Citrus Sinensis ID: 004390

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------
MMDPIPTAPPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccc
cccccccccccccHHHHcccccccccccccHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccccHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHccccc
mmdpiptappprsatdlfsdpadshplwfksnlflspnfdsesyISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKelpslpadgsdfdvnleerksmssattfqpvengtnvrETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLmqkiiphgpsealagasgdelESDYEQIKQCVEKDCKFLLDISsaensglhvFDFLANSILKEVLSAIqkgkpgafspgrptqFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAaslapvqnsnsnqgnsqALTLKQSVTLLDSMkscwrqdvfllpcsdKFLRLSLQLLSRYSNWLSSGLaarssghasfnpgnewaisaapddfiyIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITAtyrmtnkplpvrhspyvsgvlrpLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAqrragassdvsdhnvsdtDKICMQLFLDIQEYGRSLAALgvqaadippyrslwqcvapsdrqslikf
mmdpiptappprsATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLStklvdvdaaVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLikelpslpadgsDFDVNLEERKSmssattfqpvengtnvrETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQkgkpgafspgrpTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQnsnsnqgnsQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGItatyrmtnkplpvrhspyvsgVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQgaqrragassdvsdhnvsDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVApsdrqslikf
MMDPIPTAPPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLvdvdaavvRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIagaldsaltaaslaPVqnsnsnqgnsqALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFlrlslqllsrYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
*************************PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGL*******SAREVLELLLDTFHVVSKVEKLIKE******************************************LLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPH*****************YEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK***F****PTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTA********************LKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARS*GHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVAR******************************TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVA**********
************************HPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLI*******************************************MLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKI****************LESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASL*********QGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSS************************DDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITA**R*******VRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKT******************************KICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSD*******
***************DLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQN********ASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPV*********SQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL*********************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
****************LFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELP*********************************VRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAA***************QALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR*************AISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR*G***************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS****
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MMDPIPTAPPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLxxxxxxxxxxxxxxxxxxxxxDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query757 2.2.26 [Sep-21-2011]
Q921L5731 Conserved oligomeric Golg yes no 0.906 0.938 0.275 3e-81
Q14746738 Conserved oligomeric Golg yes no 0.914 0.937 0.274 3e-80
Q9VF78710 Conserved oligomeric Golg yes no 0.900 0.960 0.265 1e-55
Q54UC2904 Conserved oligomeric Golg yes no 0.527 0.441 0.262 8e-40
Q21444681 Conserved oligomeric Golg yes no 0.472 0.525 0.195 3e-08
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=2 Back     alignment and function desciption
 Score =  303 bits (776), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 207/751 (27%), Positives = 369/751 (49%), Gaps = 65/751 (8%)

Query: 21  PADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDY 80
           P     L F  + F+  +FD + ++S+ R  V  E LR +L+ +   L   +++LIN+DY
Sbjct: 9   PTGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68

Query: 81  ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140
           ADFVNLST LV +D A+ ++  PL +LRE++   R ++   ++A+   + ++ +    + 
Sbjct: 69  ADFVNLSTNLVGMDRALNQLSVPLGQLREEVLSLRSSVSEGILAVDERMSKQEDIRKKKM 128

Query: 141 VLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRET 200
            +  L+     V K+EK++               N +  K +SS     P+  G      
Sbjct: 129 SVLRLIQVIRSVEKIEKIL---------------NSQSSKDVSSQEASSPLLTG------ 167

Query: 201 QSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNAN 260
              +LERIA+E N+L+F+   ++ +P ++ +  RI   + +L  SL    + GL+  + +
Sbjct: 168 --QVLERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVD 225

Query: 261 VIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 320
           ++ +CLR YA ID T++AE +    +V P + ++I     E    +    L+  Y ++ +
Sbjct: 226 IVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVI----VEQFVESHPSSLQLMYNKLLE 281

Query: 321 CVEKDCKFLLDI-----SSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFL 375
            V   C+ L ++     SS + + +  +DFL NS+  E++  +++  P  F+PG P  F 
Sbjct: 282 FVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFH 341

