Citrus Sinensis ID: 004475
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 751 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.990 | 0.775 | 0.716 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.989 | 0.792 | 0.711 | 0.0 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.290 | 0.331 | 0.266 | 2e-09 | |
| P34422 | 740 | Dipeptidyl peptidase fami | yes | no | 0.201 | 0.204 | 0.291 | 9e-09 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.210 | 0.215 | 0.272 | 2e-08 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.211 | 0.217 | 0.245 | 3e-08 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.198 | 0.204 | 0.288 | 1e-07 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.185 | 0.189 | 0.260 | 5e-07 | |
| P14740 | 767 | Dipeptidyl peptidase 4 OS | no | no | 0.326 | 0.319 | 0.264 | 6e-07 | |
| P28843 | 760 | Dipeptidyl peptidase 4 OS | no | no | 0.327 | 0.323 | 0.265 | 2e-06 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/748 (71%), Positives = 631/748 (84%), Gaps = 4/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 770
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E RTLWEATNVY
Sbjct: 771 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 830
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 831 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 890
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 891 SARESIMHVLWETDRWLQKYCVPNTSDA 918
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/746 (71%), Positives = 630/746 (84%), Gaps = 3/746 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+ D +LGPEK VHGYP+GA+INFV+WS DG+ ++FSVRVDEEDN S
Sbjct: 155 MSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHLSFSVRVDEEDNTSG- 213
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+WIAD E+GEA+PLF+SP+I LNA+F SFVWVNNSTLL+ TIP SR PP+K VP
Sbjct: 214 KLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPS 273
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNE N++ R +LLKDEYD LFDYY T+QLVL S DGT K G PAVYT++
Sbjct: 274 GPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSI 333
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD KY++I+S+HRPYSY VPC RF +KV++WT DG+ +RELCDLP AEDIP+ +SV
Sbjct: 334 DPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSV 393
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G RSI WR DKP+ LYWVE QD GDA VEVSPRDI+Y + AEP GE+PEILHKLDLR
Sbjct: 394 RKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLR 453
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
++ SWCD+SLALV E+WYKT +TRTW++ P KDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 454 YAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRR 513
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T+ GT VIAK+KK+ DE YILLNG G TPEGN+PFLDLFDINTGSKERIW+S++EKY+E
Sbjct: 514 TAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYE 572
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ + + ++ L +LKILTSKESKTE TQY++ WP KK QIT+FPHPYP LASL
Sbjct: 573 TVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASL 632
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
KEMI+YQRKDGV LTATLYLPPGYD S+DGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 633 YKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
G+ TS L++LAR FA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAA EEVVRRGVA
Sbjct: 693 PGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQLVTSAEAAAEEVVRRGVAH 752
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
P +IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEATN Y
Sbjct: 753 PDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATNTY 812
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGALSRLV+LPFE H Y
Sbjct: 813 VEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQSDRFFNALKGHGALSRLVILPFESHGY 872
Query: 720 AARENVMHVIWETDRWLQKYCLSNTS 745
+ARE++MHV+WETDRWLQKYCLS +S
Sbjct: 873 SARESIMHVLWETDRWLQKYCLSGSS 898
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 30/248 (12%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
E I+Y +DGV + L P + PL + G P+ G
Sbjct: 402 EEIQYATEDGVMVNGWLMRPAQMEGETTYPLIL----------------NIHGGPHMMYG 445
Query: 542 MTPTSSL-IFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRG- 596
T + A+ +AV+ G G + N + + AV+E ++R
Sbjct: 446 HTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDYDDVMQAVDEAIKRDP 505
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW--- 653
DP R+ V G SYG FMT ++ RS S + F T W
Sbjct: 506 HIDPKRLGVTGGSYGGFMTNWIVGQTNRFKAAVTQRSISNWISFHGVSDIGYFFTDWQLE 565
Query: 654 ----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 709
E T + SP+ +A ++ P+LI+HGE DD+ + QAE+ F ALK G ++L
Sbjct: 566 HDMFEDTEKLWDRSPLKYAANVETPLLILHGERDDRCPI--EQAEQLFIALKKMGKETKL 623
Query: 710 VLLPFEHH 717
V P H
Sbjct: 624 VRFPNASH 631
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-----KTLTP 642
AVE V +G+A+ S +AV G SYG + T L P F CG+ G N + + P
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPP 554
Query: 643 F--GFQTEFRTLW-------EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693
+ GF+ + + E SP+ A+++ KPI+II G D +V ++
Sbjct: 555 YWLGFRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPRVK--QAES 612
Query: 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741
++F AL+ +L P E H +N M + +LQ+ CL
Sbjct: 613 DQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ-CL 659
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638
Q V + AVE+V++ D R+A+ G S+G F++ HL+ P + IAR+ N
Sbjct: 557 HQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINI 616
Query: 639 T------------LTPFGFQTEFRTLWEATNVYIEM---SPITHANKIKKPILIIHGEVD 683
+ GF L + NV+ EM SPI + ++K P+L++ G+ D
Sbjct: 617 ASMMGSTDIPDWCMVETGFPYSNSCLPD-LNVWEEMLDKSPIKYIPQVKTPVLLMLGQED 675
Query: 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+V Q ++ ALK RL+L P +H + E WL +
Sbjct: 676 RRVPF--KQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 16/175 (9%)
Query: 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN- 637
Q V + AV++V++ D R+A+ G S+G F++ HL+ P + IAR+ N
Sbjct: 557 HQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINI 616
Query: 638 -------------KTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDD 684
T F + ++ ++ SPI + ++K P+L++ G+ D
Sbjct: 617 VSMMGTTDIPDWCMVETGFPYSNDYLPDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDR 676
Query: 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+V Q ++ ALK RL+L P H + E T WL +
Sbjct: 677 RVPF--KQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLWLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-- 637
Q V + AVE+V++ D R+A+ G S+G F++ HL+ P + + R+ N
Sbjct: 556 QDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGACVVRNPVINIA 615
Query: 638 ----KTLTPFGFQTEFRTLWEAT-----NVYIEM---SPITHANKIKKPILIIHGEVDDK 685
T P E L+ + NV+ EM SPI + ++K P+L++ G+ D +
Sbjct: 616 SMMGSTDIPDWCVVEAGYLYSSDCLPDPNVWSEMLNKSPIKYTPQVKTPVLLMLGQEDRR 675
Query: 686 VGLFPMQAERFFDALKGHGALSRLVLLPFEHH----VYAARENVMH-VIW 730
V Q ++ ALK RL+L P H V ++ M+ VIW
Sbjct: 676 VPF--KQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVIW 723
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639
Q V + AVE+V++ D R+A+ G S+G F++ HL+ P + + R+ N
Sbjct: 558 QDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIA 617
Query: 640 ------------LTPFGFQTEFRTL-----WEATNVYIEMSPITHANKIKKPILIIHGEV 682
+ GF L W A ++ SPI +A ++K P+L++ G+
Sbjct: 618 SMMGSTDIPDWCMVEAGFSYSSDCLPDLSVWAAM---LDKSPIKYAPQVKTPLLLMLGQE 674
Query: 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723
D +V Q ++ LK RL+L P H + E
Sbjct: 675 DRRVPF--KQGMEYYRVLKARNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P14740|DPP4_RAT Dipeptidyl peptidase 4 OS=Rattus norvegicus GN=Dpp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 35/280 (12%)
Query: 479 LQKEMIKYQRKDGVPLTATLY-----LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ DAA ++
Sbjct: 505 LQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL- 562
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVE 590
N + + T ++I A G +GDK+ N R V A
Sbjct: 563 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINKRLGTLEVEDQIEAAR 612
Query: 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
+ ++ G D R+A+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 613 QFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 672
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKG 702
G T L + Y + ++ A K+ L+IHG DD V Q+ + AL
Sbjct: 673 GLPTPEDNL----DHYRNSTVMSRAENFKQVEYLLIHGTADDNVHF--QQSAQISKALVD 726
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ +LQ+ C S
Sbjct: 727 AGVDFQAMWYTDEDHGIASSTAHQHIYSHMSHFLQQ-CFS 765
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones (By similarity). Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 OS=Mus musculus GN=Dpp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 33/279 (11%)
Query: 479 LQKEMIKYQRKDGVPLTATLY-----LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
LQ + ++ D + L T + LPP +D+SK PL +A P K+ DA+ ++
Sbjct: 498 LQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DASFRL- 555
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVE 590
N + + T ++I A G +GDK+ N R V A
Sbjct: 556 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTLEVEDQIEAAR 605
Query: 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-----RSGSYNKTLTP--F 643
+ V+ G D R+A+ G SYG ++T+ +L +F CGIA R Y+ T
Sbjct: 606 QFVKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM 665
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703
G L N + MS H +++ L+IHG DD V Q+ + AL
Sbjct: 666 GLPIPEDNLDHYRNSTV-MSRAEHFKQVE--YLLIHGTADDNVHF--QQSAQISKALVDA 720
Query: 704 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
G + + E H A+ H+ +LQ+ C S
Sbjct: 721 GVDFQAMWYTDEDHGIASSTAHQHIYSHMSHFLQQ-CFS 758
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 751 | ||||||
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.992 | 0.815 | 0.740 | 0.0 | |
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.990 | 0.774 | 0.738 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.993 | 0.771 | 0.734 | 0.0 | |
| 449436423 | 970 | PREDICTED: probable glutamyl endopeptida | 0.992 | 0.768 | 0.729 | 0.0 | |
| 449436421 | 971 | PREDICTED: probable glutamyl endopeptida | 0.992 | 0.767 | 0.729 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.988 | 0.819 | 0.729 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.993 | 0.775 | 0.719 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.992 | 0.775 | 0.717 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.992 | 0.774 | 0.716 | 0.0 | |
| 332278170 | 960 | RecName: Full=Probable glutamyl endopept | 0.990 | 0.775 | 0.716 | 0.0 |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/747 (74%), Positives = 655/747 (87%), Gaps = 2/747 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+N SS
Sbjct: 109 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEEN-SSS 167
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 168 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 227
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 228 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 287
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 288 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 347
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 348 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 407
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 408 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 467
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 468 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 527
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 528 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 587
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 588 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 647
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDR+VEQLV+SAEAAVEEV+RRGVA
Sbjct: 648 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAH 707
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEAT+ Y
Sbjct: 708 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTY 767
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIK+P+L+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 768 VEMSPFMSANKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 827
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSD 746
AARE++MHV+WETDRWLQK+C+SNT++
Sbjct: 828 AARESIMHVLWETDRWLQKHCVSNTTN 854
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/747 (73%), Positives = 654/747 (87%), Gaps = 3/747 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+ SS
Sbjct: 167 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEN--SSS 224
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 225 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 284
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 285 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 344
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 345 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 404
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 405 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 464
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 465 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 524
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 525 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 584
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 585 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 644
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 645 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 704
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDR+VEQLV+SAEAAVEEV+RRGVA
Sbjct: 705 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAH 764
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEAT+ Y
Sbjct: 765 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTY 824
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIK+P+L+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 825 VEMSPFMSANKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 884
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSD 746
AARE++MHV+WETDRWLQK+C+SNT++
Sbjct: 885 AARESIMHVLWETDRWLQKHCVSNTTN 911
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/758 (73%), Positives = 649/758 (85%), Gaps = 12/758 (1%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD LGPE+E+HGYPDGAKINFV+WS DG+ +AFS+R DEEDN SS
Sbjct: 162 MSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEEDN-SSS 220
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SP++ LNAVF +FVWV+NSTLL+ IPSSR D PKK +VP
Sbjct: 221 KLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKKPLVPS 280
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN+I R +LLKDEYDE LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 281 GPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPAVYTSM 340
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+L++S+HRPYS+ VPC RF +KV+VWTTDGK VRE+CDLP AEDIP+ +SV
Sbjct: 341 DPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPIAISSV 400
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMR+I+WRADKPSTLYW E QD GDA VEVSPRDIIYTQPAEP EGE+PEILHKLDLR
Sbjct: 401 RKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILHKLDLR 460
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDDSLALV E+WYKT +TRTW++ P SKDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 461 YGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGSPMLRR 520
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT VIAKIKKENDE YILLNG G T EGNIPFLDLFDIN GSKERIWES +EKY+E
Sbjct: 521 TPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEKEKYYE 580
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T V+L+ E D+ L++LK+LTSKESKTE TQY I WP KK QITNFPHPYP LASL
Sbjct: 581 TVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYPQLASL 640
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMIKYQR DGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 641 QKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 700
Query: 540 SGMTPTSSLIFLARR----------FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589
+G+ PTS+L++LARR FA+L+GP+IPIIGEGDK NDR+VEQLV+SAEAAV
Sbjct: 701 AGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYVEQLVASAEAAV 760
Query: 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF 649
EEV+RRGVA P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 761 EEVIRRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 820
Query: 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 709
RTLWEAT Y+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RL
Sbjct: 821 RTLWEATGTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 880
Query: 710 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDG 747
V+LPFE H YAARE+++HV+WETDRWLQK+C+SN+SD
Sbjct: 881 VILPFESHGYAARESILHVLWETDRWLQKHCVSNSSDA 918
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436423|ref|XP_004135992.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] gi|449507837|ref|XP_004163143.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/750 (72%), Positives = 650/750 (86%), Gaps = 5/750 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 356
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 357 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 416
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 417 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 476
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 536
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 537 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 596
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDR+VEQLV SAEAAV+EV++RG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYVEQLVGSAEAAVQEVIKRG 771
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656
VA PS+IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEAT
Sbjct: 772 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 831
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716
+ Y+EMSP ANKIKKPIL+IHGE D+ G PMQ++RFF+ALKGHGAL RLV+LPFE
