcCChhhHHHHHH
Q 004319          154 --SEGFSRITLCQNENDVQAALD  174 (761)
Q Consensus       154 --~EgFd~V~vv~~~~ei~~~l~  174 (761)
                        .+   .+++++.+.+++++..
T Consensus       154 ~y~~---~~~~Id~~~s~eeV~~  173 (181)
T d2cdna1         154 YYRD---QLKTVDAVGTMDEVFA  173 (181)
T ss_dssp             HTTT---TEEEEECCSCHHHHHH
T ss_pred             HHhc---CeEEEECCCCHHHHHH
Confidence              22   3555665555555543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=2.6e-10  Score=111.01  Aligned_cols=150  Identities=22%  Similarity=0.332  Sum_probs=97.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHH-
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALK-   76 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~-   76 (761)
                      ..++.+|+|+|+|||||||+|+.|++.++  +.+|+.+++ +                  .+...+.+.....+..++. 
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g--~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG--YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVA   82 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC--CeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhh
Confidence            34678999999999999999999999999  888987554 1                  2333333444445555553 


Q ss_pred             ---CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhhc---
Q 004319           77 ---KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKKE---  149 (761)
Q Consensus        77 ---~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~e---  149 (761)
                         ..+.+|+|+...+..+...+... ....   .+++++++.+++.+|...|..... +.++.++ .+.+.++.|.   
T Consensus        83 ~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~-r~~d~~e-~i~~R~~~y~~~~  157 (194)
T d3adka_          83 KVDTSKGFLIDGYPREVKQGEEFERKIGQPT---LLLYVDAGPETMTKRLLKRGETSG-RVDDNEE-TIKKRLETYYKAT  157 (194)
T ss_dssp             TTTTCSCEEEESCCSSHHHHHHHHHHTCCCS---EEEEEECCHHHHHHHHHHHHHHHT-CCCCCST-THHHHHHHHHHHT
T ss_pred             cccccccceeeeccchhHHHHHHHHHhCCcc---chhccccchhhhHhHhhhhccccc-CCcchHH-HHHHHHHHHHHHH
Confidence               34569999999999988888776 4443   478899999999999887764332 2223333 3444333332   


Q ss_pred             CCC--ccCCceEEEEcCChhhHHHHH
Q 004319          150 LPK--LSEGFSRITLCQNENDVQAAL  173 (761)
Q Consensus       150 ~P~--~~EgFd~V~vv~~~~ei~~~l  173 (761)
                      .|.  ..+....+..++...+++++.
T Consensus       158 ~~~~~~y~~~~~~~~Id~~~s~~eV~  183 (194)
T d3adka_         158 EPVIAFYEKRGIVRKVNAEGSVDDVF  183 (194)
T ss_dssp             HHHHHHHTTTTCEEEEECCSCHHHHH
T ss_pred             HHHHHHHHhcCCEEEEECCCCHHHHH
Confidence            121  123334566666555555443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.7e-10  Score=109.23  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHH---CCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK---KGK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~---~g~   79 (761)
                      -|+|+|+|||||||+|+.|+++++  +.+++.+++.                   ++...+.......+...+.   ..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~--~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~   79 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN   79 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccccccc
Confidence            378899999999999999999998  7778865442                   1112222222333333332   235


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+|+|+.+.+..+...+.+. .....   +|+|++|.+++.+|+.+|..
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~~---vi~L~~~~~~l~~R~~~~~~  125 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVDY---VLEFDVPDELIVDRIVKDDQ  125 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSE---EEEEECCHHHHHHHHHTTCS
T ss_pred             ceeecccccchHHhhhhhhccCCceE---EEEeccchhhhhhhhccccc
Confidence            69999999998887777666 44443   89999999999999988864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.06  E-value=6.2e-10  Score=107.66  Aligned_cols=106  Identities=20%  Similarity=0.268  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc-cc------------------CCCCCcHHHHHHHHHHHHH---CCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT-IN------------------KGKSGTKVQCLTSASSALK---KGK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~-i~------------------~~~~~~~~~~~~~~~~~L~---~g~   79 (761)
                      -|+|+|+|||||||+|+.|+++++  +.+|+.++ ++                  .|...........+...+.   ...
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g--~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~~   82 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC--VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN   82 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccccC
Confidence            355789999999999999999999  88898744 32                  1222333333444444443   345


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CC-CCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GG-PEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~-~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                      .+|+|+.+....+...+.+. .. ......+++|++|.+.+.+|+..|..+.
T Consensus        83 g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~  134 (190)
T d1ak2a1          83 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHS  134 (190)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECC
T ss_pred             ceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCC
Confidence            69999999999888877665 32 2234567889999999999999998753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=2.9e-10  Score=110.61  Aligned_cols=107  Identities=20%  Similarity=0.257  Sum_probs=78.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCC-----C------C-c-----HHH----HHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGK-----S------G-T-----KVQ----CLTSASSAL   75 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~-----~------~-~-----~~~----~~~~~~~~L   75 (761)
                      |+||+|+|+|||||||+|++|++.++   .....++.|.++...     .      . .     ...    ....+...+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998764   456778888775210     0      0 0     001    112222223


Q ss_pred             --HCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           76 --KKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 --~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                        ..|..+|+|+++....+|..+.++ +..+..+.++.+.++.+.+.+++..+.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  135 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHHH
Confidence              345678999999999999999999 888888888888898888877766543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.05  E-value=4.1e-10  Score=111.71  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             cccCccEEEEEEcCCCCcHHHHHHHHHHHc----CCCeEEEecccccCCCC---C-c---HHH----HHHHHHHHHHCCC
Q 004319           15 EKKWKQILVIMVGAPGSGKSTFCEHVMRSS----ARPWARICQDTINKGKS---G-T---KVQ----CLTSASSALKKGK   79 (761)
Q Consensus        15 ~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~----~~~~~~I~~D~i~~~~~---~-~---~~~----~~~~~~~~L~~g~   79 (761)
                      ....++.+|+|+|+|||||||+|+.|.+.+    +....+++.|.++....   + +   +..    +...+......|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g~   98 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNS   98 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccCC
Confidence            455678999999999999999999998654    45678899999975432   1 1   111    2345566667899


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-------CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-------GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-------~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .+|++........|....++       +..+..+..||+++|.++|.+|..+|.
T Consensus        99 ~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          99 IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             ceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            99999999999999887764       235567889999999999999976664

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=1.2e-11  Score=121.12  Aligned_cols=110  Identities=9%  Similarity=0.062  Sum_probs=83.5

Q ss_pred             CCcchhhHHHHHHHHhhCCC-CCCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAP-SNTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (761)
                      +.....++.|++.+++.-.. .....|.+.       .|++.+++|.+++|++.|-|.... ....+++.++.|+. ..+
T Consensus        48 ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~-------vT~~~~L~~k~IiH~v~P~~~~~~-~~~~L~~~~~~~L~-~a~  118 (188)
T d1yd9a1          48 TLEKKGGKEFVEAVLELRKKNGPLEVAGAA-------VSAGHGLPAKFVIHCNSPVWGSDK-CEELLEKTVKNCLA-LAD  118 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCCTTCEE-------EEECTTSSSSEEEEECCCCTTSTT-HHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCCCee-------ecccCCCCceEEeeeccccCCCcc-hHHHHHHHHHHHHH-HHH
Confidence            45667788888888654222 122223343       578899999999999999987532 22335566666766 566


Q ss_pred             CCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 004319          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLG  312 (761)
Q Consensus       273 ~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~  312 (761)
                      ..+++|||||+||||+||||++.||+++++++++|+++..
T Consensus       119 ~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~  158 (188)
T d1yd9a1         119 DRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTM  158 (188)
T ss_dssp             HTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCT
T ss_pred             HcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999998753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.97  E-value=1.4e-09  Score=104.37  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc-c------------------CCCCCcHHHHHHHHHHHHH---CCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI-N------------------KGKSGTKVQCLTSASSALK---KGK   79 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i-~------------------~~~~~~~~~~~~~~~~~L~---~g~   79 (761)
                      .|+|+|+|||||||+|+.|+++++  +.+++.+++ +                  .+...+.......+..++.   ...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g--~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~   79 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG--TPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDN   79 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC--CceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccccc
Confidence            378999999999999999999999  777886444 2                  1222223333333344443   235


Q ss_pred             cEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcc
Q 004319           80 SVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        80 ~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      .+|+|+...+..+...+.+. ...+. ....+.++++.+.+.+|+..+.
T Consensus        80 ~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~  128 (182)
T d1s3ga1          80 GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADD  128 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTC
T ss_pred             ceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccc
Confidence            69999999999888887776 43443 3456789999999999975543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.91  E-value=4.5e-09  Score=102.21  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHH--HC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSAL--KK   77 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L--~~   77 (761)
                      +..-|+|+|+|||||||+|+.|+++++  +.+|+.+++.                   .+...+.+.....+.+.+  ..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g--~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE--LKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            334577889999999999999999999  8889975542                   122222222223333222  23


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           78 GKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        78 g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ...+|+|+.+.+..+...+-....   ...+|+|++|.+++.+|+..|.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~~~~~---~~~vi~L~v~~~~l~~R~~~r~  128 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALDRAYQ---IDTVINLNVPFEVIKQRLTDRP  128 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCC---CCEEEEEECCHHHHHHHHTGSH
T ss_pred             hcCcccccccchhhHHHHhhhcCc---ceEEEEEeccchhhhhhcccch
Confidence            456999999999888766533321   1247899999999999997764

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-10  Score=112.39  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=85.0

Q ss_pred             CCcchhhHHHHHHHHhhCCCC-CCCCCCcccCCCCCCCcccccccccccccccccccccccc-cccCCCCccccccccCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGE-EVKGTENPEVASVNQNG  271 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  271 (761)
                      +.....++.+++.+++.-... .-..|.+.       .|.+.++.|.+++|++.|-|..... ....+...++.|+. .+
T Consensus        35 ai~~~~G~~~~~~~~~~~~~~g~~~~g~~~-------~T~~~~l~~k~IiH~v~P~~~~~~~~~~~~l~~~~~~~L~-~a  106 (172)
T d1spva_          35 AIHRAAGPALLDACLKVRQQQGDCPTGHAV-------ITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLR-LV  106 (172)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHCSCCTTCEE-------EECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHcCCchHHHHHHHHHHhCCCCCCCEE-------EEEcCCCCCcEEEEeccccccCCchHHHHHHHHHHHHHHH-HH
Confidence            345566778888876643221 11123333       6778899999999999998875331 11113344445555 55


Q ss_pred             CCCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCC---eEEEEeccc
Q 004319          272 SSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGN---ARLVLVDLT  322 (761)
Q Consensus       272 ~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~---i~~v~vD~~  322 (761)
                      ...+++|||||+||||+||||++.||+++++++++|++..+.   ++||..|.+
T Consensus       107 ~~~~~~sIa~P~lgtG~~g~p~~~~a~~~~~ai~~fl~~~~~~~~V~~v~~d~~  160 (172)
T d1spva_         107 AANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEE  160 (172)
T ss_dssp             HHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHH
T ss_pred             HHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCccEEEEEECCHH
Confidence            667999999999999999999999999999999999998764   455554443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=3.1e-09  Score=102.04  Aligned_cols=103  Identities=16%  Similarity=0.187  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHH----CC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALK----KG   78 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~----~g   78 (761)
                      -|+|+|+|||||||+|+.|++.++  +.+|+.+++.                   .+...........+..++.    ..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g--~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            367889999999999999999999  8889876552                   1222222222233333333    34


Q ss_pred             CcEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcc
Q 004319           79 KSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        79 ~~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ..+|+|+...+..+...+..+ ...+. ...+|+|+++.+++.+|+..|.
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~  131 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNAD  131 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHH
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccc
Confidence            569999999999888877665 33333 3467899999999999987764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.87  E-value=3.6e-09  Score=100.83  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=71.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc-------------------CCCCCcHHHHHHHHHHHHHC---CCc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN-------------------KGKSGTKVQCLTSASSALKK---GKS   80 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~-------------------~~~~~~~~~~~~~~~~~L~~---g~~   80 (761)
                      |+|+|+|||||||+|+.|+++++  +.+|+.+++.                   .+...+.......+..++..   ...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~--~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG--IPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC--CCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            78999999999999999999999  7778876552                   12222222222333333332   356