Query: 376 RNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSAL 435
           + Y  S+DF+   E  C S+++V + RA   Y  F  +WN+ VYF +RF+E+AG+L++AL
Sbjct: 342 QKYTVSMDFVQRFERQCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAAL 401

Query: 436 TAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSR 495
           T          ++  G+   L       +  S+  CW  ++FL   + +  RL+LQ+L+R
Sbjct: 402 TDGL------EDAPAGSPYCLLASHRTWI--SLGKCWSDEMFLPLLAHRLWRLTLQILAR 453

Query: 496 YSNWLSSGLAARSSGHASFNPGNEWAISAAPDD------------------FIYIIHDIN 537
           +S ++S       S  ++         S  P +                   +Y++ D+ 
Sbjct: 454 FSVFVSELSVRPVSNESAKETKKPLTGSKDPSEDQGSHASEASAASISSTQLVYVVSDLG 513

Query: 538 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 597
            L  E   D L  V Q L     +    +  ++ +   +LS+ +P + + IV  L E   
Sbjct: 514 RL-QEWLPDLLETVKQKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCF 572

Query: 598 EDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDA 657
             L+    +   YR TNK +P   S YV   L+PL  L  G      + P      L +A
Sbjct: 573 SYLKSALEVPRLYRRTNKEVPSTASSYVDSALKPLYQLQSGHG--DKVQPAVMQSWLQEA 630

Query: 658 ATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDH--NVSDTDKICMQL 715
            +  T RY E  +++++  +K E SL +++Q   RR+ A++ VS     +SD DKI +QL
Sbjct: 631 LSDSTHRYFETVSDVLNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQL 688

Query: 716 FLDIQEYGRSLAALGVQAADIPPYRSLWQCV 746
            LD++  G  +  +G+Q +DI  + +L + V
Sbjct: 689 ALDVEHLGEQIQRMGLQTSDIKSFPALMELV 719
Required for normal Golgi morphology and function.
Mus musculus (taxid: 10090)
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1 Back     alignment and function description
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum GN=cog2 PE=3 SV=1 Back     alignment and function description
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis elegans GN=cogc-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query757
255540279756 Conserved oligomeric Golgi complex compo 0.998 1.0 0.799 0.0
356563194755 PREDICTED: conserved oligomeric Golgi co 0.997 1.0 0.756 0.0
224121966755 predicted protein [Populus trichocarpa] 0.990 0.993 0.764 0.0
224136109757 predicted protein [Populus trichocarpa] 0.993 0.993 0.754 0.0
449441234754 PREDICTED: conserved oligomeric Golgi co 0.996 1.0 0.756 0.0
225456291751 PREDICTED: conserved oligomeric Golgi co 0.989 0.997 0.757 0.0
356514011755 PREDICTED: conserved oligomeric Golgi co 0.997 1.0 0.746 0.0
147767731777 hypothetical protein VITISV_007347 [Viti 0.989 0.963 0.728 0.0
357477117754 Conserved oligomeric Golgi complex subun 0.996 1.0 0.743 0.0
297799512756 hypothetical protein ARALYDRAFT_492352 [ 0.972 0.973 0.723 0.0
>gi|255540279|ref|XP_002511204.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] gi|223550319|gb|EEF51806.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/757 (79%), Positives = 678/757 (89%), Gaps = 1/757 (0%)

Query: 1   MMDPIPTAPPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSE 60
           M+D + ++P PRSATDLFSDP DSHPLWFK NLFLSP FDSESYISELRTFVPF+TLRSE
Sbjct: 1   MVDSL-SSPAPRSATDLFSDPLDSHPLWFKPNLFLSPTFDSESYISELRTFVPFDTLRSE 59

Query: 61  LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120
           LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI+GFRG++EG
Sbjct: 60  LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIEGFRGSVEG 119

Query: 121 SLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERK 180
           SLVAL+NGL+QRSEAASARE+LELLLDTFHVVSKVEKLIKELPSLPAD S+ DVN   + 
Sbjct: 120 SLVALRNGLQQRSEAASAREILELLLDTFHVVSKVEKLIKELPSLPADWSNGDVNSTVKN 179