Sbjct: 832 STYVEMSPFISANKIKKPILLIHGEEDNNPGTLPMQSDRFFNALKGHGALCRLVVLPFES 891
Query: 717 HVYAARENVMHVIWETDRWLQKYCLSNTSD 746
H Y++RE++MHV+WETDRWL+KYC SN SD
Sbjct: 892 HGYSSRESIMHVLWETDRWLEKYCSSNASD 921
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436421|ref|XP_004135991.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] gi|449507834|ref|XP_004163142.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/750 (72%), Positives = 650/750 (86%), Gaps = 5/750 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 356
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 357 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 416
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 417 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 476
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 536
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 537 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 596
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDR+VEQLV SAEAAV+EV++RG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYVEQLVGSAEAAVQEVIKRG 771
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656
VA PS+IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEAT
Sbjct: 772 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 831
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716
+ Y+EMSP ANKIKKPIL+IHGE D+ G PMQ++RFF+ALKGHGAL RLV+LPFE
Sbjct: 832 STYVEMSPFISANKIKKPILLIHGEEDNNPGTLPMQSDRFFNALKGHGALCRLVVLPFES 891
Query: 717 HVYAARENVMHVIWETDRWLQKYCLSNTSD 746
H Y++RE++MHV+WETDRWL+KYC SN SD
Sbjct: 892 HGYSSRESIMHVLWETDRWLEKYCSSNASD 921
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/748 (72%), Positives = 643/748 (85%), Gaps = 6/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD +LGPEKEVHGYPDGAKINFV+WS DG+ +AFS+RV EEDN SS
Sbjct: 107 MSFYTGIGIHQLMPDGTLGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDN-SSS 165
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SPD+ LNAVF +FVWV+NS+LL+ TIPSSR DPPKK VP
Sbjct: 166 KLRVWVANMETGQARPLFQSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPS 225
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN++ R +LLKDEYDE LFDYYTT+Q+VL SLDGTAK+ G PAVYT++
Sbjct: 226 GPKIQSNEQKNVVQVRTFQDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSM 285
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQ Y+LI+S+HRPYS+ VP RF +KV+VWTTDGK VRELCDLP AEDIP+ +SV
Sbjct: 286 DPSPDQNYLLISSIHRPYSFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSV 345
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G R+I+WRADKPSTLYW E QD GDA VEVSPRDI+YTQPAEP EGE+PEILHKLDLR
Sbjct: 346 RKGKRAINWRADKPSTLYWAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLR 405
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ + WCDDSLALV E+WYKT +TRTW++ PGSKD +PR+LFDR E+VYSDPGSPM+ R
Sbjct: 406 YGGIYWCDDSLALVYESWYKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRR 465
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT VIAKIKKENDE Y+LL G G TPEGNIPFLDLFDINTGSKERIWES++E+Y+E
Sbjct: 466 TPAGTYVIAKIKKENDEGTYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYE 525
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ E D+ L++L+ILTSKESKTE QY I WP KK+ QITNFPHPYP LASL
Sbjct: 526 TVVALMLDYEEGDLLLDRLQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASL 585
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPN+F
Sbjct: 586 QKEMIRYQRKDGVQLTATLYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKF 645
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++ FA+L+GP+IPIIGEGD+ NDR+VEQLV+S EAAVEEV++RGVA
Sbjct: 646 AGIGSTSALLW----FAILSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAH 701
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEAT Y
Sbjct: 702 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQHEDRTLWEATTTY 761
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 762 VEMSPFMSANKIKKPILLIHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGY 821
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
AARE++MHV+WETDRWLQK+C+ N +D
Sbjct: 822 AARESIMHVLWETDRWLQKHCVQNPTDA 849
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/748 (71%), Positives = 642/748 (85%), Gaps = 2/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH +LPD +LGPE E+HG+P+GAKINFV+WSPD + ++FS+RV+EED+ +S
Sbjct: 165 MSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEEDSNTS- 223
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KL VW+AD ETG+A+PLF+SPD+ LNAVF ++VWV+NSTLL+ TIPS+R PPKK +VP
Sbjct: 224 KLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKPLVPG 283
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKNII R +LLKDEYDE LFDYY T+QLVL SLDGT KDFG PA+YT++
Sbjct: 284 GPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAIYTSL 343
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD+KY++I SMHRPYS+ VPC RF +KV++W+ DGK VRE+CDLP AEDIP+ NSV
Sbjct: 344 DPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPITSNSV 403
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDIIY+QPAE EGE+P ILHKLDLR
Sbjct: 404 RKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHKLDLR 463
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDDSLA V E+WYKT + +TW+V PGS+DV PR+LFDR E+VYSDPGSPM+ R
Sbjct: 464 YGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSPMLRR 523
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT +IAKIKK DE YI+LNG G TPEGN+PFLDLFDINTGSKERIWES++EKYFE
Sbjct: 524 TQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKEKYFE 583
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ L++LKIL SKESKTE TQY+ +SWP KK Q+TNFPHPYP LASL
Sbjct: 584 TVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQLASL 643
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+Y+RKDGV LTATLYLPPGY+ S DGPLPCL W+YP ++KSKDAA QVRGSPNEF
Sbjct: 644 QKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGSPNEF 703
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++LA+RFA+L+GP+IPIIGEG+ ND +VEQLV+SAEAAVEEV+RRGVA
Sbjct: 704 AGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIRRGVAH 763
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
P +IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E RTLWEATN Y
Sbjct: 764 PKKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATNTY 823
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGALSRLV+LP+E H Y
Sbjct: 824 VEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALSRLVILPYESHGY 883
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
+ARE++MHV+WET RWL KYC+SNTSD
Sbjct: 884 SARESIMHVLWETGRWLHKYCVSNTSDA 911
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/748 (71%), Positives = 632/748 (84%), Gaps = 3/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 771
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E RTLWEATNVY
Sbjct: 772 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 831
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 832 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 891
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 892 SARESIMHVLWETDRWLQKYCVPNTSDA 919
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/748 (71%), Positives = 633/748 (84%), Gaps = 3/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF+S DI LNA+F SFVW++NSTLL+ TIPSSR DPPKK +VP
Sbjct: 232 KPVVWVADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC R +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPST+YW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T+ GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TAAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVA
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAH 771
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
PS+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E RTLWEATNVY
Sbjct: 772 PSKIAVGGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 831
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 832 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 891
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
+ARE++MHV+WETDRWLQKYC+ NT+D
Sbjct: 892 SARESIMHVLWETDRWLQKYCVPNTADA 919
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|332278170|sp|Q8VZF3.2|CGEP_ARATH RecName: Full=Probable glutamyl endopeptidase, chloroplastic; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/748 (71%), Positives = 631/748 (84%), Gaps = 4/748 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 479
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 770
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E RTLWEATNVY
Sbjct: 771 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 830
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719
+EMSP ANKIKKPIL+IHGE D+ G MQ++RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 831 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 890
Query: 720 AARENVMHVIWETDRWLQKYCLSNTSDG 747
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 891 SARESIMHVLWETDRWLQKYCVPNTSDA 918
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 751 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.778 | 0.730 | 0.341 | 6.9e-94 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.778 | 0.730 | 0.341 | 6.9e-94 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.134 | 0.156 | 0.302 | 1.8e-09 | |
| TIGR_CMR|SO_4537 | 675 | SO_4537 "peptidase, putative" | 0.182 | 0.202 | 0.267 | 2.6e-09 | |
| TAIR|locus:2169789 | 746 | AT5G24260 [Arabidopsis thalian | 0.170 | 0.171 | 0.273 | 4.4e-06 | |
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.186 | 0.183 | 0.292 | 4.8e-06 | |
| UNIPROTKB|Q47UC7 | 693 | CPS_4957 "Putative uncharacter | 0.439 | 0.476 | 0.208 | 1.7e-05 | |
| TIGR_CMR|CPS_4957 | 693 | CPS_4957 "conserved hypothetic | 0.439 | 0.476 | 0.208 | 1.7e-05 | |
| UNIPROTKB|Q0C2V8 | 770 | HNE_1217 "Dipeptidyl aminopept | 0.183 | 0.179 | 0.277 | 7.2e-05 | |
| TIGR_CMR|BA_0165 | 654 | BA_0165 "prolyl oligopeptidase | 0.191 | 0.220 | 0.243 | 0.00065 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 6.9e-94, Sum P(2) = 6.9e-94
Identities = 206/603 (34%), Positives = 321/603 (53%)
Query: 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMH 195
R +LLK D+ LF TT+QL L L+G G P + SPD +Y+L +
Sbjct: 210 RTYQDLLKTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQIT 269
Query: 196 RPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255
P+S +V F +++ +G+L+ L E P +SV G R W + +
Sbjct: 270 TPFSTQVKYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAA 329
Query: 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314
TL + +A D+GD+ + RD ++ +P ++ + + R + + W ++ LAL+
Sbjct: 330 TLAFTKALDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALIT 387
Query: 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374
E K Q R + + + L +R + Y D G G + ++ +
Sbjct: 388 ERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QG 445
Query: 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN 434
+ ++ G+G TP+G+ PFL + T +W+S + +V V +N
Sbjct: 446 AKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LN 496
Query: 435 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPL 494
L+ L+++ ++ES TE +L+ K S + P +QK++I ++R DGVPL
Sbjct: 497 LDPLQLIINRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPL 554
Query: 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554
+ TLYLP Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A
Sbjct: 555 SGTLYLPANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEG 613
Query: 555 FAVLAGPSIPIIGEGDKLPNDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFM 614
FAV S+PII +GDK ND F D +IAVGGHSYGAFM
Sbjct: 614 FAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIADRKQIAVGGHSYGAFM 673
Query: 615 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKP 674
A+LLAH LF GIARSG+YN++LTPFGFQ E RT W+A ++Y +MSP +A+KIK P
Sbjct: 674 VANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDIYQQMSPFNYADKIKSP 732
Query: 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDR 734
+L+IHGE+D G FP+Q+ER FDA++G G +RLV+LPFE H Y A+E++ H+++E +
Sbjct: 733 LLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHSYTAKESLEHLLFEQSQ 792
Query: 735 WLQ 737
+L+
Sbjct: 793 FLK 795
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 6.9e-94, Sum P(2) = 6.9e-94
Identities = 206/603 (34%), Positives = 321/603 (53%)
Query: 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMH 195
R +LLK D+ LF TT+QL L L+G G P + SPD +Y+L +
Sbjct: 210 RTYQDLLKTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQIT 269
Query: 196 RPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255
P+S +V F +++ +G+L+ L E P +SV G R W + +
Sbjct: 270 TPFSTQVKYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAA 329
Query: 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314
TL + +A D+GD+ + RD ++ +P ++ + + R + + W ++ LAL+
Sbjct: 330 TLAFTKALDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALIT 387
Query: 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374
E K Q R + + + L +R + Y D G G + ++ +
Sbjct: 388 ERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QG 445
Query: 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN 434
+ ++ G+G TP+G+ PFL + T +W+S + +V V +N
Sbjct: 446 AKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LN 496
Query: 435 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPL 494
L+ L+++ ++ES TE +L+ K S + P +QK++I ++R DGVPL
Sbjct: 497 LDPLQLIINRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPL 554
Query: 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554
+ TLYLP Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A
Sbjct: 555 SGTLYLPANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEG 613
Query: 555 FAVLAGPSIPIIGEGDKLPNDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFM 614
FAV S+PII +GDK ND F D +IAVGGHSYGAFM
Sbjct: 614 FAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIADRKQIAVGGHSYGAFM 673
Query: 615 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKP 674
A+LLAH LF GIARSG+YN++LTPFGFQ E RT W+A ++Y +MSP +A+KIK P
Sbjct: 674 VANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNEERTYWQANDIYQQMSPFNYADKIKSP 732
Query: 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDR 734
+L+IHGE+D G FP+Q+ER FDA++G G +RLV+LPFE H Y A+E++ H+++E +
Sbjct: 733 LLLIHGEMDQNSGTFPLQSERLFDAIQGLGGKARLVILPFEGHSYTAKESLEHLLFEQSQ 792
Query: 735 WLQ 737
+L+
Sbjct: 793 FLK 795
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-----KTLTPF-GFQTEFRTL 652
DP RI + G SYG + A P L+ C ++ +G + ++ F ++ +
Sbjct: 496 DPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLVRSSRRFTNYEVVKEQI 555
Query: 653 WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701
+ NV E SPI+ A+KI P+L++HG+ D V + + FD LK
Sbjct: 556 GDDFNVLYERSPISKADKITIPVLLLHGDKDRVVKV--QHSREMFDELK 602
|
|
| TIGR_CMR|SO_4537 SO_4537 "peptidase, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 39/146 (26%), Positives = 64/146 (43%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN---KTLTPFGFQ-TEFRTLWE 654
D R+ GG SYG ++T+ +L PH F + + Y+ + F T F W+
Sbjct: 528 DSDRMVAGGASYGGYLTSIILGQ-PHPFKALLIHAAVYDMYAQMSADFAVHSTRFGNYWD 586
Query: 655 ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM-QAERFFDALKGHGALSRLVLLP 713
+Y +SP A P L+ HG++D +V P+ Q F L+ SR++ P
Sbjct: 587 NPELYKAISPHYFAANFNTPTLVSHGQLDYRV---PVGQGFELFRTLQTRNVESRMIYFP 643
Query: 714 FEHHVYAARENVMHVIWETDRWLQKY 739
E+H N ++ + W+ Y
Sbjct: 644 DENHWIVKPNNSIYWYNQVKDWMAHY 669
|
|
| TAIR|locus:2169789 AT5G24260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 38/139 (27%), Positives = 68/139 (48%)
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF-GFQTE-FRTLWEATN 657
P I V G SYG +++A LL P +F C + SG+ + + F TE + L
Sbjct: 606 PDHIGVYGWSYGGYLSATLLTRYPEIFNCAV--SGAPVTSWDGYDSFYTEKYMGLPTEEE 663
Query: 658 VYIEMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
Y++ S + H + K+ ++++HG +D+ V R +AL G L++ P E
Sbjct: 664 RYLKSSVMHHVGNLTDKQKLMLVHGMIDENVHF--RHTARLVNALVEAGKRYELLIFPDE 721
Query: 716 HHVYAARENVMHV---IWE 731
H+ +++ +++ IWE
Sbjct: 722 RHMPRKKKDRIYMEQRIWE 740
|
|
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 46/157 (29%), Positives = 73/157 (46%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT----LT--P-------FGF 645
DPSRI V G S+G F+T HL+ AP F AR+ N +T P +G
Sbjct: 608 DPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASMVGITDIPDWCFFEAYGD 667
Query: 646 QTEFRTLWEATNV--YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703
Q+ + A ++ + +MSPI+H +K+K P L + G D +V + ++ ALK
Sbjct: 668 QSHYTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDLRVPI--SNGFQYVRALKEK 725
Query: 704 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740
G ++++ P ++H + W KYC
Sbjct: 726 GVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYC 762
|
|
| UNIPROTKB|Q47UC7 CPS_4957 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 74/355 (20%), Positives = 129/355 (36%)
Query: 397 DLFDI-NTGSKERIWE--SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQY 453
+LF I N G++ + + KY A F G I+ + ++ + +
Sbjct: 324 ELFFIANIGTQSVVAKIKPGSNKYKTVVDAGKFIAGNLSISNSDKTVVVKGHTSQHPNEV 383
Query: 454 HILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLP 513
IL KK +++T+ +A ++E + + +DGV + L P Y + PL
Sbjct: 384 FILRG--KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDYKNGQRYPLI 441
Query: 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573
PE + KD P + + ++ + R + G +G+ D
Sbjct: 442 MSVHGGPESH-DKDGWMTAYSRPGQLAA-AQGYAVFYPNYRGSTGKGVDYSKLGQND--- 496
Query: 574 NDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633
+ + ++ + G SYG + +A F +
Sbjct: 497 ---YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFV 553
Query: 634 GSYNKTLTPFG---FQTEFRTL------WEATNVYIEMSPITHANKIKKPILIIHGEVDD 684
G N+ L+ FG E + W+ Y+E SPI + + P+LI+HG+ D
Sbjct: 554 GISNQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADP 612
Query: 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+V P Q+ + +K HG RLV P E H RW+ Y
Sbjct: 613 RV--HPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| TIGR_CMR|CPS_4957 CPS_4957 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 74/355 (20%), Positives = 129/355 (36%)
Query: 397 DLFDI-NTGSKERIWE--SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQY 453