Q ss_pred             EEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhccc
Q 004319           81 VFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +|+|+......+...+... ...+. ...+++|+++.+.+.+|...|..
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~  129 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDN  129 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccc
Confidence            9999988888777666655 33333 34678899999999999987754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.87  E-value=9.7e-10  Score=103.52  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------CCCC---cHHHHHHHHHHHHHCCCc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSG---TKVQCLTSASSALKKGKS   80 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------~~~~---~~~~~~~~~~~~L~~g~~   80 (761)
                      .+++..|+|+|+|||||||+|+.|+++++. +.+++.|.+..             ....   ....+...+...+..+..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN   80 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCC-CcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccc
Confidence            467788999999999999999999999862 45566555521             0011   112233555666778888


Q ss_pred             EEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           81 VFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        81 VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      +++|..+...        +.. .....+|||++|.+++.+|+.+|...
T Consensus        81 ~~~~~~~~~~--------~~~-~~~~~vI~L~~~~e~l~~Rl~~R~~~  119 (174)
T d1y63a_          81 HVVDYHSSEL--------FPE-RWFHMVVVLHTSTEVLFERLTKRQYS  119 (174)
T ss_dssp             EEEECSCCTT--------SCG-GGCSEEEEEECCHHHHHHHHHHTTCC
T ss_pred             ccccHHHHHH--------HHH-hcCceEEEEECCHHHHHHHHHhCCCc
Confidence            8998854421        111 11224789999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1e-08  Score=98.05  Aligned_cols=109  Identities=19%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccccCCCCC----cH-------HHHHHHHHHHHHCCCcEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTINKGKSG----TK-------VQCLTSASSALKKGKSVFLD   84 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~~~~~~----~~-------~~~~~~~~~~L~~g~~VIID   84 (761)
                      +..+|+|+|+|||||||+|+.|++.++   ....++..|.++.+...    ..       ......+...+..+..++++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            578999999999999999999999875   34455666665432211    11       11224556667888899999


Q ss_pred             CCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           85 RCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        85 ~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+.....+..+..+ ......+..+.+..+...+.+|..+|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  141 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY  141 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC--------------
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhh
Confidence            999999999988888 7777777777888888888877766644

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.82  E-value=1.4e-09  Score=103.52  Aligned_cols=98  Identities=21%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC----c------HH---HHHHHHHHHHHCCCcEEEeC--CC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG----T------KV---QCLTSASSALKKGKSVFLDR--CN   87 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~----~------~~---~~~~~~~~~L~~g~~VIID~--tn   87 (761)
                      |+|+|+|||||||+|+.|++.++  +.+++.|.+.+...+    .      +.   .+...+.........+++.+  ..
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg--~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   82 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALG--YEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGMV   82 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHT--CEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccccceecccccch
Confidence            67889999999999999999999  777998876321111    0      01   11122222233344455543  33


Q ss_pred             CCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           88 LEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        88 ~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .....|..+   +..+.   +|||++|.+++.+|+..|...
T Consensus        83 ~~~~~~~~l---~~~~~---~v~L~~~~e~l~~Rl~~~~~~  117 (170)
T d1e6ca_          83 LLEQNRQFM---RAHGT---VVYLFAPAEELALRLQASLQA  117 (170)
T ss_dssp             GSHHHHHHH---HHHSE---EEEEECCHHHHHHHHHHHHCS
T ss_pred             hhhHHHHhh---hccce---eEEEecCchhHHHHHhhcccc
Confidence            444444433   22333   889999999999999877553

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.79  E-value=1.4e-08  Score=102.29  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=88.9

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCc-------------------HHHHHHHHHHHHH
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGT-------------------KVQCLTSASSALK   76 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~-------------------~~~~~~~~~~~L~   76 (761)
                      ....|..|+|.|||||||||+|+.|+..++..+..++.|.++......                   ...........+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  107 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHh
Confidence            344688999999999999999999999998888999999986432210                   0011234456667


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           77 KGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        77 ~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .+.+.++|.++........+... ...++.+.+.+++.+.+++..|+..|..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~  159 (273)
T d1gvnb_         108 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE  159 (273)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCc
Confidence            78889999999888888888887 8888889999999999999999988853

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=2.2e-10  Score=112.28  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             Cccccccc---cccccccccccccccccc--ccCCCCccccccccCCCCCCCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319          230 QITEEKNS---CLEGQEITSLLSDAAGEE--VKGTENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (761)
Q Consensus       230 ~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v  304 (761)
                      .|++.+++   |.+++|+|.|-|.....+  ...+..-++.|+. ..+..+++|||||+||||+||||.++||+++++++
T Consensus        82 ~T~~~~L~~~~~k~ViH~v~P~~~~~~~~~~~~~L~~~~~~~L~-~A~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~ai  160 (192)
T d1vhua_          82 VTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLE-KAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAV  160 (192)
T ss_dssp             EEECGGGGGGTCCEEEEEECCCCTTCCCHHHHHHHHHHHHHHHH-HHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHH
T ss_pred             EEecccCCcccccEEEEEeeecccCCCcchhHHHHHHHHHHHHH-HHHHcCCcEEEecCccCCCCCCCHHHHHHHHHHHH
Confidence            67788886   789999999987753211  1113444455555 45557899999999999999999999999999999


Q ss_pred             HHHHHhcC-CeEEEEecccccc
Q 004319          305 EEFVNKLG-NARLVLVDLTQGS  325 (761)
Q Consensus       305 ~~f~~~~~-~i~~v~vD~~~~s  325 (761)
                      ++|.++.. .++||..|..++.
T Consensus       161 ~~f~~~~l~~V~~v~~~~~~~~  182 (192)
T d1vhua_         161 KNFKGSAVKEVALVIYDRKSAE  182 (192)
T ss_dssp             HHCCCSSCCEEEEEESSHHHHH
T ss_pred             HHhccCCcCEEEEEECCHHHHH
Confidence            99976543 3666666554444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=7.3e-09  Score=99.51  Aligned_cols=132  Identities=12%  Similarity=0.103  Sum_probs=76.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCe---EEEec-----------------ccc----cCCCCCcH----------HH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPW---ARICQ-----------------DTI----NKGKSGTK----------VQ   66 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~---~~I~~-----------------D~i----~~~~~~~~----------~~   66 (761)
                      .+|+|+|||||||||++++|.+.++...   .+..+                 +.+    ..+.+..+          -.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g~   82 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT   82 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccccc
Confidence            4799999999999999999998865211   11111                 111    00110000          00


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      ....+...+..|..+|+|.      .+..+..+ ......+.++++.++.+++.+|+.+|..       +..+++-.|+.
T Consensus        83 ~~~~~~~~~~~g~~~i~~~------~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~-------~~~e~I~~Rl~  149 (182)
T d1znwa1          83 LAQPVRAAAATGVPVLIEV------DLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGT-------ETADVIQRRLD  149 (182)
T ss_dssp             EHHHHHHHHHHTCCEEEEC------CHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSC-------SCHHHHHHHHH
T ss_pred             ccchhhhhhhcCCcccccc------ccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCc-------chHHHHHHHHH
Confidence            1145566777889999987      34444444 2233345556667788999999999975       33455444543


Q ss_pred             hhhcCCCccCCceEEEEcCC
Q 004319          146 QKKELPKLSEGFSRITLCQN  165 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~  165 (761)
                      ....+-.....||.|++-++
T Consensus       150 ~~~~e~~~~~~fD~vI~Ndd  169 (182)
T d1znwa1         150 TARIELAAQGDFDKVVVNRR  169 (182)
T ss_dssp             HHHHHHHGGGGSSEEEECSS
T ss_pred             HHHHHHhhHhcCCEEEECcC
Confidence            33222222455888876544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.72  E-value=3.6e-09  Score=99.99  Aligned_cols=96  Identities=14%  Similarity=0.073  Sum_probs=62.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCC-------------cHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSG-------------TKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~-------------~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      |+|+|+|||||||+|+.|++.++  +.+++.|.+-+...+             ........+...+.....+|+......
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~--~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~   80 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   80 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch
Confidence            78889999999999999999999  777888766211100             111222455566666666666553221


Q ss_pred             HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                       ..+..   +...++   +|||++|.+++.+|+..|..
T Consensus        81 -~~~~~---l~~~~~---vI~L~~s~~~l~~Rl~~~~~  111 (161)
T d1viaa_          81 -VNVSN---LEKAGF---CIYLKADFEYLKKRLDKDEI  111 (161)
T ss_dssp             -GGSTT---GGGGCE---EEEEECCHHHHTTCCCGGGT
T ss_pred             -hhHHH---HHhCCe---EEEeccchHHHHHHHccccc
Confidence             11111   133343   79999999999999877654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.7e-08  Score=99.56  Aligned_cols=133  Identities=14%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCC-CeEE-Ee---c----cc-------------c----cCCCCCcHHH--------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSAR-PWAR-IC---Q----DT-------------I----NKGKSGTKVQ--------   66 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~-~~~~-I~---~----D~-------------i----~~~~~~~~~~--------   66 (761)
                      .||+|+||+||||||+.++|.+.++. .+.. ++   +    ++             +    .+|.+..+..        
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt   82 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   82 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceecc
Confidence            48999999999999999999988652 2221 11   1    11             1    0111111100        


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHH
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRML  145 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~  145 (761)
                      -...+...+..|+.+|+|.      .+.....+ ......+.++++.++.+++.+|+.+|...       ..+.+..++.
T Consensus        83 ~~~~v~~~~~~g~~~ildi------d~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~-------~~~~i~~Rl~  149 (205)
T d1s96a_          83 SREAIEQVLATGVDVFLDI------DWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQD-------SEEVIAKRMA  149 (205)
T ss_dssp             EHHHHHHHHTTTCEEEEEC------CHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCS-------CHHHHHHHHH
T ss_pred             ccchHHHHHhcCCceeecC------cHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCc-------hHHHHHHHHH
Confidence            1145677889999999998      45545444 33344455666777889999999999763       3444555554


Q ss_pred             hhhcCCCccCCceEEEEcCCh
Q 004319          146 QKKELPKLSEGFSRITLCQNE  166 (761)
Q Consensus       146 ~~~e~P~~~EgFd~V~vv~~~  166 (761)
                      ....+-.....||.|++.++-
T Consensus       150 ~a~~E~~~~~~fD~vIvNddl  170 (205)
T d1s96a_         150 QAVAEMSHYAEYDYLIVNDDF  170 (205)
T ss_dssp             HHHHHHTTGGGSSEEEECSSH
T ss_pred             HHHHHHHHHhCCCEEEECcCH
Confidence            443333334459999886653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2.9e-08  Score=93.68  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=65.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC---CCC-----------CcHHHHHHHHHHHHHCCCcEEEeCC--
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK---GKS-----------GTKVQCLTSASSALKKGKSVFLDRC--   86 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~---~~~-----------~~~~~~~~~~~~~L~~g~~VIID~t--   86 (761)
                      |+|+|+|||||||+|+.|++.++.  .+++.|.+-.   |..           .-+......+...+.....+|+.+.  
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~--~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~~   81 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV--GLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA   81 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC--CEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC--CeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccccccccc
Confidence            456699999999999999999994  4577776521   111           0011111333444454555555432  


Q ss_pred             CCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           87 NLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        87 n~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      .+....|..+   . .+.   .|||.++.+++.+|+..|..++ .+......+.+.+++..
T Consensus        82 ~~~~~~~~~l---~-~~~---~I~L~~~~~~~~~R~~~~~~Rp-ll~~~~~~e~~~~l~~e  134 (165)
T d2iyva1          82 VTSPGVRAAL---A-GHT---VVYLEISAAEGVRRTGGNTVRP-LLAGPDRAEKYRALMAK  134 (165)
T ss_dssp             GGSHHHHHHH---T-TSC---EEEEECCHHHHHHHTTCCCCCS-STTSCCHHHHHHHHHHH
T ss_pred             cccccccccc---c-ccc---eeeeeccchhhhhcccccccch-hccCccHHHHHHHHHHH
Confidence            2222222211   2 223   6899999999999997665432 12234445566665543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.62  E-value=3.4e-08  Score=92.20  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=59.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccC-------------CCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINK-------------GKSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~-------------~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      |+|+|+|||||||+|++|+++++  +.+++.|.+..             ........+...+...... ...+++.....
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   83 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG--LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE-GGVIVDYHGCD   83 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHH-CCEEEECSCCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC--CcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhc-CCcccchhHHH
Confidence            67999999999999999999999  66677655521             1111233333444443333 33444443221