Query: 181 SMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASL 240
           +MS+  + Q +ENGTN+RETQSMLLERIASEMNRLKFY+AH+QNLPFIENMEKRI+SASL
Sbjct: 180 AMSNGISLQSIENGTNLRETQSMLLERIASEMNRLKFYMAHSQNLPFIENMEKRIQSASL 239

Query: 241 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPS 300
           LLDASLGHCFV GLEH++ N IYNCLRAYAAIDNT +AEEIF  T+VAPL+ KIIPHGPS
Sbjct: 240 LLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNTNSAEEIFRTTIVAPLIHKIIPHGPS 299

Query: 301 EALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQK 360
             +AG SGD LE+DY QIKQC+EKDCKFLL+ISSAENSGLH FDFLANSILKEVLSAIQK
Sbjct: 300 GTVAGVSGDGLENDYYQIKQCIEKDCKFLLEISSAENSGLHAFDFLANSILKEVLSAIQK 359

Query: 361 GKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYF 420
           GKPGAFSPGRPT+FL NYKSSLDFLA+LEGYCPSRSAVAKFR E +YVEFMKQWNVGVYF
Sbjct: 360 GKPGAFSPGRPTEFLMNYKSSLDFLAHLEGYCPSRSAVAKFRTEVVYVEFMKQWNVGVYF 419

Query: 421 SLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLP 480
           SLRFQEIAGALDSAL+A SL PV+N +S Q N Q LTLKQS TLL+S+KSCWR+DV +L 
Sbjct: 420 SLRFQEIAGALDSALSATSLVPVENLHSGQTNLQDLTLKQSATLLESLKSCWREDVLILS 479

Query: 481 CSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLA 540
           CSDKFLRLSLQLL+RYSNWLSSG+AAR  G+   N   EWAISA PDDF+YIIHD+ CLA
Sbjct: 480 CSDKFLRLSLQLLARYSNWLSSGIAARKMGNLGSNTVYEWAISAVPDDFVYIIHDLTCLA 539

Query: 541 TEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDL 600
           T V GDYL H+LQLLS  S++VLDLVKQSIL+ GKSL+ + P+ IN I++ LV +AVEDL
Sbjct: 540 TVVCGDYLDHILQLLSPSSADVLDLVKQSILQSGKSLNDLAPLAINAIIETLVNRAVEDL 599

Query: 601 RQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQ 660
           RQ+KGI+ATYRMTNKPLPVRHSPYVSGVL PLK  L+GERA+TYLT E + ELL+ AAT+
Sbjct: 600 RQVKGISATYRMTNKPLPVRHSPYVSGVLHPLKAFLDGERAITYLTKETRKELLVGAATE 659

Query: 661 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQ 720
           +TSRY+ELAAE +SVARKTE SLL+IRQGAQRR GASSDVSD +V+++DKICMQLFLDIQ
Sbjct: 660 LTSRYYELAAETVSVARKTEVSLLRIRQGAQRRGGASSDVSDQSVTNSDKICMQLFLDIQ 719

Query: 721 EYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF 757
           EYGRSLAALGV+AADIP Y SLWQCVAP DRQ++I F
Sbjct: 720 EYGRSLAALGVEAADIPAYYSLWQCVAPPDRQNVISF 756