+LF I N G++ + + KY A F G I+ + ++ + +
Sbjct: 324 ELFFIANIGTQSVVAKIKPGSNKYKTVVDAGKFIAGNLSISNSDKTVVVKGHTSQHPNEV 383
Query: 454 HILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLP 513
IL KK +++T+ +A ++E + + +DGV + L P Y + PL
Sbjct: 384 FILRG--KKQTRLTDSNVWLNDIALAKQENLTIKARDGVEIGGVLVYPLDYKNGQRYPLI 441
Query: 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573
PE + KD P + + ++ + R + G +G+ D
Sbjct: 442 MSVHGGPESH-DKDGWMTAYSRPGQLAA-AQGYAVFYPNYRGSTGKGVDYSKLGQND--- 496
Query: 574 NDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633
+ + ++ + G SYG + +A F +
Sbjct: 497 ---YAGKEFDDLVDLKNHLVNIGLVNEKKVGITGGSYGGYASAWGATKLTKHFAASVMFV 553
Query: 634 GSYNKTLTPFG---FQTEFRTL------WEATNVYIEMSPITHANKIKKPILIIHGEVDD 684
G N+ L+ FG E + W+ Y+E SPI + + P+LI+HG+ D
Sbjct: 554 GISNQ-LSKFGTTDISNEMHLVHARSYPWDKWQWYLERSPIYWVEQSETPLLIMHGKADP 612
Query: 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+V P Q+ + +K HG RLV P E H RW+ Y
Sbjct: 613 RV--HPAQSMEMYRYMKVHGKTVRLVYYPGEGHGNKRAAAKYDYSLRLMRWMDNY 665
|
|
| UNIPROTKB|Q0C2V8 HNE_1217 "Dipeptidyl aminopeptidase IV" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 108 (43.1 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 40/144 (27%), Positives = 59/144 (40%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATN 657
D RIA+ G SYG +M A AP F IA + + +L F TE N
Sbjct: 624 DGERIAIQGWSYGGYMALMTAAQAPEGTFAAAIAGASVTDWSLYDT-FYTERYMGTPENN 682
Query: 658 V--YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
Y S H + +K P+L+IHG DD V F R L+ L+ P +
Sbjct: 683 AEGYHASSVFAHIDGLKGPLLLIHGMADDNV-TFD-NTTRLMAELQARSQPFELMAYPGQ 740
Query: 716 HHVYAARENVMHVIWETDRWLQKY 739
H +H++ +L+++
Sbjct: 741 RHGIQGEALQVHLMRTRMAFLERH 764
|
|
| TIGR_CMR|BA_0165 BA_0165 "prolyl oligopeptidase family protein, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00065, Sum P(3) = 0.00064
Identities = 38/156 (24%), Positives = 64/156 (41%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCC----GIAR-SGSYNKTLTPFGFQTEF-RTL 652
D R+ V G S G +++A + GI S Y T P+ + T
Sbjct: 498 DKDRVGVMGWSNGGYISAFCSTFSSRFKAISVGGGITNWSTHYVNTDIPYFIRMYLGNTP 557
Query: 653 WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
W ++Y SP+T+ P LI HGE D ++ + A LK + L++
Sbjct: 558 WNDPDIYKRTSPMTYIKSACTPTLIQHGEKDARIPI--TNAYELHQGLKDMEVDTELII- 614
Query: 713 PFEHHVYAARENVMHV-IWETD-RWLQKYCLSNTSD 746
F+ Y++ + +HV I + + W Y L + +
Sbjct: 615 -FKGMAYSSDQPGVHVAIMKQNLMWFSHYILGESME 649
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.7117 | 0.9893 | 0.7921 | yes | no |
| Q8VZF3 | CGEP_ARATH | 3, ., 4, ., 2, 1, ., - | 0.7165 | 0.9906 | 0.775 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00028112001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (884 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00015534001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (725 aa) | • | 0.422 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 751 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 2e-43 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 2e-25 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 1e-10 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 1e-08 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 8e-08 | |
| COG0400 | 207 | COG0400, COG0400, Predicted esterase [General func | 8e-07 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 3e-05 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 1e-04 | |
| PRK10566 | 249 | PRK10566, PRK10566, esterase; Provisional | 4e-04 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 4e-04 | |
| COG1073 | 299 | COG1073, COG1073, Hydrolases of the alpha/beta sup | 0.002 | |
| pfam02129 | 265 | pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptida | 0.002 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 86/323 (26%), Positives = 138/323 (42%), Gaps = 34/323 (10%)
Query: 431 EDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRK 489
+++ K+ + S TE I + + +++T+ + L + E + Y+
Sbjct: 316 PGFDVDGRKLALAYSSPTE--PPEIYLYDRGEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
DG + LY PPG+D K PL + + + G P+ G + +
Sbjct: 374 DGETIHGWLYKPPGFDPRKKYPL--IVYIH--------------GGPSAQVGYSFNPEIQ 417
Query: 550 FLARR-FAVLAGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAV 605
LA +AVLA G G + + + AAV+ +V+ + DP RI +
Sbjct: 418 VLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGI 477
Query: 606 GGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT--------N 657
G SYG +MT P F +A +G + L R E
Sbjct: 478 TGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDRE 536
Query: 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
Y + SPI +A+ IK P+L+IHGE DD+V + QAE+ DALK G LV+ P E H
Sbjct: 537 KYEDRSPIFYADNIKTPLLLIHGEEDDRVPIE--QAEQLVDALKRKGKPVELVVFPDEGH 594
Query: 718 VYAARENVMHVIWETDRWLQKYC 740
++ EN + V+ E W +++
Sbjct: 595 GFSRPENRVKVLKEILDWFKRHL 617
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 569 GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628
G + + AA E ++ +G DP R+A+ G SYG ++T L P LF
Sbjct: 36 GKGDLGQNEFDDFI----AAAEYLIAQGYVDPDRLAIWGGSYGGYLTGAALNQRPDLFKA 91
Query: 629 GIARSG-----SYNKTLTPFGFQ-TEFRTLWEATNVYIEMSPITHA--NKIKKPILIIHG 680
+A +Y +PF + E+ W+ Y +SP + K P+L+IHG
Sbjct: 92 AVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHG 151
Query: 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
DD+V P +A + AL+ G L++ P E H N +L K
Sbjct: 152 LHDDRV--PPAEALKLVAALQAKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-10
Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 15/170 (8%)
Query: 550 FLARRFAVLAGPSIPIIGEGDKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGH 608
LA + VLA P +P G+ D P + +E + A ++ + + + GH
Sbjct: 20 ALAAGYRVLA-PDLPGHGDSDGPPRTPYSLEDDAADLAALLDAL------GLGPVVLVGH 72
Query: 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA 668
S G + A P + + L L ++
Sbjct: 73 SLGGAVALAAAARRPERVAGLVL-ISPPLRDLEELLAADAAALLALLRAALLDADLREAL 131
Query: 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718
++ P+L+IHGE D V P A R +AL G + LV+LP H+
Sbjct: 132 ARLTVPVLVIHGEDDPLV--PPEAARRLAEALPG----AELVVLPGAGHL 175
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 30/131 (22%)
Query: 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP 642
S E V+ DP RI + GHS G + L A P + + +G
Sbjct: 40 SLGAPDAEAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPP----- 94
Query: 643 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702
+ K+ P+LIIHG D V P +AE AL G
Sbjct: 95 --------------------DALDDLAKLTVPVLIIHGTRDGVVP--PEEAEALAAALPG 132
Query: 703 HGALSRLVLLP 713
+ LV++
Sbjct: 133 P---AELVVIE 140
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 41/192 (21%), Positives = 64/192 (33%), Gaps = 43/192 (22%)
Query: 552 ARRFA-----VLA-------GPSIPIIGEGDKLPNDRF----VEQLVSSAEAAVEEVVRR 595
ARR A VLA G I E +L ++++ +AA++ + R+
Sbjct: 47 ARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQ 106
Query: 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEA 655
DP RI V G G + AP + + ++ +G T
Sbjct: 107 PQVDPKRIGVVGFCMGGGLALLAATRAP-----EVKAAVAF------YGGLIADDTA--- 152
Query: 656 TNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715
A KIK P+L+ D + + A AL+ G L + P
Sbjct: 153 -----------DAPKIKVPVLLHLAGEDPYIPAADVDA--LAAALEDAGVKVDLEIYPGA 199
Query: 716 HHVYAARENVMH 727
H +A H
Sbjct: 200 GHGFANDRADYH 211
|
Length = 236 |
| >gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 26/120 (21%)
Query: 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF 645
+EE+ D SRI + G S GA + L P LF I SG P
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGML-----PL-- 136
Query: 646 QTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705
E + PIL+ HG D V L AE + L GA
Sbjct: 137 ---------------EPELLPDLAGT--PILLSHGTEDPVVPLA--LAEALAEYLTASGA 177
|
Length = 207 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 49/291 (16%), Positives = 80/291 (27%), Gaps = 55/291 (18%)
Query: 474 PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 533
P + E + G + +Y P D+ P + + + G V
Sbjct: 44 PLPPATSPEDVALAGPSGDGVPVRVYRP---DRKAAATAPVVLYLHG--------GGWVL 92
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593
GS + + + A V++ + E P +E ++
Sbjct: 93 GSLRTHDALV---ARLAAAAGAVVVS-VDYRLAPEH---PFPAALEDAYAAYRWLRANAA 145
Query: 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-------------------LFCCGIARSG 634
G DPSRIAV G S G + LA A
Sbjct: 146 ELG-IDPSRIAVAGDSAGGHLAL-ALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGY 203
Query: 635 SYNKTLTPFGFQTEFRTLWEATNV---YIEMSPITHANKIKK--PILIIHGEVDDKVGLF 689
L F L+ E SP+ ++ + P LI E D
Sbjct: 204 GEADLLDAAAILAWFADLYLGAAPDREDPEASPL-ASDDLSGLPPTLIQTAEFD----PL 258
Query: 690 PMQAERFFDALKGHGALSRLVLLPFEHHVY------AARENVMHVIWETDR 734
+ E + + L+ G L + P H + AR + +
Sbjct: 259 RDEGEAYAERLRAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309
|
Length = 312 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 16/155 (10%)
Query: 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT 545
Y G L LY P Y K P + + + D +
Sbjct: 166 YDESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSG---------I 215
Query: 546 SSLIFLARRFA--VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRI 603
++ + VLA PI + ++ +E++ + +E + D SRI
Sbjct: 216 GAIAWAGPEDQCFVLAPQYNPIFADSEEKTLLYLIEKI----DLILEVLASTYNIDRSRI 271
Query: 604 AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638
V G S G F T L P F + +G ++
Sbjct: 272 YVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR 306
|
Length = 387 |
| >gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 589 VEEVVRRGVADPSRIAVGGHSYGAFMTA-HLLAHAPHLFCCG-IARSG---SYNKTLTP- 642
+ G R+AVGG S G MTA ++A P + C + SG S +TL P
Sbjct: 95 RAAIREEGWLLDDRLAVGGASMGG-MTALGIMARHPWVKCVASLMGSGYFTSLARTLFPP 153
Query: 643 -----FGFQTEFRTL------WEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFP 690
Q EF + WE T ++ +P+L+ HG DD V
Sbjct: 154 LIPETAAQQAEFNNIVAPLAEWEVT---------HQLEQLADRPLLLWHGLADDVVP--A 202
Query: 691 MQAERFFDALKGHGALSRLVLL 712
++ R AL+ G L L
Sbjct: 203 AESLRLQQALRERGLDKNLTCL 224
|
Length = 249 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636
+E +V AA+ + + D ++ V G G + A G+ + S+
Sbjct: 74 RMEAVVDDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLA---FLLAARN---GVDAAVSF 127
Query: 637 NKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA-ER 695
G + P+ A IK PIL GE D P +A +
Sbjct: 128 Y----GTGPE----------------PPLDEAPAIKAPILAHFGEEDP---FVPAEARDL 164
Query: 696 FFDALKGHGALSRLVLLPFEHHVYAAREN 724
+AL+ L + P H +AA
Sbjct: 165 LEEALRAANVDHELHVYPGAGHAFAADGR 193
|
Length = 215 |
| >gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 5/148 (3%)
Query: 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW 653
D SRI V G S G + LL P L I + + TL
Sbjct: 153 GPTRLDASRIVVWGESLGGALALLLLGANPELARELIDYLITPGGFAPLPAPEAPLDTLP 212
Query: 654 EATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
+ + + P A KI P+L++HGE D+ V L AE ++A + L +
Sbjct: 213 LRAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLR--DAEDLYEAAR-ERPKKLLFVP 269
Query: 713 PFEH-HVYAARENVMHVIWETDRWLQKY 739
H +Y V + + +L+++
Sbjct: 270 GGGHIDLYDNPPAVEQALDKLAEFLERH 297
|
Length = 299 |
| >gnl|CDD|216890 pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 663 SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716
+ + A+K+K P+L++ G D + ++AL+ G +L+L P+ H
Sbjct: 213 NYLEDADKVKAPVLLVGGWYDW---NVKNGVIQLYEALRAPGVKKKLILGPWTH 263
|
Length = 265 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 751 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.97 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 99.97 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.94 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.9 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.9 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.87 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.87 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.87 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.86 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.86 | |
| PRK10566 | 249 | esterase; Provisional | 99.85 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.85 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.85 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.84 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.83 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.83 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.83 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.82 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.82 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.82 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.81 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.8 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.78 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.78 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.78 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.77 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.77 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.76 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.75 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.74 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.7 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.7 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.69 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.69 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.69 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.67 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.66 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.66 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.66 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.65 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.65 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.64 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.64 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.64 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.63 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.62 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.62 | |
| PLN02511 | 388 | hydrolase | 99.62 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.62 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.62 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.61 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.61 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.6 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.59 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.59 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.59 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.58 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.58 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.58 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.57 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.56 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.56 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.56 | |
| PLN00021 | 313 | chlorophyllase | 99.55 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.55 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.54 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.53 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.53 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.53 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.52 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.52 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.51 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.51 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.51 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.51 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.5 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.5 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.5 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.5 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.5 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.48 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.48 | |