Q ss_pred             HHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           90 REQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        90 ~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      .-         .......+|+|++|.+++.+|+.+|...
T Consensus        84 ~~---------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~  113 (173)
T d1rkba_          84 FF---------PERWFHIVFVLRTDTNVLYERLETRGYN  113 (173)
T ss_dssp             TS---------CGGGCSEEEEEECCHHHHHHHHHHTTCC
T ss_pred             HH---------HHhcCCCcceecCCHHHHHHHHHhcCCC
Confidence            10         0111234789999999999999999753

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=98.57  E-value=3.2e-09  Score=101.69  Aligned_cols=108  Identities=11%  Similarity=-0.000  Sum_probs=75.3

Q ss_pred             CCcchhhHHHHHHHHhhCCCC-CCCCCCcccCCCCCCCcccccccccccccccccccccccccccCCCCccccccccCCC
Q 004319          194 NPDAKIQLGIMKFLKKVDAPS-NTGSTASSTQDPVPPQITEEKNSCLEGQEITSLLSDAAGEEVKGTENPEVASVNQNGS  272 (761)
Q Consensus       194 ~~~~~~~~~i~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (761)
                      +...+.++.|++.+++..... ....|.+.       .|+|.++ |++++|++.|.|+...     .++....|..   +
T Consensus        51 AI~~~aG~~l~~e~~~~~~~~g~~~~G~~v-------~t~g~~l-~k~IiH~v~P~~~~~~-----~~~ll~~~~~---~  114 (168)
T d2acfa1          51 ALNKATNGAMQKESDDYIKLNGPLTVGGSC-------LLSGHNL-AKKCLHVVGPNLNAGE-----DIQLLKAAYE---N  114 (168)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHCCCCTTCEE-------EEECTTT-CSEEEEECCCCGGGTC-----CTTHHHHHHH---G
T ss_pred             HHHHHhCHHHHHHHHHHHHhcCCCcCCCeE-------eccCcCc-chhheeecCCCccccc-----HHHHHHHHHH---h
Confidence            567778888988887664321 11122332       4666666 8899999999987522     1233344433   2


Q ss_pred             CCCCCeeecccccccCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Q 004319          273 SSDVPTLAFPSLSTSDFQFNNEKASDVIIEKVEEFVNKLGNARLVLVDLTQ  323 (761)
Q Consensus       273 ~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v~~f~~~~~~i~~v~vD~~~  323 (761)
                      ..+++|||||+||||+||||.+.||+++++++++      .+.+++.|.+.
T Consensus       115 ~~~~~sIA~PaigtG~~g~p~~~~a~~~~~~v~~------~V~fv~~d~~~  159 (168)
T d2acfa1         115 FNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKAL  159 (168)
T ss_dssp             GGGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHHH
T ss_pred             hccCceEEecccccCCCCCChHHHHHHHHHHHHH------hEEEEECCHHH
Confidence            3588999999999999999999999999999874      25666655433

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=6e-09  Score=106.53  Aligned_cols=83  Identities=11%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             Ccccccccccccccc---ccccccccc--ccccCCCCcccccccc--CCCCCCCCeeecccccccCCCCCHHHHHHHHHH
Q 004319          230 QITEEKNSCLEGQEI---TSLLSDAAG--EEVKGTENPEVASVNQ--NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIE  302 (761)
Q Consensus       230 ~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~  302 (761)
                      .++++|+.|.++.|+   +.|.|....  +......+.+..|+.+  +....+++||||||||||+||||.++||++++.
T Consensus       117 ~~~~~nl~~kyVIHaPTMv~P~~~~~~~~~~~~~~~~~l~~a~~~~L~a~e~~i~SIAfPaigTGvgg~p~~~aAr~m~~  196 (264)
T d1njra_         117 KTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAF  196 (264)
T ss_dssp             ----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCSTTCCCHHHHHHHHHH
T ss_pred             ccccccCCCCEEEECcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCccccCCCCcCHHHHHHHHHH
Confidence            345789999999998   555553211  1111111222222221  233569999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 004319          303 KVEEFVNKLG  312 (761)
Q Consensus       303 ~v~~f~~~~~  312 (761)
                      +|++|+.+.+
T Consensus       197 Ai~~fl~~~~  206 (264)
T d1njra_         197 ALRLYMAGDH  206 (264)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHHHHcCC
Confidence            9999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=9.7e-07  Score=85.26  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc---cCCC-------CCcHHH-----------------------HHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI---NKGK-------SGTKVQ-----------------------CLT   69 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i---~~~~-------~~~~~~-----------------------~~~   69 (761)
                      |+|+||+||||||++++|++.++..+...-...-   +.++       ..+...                       ...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            7899999999999999999987633321100000   0000       011110                       114


Q ss_pred             HHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhhh
Q 004319           70 SASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQKK  148 (761)
Q Consensus        70 ~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~~  148 (761)
                      .+...+..|..++++.      .......++.... .+.++++.++.+++.+|+.+|..       +..+.+-.|+.+..
T Consensus        83 ~v~~~~~~g~~~~~~~------~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~-------~~~e~i~~rl~~~~  149 (190)
T d1lvga_          83 AVRAVQAMNRICVLDV------DLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNT-------ETEESLAKRLAAAR  149 (190)
T ss_dssp             HHHHHHHTTCEEEEEC------CHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTC-------SCHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCceeecc------hHhhhhhhhhccccceEEEEecchHHHHHHHHhhccc-------cchHHHHHHHHHHH
Confidence            5567788999999988      3344444433333 34444555668999999999975       34455555554432


Q ss_pred             ---cCCCccCCceEEEEcCC
Q 004319          149 ---ELPKLSEGFSRITLCQN  165 (761)
Q Consensus       149 ---e~P~~~EgFd~V~vv~~  165 (761)
                         ........||.+++.++
T Consensus       150 ~~~~~~~~~~~fd~iI~N~d  169 (190)
T d1lvga_         150 TDMESSKEPGLFDLVIINDD  169 (190)
T ss_dssp             HHTTGGGSTTTCSEEEECSS
T ss_pred             HHHHhhhhcCCCCEEEECcC
Confidence               22222333787766554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.51  E-value=5.6e-08  Score=91.46  Aligned_cols=105  Identities=11%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEeccccc------CCC-------C-CcH------HHHHHHHHHHHHC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTIN------KGK-------S-GTK------VQCLTSASSALKK   77 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i~------~~~-------~-~~~------~~~~~~~~~~L~~   77 (761)
                      .+|+|.|+|||||||++++|++.++   ..+..++.++..      ...       . ...      ..........+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            4899999999999999999998765   234445433321      000       0 011      0111223344677


Q ss_pred             CCcEEEeCCCCCHHH-------HHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           78 GKSVFLDRCNLEREQ-------RTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        78 g~~VIID~tn~~~~~-------R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                      ++.+|+|+......+       ...+.....   ...+++|+++.+++.+|..+|..+
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~R~~~~~~~  136 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWVLNELN---PDLIIVVETTGDEILMRRMSDETR  136 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHHC---CSEEEEEECCHHHHHHHHHTSSSC
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhhhhhcc---ccceeeecCCHHHHHHHHHHhccc
Confidence            888999984432110       011111111   234789999999999999887654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.50  E-value=2.4e-08  Score=95.41  Aligned_cols=53  Identities=21%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             ccchhhhhhhhcccCccEEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc
Q 004319            4 DIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI   56 (761)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i   56 (761)
                      .++.-|......+...|.||.|.|++||||||+|++|.+.++   .....++.|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            344556666556777899999999999999999999988665   34445555554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.3e-07  Score=91.10  Aligned_cols=130  Identities=16%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCeE----EEe-----------------cccc----cCCCCCcHHH--------HHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARPWA----RIC-----------------QDTI----NKGKSGTKVQ--------CLT   69 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~~~----~I~-----------------~D~i----~~~~~~~~~~--------~~~   69 (761)
                      |+|+||+||||||++++|++.++..+.    +..                 .+.+    .++.+..+..        ...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            899999999999999999988653221    111                 1111    0111110000        124


Q ss_pred             HHHHHHHCCCcEEEeCCCCCHHHHHHHHHh-CCCCc-eEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           70 SASSALKKGKSVFLDRCNLEREQRTDFVKL-GGPEV-DVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        70 ~~~~~L~~g~~VIID~tn~~~~~R~~~~~l-~~~~~-~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      .+...+..|..+|+|.      .+..+..+ ..++. .+.++++..+.+++.+|+.+|..       +.++++-.|+...
T Consensus        84 ~i~~~~~~g~~~i~~~------~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~-------~~~~~I~~Rl~~~  150 (186)
T d1gkya_          84 SVKQVSKSGKTCILDI------DMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT-------ETEESINKRLSAA  150 (186)
T ss_dssp             HHHHHHHHTSEEEEEC------CHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSC-------SCHHHHHHHHHHH
T ss_pred             hHHHHhcCCCeEEecc------hHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhcc-------chhHHHHHHHHHH
Confidence            5567778899999987      34444444 33333 34456677889999999999976       3445555555443


Q ss_pred             h-cCCC-ccCCceEEEEcCC
Q 004319          148 K-ELPK-LSEGFSRITLCQN  165 (761)
Q Consensus       148 ~-e~P~-~~EgFd~V~vv~~  165 (761)
                      . +... ....||.|++-++
T Consensus       151 ~~e~~~~~~~~fd~vI~N~d  170 (186)
T d1gkya_         151 QAELAYAETGAHDKVIVNDD  170 (186)
T ss_dssp             HHHHHHHTTTCSSEEEECSS
T ss_pred             HHHHHhhhhcCCCEEEECcC
Confidence            2 1111 1223777766543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.7e-07  Score=89.22  Aligned_cols=116  Identities=17%  Similarity=0.272  Sum_probs=73.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC--------CeEEEecccccCCCC-------------------CcHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR--------PWARICQDTINKGKS-------------------GTKVQCLTSA   71 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~--------~~~~I~~D~i~~~~~-------------------~~~~~~~~~~   71 (761)
                      +|.||.|.|++||||||+|+.|++.++.        ...+++.|.+.....                   ...+.+.+.+
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL   80 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhh
Confidence            4889999999999999999999998762        356788887632110                   1112222332


Q ss_pred             HHHHHCC-------------------------CcEEEeCCCC-CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           72 SSALKKG-------------------------KSVFLDRCNL-EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        72 ~~~L~~g-------------------------~~VIID~tn~-~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      . .+..|                         ..+|+++... .......+.++        .||+++|.+++++|..+|
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~~l~~~~D~--------~i~v~~~~~~~~~R~~~R  151 (213)
T d1uj2a_          81 K-EITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQM--------KLFVDTDADTRLSRRVLR  151 (213)
T ss_dssp             H-HHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSE--------EEEEECCHHHHHHHHHHH
T ss_pred             h-hhhcCCcccccccccccccccCceEEecccceEEecchhhhccHHHHhhhhe--------eeeecCCHHHHHHHHHHH
Confidence            2 23332                         2367777543 22332334333        789999999999999999


Q ss_pred             ccccCCCCCCChHHHHHHHHh
Q 004319          126 IEHEGNLQGGKAAAVVNRMLQ  146 (761)
Q Consensus       126 ~~~~~~~~~~v~~~vI~r~~~  146 (761)
                      ....++   ..+++++..+.+
T Consensus       152 d~~~rg---~~~e~~~~~~~~  169 (213)
T d1uj2a_         152 DISERG---RDLEQILSQYIT  169 (213)
T ss_dssp             HHHHSC---CCHHHHHHHHHH
T ss_pred             HHHHcC---CCHHHHHHHHHH
Confidence            754432   455666555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.4e-07  Score=86.36  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCC---CCCc----------HHHHHHHHHHHHHCCCcEEEeCCCC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKG---KSGT----------KVQCLTSASSALKKGKSVFLDRCNL   88 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~---~~~~----------~~~~~~~~~~~L~~g~~VIID~tn~   88 (761)
                      .|+|+|+|||||||+|+.|+++++  +.+++.|.+...   ....          ..............+...++.....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~--~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC--CCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            488889999999999999999999  566777666321   1110          0111122333334444444444333