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356563194|ref|XP_003549849.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224121966|ref|XP_002318717.1| predicted protein [Populus trichocarpa] gi|222859390|gb|EEE96937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224136109|ref|XP_002322242.1| predicted protein [Populus trichocarpa] gi|222869238|gb|EEF06369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441234|ref|XP_004138387.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456291|ref|XP_002279916.1| PREDICTED: conserved oligomeric Golgi complex subunit 2 [Vitis vinifera] gi|297734402|emb|CBI15649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514011|ref|XP_003525701.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|147767731|emb|CAN71854.1| hypothetical protein VITISV_007347 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357477117|ref|XP_003608844.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355509899|gb|AES91041.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|297799512|ref|XP_002867640.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] gi|297313476|gb|EFH43899.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query757
TAIR|locus:2126808756 AT4G24840 "AT4G24840" [Arabido 0.990 0.992 0.667 5e-266
ZFIN|ZDB-GENE-040426-2671730 cog2 "component of oligomeric 0.693 0.719 0.274 1.2e-73
MGI|MGI:1923582731 Cog2 "component of oligomeric 0.733 0.759 0.257 1.6e-71
UNIPROTKB|E1C7Y1739 COG2 "Uncharacterized protein" 0.290 0.297 0.323 1.2e-67
UNIPROTKB|F1MQ89739 COG2 "Uncharacterized protein" 0.705 0.722 0.256 1.2e-57
UNIPROTKB|Q14746738 COG2 "Conserved oligomeric Gol 0.708 0.726 0.253 1.4e-57
UNIPROTKB|F1P8W5678 COG2 "Uncharacterized protein" 0.706 0.789 0.256 1.6e-52
UNIPROTKB|B7Z2Y2679 COG2 "cDNA FLJ55945, highly si 0.708 0.789 0.253 8.2e-52
FB|FBgn0026634710 ldlCp "ldlCp-related protein" 0.689 0.735 0.260 5.5e-46
DICTYBASE|DDB_G0281163904 cog2 "oligomeric Golgi complex 0.291 0.244 0.280 1.7e-45
TAIR|locus:2126808 AT4G24840 "AT4G24840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2559 (905.9 bits), Expect = 5.0e-266, P = 5.0e-266
 Identities = 507/759 (66%), Positives = 603/759 (79%)

Query:     1 MMDPIPTAP-P---PRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFET 56
             M D + T+P P   PRSATD FSDP DSHPLWFK +LFLSPNFDSESYISELRTFVPF+T
Sbjct:     1 MSDLVATSPSPSSAPRSATDFFSDPYDSHPLWFKPSLFLSPNFDSESYISELRTFVPFDT 60

Query:    57 LRSELQAHLSSLNHELIDLINRDYADFVNLSTKLXXXXXXXXRMRAPLLELREKIDGFRG 116
             LRSEL++HL+SLN EL+DLINRDYADFVNLSTKL        RMRAPLLELREKI GFRG
Sbjct:    61 LRSELRSHLASLNRELVDLINRDYADFVNLSTKLVDIDAAVVRMRAPLLELREKITGFRG 120

Query:   117 ALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNL 176
             ++E +L AL+NGL+QRS+AA+AREVLELLLDTFHVVSKVEKLIK LPS P+D  + D N 
Sbjct:   121 SVEAALFALRNGLQQRSDAAAAREVLELLLDTFHVVSKVEKLIKVLPSTPSDWQNEDANS 180

Query:   177 EERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIK 236
               R SM+   + Q  ++GT +RETQSMLLERIASEMNRLKFY+AHAQNLPFIENMEKRI+
Sbjct:   181 MGRSSMNDENSTQ--QDGTTMRETQSMLLERIASEMNRLKFYMAHAQNLPFIENMEKRIQ 238

Query:   237 SASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIP 296
             SAS+LLDASLGHCF+ GL + + +V+YNCLRAYAAIDNT  AEEIF  T+VAP +QKII 
Sbjct:   239 SASVLLDASLGHCFIDGLNNSDTSVLYNCLRAYAAIDNTNAAEEIFRTTIVAPFIQKIIT 298

Query:   297 HGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLS 356
             H  +   AG S DELE+DY+QIK  + KDCK LL+ISS + SGLHVFDFLANSILKEVL 
Sbjct:   299 HETTTNAAGTSEDELENDYKQIKHFIAKDCKMLLEISSTDKSGLHVFDFLANSILKEVLW 358

Query:   357 AIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNV 416
             AIQK KPGAFSPGRPT+FL+NYK+SLDFLAYLEGYCPSRSAV KFRAEAI VEFMKQWNV
Sbjct:   359 AIQKVKPGAFSPGRPTEFLKNYKASLDFLAYLEGYCPSRSAVTKFRAEAICVEFMKQWNV 418

Query:   417 GVYFSLRFQEIXXXXXXXXXXXXXXPVXXXXXXXXXXXALTLKQSVTLLDSMKSCWRQDV 476
             GVYFSLRFQEI               V            L L+QS TLL+ ++SCW++DV
Sbjct:   419 GVYFSLRFQEIAGALDSALTSPSL--VFIQDSDKESSLNLILRQSDTLLECLRSCWKEDV 476