| PLN02578 | 354 | hydrolase | 99.47 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.46 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.46 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.46 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.46 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.45 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.45 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.44 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.44 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.43 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.42 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.42 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.42 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.42 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.41 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.41 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.4 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.4 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.38 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.37 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.37 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.37 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.36 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.36 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.35 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.35 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.35 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.35 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.34 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.34 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.32 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.28 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.28 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.28 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.28 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.27 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.27 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.27 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.26 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.25 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.25 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.24 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.22 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.22 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.22 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.21 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.21 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.2 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.19 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.18 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.18 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.17 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.17 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.17 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.15 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.11 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.11 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.1 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.09 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.09 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.09 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 99.09 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.08 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.08 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.07 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.07 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| PTZ00421 | 493 | coronin; Provisional | 99.06 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.06 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.04 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.04 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 99.02 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.01 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.99 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.98 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.97 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.97 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.95 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.92 | |
| PTZ00420 | 568 | coronin; Provisional | 98.91 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.87 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.87 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.86 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.86 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.85 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.83 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.83 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.82 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.81 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.78 | |
| PRK10115 | 686 | protease 2; Provisional | 98.78 | |
| PTZ00421 | 493 | coronin; Provisional | 98.77 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.76 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.76 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.76 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.75 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.75 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.75 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.74 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.73 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.73 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.69 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.69 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.68 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.67 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.67 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.64 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.63 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.63 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.62 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.62 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.62 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.6 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.58 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.58 | |
| PTZ00420 | 568 | coronin; Provisional | 98.58 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.58 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.57 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.56 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.56 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.55 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.52 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.52 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.52 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.51 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.51 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.49 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.49 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.48 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.47 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.47 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.44 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.44 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.42 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.41 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.41 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.4 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.4 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.36 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.35 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.31 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.3 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.29 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.28 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.25 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.22 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.21 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.21 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.19 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.18 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.17 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.17 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.17 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.17 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 98.16 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.16 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.15 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.11 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.09 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.08 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.07 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.06 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.05 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.05 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.04 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.04 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 98.04 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.01 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.0 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.97 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.95 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.95 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.95 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.94 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.91 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.9 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.9 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.88 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.86 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.84 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.83 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.81 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.8 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.79 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.79 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.75 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.73 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.73 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.73 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.68 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.67 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.66 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.65 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.61 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.6 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.6 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.59 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.58 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.57 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.52 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.52 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.49 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.48 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.44 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.43 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.43 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.42 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.42 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.41 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.4 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.35 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.34 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.34 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.33 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.29 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.28 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.28 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 97.25 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.22 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.22 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.22 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.22 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.2 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.19 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.18 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.16 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.12 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.12 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.12 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.12 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.07 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.07 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.06 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.05 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 97.01 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.98 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.98 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 96.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.83 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 96.8 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.75 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.68 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.62 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.55 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.52 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.51 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.5 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.45 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 96.44 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.41 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 96.38 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.33 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 96.33 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.31 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.29 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.27 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.27 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.27 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.19 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.18 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.17 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.14 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.14 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 96.13 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.1 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.1 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.04 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 96.01 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 95.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 95.86 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.73 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.7 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.65 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 95.54 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.49 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.45 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 95.43 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 95.43 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 95.42 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.32 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.29 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.24 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.22 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 95.15 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.03 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.03 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 95.03 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 94.86 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.69 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 94.56 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 94.32 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 94.32 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 94.29 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.28 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.24 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 94.21 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.09 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 93.8 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.78 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.64 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 93.45 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 93.42 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 93.36 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 93.11 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.1 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.08 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.05 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 93.01 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 92.97 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.96 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 92.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.65 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.42 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 92.35 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 92.3 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 92.26 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 92.23 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 92.15 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 92.12 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 92.1 | |
| PLN02454 | 414 | triacylglycerol lipase | 92.06 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 91.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 91.84 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 91.72 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 91.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.63 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 91.6 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.41 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.32 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 91.23 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 91.23 | |
| PLN02408 | 365 | phospholipase A1 | 90.81 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.72 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.5 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 90.36 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 90.28 | |
| PLN02571 | 413 | triacylglycerol lipase | 90.25 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.16 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 90.08 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=377.20 Aligned_cols=573 Identities=21% Similarity=0.219 Sum_probs=375.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..|..+|+|+.++|+...- +.........+|+.+... .+.++.+.. ...+.|||||+.++|.......