Q ss_pred             CHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccccCCCCCCChHHHHHHHHhh
Q 004319           89 EREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQGGKAAAVVNRMLQK  147 (761)
Q Consensus        89 ~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~~~v~~~vI~r~~~~  147 (761)
                      ....+.....+...   ...+++..+..++..|...|..+............+.+.+..
T Consensus        82 ~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (169)
T d1kaga_          82 SVKSRETRNRLSAR---GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANE  137 (169)
T ss_dssp             GGGSHHHHHHHHHH---SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHH
T ss_pred             hhhhhhhhHHhhhc---ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHH
Confidence            33222222222111   236788889999988887776554433334445555554444

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.33  E-value=5.5e-07  Score=83.88  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC----CCeEEEecccccC---CCC-CcHHH------HHHHHHHHHHCCCcEEE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----RPWARICQDTINK---GKS-GTKVQ------CLTSASSALKKGKSVFL   83 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~----~~~~~I~~D~i~~---~~~-~~~~~------~~~~~~~~L~~g~~VII   83 (761)
                      .+..+|+|+|+|||||||+|++|++.++    .....++.|..+.   ... .....      ........+.....+++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI   83 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhcccceee
Confidence            3458999999999999999999998875    2233445554431   111 11111      11122222333444444


Q ss_pred             eCCCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhc
Q 004319           84 DRCNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKR  125 (761)
Q Consensus        84 D~tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R  125 (761)
                      .........+...... ......+..++++.+......|...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
T d1m8pa3          84 AAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG  126 (183)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC
T ss_pred             cccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhh
Confidence            4444444444444433 44556677778888888777766444

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=6e-06  Score=80.29  Aligned_cols=107  Identities=20%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEec--------ccc----cCC------CCCcH-----------HHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQ--------DTI----NKG------KSGTK-----------VQCL   68 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~--------D~i----~~~------~~~~~-----------~~~~   68 (761)
                      .+|++-|+.||||||+++.|.+.+.   .....+..        +.+    ...      .....           ....
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE   82 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence            3688999999999999999987653   22222211        111    111      11111           0111


Q ss_pred             HHHHHHHHCCCcEEEeCCCCC------------HHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           69 TSASSALKKGKSVFLDRCNLE------------REQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn~~------------~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      ..+..++..|..||.|...++            ...-..+... ...-.+-.+|+|++|.+++.+|+.+|..
T Consensus        83 ~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~  154 (210)
T d4tmka_          83 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE  154 (210)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccc
Confidence            345677889999999973321            1222222222 1111123489999999999999999975

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.2e-06  Score=84.11  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec---c-----cc----cCCCCCc-H----------HHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ---D-----TI----NKGKSGT-K----------VQCLTSASSA   74 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~---D-----~i----~~~~~~~-~----------~~~~~~~~~~   74 (761)
                      .+|++.|+.||||||+++.|.+.+   +..+..+..   +     .+    ....... .          .+....+..+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   83 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEK   83 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHHHH
Confidence            589999999999999999998865   333433321   0     01    1111111 1          1112556778


Q ss_pred             HHCCCcEEEeCCCCCHHHH--------HHHHH-h-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCNLEREQR--------TDFVK-L-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~R--------~~~~~-l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      |..|..||+|...++.-..        ..++. + ...-.+=.+|+|++|.+++.+|...|..
T Consensus        84 l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~  146 (209)
T d1nn5a_          84 LSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE  146 (209)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C
T ss_pred             hhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc
Confidence            8999999999853322111        12222 2 2111122588999999999999766554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=3.6e-06  Score=81.24  Aligned_cols=154  Identities=18%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc--------c----cCCCC----CcHHH-----------HHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT--------I----NKGKS----GTKVQ-----------CLTSA   71 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~--------i----~~~~~----~~~~~-----------~~~~~   71 (761)
                      +|++.|+.||||||+++.|.+.+   +..+..+..-.        +    ..+..    .....           .....
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTI   81 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHhH
Confidence            78999999999999999998865   33444432110        0    01110    00000           11234


Q ss_pred             HHHHHCCCcEEEeCCCCCHHH--------------HHHHHHh----CCCCceEEEEEEeCCHHHHHHHHHhcccccCCCC
Q 004319           72 SSALKKGKSVFLDRCNLEREQ--------------RTDFVKL----GGPEVDVHAVVLDLPAKLCISRSVKRIEHEGNLQ  133 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn~~~~~--------------R~~~~~l----~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~~~~~  133 (761)
                      ......++.+|+|........              ...+..+    .....+-.+|+|++|.+++.+|+.+|.+......
T Consensus        82 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~  161 (208)
T d1gsia_          82 QGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRA  161 (208)
T ss_dssp             HHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhccccccc
Confidence            445567888999985332211              1111111    1112233688999999999999999975432211


Q ss_pred             CC---ChHHHHHHHHhhhcCCCccCCceEEEEcCChhhHHHHHHH
Q 004319          134 GG---KAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDT  175 (761)
Q Consensus       134 ~~---v~~~vI~r~~~~~e~P~~~EgFd~V~vv~~~~ei~~~l~~  175 (761)
                      .+   ...+...+..+.+..-.....-..+.+++...+++++...
T Consensus       162 ~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~  206 (208)
T d1gsia_         162 RDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAAT  206 (208)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHh
Confidence            11   1233333333322110001111246778877777766543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=1.2e-06  Score=83.94  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      .|.+|-|+|.+||||||+|+.| +.+|  +.+++.|.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g--~~~~~~D~~   36 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWG--YPVLDLDAL   36 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTT--CCEEEHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCC--CeEEEccHH
Confidence            4789999999999999999988 5677  566777765

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.11  E-value=4.4e-06  Score=78.41  Aligned_cols=106  Identities=18%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecccc------cCCCCC---------cHHH------HHHHHHHHH-
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQDTI------NKGKSG---------TKVQ------CLTSASSAL-   75 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D~i------~~~~~~---------~~~~------~~~~~~~~L-   75 (761)
                      .+|++.|+|||||||+++.|++.++   ..+.+++.++.      +.....         ....      ....+.+.. 
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            4789999999999999999998875   34555553221      111111         0111      111122221 


Q ss_pred             -HCCCcEEEeCCCCCHH-------HHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhccccc
Q 004319           76 -KKGKSVFLDRCNLERE-------QRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEHE  129 (761)
Q Consensus        76 -~~g~~VIID~tn~~~~-------~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~~  129 (761)
                       .....+|+|+..+...       ....+.....   ...+++|++|.+++.+|+.+|..+.
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~R~~~r~~~~  140 (194)
T d1nksa_          82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN---PSVIFLLEADPKIILSRQKRDTTRN  140 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC---CSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred             HhCCCcEEEEccCchHHHHHHHHhHHHHHHhhhc---cccceEEecCHHHHHHHHHHhhhcc
Confidence             2334466665222110       0011111111   2247899999999999999887653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.07  E-value=2.4e-06  Score=83.24  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ..+|-|+|.+||||||+|+.+. ++|  +.+++.|.+
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~G--~~vidaD~i   35 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DLG--VPLVDADVV   35 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TTT--CCEEEHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCC--CeEEEchHH
Confidence            4678899999999999998775 678  666888876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.03  E-value=1.1e-05  Score=77.01  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+|.+|++.|+.||||||+++.|.+.++
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446789999999999999999999998886

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5.5e-06  Score=80.85  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ++.+|.|+|.+||||||+|+.+. ++|  +.+++.|.+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~G--~~vidaD~i   36 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DLG--INVIDADII   36 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HTT--CEEEEHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HCC--CcEEEchHH
Confidence            56789999999999999998764 778  778888777

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9.8e-06  Score=77.38  Aligned_cols=89  Identities=16%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeE---------------------EEeccccc----CCCCCcHHH--------
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWA---------------------RICQDTIN----KGKSGTKVQ--------   66 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~---------------------~I~~D~i~----~~~~~~~~~--------   66 (761)
                      ..+|+|+||+||||||++++|.+.++..+.                     .++.+.+.    .+.+..+..        
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt   82 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGT   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceee
Confidence            457999999999999999999987642221                     12222110    111110000        


Q ss_pred             HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCC
Q 004319           67 CLTSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLP  114 (761)
Q Consensus        67 ~~~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p  114 (761)
                      ....+...+..|+.+|+|..      ...+..++.......+|++.+|
T Consensus        83 ~~~~i~~~~~~g~~~ildid------~~g~~~lk~~~~~~~~IfI~pp  124 (178)
T d1kgda_          83 KLETIRKIHEQGLIAILDVE------PQALKVLRTAEFAPFVVFIAAP  124 (178)
T ss_dssp             EHHHHHHHHHTTCEEEEECC------GGGHHHHSSTTTCEEEEEEECC
T ss_pred             eeecccchhccCceEEeccc------hhhhhhhhccccccceeeEecc
Confidence            11455678899999999872      2333334344445566777765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=3e-06  Score=88.12  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=34.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEeccccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTIN   57 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~   57 (761)
                      ....|.||-|+|++||||||||+.|...+.     .....|+.|.+.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            345689999999999999999999988763     456788999884

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.87  E-value=1e-05  Score=83.15  Aligned_cols=126  Identities=12%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCC------------------C-------CCcHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG------------------K-------SGTKVQCLTSA   71 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~------------------~-------~~~~~~~~~~~   71 (761)
                      +-||-++|.+||||||+++.|.+.+   +....+|+.|.+..-                  .       ....+.+ ...
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL-~~~   82 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKEL-ERV   82 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHH-HHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHH-HHH
Confidence            3389999999999999999887655   456778999988421                  0       0112222 222


Q ss_pred             HHHHHCC-----------------------------------CcEEEeCCCCCH----HHHHHHHHhCCCCceEEEEEEe
Q 004319           72 SSALKKG-----------------------------------KSVFLDRCNLER----EQRTDFVKLGGPEVDVHAVVLD  112 (761)
Q Consensus        72 ~~~L~~g-----------------------------------~~VIID~tn~~~----~~R~~~~~l~~~~~~v~vV~Ld  112 (761)
                      .+.|++|                                   ..+|++|...-.    ..-..+.++        -||++
T Consensus        83 l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~ir~~~Dl--------kIfVd  154 (288)
T d1a7ja_          83 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADL--------KIGVV  154 (288)
T ss_dssp             HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSE--------EEEEE
T ss_pred             HHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhhHhhcCe--------EEEEE
Confidence            3334433                                   235666632211    111122222        68999


Q ss_pred             CCHHHHHHHHHhcccccCCCCCC-ChHHHHHHH--HhhhcCCCcc
Q 004319          113 LPAKLCISRSVKRIEHEGNLQGG-KAAAVVNRM--LQKKELPKLS  154 (761)
Q Consensus       113 ~p~e~~~~R~~~R~~~~~~~~~~-v~~~vI~r~--~~~~e~P~~~  154 (761)
                      ++.++++.|-..|...+++++.+ +-+...++|  +.++..|...
T Consensus       155 ~d~dlrliRRI~RD~~eRG~s~E~V~~~i~rrmpdy~~yI~Pq~~  199 (288)
T d1a7ja_         155 PVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFS  199 (288)
T ss_dssp             ECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGG
T ss_pred             CCCCeEEEeeehhhhhhcCCCHHHHHHHHHhcchHHHHHHHHhhh
Confidence            99999999999999877775533 334444443  3356666653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.0001  Score=72.05  Aligned_cols=109  Identities=13%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec---c-----cc----cCCC--CCcHHH----------HHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQ---D-----TI----NKGK--SGTKVQ----------CLTSASSA   74 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~---D-----~i----~~~~--~~~~~~----------~~~~~~~~   74 (761)
                      +-.+|++-|+-||||||+++.|.+.+......+..   +     .+    .+..  ......          ....+...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~~   81 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD   81 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999988644433321   1     01    1111  111111          11346677