Query:   477 FLLPCSDKFXXXXXXXXXXYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDI 536
              +   +DKF          YS W+SS L  R S +AS +PG EWA+SA  +DF+Y+IHD+
Sbjct:   477 LVFSAADKFLRLTLQLLSRYSFWVSSALNNRKS-NASPSPGCEWAVSATAEDFVYVIHDV 535

Query:   537 NCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKA 596
             NCL +EV GDYL H+ Q LSS S+EVLD+V+ SI +GG SL  +LP++  TI+D +V+K+
Sbjct:   536 NCLVSEVCGDYLGHISQYLSSSSTEVLDVVRISIEQGGVSLEKVLPLLTKTIIDVIVDKS 595

Query:   597 VEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLD 656
             VEDLRQL+GITAT+RMTNKPLPVRHSPYV G+LRP+K  LEG++A  YLT + K ELL  
Sbjct:   596 VEDLRQLRGITATFRMTNKPLPVRHSPYVVGLLRPVKAFLEGDKARNYLTQKTKEELLHG 655

Query:   657 AATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLF 716
             + ++IT RY+ELAA+++SVARKT+SSL K+RQ AQRR GA+S VSD NVS+TDK+CMQLF
Sbjct:   656 SVSEITRRYYELAADVVSVARKTQSSLQKLRQNAQRRGGAASGVSDQNVSETDKMCMQLF 715

Query:   717 LDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 755
             LDIQEYGR+++ALG++ ADIP Y S WQCVAP+DRQ+ I
Sbjct:   716 LDIQEYGRNVSALGLKPADIPEYCSFWQCVAPADRQNSI 754
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0007030 "Golgi organization" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
ZFIN|ZDB-GENE-040426-2671 cog2 "component of oligomeric golgi complex 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1923582 Cog2 "component of oligomeric golgi complex 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7Y1 COG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ89 COG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q14746 COG2 "Conserved oligomeric Golgi complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8W5 COG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z2Y2 COG2 "cDNA FLJ55945, highly similar to Conserved oligomeric Golgi complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0026634 ldlCp "ldlCp-related protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281163 cog2 "oligomeric Golgi complex component" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query757
pfam06148133 pfam06148, COG2, COG (conserved oligomeric Golgi) 9e-45
pfam12022120 pfam12022, DUF3510, Domain of unknown function (DU 1e-34
>gnl|CDD|218912 pfam06148, COG2, COG (conserved oligomeric Golgi) complex component, COG2 Back     alignment and domain information 
 Score =  156 bits (397), Expect = 9e-45
 Identities = 62/133 (46%), Positives = 91/133 (68%)

Query: 27  LWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNL 86
           L F  + FL+P+FD + ++SELR  VP E+LR +L+A+L  L  ELI+LIN DYADFV+L
Sbjct: 1   LCFDKHEFLAPDFDPDQFLSELRKGVPLESLRDDLRAYLKLLKSELIELINEDYADFVSL 60

Query: 87  STKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLL 146
           ST LV +D  + R+R PLL LR++++  R  LE  L  ++  L+++ +    +E L+LLL
Sbjct: 61  STNLVGLDEKLERIRVPLLALRKEVESVRSELEARLEEVEAKLEEKKDLREKKESLKLLL 120