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~- 83 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGL-DFLKPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGGR- 83 (620)
T ss_pred cccCcccCCCCceeEEeeccc-cccccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCCC-
Confidence 477899999999999998621 111225668899977544 444444332 5678999999999998621111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (751)
..++|+++.+| .++.. ..+....|+|+|+.++
T Consensus 84 --------------------------------------------~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~ 116 (620)
T COG1506 84 --------------------------------------------VAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIA 116 (620)
T ss_pred --------------------------------------------cceEEEEecCC---ceeeeecccccceeCCCCCeEE
Confidence 15889988774 33323 5667899999999999
Q ss_pred EEEecCCcccccc--------------cCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 191 ITSMHRPYSYKVP--------------CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 191 ~~~~~~~~~~~~~--------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
+............ .+.....++++|..+ .... .......+..+.++++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~- 181 (620)
T COG1506 117 FLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIK-------------LGLGNLDVVSFATDGDGRL- 181 (620)
T ss_pred EEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-cccc-------------ccCCCCceeeeeeCCCCce-
Confidence 9433221100000 000112334444333 1111 1111222334455555554
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc----cceeEEEecCC
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT----SQTRTWLVCPG 331 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~----~~~~l~~~~~~ 331 (751)
++.......... .....++.... .+....++.....+. +.|.++|+.+++...... ....+++.+.+
T Consensus 182 ~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (620)
T COG1506 182 VASIRLDDDADP-----WVTNLYVLIEG---NGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGE 253 (620)
T ss_pred eEEeeeccccCC-----ceEeeEEEecC---CCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEecc
Confidence 444332211011 11122222221 345556666666677 999999998887764332 22345555522
Q ss_pred CCCCccee-eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 332 SKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 332 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.+ .... +...+ ... +.....+.-++..++|...+. .....+...+..++. ..+.
T Consensus 254 ~~--~~d~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~ 308 (620)
T COG1506 254 LG--EVDGDLSSGD--DTR---GAWAVEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGL 308 (620)
T ss_pred cc--ccceeeccCC--ccc---CcHHhccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeee
Confidence 21 1111 11111 000 000012234555566655321 111223333322222 2222
Q ss_pred eccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCC-CCccCCceEEEEEEcC
Q 004475 411 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRK 489 (751)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~-~~~~~~~~e~i~~~~~ 489 (751)
..+. .....|+.+++.+++..+++..|+++|+.+. ++..+++...... .+....+.|.++++..
T Consensus 309 ~~~~-------------~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 373 (620)
T COG1506 309 SGDD-------------GGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373 (620)
T ss_pred cCCC-------------ceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcC
Confidence 2221 1113456689999999999999999999997 5666666655443 3455678999999999
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|.+|.+++++|.++++.++ +|+||++||||....+ .......+.|+++||+|+.+++++..|+|
T Consensus 374 dG~~i~~~l~~P~~~~~~k~--yP~i~~~hGGP~~~~~-------------~~~~~~~q~~~~~G~~V~~~n~RGS~GyG 438 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKK--YPLIVYIHGGPSAQVG-------------YSFNPEIQVLASAGYAVLAPNYRGSTGYG 438 (620)
T ss_pred CCCEEEEEEecCCCCCCCCC--CCEEEEeCCCCccccc-------------cccchhhHHHhcCCeEEEEeCCCCCCccH
Confidence 99999999999999877654 9999999999743211 12235677889999999999999999998
Q ss_pred CCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 570 DKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 570 ~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
..+.. ..+.....+|+.++++++.+.+.+|++||+|+|+|+||+|+++++.+.| .|+++++..+.+++........
T Consensus 439 ~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~ 517 (620)
T COG1506 439 REFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGEST 517 (620)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccc
Confidence 86433 2234456899999999999999999999999999999999999999997 8888888888766443322211
Q ss_pred cc--------cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 647 TE--------FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 647 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
.. ...++.+.+.|...+|+.+++++++|+|+|||++|..|| .+++++++++|+.+|+++++++||+++|.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~ 595 (620)
T COG1506 518 EGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHG 595 (620)
T ss_pred hhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcC
Confidence 11 111111577899999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+...++....++++++||+++++.
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 596 FSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCchhHHHHHHHHHHHHHHHhcC
Confidence 998788889999999999999864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=347.61 Aligned_cols=566 Identities=14% Similarity=0.064 Sum_probs=364.5
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcC-C---CCeeeccCCCCc---cccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-T---GEAKPLFESPDI---CLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-~---g~~~~lt~~~~~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
..|.+++|..... ....-||..... + ++.+.|.+.... .-...+..+.|||||++|+|.......
T Consensus 79 ~~g~~~y~~~~~~------g~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~-- 150 (686)
T PRK10115 79 IKNGYRYRHIYEP------GCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSR-- 150 (686)
T ss_pred EECCEEEEEEEcC------CCccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCc--
Confidence 4577888876421 223455544432 2 223444332211 001235678999999999998543222
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC--ceecCCCceEEeeeeCCCCceE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~--~~~lt~~~~~~~~~~SpDG~~i 189 (751)
...+|+++++ +|+ ...+.... ..++|++||+.|
T Consensus 151 ------------------------------------------E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~ 186 (686)
T PRK10115 151 ------------------------------------------RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTF 186 (686)
T ss_pred ------------------------------------------EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEE
Confidence 2268999999 775 33333212 458999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+..... .....++|++++.++ +.+.|........ . -....+.|+++ +++....
T Consensus 187 ~y~~~~~~-------~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~----------~-~~~~~s~d~~~-l~i~~~~---- 243 (686)
T PRK10115 187 YYVRKHPV-------TLLPYQVWRHTIGTPASQDELVYEEKDDTF----------Y-VSLHKTTSKHY-VVIHLAS---- 243 (686)
T ss_pred EEEEecCC-------CCCCCEEEEEECCCChhHCeEEEeeCCCCE----------E-EEEEEcCCCCE-EEEEEEC----
Confidence 99887421 012468999999887 4444433211100 0 02223448888 4443211
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc-
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE- 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~- 346 (751)
.....+++++.+.. .+....+..............+..|++.++.......|..+++.+. ...+.+......
T Consensus 244 -----~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~ 316 (686)
T PRK10115 244 -----ATTSEVLLLDAELA-DAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENI 316 (686)
T ss_pred -----CccccEEEEECcCC-CCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCC
Confidence 12235666664211 2233444433322221112334667777766555678888888742 334455443211
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe-eccchhhhhceeeee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW-ESNREKYFETAVALV 425 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~~~~~ 425 (751)
.+.. +.++ ++.|++...+ .....|+++++.+++...|. .... .....
T Consensus 317 ~i~~------~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~------~~~~~ 364 (686)
T PRK10115 317 MLEG------FTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA------YVTWI 364 (686)
T ss_pred EEEE------EEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc------eEeee
Confidence 1111 3344 4566666632 23446888888766555553 1111 11111
Q ss_pred cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCC
Q 004475 426 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYD 505 (751)
Q Consensus 426 ~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~ 505 (751)
. .+.+++++.+++..+++..|+.+|.+|+.+++.+.|+.......+...+.+|++.+++.+|.+|+++++.++...
T Consensus 365 ~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~ 440 (686)
T PRK10115 365 A----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHF 440 (686)
T ss_pred c----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCC
Confidence 0 123367889999999999999999999999888888876533223335689999999999999999766654422
Q ss_pred CCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHH
Q 004475 506 QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLV 582 (751)
Q Consensus 506 ~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~ 582 (751)
. .++.|+||++|||+..+ +...+....+.|+++||+|+.++.+++.|+|+...... ......
T Consensus 441 ~--~~~~P~ll~~hGg~~~~-------------~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~ 505 (686)
T PRK10115 441 R--KGHNPLLVYGYGSYGAS-------------IDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTF 505 (686)
T ss_pred C--CCCCCEEEEEECCCCCC-------------CCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcH
Confidence 2 23479999999976322 11112244568899999999999999999987533211 112458
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------c--cCcccccccchh
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------P--FGFQTEFRTLWE 654 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~------~--~~~~~~~~~~~~ 654 (751)
+|+.+++++|.+++.+|++|++++|.|+||+|+..++.++|++|+|+|+..|++|+... + .....+.+.++.
T Consensus 506 ~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~ 585 (686)
T PRK10115 506 NDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQD 585 (686)
T ss_pred HHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999885421 1 111122344442
Q ss_pred h--HHHHHhcCcccccCCCCCC-EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe---CCCCCcCCccccHHHH
Q 004475 655 A--TNVYIEMSPITHANKIKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL---PFEHHVYAARENVMHV 728 (751)
Q Consensus 655 ~--~~~~~~~~~~~~~~~~~~P-~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~~~~~~~~~ 728 (751)
. .+.+..+||+.++++++.| +||+||++|.+|| +.++.+++++|++.+.+++++++ +++||+. .......
T Consensus 586 ~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~ 661 (686)
T PRK10115 586 PQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKS 661 (686)
T ss_pred HHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHH
Confidence 2 3445679999999999989 6788999999999 99999999999999988888888 9999984 3333333
Q ss_pred ---HHHHHHHHHHHhcC
Q 004475 729 ---IWETDRWLQKYCLS 742 (751)
Q Consensus 729 ---~~~~~~fl~~~l~~ 742 (751)
......|+-..+..
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33457888777764
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=262.51 Aligned_cols=393 Identities=22% Similarity=0.239 Sum_probs=264.8
Q ss_pred EEEecCCceEEEee-eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 VSWCDDSLALVNET-WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 ~~~spdg~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
+.++.|+....+.. .......++.......+ +.++.++.+...-... +.++.|.+.++|.+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~-~~~~~lt~g~w~v~~i------~~~~~~~~~i~f~~~~--------- 408 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNG-SEPRMLTSGNWEVTSI------LGYDKDSNRIYFDAYE--------- 408 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCC-CccccccccceEEEEe------ccccCCCceEEEEecC---------
Confidence 56777765443333 22222466766666664 3445555544332111 4466788888888732
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCe-EEEEEcCC
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPL 460 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~-l~~~~~~~ 460 (751)
......+|+.+++.++....++..... ....+. ...++...+.++.....+..|-. +-+.....
T Consensus 409 -------~~~~~~~ly~i~~~~~~~~~lt~~~~~----~~~~~~----~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 409 -------EDPSERHLYSISLGSGTVESLTCSLIT----GPCTYL----SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred -------CCCCceEEEEEEccccccccccccCCC----CcceEE----EEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 124567899999988776665443321 011111 14566777778877777665532 22222111
Q ss_pred Cc-eeEeecCCCCCC----CccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCC
Q 004475 461 KK-SSQITNFPHPYP----TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS 535 (751)
Q Consensus 461 g~-~~~lt~~~~~~~----~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~ 535 (751)
-+ ...|. .+.... .......+..++.. +|....+.+.+|+++.+.+ ++|+||.+|||+.. +.+..