Q ss_pred             HHCCCcEEEeCCCCCHHH-----------HHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           75 LKKGKSVFLDRCNLEREQ-----------RTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        75 L~~g~~VIID~tn~~~~~-----------R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      +..|..||.|...++.-.           ...+..+ ...-.+=.+|+|++|++....|...|..
T Consensus        82 l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~  146 (214)
T d1tmka_          82 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD  146 (214)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCS
T ss_pred             HhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccch
Confidence            888999999984333211           1122222 2111122578899999888888665554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=5.8e-05  Score=76.17  Aligned_cols=62  Identities=21%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK   79 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~   79 (761)
                      ..|.-++|.||||+|||++|+.+++.++.++..++...+...+.+.....+..+.+..+...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~  104 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA  104 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHcC
Confidence            34677899999999999999999999998888888877776666665555555544444444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=2.6e-05  Score=72.18  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=28.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQD   54 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D   54 (761)
                      .+..|+++|+|||||||+|++|++.++  +.+++.+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~--~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhC--CCeEeee
Confidence            356799999999999999999999999  4555543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.46  E-value=2.8e-05  Score=75.42  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +.+|.+.|||||||||+|+.|+++++  +.|++..++
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg--~~~istGdl   37 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAM   37 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHH
Confidence            35677889999999999999999999  888996554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=8e-05  Score=74.66  Aligned_cols=67  Identities=21%  Similarity=0.300  Sum_probs=49.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCC--cEEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGK--SVFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~--~VIID~   85 (761)
                      .|.-|+|.||||+|||++|+.+++.++.++..++...+...+.+...+.+..+.+..+...  .++||.
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDe  109 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE  109 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEET
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            4567999999999999999999999998888888877776676666555555554444333  245564

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3.2e-05  Score=74.60  Aligned_cols=33  Identities=24%  Similarity=0.620  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      +|.+.|||||||||+|+.|+++++  +.||+..++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g--l~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CcEECHHHH
Confidence            788899999999999999999999  888986444

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.35  E-value=0.00042  Score=67.47  Aligned_cols=97  Identities=19%  Similarity=0.189  Sum_probs=58.0

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCCC--------------------CCcHHHHHHHH--
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKGK--------------------SGTKVQCLTSA--   71 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~~--------------------~~~~~~~~~~~--   71 (761)
                      ..++.+|+|+|++|+||||.+.+|+..+   +.....++.|.+|-+.                    ..+.......+  
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~   86 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE   86 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHH
Confidence            3457899999999999999999987554   4667788988885221                    01112222211  


Q ss_pred             HHHHHCCCcEEEeCCC---CCHHHHHHHHHh-CCCCceEEEEEEeC
Q 004319           72 SSALKKGKSVFLDRCN---LEREQRTDFVKL-GGPEVDVHAVVLDL  113 (761)
Q Consensus        72 ~~~L~~g~~VIID~tn---~~~~~R~~~~~l-~~~~~~v~vV~Ld~  113 (761)
                      ...+...+.++||...   .......++..+ +.....-..++++.
T Consensus        87 ~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a  132 (207)
T d1ls1a2          87 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA  132 (207)
T ss_dssp             HHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             HHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecc
Confidence            2334555678899844   334555555555 33333334555554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0012  Score=64.33  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=25.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSAR   46 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~   46 (761)
                      |.+|++-|+-||||||+++.|.+.++.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            789999999999999999999998863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.30  E-value=0.00048  Score=67.25  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ....|.+|+|+||+|+||||.+.+|+..+   +.....|+.|.+|
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            34579999999999999999988887554   3567888988885

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00029  Score=68.97  Aligned_cols=42  Identities=21%  Similarity=0.397  Sum_probs=34.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ...+|.+|+|+||+|+||||.+.+|+..+   +.....|+.|.+|
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            45689999999999999999988887543   4667888988885

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00059  Score=66.58  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=34.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTIN   57 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~   57 (761)
                      ....|.+|+|+||+|+||||.+.+|+..+   +.....|..|.+|
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            34578999999999999999999988543   4677888988885

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00027  Score=70.99  Aligned_cols=67  Identities=21%  Similarity=0.312  Sum_probs=46.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HCCCc-EEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKGKS-VFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~g~~-VIID~   85 (761)
                      .|.=++|.||||+|||+++++++...+.++..++...+...+.+.....+..+.+.. ....+ +++|.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDe  105 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  105 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCCeEEEehh
Confidence            455689999999999999999999999888778877776666665555444333333 33333 44555

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00025  Score=71.55  Aligned_cols=67  Identities=15%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHH-HCCCc-EEEeC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSAL-KKGKS-VFLDR   85 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L-~~g~~-VIID~   85 (761)
                      .+.-|+|.|+||+|||++++.++..++.++..++...+...+.+.....+..+.... ....+ ++||.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ide  108 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE  108 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHHHhcCCcceeHHh
Confidence            455699999999999999999999999888888877776666665555444443333 33333 44565

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=0.00045  Score=68.88  Aligned_cols=41  Identities=27%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCC
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK   60 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~   60 (761)
                      +.=|+|.||||+|||++|+.++..++.++..++.-.+..+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~   80 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF   80 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccc
Confidence            45588999999999999999999999888777653333333

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.08  E-value=0.0025  Score=66.02  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .|.|-|+-||||||+++.|++.+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            388999999999999999987664

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00039  Score=68.12  Aligned_cols=64  Identities=17%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLE   89 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~   89 (761)
                      .-++|.||||+||||+|+.+++.++..+..++.-.+     .........+.+.+..+..+++|.....
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~iDe~~~~   99 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI-----EKPGDLAAILANSLEEGDILFIDEIHRL   99 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTC-----CSHHHHHHHHHTTCCTTCEEEEETGGGC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcc-----ccchhhHHHHHhhccCCCeeeeeccccc
Confidence            347799999999999999999999977766664333     1222233334444455666778764433

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.98  E-value=0.00075  Score=65.67  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccccCC
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTINKG   59 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i~~~   59 (761)
                      .++|.+|+|+||+|+||||.+.+|+..+   +.....|+.|.+|-+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence            3567899999999999999988887543   467788999988643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.92  E-value=0.0017  Score=59.71  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      |+|+|+|||||||+++.++..++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            79999999999999999998765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00054  Score=66.60  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+|++-|+.||||||+++.|++.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5899999999999999999998775

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00026  Score=64.73  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      +|.++|+||||||||+++|++.+   +.....+..|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            78999999999999999998764   334555555543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.82  E-value=0.0071  Score=62.67  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ....|++-|+-||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            456799999999999999999998865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.75  E-value=0.001  Score=68.88  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=47.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDR   85 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~   85 (761)
                      ++++.|+||+|||.+|+.|+.+.+  .++..++..++...+.+..+..++.+.+.++....++||-
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DE  190 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS  190 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeeh
Confidence            566689999999999999999875  4566677777777788877776666555555555566665

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.74  E-value=0.00034  Score=64.42  Aligned_cols=68  Identities=7%  Similarity=-0.056  Sum_probs=40.0

Q ss_pred             ccccccccccccccc-cccc-ccCCCCcccccccc--CCCCCCCCeeecccccccCCCCCHHHHHHHHHHHH
Q 004319          237 SCLEGQEITSLLSDA-AGEE-VKGTENPEVASVNQ--NGSSSDVPTLAFPSLSTSDFQFNNEKASDVIIEKV  304 (761)
Q Consensus       237 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~~~SiafPaIStg~~gfp~~~aa~i~~~~v  304 (761)
                      .|-++.|.+++-+.. .... ....-+.++.|+..  .....+..|||||+||||++|||++++++++.+++
T Consensus        71 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~sIa~P~Ig~Gi~G~~w~~v~~ii~~~~  142 (154)
T d2fg1a1          71 NKLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLAGGKWELMEQIIKEEL  142 (154)
T ss_dssp             TTEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCSTTCCCHHHHHHHHHHHT
T ss_pred             CceEEEEEEeEeCCCCCcCCccHHHHHHHHHHHHHHHHHHHhcCcEEEeCcccCCCCCCCHHHHHHHHHHHh
Confidence            456777777765432 1111 11111224444431  00012457999999999999999999999865544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.001  Score=64.79  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      -+++.||||+||||+|+.+++.++..+..++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~   68 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSG   68 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcccccC
Confidence            47799999999999999999999976666554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.00096  Score=65.43  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccc
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDT   55 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~   55 (761)
                      +.+..++|.||||+||||+|+.+++.++..+..++...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~   87 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD   87 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence            34457899999999999999999999986666666533

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0017  Score=66.07  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc------CCCeEEEeccccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS------ARPWARICQDTIN   57 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~------~~~~~~I~~D~i~   57 (761)
                      ....|.||-|.|++||||||++..|...+      ......++.|+++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            34468999999999999999998876543      2346677888873

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0013  Score=67.56  Aligned_cols=39  Identities=15%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      +|.-++|+||||+|||++|+++++.++.++..++.-.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            345678899999999999999999999888888876663

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.26  E-value=0.011  Score=61.14  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .|.+-|+-||||||+++.|.+.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00097  Score=61.02  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .|+|+|+||+||||+++++++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.09  E-value=0.0023  Score=61.81  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC--CCeEEEecc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA--RPWARICQD   54 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~--~~~~~I~~D   54 (761)
                      .+|+++|++|||||||.++|.+.+.  +....|+.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            3799999999999999999987553  445566644

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.01  E-value=0.02  Score=49.07  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=66.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEEeCCCCCH----------
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFLDRCNLER----------   90 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VIID~tn~~~----------   90 (761)
                      ++|+|-||-.|=|||+|.+|.+++.  +.+|-...+.-...+ .+.+++ -.+.|....+||||...+.-          
T Consensus         1 tliilegpdccfkstvaaklskelk--ypiikgssfelaksg-neklfe-hfnkladednviidrfvysnlvyakkfkdy   76 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELK--YPIIKGSSFELAKSG-NEKLFE-HFNKLADEDNVIIDRFVYSNLVYAKKFKDY   76 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHT--CCEEECCCHHHHHHC-HHHHHH-HHHHHTTCCSEEEESCHHHHHHHTTTBSSC
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhc--CceecCchhhhhhcc-CHHHHH-HHHhhccccceeeehhhhhhhHHHhhcccc
Confidence            4799999999999999999999988  444544332100001 112222 23556778899999843221          


Q ss_pred             ----HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcccc
Q 004319           91 ----EQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRIEH  128 (761)
Q Consensus        91 ----~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~~~  128 (761)
                          +...++++- .-.....++||..++.++.+|++-|.++
T Consensus        77 silterqlrfied-kikakakvvylhadpsvikkrlrvrgde  117 (164)
T d2axpa1          77 SILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVRGDE  117 (164)
T ss_dssp             CCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHHTCS
T ss_pred             eehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhcccccc
Confidence                112233332 1122345899999999999999999874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.99  E-value=0.0021  Score=62.79  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe-cccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARIC-QDTI   56 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~-~D~i   56 (761)
                      .+|.|+|..||||||+|+.|.+.+|  +.+++ .|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g--~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC--CeEEcccHHH
Confidence            3789999999999999999999988  88887 5655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0024  Score=61.74  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=52.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCC-----eEEEecccccCCCCCcHHHHHHHHHHHHH--------CCCcEEEeC-CCC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSARP-----WARICQDTINKGKSGTKVQCLTSASSALK--------KGKSVFLDR-CNL   88 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~~-----~~~I~~D~i~~~~~~~~~~~~~~~~~~L~--------~g~~VIID~-tn~   88 (761)
                      ++|.||||+||||+|+.++++++..     +..++.-+.     ...............        ..+.+|+|. -.+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~  113 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-----RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM  113 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-----CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcccccccccccccccc-----CCceehhhHHHHHHHhhccCCCcceEEEEEeccccc
Confidence            6789999999999999999875411     222222111     111112222222222        123578886 334


Q ss_pred             CHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhccc
Q 004319           89 EREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRIE  127 (761)
Q Consensus        89 ~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~~  127 (761)
                      .......++.. ........++....+...+...++.|-.
T Consensus       114 ~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~  153 (224)
T d1sxjb2         114 TAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA  153 (224)
T ss_dssp             CHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             chhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence            44444444444 4444445555666665555556655543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.91  E-value=0.0023  Score=42.36  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=24.7

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|.....|++|+.+|..
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccC
Confidence            78999999999999999999999976