Query: 147 DTFHVVSKVEKLI 159
           D  HVV K+E L+
Sbjct: 121 DLDHVVEKLEDLL 133

The COG complex comprises eight proteins COG1-8. The COG complex plays critical roles in Golgi structure and function. The proposed function of the complex is to mediate the initial physical contact between transport vesicles and their membrane targets. A comparable role in tethering vesicles has been suggested for at least six additional large multisubunit complexes, including the exocyst, a complex that mediates trafficking to the plasma membrane. COG2 structure reveals a six-helix bundle with few conserved surface features but a general resemblance to recently determined crystal structures of four different exocyst subunits. These bundles inCOG2 may act as platforms for interaction with other trafficing proteins including SNAREs (soluble N-ethylmaleimide factor attachment protein receptors) and Rabs. Length = 133
>gnl|CDD|221383 pfam12022, DUF3510, Domain of unknown function (DUF3510) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 757
KOG2307705 consensus Low density lipoprotein receptor [Intrac 100.0
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 100.0
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 99.97
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 99.52
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.63
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 98.48
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 98.27
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 98.05
KOG2180793 consensus Late Golgi protein sorting complex, subu 97.69
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 97.59
PF10474234 DUF2451: Protein of unknown function C-terminus (D 97.35
KOG2211797 consensus Predicted Golgi transport complex 1 prot 97.1
PF07393710 Sec10: Exocyst complex component Sec10; InterPro: 97.04
KOG2346636 consensus Uncharacterized conserved protein [Funct 96.68
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 96.44
KOG4182828 consensus Uncharacterized conserved protein [Funct 95.91
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 95.41
PF15469182 Sec5: Exocyst complex component Sec5 94.98
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 92.57
KOG2115951 consensus Vacuolar sorting protein VPS45 [Intracel 92.51
PF14923450 CCDC142: Coiled-coil protein 142 82.81
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-162  Score=1303.67  Aligned_cols=695  Identities=38%  Similarity=0.567  Sum_probs=628.2

Q ss_pred             CCCCCcCCCCCCCCCCCccCcCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCC
Q 004390           11 PRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKL   90 (757)
Q Consensus        11 ~~~~~~~~~~p~~~~~l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L   90 (757)
                      ++|++..+..|+|+++|||||+.|++||||||.|++.+|.+++||+||+|||.|++.|+++||||||+|||||||||+||
T Consensus         5 k~sa~~~~g~~~d~~kLcFdk~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnL   84 (705)
T KOG2307|consen    5 KTSAALPNGFYIDESKLCFDKTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNL   84 (705)
T ss_pred             cccccCCCCCCCCccccccChhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence            56777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 004390           91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGS  170 (757)
Q Consensus        91 ~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~  170 (757)
                      ||+|++|++|++||+++|++|.+.|+.|++...++++++.+..++   |+.+..+++..+.+.++|+|...+.+.|.+|+
T Consensus        85 Vgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~---Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q  161 (705)
T KOG2307|consen   85 VGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSN---REKKIELLDLIYVLVAIEKLSKMLLSPPSKEQ  161 (705)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            999999999999999999999999999999999998655555544   44455555566666777777666677676653


Q ss_pred             CccchhhhhhccCCCCCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHH
Q 004390          171 DFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCF  250 (757)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l  250 (757)
                      ..                     |       ...|||+|.|+|||+||+++++++ ++.++++||+.++..|++.|+.+|
T Consensus       162 ~~---------------------~-------a~sLERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf  212 (705)
T KOG2307|consen  162 QD---------------------G-------ATSLERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLF  212 (705)
T ss_pred             cc---------------------c-------cchHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHH
Confidence            30                     1       113999999999999999999999 999999999999999999999999


Q ss_pred             HHhhhhcChHHHHHHHHHHHHhcchhhHHHHHHHHhhHHHHhhhcCCCCcccccCCCcchHHHHHHHHHHHHH-hhhhHH
Q 004390          251 VHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVE-KDCKFL  329 (757)
Q Consensus       251 ~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~~~~~L~~~y~~il~fv~-~~~~~l  329 (757)
                      .+++++ +.+.+.+|||+|++|+.++.||.+||..||+||+.++|++...    .++|+||.++|++|++||. ++|..+
T Consensus       213 ~eglqs-a~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~----e~sp~gl~~~ykqilefv~~h~c~ll  287 (705)
T KOG2307|consen  213 AEGLQS-AAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHD----ETSPSGLLKLYKQILEFVKKHRCTLL  287 (705)
T ss_pred             HHHhhc-cHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            999954 8899999999999999999999999999999999999999776    6899999999999999999 889999