T Consensus 474 ~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~- 543 (755)
T KOG2100|consen 474 SKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTS- 543 (755)
T ss_pred ceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeee-
Confidence 11 11111 111111 11112223333332 7888999999999988766 59999999998731 11111
Q ss_pred CCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH
Q 004475 536 PNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA 612 (751)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG 612 (751)
.+ .. .+....+..+|++|+.+|+++..|+|.... ........++|...+++++.+++.+|++||+|+|+|+||
T Consensus 544 --~~-~~-~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGG 619 (755)
T KOG2100|consen 544 --KF-SV-DWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGG 619 (755)
T ss_pred --eE-Ee-cHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHH
Confidence 11 11 122335567999999988888888877632 223334568999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CceeEEEEccCCCCCCCCccCccccc-ccchhhHHHHHhcCcccccCCCCCCE-EEEEcCCCCCCCCC
Q 004475 613 FMTAHLLAHAP-HLFCCGIARSGSYNKTLTPFGFQTEF-RTLWEATNVYIEMSPITHANKIKKPI-LIIHGEVDDKVGLF 689 (751)
Q Consensus 613 ~~a~~~a~~~p-~~~~~~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~-li~~G~~D~~vp~~ 689 (751)
+++++++.++| +.|+|+++.+|++|+........... +.+......|.+.++..++..++.|. |++||+.|..|+
T Consensus 620 y~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh-- 697 (755)
T KOG2100|consen 620 YLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH-- 697 (755)
T ss_pred HHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--
Confidence 99999999998 67888899999999774332222222 33444445588889999999888776 999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
++++.+++++|+.+|+++++.+||+.+|.+.......+.+..+..||..++..
T Consensus 698 ~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 698 FQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999988787889999999999966653
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-28 Score=242.35 Aligned_cols=323 Identities=19% Similarity=0.233 Sum_probs=233.2
Q ss_pred CCCceeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 391 GNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 391 ~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
....+||+.... .|+..+++...- .. .+.++-+=+.++...++-..|+.+.+..+..++...+...
T Consensus 527 PlE~hLyvvsye~~g~~~rlt~~g~-------sh------~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q 593 (867)
T KOG2281|consen 527 PLEHHLYVVSYENPGEIARLTEPGY-------SH------SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQ 593 (867)
T ss_pred CceeeEEEEEEecCCceeeccCCCc-------cc------chhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccch
Confidence 356689988887 788877754321 00 0122333344555566666777777777655432222111
Q ss_pred C--------CCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCC
Q 004475 470 P--------HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541 (751)
Q Consensus 470 ~--------~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~ 541 (751)
. ...+..+-...|-|.|.+..|..+.|.+|.|.+++++++ +|+|++++|||.. |+ --+.|.+
T Consensus 594 ~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk--Yptvl~VYGGP~V------Ql--Vnnsfkg 663 (867)
T KOG2281|consen 594 VSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK--YPTVLNVYGGPGV------QL--VNNSFKG 663 (867)
T ss_pred hhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC--CceEEEEcCCCce------EE--eeccccc
Confidence 1 011112223447788888888899999999999998875 9999999999732 22 2366776
Q ss_pred CCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHH
Q 004475 542 MTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 542 ~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~ 617 (751)
........|+++||+|+.+|.++..-.|..+.. .....-.++|..+.+++|.++. .+|.+||+|.|+|+||+|+++
T Consensus 664 i~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm 743 (867)
T KOG2281|consen 664 IQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLM 743 (867)
T ss_pred eehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHH
Confidence 666667789999999999666655544443211 1122344799999999999984 899999999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCccccc-ccchhhHHHHHhcCcccccCCCC---CCEEEEEcCCCCCCCCChHHH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF-RTLWEATNVYIEMSPITHANKIK---KPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~P~li~~G~~D~~vp~~~~~~ 693 (751)
+++++|+.|+++|+.+|+.++.....++.... +.+-.....|..-+...++.++. ..+|++||.-|..|. +.+.
T Consensus 744 ~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVH--F~Ht 821 (867)
T KOG2281|consen 744 GLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVH--FAHT 821 (867)
T ss_pred HhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchh--hhhH
Confidence 99999999999999999988766554443222 22223334455556656666552 449999999999998 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
-.+..+|.++|++.++++||+..|.+...+....+-.+++.|+++
T Consensus 822 s~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 822 SRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999998888888888889999976
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-24 Score=222.87 Aligned_cols=548 Identities=14% Similarity=0.090 Sum_probs=340.8
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEE-EcCCCC-eeeccCCCCccc---cceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIA-DAETGE-AKPLFESPDICL---NAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~-~~~~g~-~~~lt~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..+|.+-+|.+... ....-+|.. ...++. .+.|.+...... ...+..++-|||++.|++.-.....
T Consensus 82 ~~~~~~~Yy~r~~~------g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~--- 152 (682)
T COG1770 82 YRKGPYEYYSRTEE------GKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGD--- 152 (682)
T ss_pred cccCCeeEEEEecC------CCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccc---
Confidence 45677777765421 122233333 233433 444444322110 1124577889999999998543221
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--eecCCCceEEeeeeCCCCceEE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
....|.+.|+ +|+. ..++ ....+++|.+||+.++
T Consensus 153 -----------------------------------------e~y~lr~kdL~tg~~~~d~i~--~~~~~~~Wa~d~~~lf 189 (682)
T COG1770 153 -----------------------------------------EQYTLRFKDLATGEELPDEIT--NTSGSFAWAADGKTLF 189 (682)
T ss_pred -----------------------------------------cEEEEEEEecccccccchhhc--ccccceEEecCCCeEE
Confidence 1256788888 7742 2222 2355799999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCC--ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.+... ....++...+.+ .+-+.+...+-... .-.+.=|...++ |++..
T Consensus 190 Yt~~d~~~--------rp~kv~~h~~gt~~~~d~lvyeE~d~~f-----------~~~v~~s~s~~y-i~i~~------- 242 (682)
T COG1770 190 YTRLDENH--------RPDKVWRHRLGTPGSSDELVYEEKDDRF-----------FLSVGRSRSEAY-IVISL------- 242 (682)
T ss_pred EEEEcCCC--------CcceEEEEecCCCCCcceEEEEcCCCcE-----------EEEeeeccCCce-EEEEc-------
Confidence 99876421 246677777766 44444433221111 012233444455 33321
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 348 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 348 (751)
......++++++.+ ..+..++.+......+......-|..+++.+|..+.+-.|+...........+.+..+.....
T Consensus 243 --~~~~tsE~~ll~a~-~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~ 319 (682)
T COG1770 243 --GSHITSEVRLLDAD-DPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVR 319 (682)
T ss_pred --CCCcceeEEEEecC-CCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCce
Confidence 11233588898885 334556666554433321222337778887876665667877776221122333333322211
Q ss_pred cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCC
Q 004475 349 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428 (751)
Q Consensus 349 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 428 (751)
. -.++-=..+|+... +....++|++++.++++...+.-.+.. + ...+.
T Consensus 320 l-------~~~~~f~~~lVl~e------------------R~~glp~v~v~~~~~~~~~~i~f~~~a-y---~~~l~--- 367 (682)
T COG1770 320 L-------EGVDLFADHLVLLE------------------RQEGLPRVVVRDRKTGEERGIAFDDEA-Y---SAGLS--- 367 (682)
T ss_pred e-------eeeeeeccEEEEEe------------------cccCCceEEEEecCCCceeeEEecchh-h---hcccc---
Confidence 1 12333344555544 123456899999988887665333321 1 11111
Q ss_pred cceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCC-CCccCCceEEEEEEcCCCceEEEEEEcCCCCCCC
Q 004475 429 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQS 507 (751)
Q Consensus 429 ~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~-~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~ 507 (751)
.+-.+++..|.+.+++.+.|.+++.+|+.+++.+.|-+..-+. .+...+..+++..+..+|..|+..|+.-.+..
T Consensus 368 --~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~-- 443 (682)
T COG1770 368 --GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK-- 443 (682)
T ss_pred --CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--
Confidence 2345678899999999999999999999999988887765443 35566789999999899999999999876522
Q ss_pred CCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC-chh--HHHHHHH
Q 004475 508 KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRF--VEQLVSS 584 (751)
Q Consensus 508 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~-~~~--~~~~~~d 584 (751)
..++.||+++.+|....+ ....+......|+.|||+.....-+++.-.|...-. ... -.....|
T Consensus 444 ~~g~~p~lLygYGaYG~s-------------~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~D 510 (682)
T COG1770 444 LDGSAPLLLYGYGAYGIS-------------MDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTD 510 (682)
T ss_pred CCCCCcEEEEEecccccc-------------CCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHH
Confidence 245689999999964211 122222345577899998766344433222222100 000 1134789
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc----cCcccccccchhhH----
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP----FGFQTEFRTLWEAT---- 656 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~----~~~~~~~~~~~~~~---- 656 (751)
++++.++|.+++..++++|+++|.|+||+++..++...|+.|+++|+..|++|...+. .-+...+...|.++
T Consensus 511 FIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e 590 (682)
T COG1770 511 FIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPE 590 (682)
T ss_pred HHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHH
Confidence 9999999999999999999999999999999999999999999999999998833211 11112223334332
Q ss_pred --HHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC---cEEEEEeCCCCCcC
Q 004475 657 --NVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGA---LSRLVLLPFEHHVY 719 (751)
Q Consensus 657 --~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~H~~ 719 (751)
+.+..++|..++.... +|+|++.|..|+.|. +.+..+..++|++.+. ++-+.+--++||+.
T Consensus 591 ~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 591 YYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHHHHHHhhcccCCCcEEEEecccccCCC
Confidence 3456789998887754 789999999999999 8888889999987543 45556656889975
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=233.11 Aligned_cols=251 Identities=14% Similarity=0.075 Sum_probs=178.6
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
+.+.||++|.++ +..++||. .......|+|||||++ ++|++.+ .+..+||++++++|+.++|+..
T Consensus 163 ~~~~l~~~d~dG----~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~ 229 (428)
T PRK01029 163 KQGELWSVDYDG----QNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILAL 229 (428)
T ss_pred ccceEEEEcCCC----CCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecC
Confidence 356899999999 99999984 2334789999999998 5567643 4568999999999999999876
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
+.. ...++|||||++|+|.+..... .++|
T Consensus 230 ~g~-----~~~p~wSPDG~~Laf~s~~~g~----------------------------------------------~di~ 258 (428)
T PRK01029 230 QGN-----QLMPTFSPRKKLLAFISDRYGN----------------------------------------------PDLF 258 (428)
T ss_pred CCC-----ccceEECCCCCEEEEEECCCCC----------------------------------------------ccee
Confidence 653 3467999999999998642110 2344
Q ss_pred E--EcC-C---CCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCC
Q 004475 161 L--GSL-D---GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPA 230 (751)
Q Consensus 161 ~--~~~-~---G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~ 230 (751)
+ +++ . |+.++++.. .....++|||||++|+|.+.... ..+||+++++ ++..++++....
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~- 327 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYR- 327 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCC-
Confidence 4 344 2 466788765 34468999999999999875421 3468888875 344565644322
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg 309 (751)
....+.|||||++ |+|+...+ ...+|++++++ ++..+.++....... +.|||||
T Consensus 328 ------------~~~~p~wSPDG~~-Laf~~~~~---------g~~~I~v~dl~---~g~~~~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 328 ------------NSSCPAWSPDGKK-IAFCSVIK---------GVRQICVYDLA---TGRDYQLTTSPENKESPSWAIDS 382 (428)
T ss_pred ------------CccceeECCCCCE-EEEEEcCC---------CCcEEEEEECC---CCCeEEccCCCCCccceEECCCC
Confidence 1235699999999 77765321 23579999986 667777776655556 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 363 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG 363 (751)
+.|+|.+... ....||+++++++ +.+.++...... .. |+|||-.
T Consensus 383 ~~L~f~~~~~-g~~~L~~vdl~~g--~~~~Lt~~~g~~-~~------p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNS-NESELYLISLITK--KTRKIVIGSGEK-RF------PSWGAFP 426 (428)
T ss_pred CEEEEEECCC-CCceEEEEECCCC--CEEEeecCCCcc-cC------ceecCCC
Confidence 9999987543 3468999999884 556676543321 11 7899854
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=221.06 Aligned_cols=196 Identities=28% Similarity=0.440 Sum_probs=161.5
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCC---CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKL---PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~---~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.....|+++||+|+.+++++..|+|... .........++|+.+++++++++..+|++||+|+|+|+||++|+.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 4567888999999998888888877642 2233445679999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCccC---ccc----ccccchhhHHHHHhcCcccccCC--CCCCEEEEEcCCCCCCCCChHH
Q 004475 622 APHLFCCGIARSGSYNKTLTPFG---FQT----EFRTLWEATNVYIEMSPITHANK--IKKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~P~li~~G~~D~~vp~~~~~ 692 (751)
+|++|+++|+.+|++|....... +.. ....++...+.|...+++..+.+ +++|+|++||++|.+|| +.+
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~ 162 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQ 162 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHH
Confidence 99999999999999885543211 111 11333446677888888888888 89999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+.+++++|++.+++++++++|+++|.+...+...+...++.+||+++|+.