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.70  E-value=0.0026  Score=58.43  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC---CCeEEEecc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA---RPWARICQD   54 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~---~~~~~I~~D   54 (761)
                      +|.++|.+|||||||+.+|...+.   .....|-.|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            678999999999999999987643   344445443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.0039  Score=67.25  Aligned_cols=39  Identities=15%  Similarity=0.436  Sum_probs=34.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      .|.-|+|+||||||||.+|+.|++.++.||+.++...+-
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fT   86 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceee
Confidence            456799999999999999999999999999888876663

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.58  E-value=0.05  Score=52.22  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++|.|++|||||.++.+++..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0059  Score=58.70  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++|.|+||+||||+++.+++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67899999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.46  E-value=0.014  Score=56.43  Aligned_cols=38  Identities=13%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      ...+++|.|++|+||||+++++++..+..+..++....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~   65 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF   65 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccc
Confidence            34578899999999999999999988866666654333

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0036  Score=43.20  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=25.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRAP  740 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~~  740 (761)
                      .|.+|..|++.|.....|++|+++|...
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             ccccCCCCCCcccChHHHHHHccccCCc
Confidence            4899999999999999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.27  E-value=0.004  Score=60.20  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .++|.||||+||||+|+.+++.+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998753

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.05  E-value=0.04  Score=52.39  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           69 TSASSALKKGKSVFLDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        69 ~~~~~~L~~g~~VIID~tn~~~~~R~~~~~l~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ..+...+..|+.+|+|..      ......++.......+||+.+|.-..+.|+.+|.
T Consensus        89 ~~i~~~~~~gk~~lldid------~~g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~  140 (199)
T d1kjwa2          89 QSVREVAEQGKHCILDVS------ANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI  140 (199)
T ss_dssp             HHHHHHHHTTCEEEECCC------TTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTS
T ss_pred             eEEEehhcCCCccccccc------chHHhhhhhhccceeEEeeccccHHHHHhhhccc
Confidence            566778899999999872      2233333112233457888876544444554443

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0031  Score=41.32  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|.+|..|++.|..-..|+.|+++|.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            48899999999999999999999885

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.97  E-value=0.0058  Score=64.06  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      ..+++..+++.||||+|||+||+.++..++..+..++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            4456678999999999999999999999996555454

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0091  Score=39.35  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=24.5

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|..|++.|..-..|+.|+.+|..
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCC
Confidence            78999999999999999999999975

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.019  Score=50.54  Aligned_cols=55  Identities=5%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC-----CCeEEEecccccCCCCCcHHHHHHHHHHHHHCCCcEEE
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA-----RPWARICQDTINKGKSGTKVQCLTSASSALKKGKSVFL   83 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~-----~~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~g~~VII   83 (761)
                      ..|++.|++||||||+|++|...+.     +++..++.|.++        ++...+.+..+.|..+|+
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~--------ri~fva~e~~k~G~~~iv   66 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT--------ELLSLIQDFIGSGSGLII   66 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH--------HHHTTHHHHHHTTCEEEE
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH--------HHHHHHHHHHhcCCEEEE
Confidence            5799999999999999999987652     566666665431        122334444556665554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.01  Score=39.43  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=24.5

Q ss_pred             Cccccc--CCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHR--CRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~--C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |.+|.+  |++.|.....|++|+++|..
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            789999  99999999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.78  E-value=0.0078  Score=58.42  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=24.3

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..+..++|.|+||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3456789999999999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.0085  Score=57.61  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ++|.||||+||||+++.+++++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.031  Score=55.89  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC----------CCeEEEeccccc--CCCCCcHHHHHHHHHHHHHCCCc-E-EE
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTIN--KGKSGTKVQCLTSASSALKKGKS-V-FL   83 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~----------~~~~~I~~D~i~--~~~~~~~~~~~~~~~~~L~~g~~-V-II   83 (761)
                      ....-++|+|+||.|||++++.++....          ..+..++...+-  -...+.+++.+..+...+..... + +|
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfi  116 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI  116 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEE
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEe
Confidence            3445688999999999999999987521          122223333332  24467788777766666655444 3 34


Q ss_pred             eC
Q 004319           84 DR   85 (761)
Q Consensus        84 D~   85 (761)
                      |.
T Consensus       117 De  118 (268)
T d1r6bx2         117 DE  118 (268)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.45  E-value=0.065  Score=49.75  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      .|.|+|.||+|||||.++|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            488999999999999999973

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.0076  Score=58.55  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -++|.|+||+||||+|+.+++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            37899999999999999999875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.017  Score=59.11  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      ..++++||||+|||.+|+.|++.++.++.+++.-.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~   89 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM   89 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEecccccc
Confidence            3788999999999999999999999888888765553

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.0084  Score=40.74  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=25.2

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.....|+.|.++|..
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CCeeCCCCCCEeCchHHhHhhccccCC
Confidence            489999999999999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.011  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.+++|.|+|||||||||.+++...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.34  E-value=0.008  Score=58.70  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +++++|+||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            56678999999999999998875

>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: CDH-like
domain: CDP-diacylglycerol pyrophosphatase CDH
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.024  Score=54.60  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCcEEEEecCCCCCCceEEEEeCCCCCCChhc
Q 004319          574 HKDDLLEISDDVVVLNDLYPKAQKHILVLSRFDGLDRLAD  613 (761)
Q Consensus       574 ~p~~vvyedd~~vai~D~~Pka~~H~LVIPk~~hi~~l~d  613 (761)
                      .|+..|-.+..+++|+|+  ..+.|+||||. ..|+.+.+
T Consensus        23 ~pC~~Vd~~~gyvvlKD~--~G~~qyLliPt-~rIsGIEs   59 (220)
T d2pofa1          23 SPCAEVKPNAGYVVLKDL--NGPLQYLLMPT-YRINGTES   59 (220)
T ss_dssp             TTSSEEETTTTEEEEECS--SSSSCEEEEES-SCCCSTTC
T ss_pred             CCCeeEecCCCEEEEeCC--CCCceEEEeec-ccccCccC
Confidence            567888888899999995  78899999999 56777654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.0076  Score=38.69  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=23.0

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhc
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSC  737 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~  737 (761)
                      .|.+|..||+.|..-..|.+|.++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            3789999999999999999999886

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.053  Score=51.64  Aligned_cols=108  Identities=12%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcCCC----eE--EEe-----------ccccc-----CCCCCcHHHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSARP----WA--RIC-----------QDTIN-----KGKSGTKVQCLTSASSAL   75 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~~~----~~--~I~-----------~D~i~-----~~~~~~~~~~~~~~~~~L   75 (761)
                      .-|-.+++.|+||+||||+|+.+++.+.-.    ..  ..+           .|.+.     .+.....++. +.+.+.+
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~i-r~l~~~~  100 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAV-REVTEKL  100 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHH-HHHHHHT
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccchh-hHHhhhh
Confidence            346679999999999999999999865200    00  000           01010     0111122232 2233333


Q ss_pred             HC------CCcEEEeCC-CCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           76 KK------GKSVFLDRC-NLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        76 ~~------g~~VIID~t-n~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ..      .+.+|||.. .++......+++. .+....+.+|.+.-....+..-+..|-
T Consensus       101 ~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc  159 (207)
T d1a5ta2         101 NEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC  159 (207)
T ss_dssp             TSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             hhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhccee
Confidence            21      234777763 3455556677777 666666667776666655566565553

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.17  E-value=0.037  Score=50.79  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .|+|+|.||+|||||.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.10  E-value=0.017  Score=53.32  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      .+..+|+|.|.-|||||||++.+++.++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3567999999999999999999999987

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.01  Score=41.03  Aligned_cols=27  Identities=15%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..|++.|.....|+.|+++|+.
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            489999999999999999999999875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.018  Score=40.22  Aligned_cols=27  Identities=15%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|..||+.|.....|+.|..+|..
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CCEecCCCCceeeCHHHHHHhCccCCC
Confidence            499999999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.88  E-value=0.015  Score=51.69  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.||+|||||.++|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999754

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.0094  Score=39.62  Aligned_cols=26  Identities=15%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             Cccccc--CCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHR--CRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~--C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |.+|.+  |++.|.....||+|+++|..
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            789988  99999999999999999865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.73  E-value=0.019  Score=53.87  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -|+++|++|+||||+|..|.+. +  +..++.|.+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~-g--~~lv~DD~~   47 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR-G--HRLIADDRV   47 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT-T--CEEEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-C--CeEEecCeE
Confidence            4889999999999999998875 5  666776655

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.58  E-value=0.019  Score=55.25  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .-.+++|.|+|||||||||-+++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34699999999999999999998654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.013  Score=38.19  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             Cccccc--CCCCCCChHHHHHHHhhcC
Q 004319          714 ELRCHR--CRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       714 ~l~C~~--C~~~~~n~~~LK~Hl~~~~  738 (761)
                      |.+|..  |++.|.....||+|+++|.
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            789988  9999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.55  E-value=0.025  Score=54.34  Aligned_cols=35  Identities=17%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      +..+++|.|+|||||||||.+++...   +....+++.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            45799999999999999999998764   234445554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.019  Score=55.84  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      -|..++|.|+||+||||+|+.+++.+.
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            356789999999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.023  Score=55.10  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHc-CCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSS-ARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~-~~~~~~I~~   53 (761)
                      +++|.|..|||||||.+++.+.. +..+.+|-.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~~~~riaVI~N   37 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN   37 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEe
Confidence            68999999999999999998754 355666643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.26  E-value=0.021  Score=53.64  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      -|+++|++|+||||+|..|.+. +  +..++.|.+
T Consensus        17 gvli~G~sG~GKS~lal~l~~~-G--~~lvaDD~v   48 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK-N--HLFVGDDAI   48 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT-T--CEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc-C--CceecCCeE
Confidence            4789999999999999998764 5  666776655

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.07  E-value=0.03  Score=52.22  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEecccc
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTI   56 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i   56 (761)
                      =|+++|.+|+||||+|-.|.+. +  +..++.|.+
T Consensus        17 gvli~G~sg~GKS~la~~l~~~-g--~~li~DD~~   48 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR-G--HRLVADDNV   48 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT-T--CEEEESSEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc-C--CeEEeCCeE
Confidence            4899999999999999998876 5  566776665

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.017  Score=39.89  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|.+|..|++.|.....||.|+..++.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CCEeCCCCcccccchHHHHHHcccccC
Confidence            499999999999999999999876543

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.96  E-value=0.03  Score=38.88  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|..|..|++.|..-..|++|+++|-
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             cCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            49999999999999999999999874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.94  E-value=0.02  Score=54.51  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.+++|.|+|||||||||.+++..
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            359999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.075  Score=50.51  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=39.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC----------CCeEEEecccccCC--CCCcHHHHHHHHHHHH-HCC-Cc-EEE
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA----------RPWARICQDTINKG--KSGTKVQCLTSASSAL-KKG-KS-VFL   83 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~----------~~~~~I~~D~i~~~--~~~~~~~~~~~~~~~L-~~g-~~-VII   83 (761)
                      ...-++|+|+||.|||++++.|+...-          ..+..++...+-.|  ..+.+++.+..+...+ +.. .. .+|
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI  121 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI  121 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence            345689999999999999999987531          22223333333222  2345666555555444 443 33 366


Q ss_pred             eC
Q 004319           84 DR   85 (761)
Q Consensus        84 D~   85 (761)
                      |.
T Consensus       122 De  123 (195)
T d1jbka_         122 DE  123 (195)
T ss_dssp             ET
T ss_pred             ch
Confidence            76

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.037  Score=36.89  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             Ccccc--cCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCH--RCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~--~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |..|.  -|++.|.....|++|+.+|..
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            78996  599999999999999999875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.042  Score=56.44  Aligned_cols=29  Identities=31%  Similarity=0.316  Sum_probs=24.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+...+|-++|+||||||||..+|...+
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34578899999999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.68  E-value=0.029  Score=49.58  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.|++|||||..+|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.026  Score=35.52  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             cccccCCCCCCChHHHHHHHhhcCC
Q 004319          715 LRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       715 l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      -.|..||+.|-.-.+||+|...|.+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4799999999999999999998875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.61  E-value=0.027  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .=|+|+|.||||||||..+|...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34889999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.45  E-value=0.063  Score=54.98  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      ..+...+|-|+|+||+|||||..+|...+   +....++..|
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD   88 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   88 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence            44567899999999999999999998653   4455555543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.11  Score=51.61  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=26.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      .-.++.+.|+|||||||+|-.++...   +....+|+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            34699999999999999999987543   345556654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.042  Score=52.55  Aligned_cols=25  Identities=12%  Similarity=0.202  Sum_probs=22.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .-.+++|.|+||||||+||.+++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3469999999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.29  E-value=0.034  Score=49.51  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .=|+|+|.||+|||||.+++...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34899999999999999999764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.25  E-value=0.049  Score=36.55  Aligned_cols=27  Identities=22%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             CCccccc--CCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHR--CRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~--C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|.+  |++.|.....|++|+.+|..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4889988  99999999999999999975