Q ss_pred             HHhhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhH
Q 004390          330 LDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIY  407 (757)
Q Consensus       330 l~it~~~~s~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~~~~y  407 (757)
                      .+++....+|++|||||+||+|++|..+|++.||++|+||||++||+||++|++||++||+  .|+|+.+|++||+||.|
T Consensus       288 re~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~  367 (705)
T KOG2307|consen  288 REMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAIC  367 (705)
T ss_pred             HHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHH
Confidence            9999777778999999999999999999999999999999999999999999999999999  89999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHhHHHhhhhcccccccCCCCCCCCCcccchhhHHHHHHHHhhhcccCccccccchHHHH
Q 004390          408 VEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLR  487 (757)
Q Consensus       408 ~~f~~rWnLpVYFqlRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~Vfl~~L~~rFwk  487 (757)
                      ++||+|||||||||||||||||++|++|+ ++.......+++.++..+|++.+|.++|+||++||+||||+|++.|||||
T Consensus       368 ~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~r  446 (705)
T KOG2307|consen  368 VSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWR  446 (705)
T ss_pred             HHHHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHH
Confidence            99999999999999999999999999998 54333333334445556899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHH
Q 004390          488 LSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVK  567 (757)
Q Consensus       488 LtLQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~  567 (757)
                      ||||+++||+.|+.+ +.+..    +++.+ +|   .+..+++++++|...+.+.+.+.++++|+++++..+....+.+.
T Consensus       447 ltlQlllRysrwisa-itns~----gs~~s-kp---~trtqlvyv~hdd~~llqevl~elle~I~~kl~~~~k~~sdv~a  517 (705)
T KOG2307|consen  447 LTLQLLLRYSRWISA-ITNSF----GSEKS-KP---ATRTQLVYVRHDDGNLLQEVLPELLESIWGKLHDITKVFSDVFA  517 (705)
T ss_pred             HHHHHHHHHhHHHHH-HHhcc----CCCCC-CC---cchhheeeeecccchHHHHHhHHHHHHHHhhccchhhhhHHHHH
Confidence            999999999999984 43321    22211 33   45578999997776677777777999999999988866677778


Q ss_pred             HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCH
Q 004390          568 QSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTP  647 (757)
Q Consensus       568 ~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~  647 (757)
                      ++|+.++.+|.+++|.+.+.||+.+++.|...|+||++||++||||||++||+||+||.++|+|+++|.++...  .|.+
T Consensus       518 ~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~--~L~q  595 (705)
T KOG2307|consen  518 QSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKC--ELEQ  595 (705)
T ss_pred             HHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhh--hhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999876  7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 004390          648 EAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLA  727 (757)
Q Consensus       648 ~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~  727 (757)
                      .+.+||+.+|..++|.+|++.++|||++|+|||+||+|||+.+++++|+ ++.++++||||||||+||++||++|+.+++
T Consensus       596 ~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~-s~gss~~vSddDKir~QL~lDv~~~~s~~~  674 (705)
T KOG2307|consen  596 PHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS-SGGSSQTVSDDDKIRQQLYLDVKYFLSYAE  674 (705)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876665 556678899999999999999999999999


Q ss_pred             hcCCCCCCCccHHHHHHhcccccccccc
Q 004390          728 ALGVQAADIPPYRSLWQCVAPSDRQSLI  755 (757)
Q Consensus       728 ~lgv~~~~~~~~~~L~~~V~~~~~~~~~  755 (757)
                      +||+.+++|.+|++|.+++....++..+
T Consensus       675 kL~fqa~di~~~~~lvel~~~~~dsa~~  702 (705)
T KOG2307|consen  675 KLVFQAADITGLQELVELFDKDADSAIV  702 (705)
T ss_pred             HhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence            9999999999999999999887776544

>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG4182 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14923 CCDC142: Coiled-coil protein 142 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query757
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 9e-10
 Identities = 81/568 (14%), Positives = 151/568 (26%), Gaps = 167/568 (29%)

Query: 28  WFKSNL---FLSPNFDSESYISEL-------RTFVPFETLRSE----LQAHLSSLNHE-- 71
           +  S +      P+  +  YI +        + F  +   R +    L+  L  L     
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 72  -------------LIDLINRDYA---DFVN----LSTKLVDVDAAVVRMRAPLLELREKI 111
                        +   +   Y            L+ K  +    V+ M   L +L  +I
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---LQKLLYQI 209

Query: 112 DGFRGALEGSLVALQNGLKQRSEAASAR-----------EVLELLLD---------TFHV 151
           D    +           +K R  +  A              L L+L           F++
Sbjct: 210 DPNWTSRSDHSSN----IKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNL 264