T Consensus 163 s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 163 SLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999887777789999999999999974
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=229.59 Aligned_cols=265 Identities=17% Similarity=0.177 Sum_probs=182.5
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcE--EEEeecCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSRRD 111 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~--l~~~~~~~~~~ 111 (751)
..|.++ +++|||+....+...+ ....+||++|.+|++.++||..... ...|+|||||+. ++|.+...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~-~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~~--- 208 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTE-LKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYKL--- 208 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccc-cccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEccC---
Confidence 346666 8999999874321111 2357999999999999999986653 357799999987 44564421
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i 189 (751)
...+||++++ +|+.++|+.. +....++|||||++|
T Consensus 209 -------------------------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 209 -------------------------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred -------------------------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 1158999999 5688888876 556689999999999
Q ss_pred EEEEecCCcccccccCCCceeEEE--EeCCC---ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
+|++.... ..++|+ +++++ ++.++++..... ....++|||||++ |+|++..+
T Consensus 246 af~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~~------------~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAFG------------TQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCC----------CcceeEEEeecccCCCCcceEeecCCCC------------CcCCeEECCCCCE-EEEEECCC
Confidence 99875421 224555 45543 345555543211 1125699999999 78865221
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
...+||+++++ ..++..+.++....... +.|||||++|+|..... +..+||+++++++ +.++++..
T Consensus 303 ---------g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g--~~~~Lt~~ 369 (428)
T PRK01029 303 ---------GRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATG--RDYQLTTS 369 (428)
T ss_pred ---------CCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCC--CeEEccCC
Confidence 22479998874 22344666766555556 99999999999987543 3468999999885 55677654
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
... ... +.|||||+.|+|.... .....|+++|+++++.++|+...
T Consensus 370 ~~~-~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 370 PEN-KES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred CCC-ccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCC
Confidence 221 111 7899999999998732 12357999999999888887543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=229.40 Aligned_cols=235 Identities=15% Similarity=0.122 Sum_probs=175.4
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
|..+||++|.++ +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..+.
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 567899999999 88888874 23357899999999999998642 345799999999999999986654
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
. ...++|||||+.|+|..... ...+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~~----------------------------------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcCC----------------------------------------------CCcEEEEE
Confidence 2 35689999999999984321 11479999
Q ss_pred cC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
|+ +|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~~---------- 332 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ---------- 332 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCCC----------
Confidence 99 6688899877 56678999999999999875421 34799999998877777432211
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
...+.|||||++ |+++...+ ....|++++++ ++..+.++.. .... +.|||||+.|+|.+...
T Consensus 333 ---~~~~~~SpDG~~-Ia~~~~~~---------g~~~I~~~dl~---~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 333 ---NQDADVSSDGKF-MVMVSSNG---------GQQHIAKQDLA---TGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ---ccCEEECCCCCE-EEEEEccC---------CCceEEEEECC---CCCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 225699999999 77765221 22478999986 5566666643 2334 99999999999988643
Q ss_pred ccceeEEEecCCCCCCcceeee
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
....|+++++++. ..+.+.
T Consensus 396 -~~~~l~~~~~~G~--~~~~l~ 414 (429)
T PRK03629 396 -MGSVLNLVSTDGR--FKARLP 414 (429)
T ss_pred -CceEEEEEECCCC--CeEECc
Confidence 3467999999874 445554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=230.75 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=174.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+||++|..+ +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..+..
T Consensus 181 ~~~l~~~d~dg----~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDG----ANVRYLTD--GSSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCCC----CCcEEEec--CCCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 56899999988 88888883 33358899999999999998742 3458999999999999999866542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQG----------------------------------------------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEecC----------------------------------------------CCceEEEEE
Confidence 45779999999999884321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++|+.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~~----------- 335 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGGR----------- 335 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCCc-----------
Confidence 9 6688899877 55568999999999999875421 35799999999888887654222
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
...+.|||||++ |++.... .....|++++++ ++..+.++.. .... +.|||||+.|+|.+....
T Consensus 336 --~~~~~~SpdG~~-ia~~~~~---------~~~~~i~~~d~~---~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 336 --YSTPVWSPRGDL-IAFTKQG---------GGQFSIGVMKPD---GSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred --ccCeEECCCCCE-EEEEEcC---------CCceEEEEEECC---CCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 224689999999 7776521 122478898875 4455555543 3456 999999999999885433
Q ss_pred cc--eeEEEecCCCCCCcceeee
Q 004475 321 SQ--TRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 321 ~~--~~l~~~~~~~~~~~~~~l~ 341 (751)
.. ..||+++++++ ..+.+.
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l~ 420 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREVP 420 (435)
T ss_pred CCCcceEEEEECCCC--ceEEcc
Confidence 21 58999999884 445554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=223.55 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=172.4
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
..+||+.|.++ ...+.++. .+ ....|+|||||++ ++|++.. .+..+||++++.+|+.++|+..+.
T Consensus 168 ~~~l~~~d~dg----~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYTL----TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCCC----CceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 46899999988 77777763 33 5779999999997 6666541 235799999999999999987554
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+.|||||+.|+|+.... ...+||++
T Consensus 234 -----~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~ 262 (419)
T PRK04043 234 -----MLVVSDVSKDGSKLLLTMAPK----------------------------------------------GQPDIYLY 262 (419)
T ss_pred -----cEEeeEECCCCCEEEEEEccC----------------------------------------------CCcEEEEE
Confidence 234679999999999985421 11589999
Q ss_pred cC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
++ +|+.++||.. .....+.|||||++|+|++.... ..+||++++++++.++++....
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~----------- 321 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK----------- 321 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC-----------
Confidence 99 6688999877 44567899999999999986532 3589999999988877754210
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
....|||||++ |+++........ .....+|++++++ ++..+.|+.. +... |+|||||+.|+|.+..
T Consensus 322 ----~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~~---~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 322 ----NNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLISTN---SDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred ----cCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEECC---CCCeEECCCC-CCcCCeEECCCCCEEEEEEcc-
Confidence 12489999999 777653321110 0023589999987 6677788775 3445 9999999999999865
Q ss_pred ccceeEEEecCCCC
Q 004475 320 TSQTRTWLVCPGSK 333 (751)
Q Consensus 320 ~~~~~l~~~~~~~~ 333 (751)
.....|+++++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 45568999999884
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=222.02 Aligned_cols=249 Identities=18% Similarity=0.198 Sum_probs=181.0
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
++|||+..... .....+||++|.++++.+++|.+.. .+..++|||||+.|+|.+...
T Consensus 164 ~riayv~~~~~----~~~~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~~-------------- 220 (429)
T PRK03629 164 TRIAYVVQTNG----GQFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFES-------------- 220 (429)
T ss_pred CeEEEEEeeCC----CCcceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEecC--------------
Confidence 68999986321 1346799999999999999987664 356889999999999985421
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 221 --------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 221 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 1158999999 6788888765 55568999999999999754321
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||++|+++++.++++..... ...+.|||||++ |+|++.. ....+||+
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~~-------------~~~~~wSPDG~~-I~f~s~~---------~g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAYTSDQ---------AGRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCCC-------------cCceEECCCCCE-EEEEeCC---------CCCceEEE
Confidence 34699999999888887654322 235699999999 7776522 12248999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||++|+|..... ...+||+++++++ ..+.|+... .. .. ++|
T Consensus 316 ~d~~---~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~ 381 (429)
T PRK03629 316 VNIN---GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLTDTF-LD-----ET--PSI 381 (429)
T ss_pred EECC---CCCeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCC--CeEEeCCCC-CC-----CC--ceE
Confidence 9986 556667765544555 89999999999987433 3468999999884 456666421 11 11 779
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
||||+.|+|.+.+ +....|++++++++..+++..
T Consensus 382 SpDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 382 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECcc
Confidence 9999999998843 223478899997666666644
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=222.84 Aligned_cols=253 Identities=16% Similarity=0.188 Sum_probs=183.1
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
..+|||++...+ ......+||++|.+++..+++|.... .+..++|||||++|+|.+....
T Consensus 165 ~~~iafv~~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g------------ 224 (435)
T PRK05137 165 DTRIVYVAESGP---KNKRIKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYANG------------ 224 (435)
T ss_pred CCeEEEEEeeCC---CCCcceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCCEEEEEEecCC------------
Confidence 458999986321 00225799999999999999987655 3678899999999999864311
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 225 ----------------------------------~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 225 ----------------------------------RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ----------------------------------CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 158999999 6787888766 56678999999999998765321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++|+++++.++|+...... ..+.|||||++ |+|.+..+ ...+||
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~~-------------~~~~~spDG~~-i~f~s~~~---------g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAID-------------TSPSYSPDGSQ-IVFESDRS---------GSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCcc-------------CceeEcCCCCE-EEEEECCC---------CCCeEE
Confidence 457999999999888887654332 24699999999 77865221 234899
Q ss_pred eccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 358 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (751)
+++++ ++..+.++...+.+. +.|||||+.|+|.... ....+|++++++++ ..+.++... . ... ++
T Consensus 318 ~~d~~---g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~--~~~~lt~~~-~-~~~------p~ 383 (435)
T PRK05137 318 VMNAD---GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGS--GERILTSGF-L-VEG------PT 383 (435)
T ss_pred EEECC---CCCeEEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCC--ceEeccCCC-C-CCC------Ce
Confidence 99986 667778877666667 9999999999998743 23468999998774 344554321 1 111 78
Q ss_pred eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 359 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 359 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
|||||+.|+|..... + ...+..|+++|++++..+++.
T Consensus 384 ~spDG~~i~~~~~~~------------~---~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTP------------G---SGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccC------------C---CCCcceEEEEECCCCceEEcc
Confidence 999999999988321 0 001257999999887766554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=214.90 Aligned_cols=247 Identities=15% Similarity=0.125 Sum_probs=179.3
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcE-EEEeecCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~~~~~~~~~ 121 (751)
.++||++... +....+||++|.++...++++... . ...+.|||||++ ++|.+...+
T Consensus 155 ~r~~~v~~~~-----~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~~------------ 211 (419)
T PRK04043 155 KRKVVFSKYT-----GPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGER------------ 211 (419)
T ss_pred eeEEEEEEcc-----CCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccCC------------
Confidence 4777776411 123589999999999899888764 2 357899999996 666644211
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++|+ +|+.++|+.. +....+.|||||++|+|+.....
T Consensus 212 ----------------------------------~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 212 ----------------------------------KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred ----------------------------------CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 158999999 7788999876 55667899999999999865421
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++++++++.++|+..+.... ...|||||++ |+|++.. ....+||
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~d~-------------~p~~SPDG~~-I~F~Sdr---------~g~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGIDV-------------NGNFVEDDKR-IVFVSDR---------LGYPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCccC-------------ccEECCCCCE-EEEEECC---------CCCceEE
Confidence 4689999999998888877664322 3389999999 8887622 2335899
Q ss_pred eccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecc-----cceeEEEecCCCCCCcceeeeecccccccCCCCC
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS 354 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 354 (751)
+++++ ++..++++.... ..+.|||||+.|+|...... ...+||+++++++ ..+.|+..... .
T Consensus 305 ~~dl~---~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~~------~- 371 (419)
T PRK04043 305 MKKLN---SGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGVN------Q- 371 (419)
T ss_pred EEECC---CCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCCc------C-
Confidence 99997 666666664321 12689999999999885431 2268999999884 56778764211 1
Q ss_pred CCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 355 PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 355 ~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
.++|||||+.|+|.... +....|+.+++++....++..