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.15  E-value=0.035  Score=54.67  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.++.|+|++||||||+.+.+..-
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            358999999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.15  E-value=0.034  Score=54.66  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.+..-.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            467789999999999999998654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.08  E-value=0.052  Score=56.58  Aligned_cols=39  Identities=18%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEeccccc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTIN   57 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~D~i~   57 (761)
                      .+.-++|+||+|+|||-+|++|++.+..++..++.-.+-
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~  105 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLT  105 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhcc
Confidence            455689999999999999999999888778777765553

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.08  E-value=0.043  Score=52.00  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.+++|.|+||+|||||+..++...
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.036  Score=54.29  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.+..-.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34689999999999999999886543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.03  E-value=0.34  Score=49.28  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=56.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcCC--CeEEE-eccccc--CCCC------CcHHHHHHHHHHHHHCCCcEEEeCCCCCHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSAR--PWARI-CQDTIN--KGKS------GTKVQCLTSASSALKKGKSVFLDRCNLERE   91 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~~--~~~~I-~~D~i~--~~~~------~~~~~~~~~~~~~L~~g~~VIID~tn~~~~   91 (761)
                      |+++|++||||||+.+.|....+.  ....| +..++.  ....      .........+..+|+..-.+|+=+--...+
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR~~e  248 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSE  248 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCCSTH
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccCchh
Confidence            788999999999999999987663  23223 122221  0000      000112345566777776666656555555


Q ss_pred             HHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           92 QRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        92 ~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      ...-+..+ ..+..-+..+.- -+...+..|+..-.
T Consensus       249 a~~~l~a~~tGh~g~~tT~Ha-~s~~~a~~Rl~~l~  283 (323)
T d1g6oa_         249 AYDFYNVLCSGHKGTLTTLHA-GSSEEAFIRLANMS  283 (323)
T ss_dssp             HHHHHHHHHTTCSCEEEEECC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEEECC-CCHHHHHHHHHHhc
Confidence            54433333 444322333332 34566777886543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.035  Score=54.65  Aligned_cols=25  Identities=36%  Similarity=0.473  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..+.|+|++||||||+++.|..-+.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            5799999999999999999876543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.037  Score=50.39  Aligned_cols=21  Identities=38%  Similarity=0.748  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      -|+|+|.||+|||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999964

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.91  E-value=0.031  Score=50.61  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      +..=|+|+|.||+|||||..+|..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344588999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.89  E-value=0.033  Score=55.23  Aligned_cols=25  Identities=40%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -..+.|+|++||||||+++.|..-+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3589999999999999999987543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.88  E-value=0.033  Score=54.45  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      +-.++.|+|++||||||+.+.+..
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            345899999999999999987764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.86  E-value=0.024  Score=57.92  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ++|.|+||+||||+|+.++.-++
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            89999999999999999998765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.83  E-value=0.037  Score=49.94  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+++|.+|+|||||.++|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.034  Score=54.70  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.++.|+|++||||||+.+.+.--
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            368999999999999999988653

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=0.021  Score=37.51  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             Cccccc--CCCCCCChHHHHHHHhhcC
Q 004319          714 ELRCHR--CRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       714 ~l~C~~--C~~~~~n~~~LK~Hl~~~~  738 (761)
                      |.+|.+  |++.|.+...||+|+++|.
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            789988  9999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.046  Score=38.37  Aligned_cols=31  Identities=19%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             cCCcccccCCCCCCChHHHHHHHh-hcCCCCC
Q 004319          712 SMELRCHRCRSAHPSIPRLKSHIS-SCRAPFP  742 (761)
Q Consensus       712 ~~~l~C~~C~~~~~n~~~LK~Hl~-~~~~~~~  742 (761)
                      ..|.+|..||+.|.....|++|++ .|...=|
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            358999999999999999999987 5876544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.65  E-value=0.033  Score=54.41  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-.++.|+|++||||||+.+.++.-.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34589999999999999999998643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=91.63  E-value=0.047  Score=53.67  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      +-..+.|+|++||||||+.+.|..-+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34689999999999999999987543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.58  E-value=0.044  Score=53.88  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.+..-.
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3589999999999999999887543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.46  E-value=0.043  Score=50.20  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+|+|.|++|||||.++|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999974

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.043  Score=54.27  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+++.+..-+
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            3589999999999999999987544

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.21  E-value=0.036  Score=52.88  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.++.-+
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            478999999999999999997644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.19  E-value=0.051  Score=50.67  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .|+|+|.|++|||||.++|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4688999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.053  Score=48.99  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.||+|||||..++...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998853

>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.16  E-value=0.26  Score=45.72  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=47.9

Q ss_pred             CCceEEEEeCCCCCCChhcCCHHHHHHHHHHHHHHHHHHHHhhccCC----ceeeeecccCCCcccceeeeeecCCc
Q 004319          595 AQKHILVLSRFDGLDRLADVRNEHLQILQTMHAVGMKWAEKFLHEDA----SLAFRLGYHSAPSMRQLHLHVISQDF  667 (761)
Q Consensus       595 a~~H~LVIPk~~hi~~l~dl~~e~l~lL~~m~~~~~~~~~~~~~~~~----~~~~~~G~ha~pSv~HLHlHVIs~d~  667 (761)
                      .-.|-+||--..|-.++.+++.+++..+..+.   ++..+++....+    ..+-|-|.-++-|+.|-|..|++.+|
T Consensus        99 ~G~heVIi~sp~H~~~l~~~~~e~i~~v~~~~---~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a~p~  172 (173)
T d1z84a1          99 FGFHDVVIESPVHSIQLSDIDPVGIGDILIAY---KKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMALPV  172 (173)
T ss_dssp             BCEEEEEECCSSSSCCGGGSCHHHHHHHHHHH---HHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEEESS
T ss_pred             ccceeeEEeCccccCChhhCCHHHHHHHHHHH---HHHHHHHHcCCCceEEEEEeecCccCccCCCCCCeeeeeecc
Confidence            45677888665788999999998865443332   222223222211    23568899999999999999998776

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.07  E-value=0.044  Score=54.43  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=21.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      +-.++.|+|++||||||+++.+..-
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3458999999999999999998753

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.083  Score=32.53  Aligned_cols=26  Identities=19%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             CcccccCCCCCCChHHHHHHHhhcCC
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      |-+|..|++-|..--+||-|.++|..
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45899999999999999999998863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=90.95  E-value=0.33  Score=44.32  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      -|.++|.|.+|||||.++|..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.87  E-value=0.036  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .++.|+|++||||||+.+.+..-
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            58999999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.83  E-value=0.055  Score=54.37  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .++.|+|++||||||+.+.+...+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            479999999999999999997654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.80  E-value=0.06  Score=48.95  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+++|.+|+|||||.+++...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999999764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.074  Score=48.45  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.061  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+++|.||+|||||.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            788999999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.69  E-value=0.066  Score=50.34  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      .-.+++|.|.||+|||+||..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456999999999999999988653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.61  E-value=0.076  Score=48.21  Aligned_cols=25  Identities=16%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             CccEEEEEEcCCCCcHHHHHHHHHH
Q 004319           18 WKQILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        18 ~~~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      .+..=|+++|.||+|||||.+++..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999854

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.059  Score=49.67  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+|+|.+|+|||||++++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999999874

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.57  E-value=0.068  Score=54.46  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CccE-EEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecccc
Q 004319           18 WKQI-LVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDTI   56 (761)
Q Consensus        18 ~~~~-LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~i   56 (761)
                      .+|. +++++||+|+|||.+|+.|++.+   ...+..++.-.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            3454 78899999999999999999875   345656654333

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.51  E-value=0.11  Score=50.93  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH----cCCCeEEEec
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS----SARPWARICQ   53 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~----~~~~~~~I~~   53 (761)
                      -.+++|.|.||+|||||+..++..    .+.++.+++.
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~   72 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence            369999999999999999998743    2455666664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.48  E-value=0.063  Score=47.95  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.|++||||+.++|...
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999743

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.066  Score=48.74  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.41  E-value=0.085  Score=52.47  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ...+|.|+|+.|.||||+|+++...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.38  E-value=0.23  Score=49.36  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~   53 (761)
                      ...++.+.|+|||||||+|-.++...   +....+|+.
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            34699999999999999998876543   444555654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.30  E-value=0.069  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+++|.+|+|||||.+++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.29  E-value=0.22  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=27.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH---cCCCeEEEec
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS---SARPWARICQ   53 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~---~~~~~~~I~~   53 (761)
                      ...++.+.|++||||||+|..++..   .+..+.+|+.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            4469999999999999999987654   3445666765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.071  Score=48.69  Aligned_cols=21  Identities=33%  Similarity=0.692  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+++|.+|+|||||.+++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.18  E-value=0.072  Score=48.37  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.072  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.627  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.14  E-value=0.072  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|+||+||||+.++|...
T Consensus         3 V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           3 VLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.06  E-value=0.076  Score=47.88  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|++|+|||||..++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999999754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=89.96  E-value=0.064  Score=52.61  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.+.--.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3589999999999999999987654

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.13  Score=32.63  Aligned_cols=28  Identities=25%  Similarity=0.634  Sum_probs=25.1

Q ss_pred             cccccCCCCCCChHHHHHHHhhcCCCCC
Q 004319          715 LRCHRCRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       715 l~C~~C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      +.|+.|+++.++....|-|+..-+.++|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn~~p   30 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHNSLP   30 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             eechhHHHHHhhccCceEEEeecccCCc
Confidence            5899999999999999999987777676

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.082  Score=47.75  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.73  E-value=0.083  Score=47.44  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.074  Score=33.30  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=23.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|.+|..|...-..-..|+.|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            47899999999989999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.71  E-value=0.082  Score=48.61  Aligned_cols=21  Identities=29%  Similarity=0.649  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.59  E-value=0.071  Score=52.70  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -.++.|+|++||||||+.+.+.-.+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3589999999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.091  Score=47.62  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999854

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.092  Score=47.44  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=89.22  E-value=0.064  Score=48.85  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      ..=|+|+|.||+|||||.+++..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.17  E-value=0.065  Score=49.18  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVM   41 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~   41 (761)
                      +..=|+|+|.+|+|||||.+++.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.098  Score=47.38  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      -.|+|+|.|++|||||.++|...
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.096  Score=47.53  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      =|+|+|.+|+|||||.+++...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.12  E-value=0.51  Score=44.33  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHcCC------CeEEEecccccCCCCCcHHHHHHHHHHHHHC----C--CcEEEe
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSSAR------PWARICQDTINKGKSGTKVQCLTSASSALKK----G--KSVFLD   84 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~~~------~~~~I~~D~i~~~~~~~~~~~~~~~~~~L~~----g--~~VIID   84 (761)
                      ...+.-+++.|+||+||||+|..++.....      .+..+..    ++....-++..+ +.+.+..    |  +.+|||
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~----~~~~I~Id~IR~-i~~~~~~~~~~~~~KviIId   86 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP----EGENIGIDDIRT-IKDFLNYSPELYTRKYVIVH   86 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC----SSSCBCHHHHHH-HHHHHTSCCSSSSSEEEEET
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC----CcCCCCHHHHHH-HHHHHhhCcccCCCEEEEEe
Confidence            345778999999999999999999875421      1333322    222223333333 3344432    2  357775