Query: 152 VSKVEKLIKELPSLPADGSDFD-VNLEERKSMSSATTFQPVENGTNVRETQSMLLERIAS 210
             K+  L+             D ++      +S               E +S+L      
Sbjct: 265 SCKI--LL-----TTRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLL------ 307

Query: 211 EMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEH-QNANVIYNCLRAY 269
               LK+     Q+LP      + + + +    + +      GL    N    +     +
Sbjct: 308 ----LKYLDCRPQDLP------REVLTTNPRRLSIIAESIRDGLATWDN----WK----H 349

Query: 270 AAIDNTRNAEEIFCNTVVAPLMQK------IIPHG---PSEALAGASGDELESDYEQI-- 318
              D      E   N +     +K      + P     P+  L+    D ++SD   +  
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 319 ----KQCVEKDCK----------FLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPG 364
                  VEK  K            L +       LH       SI+ +  +  +     
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH------RSIV-DHYNIPKTFDSD 462

Query: 365 AFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRF 424
              P     +L  Y     F +++ G+      +           F       V+   RF
Sbjct: 463 DLIP----PYLDQY-----FYSHI-GH-----HLKNIEHPERMTLFRM-----VFLDFRF 502

Query: 425 QEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDV--FLLPCS 482
                 L+  +   S A   + +      Q    K  +   D         +  FL    
Sbjct: 503 ------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 483 DKFLRLSLQLLSRYSNWLSSGLAARSSG 510
           +  +       S+Y++ L   L A    
Sbjct: 557 ENLIC------SKYTDLLRIALMAEDEA 578
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query757
2jqq_A204 Conserved oligomeric golgi complex subunit 2; prot 96.51
2a2f_X325 Exocyst complex component SEC15; all helical struc 96.51
3n1e_A141 Vacuolar protein sorting-associated protein 54; sp 92.88
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 83.34
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae} Back     alignment and structure
Probab=96.51  E-value=0.095  Score=50.63  Aligned_cols=169  Identities=15%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHH-H---HHHhhchhHHHHHHHHHHH-HHHHHhHHHHHHHHH
Q 004390           55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVD-A---AVVRMRAPLLELREKIDGF-RGALEGSLVALQNGL  129 (757)
Q Consensus        55 e~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d-~---~i~~l~~pL~~l~~~V~~~-r~~v~~~~~~l~~~L  129 (757)
                      ++|..||...++.+.+.|++=||.+|.|+.+++.--.|-+ +   .+.+++..|.+|..++... ..++....+-+.+.+
T Consensus         3 D~L~~dls~Lsq~m~~~LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l   82 (204)
T 2jqq_A            3 DSLIRDLSGLSQKMVQTLLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVL   82 (204)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            6789999999999999999999999999999999998842 3   3444555666666666553 333444444455555


Q ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCccCCccccchhh
Q 004390          130 KQRSEAASAREVL------ELLLDTFHVVS-KVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQS  202 (757)
Q Consensus       130 ~~r~~l~~~k~~L------~lll~~~~~v~-klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (757)
                      +--+++.+-..+|      .-++.+...++ .|+.+-+.-   |=          |+.                .   -.
T Consensus        83 ~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~---pl----------d~e----------------L---c~  130 (204)
T 2jqq_A           83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIE---PL----------EEE----------------I---CS  130 (204)
T ss_dssp             HHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSS---CC----------CHH----------------H---HH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC---CC----------cHH----------------H---HH
Confidence            4444444444322      11122222221 133332110   00          000                0   12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc--CCcchHhHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004390          203 MLLERIASEMNRLKFYIAHAQ--NLPFIENMEKRIKSASLLLDASLGHCFVHGLE  255 (757)
Q Consensus       203 ~~LeR~a~e~~~L~~~~~~~~--~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~  255 (757)
                      .+..++..-+...+.......  +.|++..|+.-...+-.+++..|.-+...+++
T Consensus       131 ~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE  185 (204)
T 2jqq_A          131 GLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLKILTEKCLE  185 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            234444444555555555544  57999999888888888888888666655655
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A Back     alignment and structure
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00