Q ss_pred             C-CCCCHHHHHHHHHh-CCCCceEEEEEEeCCHHHHHHHHHhcc
Q 004319           85 R-CNLEREQRTDFVKL-GGPEVDVHAVVLDLPAKLCISRSVKRI  126 (761)
Q Consensus        85 ~-tn~~~~~R~~~~~l-~~~~~~v~vV~Ld~p~e~~~~R~~~R~  126 (761)
                      . -.++...-..+++. .+......++.+....+.+..=+.-|-
T Consensus        87 ~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC  130 (198)
T d2gnoa2          87 DCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRV  130 (198)
T ss_dssp             TGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             CccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcce
Confidence            5 55666666777777 665555666666555444444444443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.099  Score=47.37  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.073  Score=51.83  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      -.++.|+|++||||||+.+.+..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999988864

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.22  Score=48.31  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVM   41 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~   41 (761)
                      ..+++|.|+.+|||||+.|.++
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHH
Confidence            4579999999999999999965

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.1  Score=47.10  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.00  E-value=0.058  Score=53.47  Aligned_cols=24  Identities=38%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      ..+.|+|++||||||+.+.|..-+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            589999999999999999876543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.1  Score=46.82  Aligned_cols=21  Identities=19%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.78  E-value=0.11  Score=46.98  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.1  Score=48.52  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999999864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.11  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.1  Score=47.10  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+|+|.+|+|||||.+++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.18  Score=49.36  Aligned_cols=38  Identities=13%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEecc
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQD   54 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D   54 (761)
                      .++|.+|++.|--|.||||+|..|+..+   |.+...|+.|
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4678899999999999999988887553   4455566666

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=0.11  Score=47.33  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      =|+|+|.+|+|||||.+++...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.11  Score=46.96  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.49  E-value=0.13  Score=50.52  Aligned_cols=27  Identities=19%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             cCccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           17 KWKQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        17 ~~~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ...+.-|+|+|.||+||||+.+.|..+
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            345667899999999999999999854

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.12  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      .+.+|+|.||+|||||+..++..
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            47889999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.12  Score=47.24  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.18  E-value=0.13  Score=54.14  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCC---CeEEEeccccc---CCCC------CcHHHHHHHHHHHHHCCCcEEEeCC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSAR---PWARICQDTIN---KGKS------GTKVQCLTSASSALKKGKSVFLDRC   86 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~---~~~~I~~D~i~---~~~~------~~~~~~~~~~~~~L~~g~~VIID~t   86 (761)
                      ..=+|+++|++||||||....+......   .+.-|. |-+.   .+..      .........+..+|+..-.||+=+-
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igE  235 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE  235 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecC
Confidence            4469999999999999999998887642   222221 1110   0110      0111134666778888888888787


Q ss_pred             CCCHHHHHHHHHh-CCCCceEEEEEEeC-CHHHHHHHHHhc
Q 004319           87 NLEREQRTDFVKL-GGPEVDVHAVVLDL-PAKLCISRSVKR  125 (761)
Q Consensus        87 n~~~~~R~~~~~l-~~~~~~v~vV~Ld~-p~e~~~~R~~~R  125 (761)
                      -.+.......++. ..-+.-  +--+.+ +.-....|+..-
T Consensus       236 iRd~~ta~~a~~aa~tGhlV--~tTlHa~~a~~~~~Rl~~~  274 (401)
T d1p9ra_         236 IRDLETAQIAVQASLTGHLV--MSTLHTNTAVGAVTRLRDM  274 (401)
T ss_dssp             CCSHHHHHHHHHHHHTTCEE--EEEECCSSSHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHhcCCeE--EEEeccCchHhhhhhhhhc
Confidence            7777666666665 322221  222333 234466677654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=88.13  E-value=0.11  Score=50.91  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      +-.++-|+|++||||||+.+.+.....
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999876543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=88.12  E-value=0.13  Score=46.73  Aligned_cols=21  Identities=48%  Similarity=0.673  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.12  Score=46.77  Aligned_cols=20  Identities=40%  Similarity=0.698  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+|+|.+|+|||||.+++..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.94  E-value=0.36  Score=50.36  Aligned_cols=66  Identities=17%  Similarity=0.332  Sum_probs=35.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHc--C--------CCeEEEecccccC--CCCCcHHHHHHHHHHHHHC--CCc-EEEe
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRSS--A--------RPWARICQDTINK--GKSGTKVQCLTSASSALKK--GKS-VFLD   84 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~~--~--------~~~~~I~~D~i~~--~~~~~~~~~~~~~~~~L~~--g~~-VIID   84 (761)
                      +.-++|+|.||.|||+++..|+...  +        ..+..++...+-.  ...+.+++.+..+...+..  |.. ++||
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfid  122 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID  122 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEec
Confidence            3446888999999999998887642  1        1222233333322  2245666666555555543  333 3567


Q ss_pred             C
Q 004319           85 R   85 (761)
Q Consensus        85 ~   85 (761)
                      .
T Consensus       123 e  123 (387)
T d1qvra2         123 E  123 (387)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.83  E-value=0.095  Score=48.06  Aligned_cols=20  Identities=45%  Similarity=0.524  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |.|+|.|++|||||.++|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998853

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.14  Score=46.18  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.66  E-value=0.05  Score=48.60  Aligned_cols=21  Identities=33%  Similarity=0.721  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.|++|||||.++|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.14  Score=46.13  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      =|+|+|.+|+|||||.+++...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999998753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.14  Score=46.70  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.47  E-value=0.17  Score=46.55  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            799999999999999998764

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.098  Score=38.70  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhc
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSC  737 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~  737 (761)
                      .|..|..|++.|.+...|+.|+.+|
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4899999999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.28  E-value=0.15  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.22  E-value=0.13  Score=47.22  Aligned_cols=19  Identities=42%  Similarity=0.730  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVM   41 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~   41 (761)
                      |+|+|.+|+|||||..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999983

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.14  Score=32.26  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.9

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|.+|..|...-+|-.+|--||++|..
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            489999999999999999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.08  E-value=0.092  Score=47.81  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=8.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |+|+|.+|+|||||.++|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998874

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=87.08  E-value=0.083  Score=47.78  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      ..-|+|+|.|++|||||.++|..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45689999999999999999853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=0.11  Score=47.49  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~   42 (761)
                      |.|+|.|++||||+.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78899999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.86  E-value=0.16  Score=45.96  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.16  Score=46.09  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998743

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.35  E-value=0.23  Score=45.15  Aligned_cols=24  Identities=38%  Similarity=0.630  Sum_probs=20.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           20 QILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        20 ~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      ..=|.++|.+|+|||||.++|...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            355889999999999999999753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.29  E-value=0.22  Score=45.57  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHH
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      +..=|+|+|.+|+|||||.+++...
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            3445899999999999999998864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=86.26  E-value=0.21  Score=49.56  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=26.7

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..+++..+++.|+|++|||||+..+.+.++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            446778899999999999999999999887

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.03  E-value=0.55  Score=45.12  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVM   41 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~   41 (761)
                      .+++|.||.++||||+.+.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            378999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.89  E-value=0.19  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||.+++...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.2  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.13  Score=46.79  Aligned_cols=21  Identities=33%  Similarity=0.754  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+|||||..++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.35  E-value=0.2  Score=47.76  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|.+|+||||+.+++...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            799999999999999998654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.96  E-value=0.2  Score=47.69  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=25.9

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ..++..-+++.|||++|||+||..|.+-++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            346667889999999999999999998876

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.73  E-value=0.37  Score=46.85  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             ccCccEEEEEEcCCCCcHHHHHHHHHHHc---CCCeEEEeccc
Q 004319           16 KKWKQILVIMVGAPGSGKSTFCEHVMRSS---ARPWARICQDT   55 (761)
Q Consensus        16 ~~~~~~LIvLvG~PGSGKSTfA~~L~~~~---~~~~~~I~~D~   55 (761)
                      ..+...||+++|-=|+||||++-.|+..+   |.+...|+.|-
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45677899999999999999888776543   45566667663

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.65  E-value=0.33  Score=42.02  Aligned_cols=34  Identities=18%  Similarity=0.096  Sum_probs=25.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHHHHcCCCeEEEe
Q 004319           19 KQILVIMVGAPGSGKSTFCEHVMRSSARPWARIC   52 (761)
Q Consensus        19 ~~~LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~   52 (761)
                      +....+|.+++|||||+++-.+....+....++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence            4567899999999999998777766664444333

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=0.24  Score=51.14  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHH
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMR   42 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~   42 (761)
                      .+.+|.|+||+||||...++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHH
Confidence            4899999999999998876544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.52  E-value=0.21  Score=49.02  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=13.5

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEH   39 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~   39 (761)
                      ++|.|+|||||||.+-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            56779999999987543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.30  E-value=0.37  Score=44.87  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeEEEec
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRSSARPWARICQ   53 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~~~~~~~~I~~   53 (761)
                      |++++|...||||.||++++...+ +..+|-.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~-~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP-QVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS-SEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC-CcEEEEc
Confidence            579999999999999999975544 4455554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=83.95  E-value=0.25  Score=48.96  Aligned_cols=17  Identities=29%  Similarity=0.675  Sum_probs=13.8

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEH   39 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~   39 (761)
                      +++.|+|||||||.+-+
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            56779999999987644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.00  E-value=0.3  Score=47.23  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcC
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      ...+++|.+|+||||+.++|.....
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhh
Confidence            3678999999999999999975544

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.98  E-value=0.31  Score=44.38  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHc
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      |+|+|..|+||||+..++....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999997653

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.89  E-value=0.2  Score=34.29  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             ccccc--CCCCCCChHHHHHHHhhcCCCCC
Q 004319          715 LRCHR--CRSAHPSIPRLKSHISSCRAPFP  742 (761)
Q Consensus       715 l~C~~--C~~~~~n~~~LK~Hl~~~~~~~~  742 (761)
                      .+|..  |++.|..-..||+|+.+|...=|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            36876  99999999999999999987555

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.64  E-value=0.33  Score=44.38  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 004319           22 LVIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        22 LIvLvG~PGSGKSTfA~~L~~~   43 (761)
                      =|+++|.+|+|||||..++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=0.094  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      -+.+|+|+.||||||+..+|.-.+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            477899999999999999987554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.97  E-value=0.38  Score=43.52  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 004319           23 VIMVGAPGSGKSTFCEHVMRS   43 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~   43 (761)
                      |+|+|..|+||||+.+++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            799999999999999998754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.76  E-value=0.26  Score=31.18  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             CcccccCCCCCCChHHHHHHHhh
Q 004319          714 ELRCHRCRSAHPSIPRLKSHISS  736 (761)
Q Consensus       714 ~l~C~~C~~~~~n~~~LK~Hl~~  736 (761)
                      |..|.+|.+.|++-..|-.|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57899999999999999999985

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.62  E-value=0.39  Score=45.29  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHHHc
Q 004319           21 ILVIMVGAPGSGKSTFCEHVMRSS   44 (761)
Q Consensus        21 ~LIvLvG~PGSGKSTfA~~L~~~~   44 (761)
                      .-|.++|-+++|||||..+|....
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            458999999999999999997543

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.11  E-value=0.17  Score=36.80  Aligned_cols=27  Identities=19%  Similarity=0.360  Sum_probs=24.9

Q ss_pred             CCccccc--CCCCCCChHHHHHHHhhcCC
Q 004319          713 MELRCHR--CRSAHPSIPRLKSHISSCRA  739 (761)
Q Consensus       713 ~~l~C~~--C~~~~~n~~~LK~Hl~~~~~  739 (761)
                      .|..|.+  |++.|.....|+.|+.+|..
T Consensus        17 kpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             TEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             CCeECCcCCCCccccCchHHHhhcccccC
Confidence            5899988  99999999999999999876

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.91  E-value=0.36  Score=30.61  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             CCcccccCCCCCCChHHHHHHHhhcC
Q 004319          713 MELRCHRCRSAHPSIPRLKSHISSCR  738 (761)
Q Consensus       713 ~~l~C~~C~~~~~n~~~LK~Hl~~~~  738 (761)
                      .|..|..||+.|......|+|-+.|-
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            48999999999999999999998773

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.68  E-value=0.65  Score=45.06  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Q 004319           23 VIMVGAPGSGKSTFCEHVMRSSA   45 (761)
Q Consensus        23 IvLvG~PGSGKSTfA~~L~~~~~   45 (761)
                      |+|.|.+|+||+++|+.+.....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCcCHHHHHHHHHHhcC
Confidence            67789999999999999976543