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeec
Confidence 17899999999998832 344579999998766666654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=222.02 Aligned_cols=234 Identities=16% Similarity=0.095 Sum_probs=171.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ ...+.++.. ...+..|+|||||++|||++.. .+..+||++++.+|+.++++..+..
T Consensus 197 ~~~l~i~d~dG----~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYDG----YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI 263 (448)
T ss_pred ceEEEEEeCCC----CCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC
Confidence 45788899888 777888743 3357899999999999998742 3457999999999999999866542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 264 -----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 292 (448)
T PRK04792 264 -----NGAPRFSPDGKKLALVLSKD----------------------------------------------GQPEIYVVD 292 (448)
T ss_pred -----cCCeeECCCCCEEEEEEeCC----------------------------------------------CCeEEEEEE
Confidence 24679999999999974321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....++|||||++|+|++.... ..+||++++++++.++++.....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~~----------- 351 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGEQ----------- 351 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCCC-----------
Confidence 9 6688889876 55678999999999999865421 35799999998887777522111
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....+|||||++ |++++.. ....+|++++++ ++..+.++... ... +.|||||+.|+|.+...
T Consensus 352 --~~~~~~SpDG~~-l~~~~~~---------~g~~~I~~~dl~---~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~- 414 (448)
T PRK04792 352 --NLGGSITPDGRS-MIMVNRT---------NGKFNIARQDLE---TGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ- 414 (448)
T ss_pred --CcCeeECCCCCE-EEEEEec---------CCceEEEEEECC---CCCeEEccCCC-CCCCceECCCCCEEEEEEecC-
Confidence 113599999999 7776522 123478999986 55566665432 234 89999999999988643
Q ss_pred cceeEEEecCCCCCCcceeee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~ 341 (751)
+...||+++.++. ..+.+.
T Consensus 415 g~~~l~~~~~~G~--~~~~l~ 433 (448)
T PRK04792 415 GKQVLAAVSIDGR--FKARLP 433 (448)
T ss_pred CceEEEEEECCCC--ceEECc
Confidence 4467999998773 344454
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=218.61 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=166.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+||++|.++ ...++++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 176 ~~L~~~D~dG----~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g-- 240 (427)
T PRK02889 176 YQLQISDADG----QNAQSALS--SPEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKG-- 240 (427)
T ss_pred cEEEEECCCC----CCceEecc--CCCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 4799999877 67777763 23357899999999999998742 345789999999999999875554
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....++|||||+.|+|..... ...+||.+++
T Consensus 241 ---~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 241 ---SNSAPAWSPDGRTLAVALSRD----------------------------------------------GNSQIYTVNA 271 (427)
T ss_pred ---CccceEECCCCCEEEEEEccC----------------------------------------------CCceEEEEEC
Confidence 235789999999999974321 1158999999
Q ss_pred -CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 -~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+++.++++.. .....+.|||||++|+|.+.... ..+||.++++++..++++.....
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~~------------ 329 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGSY------------ 329 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCCC------------
Confidence 5578888876 45567899999999999765321 34789999888777766532111
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
.....|||||++ |++++... ...+|++++++ ++..+.++... ... +.|||||+.|+|.++.. +
T Consensus 330 -~~~~~~SpDG~~-Ia~~s~~~---------g~~~I~v~d~~---~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 330 -NTSPRISPDGKL-LAYISRVG---------GAFKLYVQDLA---TGQVTALTDTT-RDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred -cCceEECCCCCE-EEEEEccC---------CcEEEEEEECC---CCCeEEccCCC-CccCceECCCCCEEEEEEecC-C
Confidence 124699999999 77765221 12379999986 45566666443 235 99999999999998654 3
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...|+.+++++.
T Consensus 394 ~~~l~~~~~~g~ 405 (427)
T PRK02889 394 RSVLAAVSSDGR 405 (427)
T ss_pred CEEEEEEECCCC
Confidence 468999999763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=218.54 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=172.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+|+++|.++ +..++|+. ....+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 183 ~~~l~i~D~~g----~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~ 249 (433)
T PRK04922 183 RYALQVADSDG----YNPQTILR--SAEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI 249 (433)
T ss_pred eEEEEEECCCC----CCceEeec--CCCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC
Confidence 34799999988 88888874 33358899999999999998642 3457999999999999999765542
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||+.|+|..... ...+||+++
T Consensus 250 -----~~~~~~SpDG~~l~~~~s~~----------------------------------------------g~~~Iy~~d 278 (433)
T PRK04922 250 -----NGAPSFSPDGRRLALTLSRD----------------------------------------------GNPEIYVMD 278 (433)
T ss_pred -----ccCceECCCCCEEEEEEeCC----------------------------------------------CCceEEEEE
Confidence 34679999999999874321 115899999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....++|||||++|+|.+.... ..+||++++++++.++++....
T Consensus 279 ~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~------------ 336 (433)
T PRK04922 279 LGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN------------ 336 (433)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC------------
Confidence 9 6688888876 44568999999999999875421 2479999998887777653211
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....++|||||++ |++.... ..+..|++++++ ++..+.++... ... +.|||||+.|+|.++. .
T Consensus 337 -~~~~~~~SpDG~~-Ia~~~~~---------~~~~~I~v~d~~---~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~ 400 (433)
T PRK04922 337 -YNARASVSPDGKK-IAMVHGS---------GGQYRIAVMDLS---TGSVRTLTPGS-LDESPSFAPNGSMVLYATRE-G 400 (433)
T ss_pred -CccCEEECCCCCE-EEEEECC---------CCceeEEEEECC---CCCeEECCCCC-CCCCceECCCCCEEEEEEec-C
Confidence 1225699999999 7776421 122479999986 55666666543 334 8999999999998865 3
Q ss_pred cceeEEEecCCCCCCcceeeee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
+...||+++++++ ..+.+..
T Consensus 401 g~~~L~~~~~~g~--~~~~l~~ 420 (433)
T PRK04922 401 GRGVLAAVSTDGR--VRQRLVS 420 (433)
T ss_pred CceEEEEEECCCC--ceEEccc
Confidence 4568999999873 4455543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=215.04 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=178.8
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
+.+|||+....+ ......+||++|.++++.++||.+.. .+..++|||||+.|+|.+....
T Consensus 167 ~~~ia~v~~~~~---~~~~~~~l~i~D~~g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~------------ 226 (433)
T PRK04922 167 WTRIAYVTVSGA---GGAMRYALQVADSDGYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFERG------------ 226 (433)
T ss_pred cceEEEEEEeCC---CCCceEEEEEECCCCCCceEeecCCC-----ccccccCCCCCCEEEEEecCCC------------
Confidence 457999976321 11335689999999888999987654 3567899999999999864311
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 227 ----------------------------------~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 227 ----------------------------------RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred ----------------------------------CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 158999999 6677778765 44557899999999998764321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++++++++.++++..... ...++|||||++ |++.+.. ....+||
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~-l~f~sd~---------~g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKS-IYFTSDR---------GGRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECC---------CCCceEE
Confidence 35799999999888877654322 125699999999 7776522 1224799
Q ss_pred eccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 358 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (751)
+++++ ++..+.++....... ++|||||+.|+|.... ....+|+++++.++ ..+.++..... .. +.
T Consensus 320 ~~dl~---~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g--~~~~Lt~~~~~--~~------p~ 385 (433)
T PRK04922 320 RVAAS---GGSAERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTG--SVRTLTPGSLD--ES------PS 385 (433)
T ss_pred EEECC---CCCeEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCC--CeEECCCCCCC--CC------ce
Confidence 99986 556666664443445 8999999999998642 33458999999874 45666643221 11 77
Q ss_pred eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 359 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 359 ~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
|||||+.|+|.+.. .....|+.++++++..+++..
T Consensus 386 ~spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 386 FAPNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEEccc
Confidence 99999999998832 234579999997766666643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=212.86 Aligned_cols=248 Identities=18% Similarity=0.155 Sum_probs=176.2
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+|||+.... ......+||+++.++.+.+++|.... .+..+.|||||++|+|.+...
T Consensus 183 ~riayv~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~-----~~~~p~wSPDG~~La~~s~~~-------------- 239 (448)
T PRK04792 183 TRIAYVVVND----KDKYPYQLMIADYDGYNEQMLLRSPE-----PLMSPAWSPDGRKLAYVSFEN-------------- 239 (448)
T ss_pred CEEEEEEeeC----CCCCceEEEEEeCCCCCceEeecCCC-----cccCceECCCCCEEEEEEecC--------------
Confidence 5888987532 11234699999999988999987765 256789999999999986431
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++|+ +|+.++++.. .....++|||||++|+|......
T Consensus 240 --------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g--- 284 (448)
T PRK04792 240 --------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG--- 284 (448)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---
Confidence 1158999999 6677788765 44457899999999999764421
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||++|+++++.++++..... ...++|||||++ |++.+.. ....+||+
T Consensus 285 -------~~~Iy~~dl~tg~~~~lt~~~~~-------------~~~p~wSpDG~~-I~f~s~~---------~g~~~Iy~ 334 (448)
T PRK04792 285 -------QPEIYVVDIATKALTRITRHRAI-------------DTEPSWHPDGKS-LIFTSER---------GGKPQIYR 334 (448)
T ss_pred -------CeEEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECC---------CCCceEEE
Confidence 45799999999888877654322 225699999999 7776522 12348999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||+.|+|.... ....+||+++++++ ..+.++..... .. ++|
T Consensus 335 ~dl~---~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g--~~~~lt~~~~d------~~--ps~ 400 (448)
T PRK04792 335 VNLA---SGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG--AMQVLTSTRLD------ES--PSV 400 (448)
T ss_pred EECC---CCCEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC--CeEEccCCCCC------CC--ceE
Confidence 9986 556666664333334 8999999999997753 34468999999884 44556543211 11 679
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
||||+.|+|.... .....|++++++++..+++.
T Consensus 401 spdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 401 APNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 9999999998832 12346888898655555553
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=212.52 Aligned_cols=244 Identities=17% Similarity=0.213 Sum_probs=173.3
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+|||+... .+..+||++|.++...++++.... .+..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~-------------- 217 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFES-------------- 217 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCC-----CcccceEcCCCCEEEEEEccC--------------
Confidence 579998631 345799999998888888876554 356789999999999986431
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...+||++|+ +|+.++++.. +....++|||||++|+++.....
T Consensus 218 --------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 218 --------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 1158999999 6777788755 55678999999999998754321
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
..+||+++++++..++++...... ..+.|||||++ |++++.. ....+||.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~wSpDG~~-l~f~s~~---------~g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGID-------------TEPFFSPDGRS-IYFTSDR---------GGAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCCC-------------cCeEEcCCCCE-EEEEecC---------CCCcEEEE
Confidence 357999999888777776543221 24599999999 7776521 12247999
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
++++ ++..+.++....... +.|||||++|+|.+... ...+|+++++.++ ..+.++..... . .++|
T Consensus 313 ~~~~---~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g--~~~~lt~~~~~--~------~p~~ 378 (427)
T PRK02889 313 MPAS---GGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATG--QVTALTDTTRD--E------SPSF 378 (427)
T ss_pred EECC---CCceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCC--CeEEccCCCCc--c------CceE
Confidence 9875 555666654333344 89999999999987532 3458999999884 45666543211 1 1789
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
||||+.|+|.... .....|+.+++++....++
T Consensus 379 spdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 379 APNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred CCCCCEEEEEEec------------------CCCEEEEEEECCCCceEEe
Confidence 9999999998843 1234788888864444444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=216.61 Aligned_cols=226 Identities=17% Similarity=0.157 Sum_probs=168.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|+++|.++ +..+.++. .+..+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~~g----~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~-- 244 (430)
T PRK00178 180 TLQRSDYDG----ARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL-- 244 (430)
T ss_pred EEEEECCCC----CCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC--
Confidence 588889888 88888863 33357899999999999998742 3457999999999999999865542
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
...++|||||++|+|..... ...+||++|+
T Consensus 245 ---~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~ 275 (430)
T PRK00178 245 ---NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLA 275 (430)
T ss_pred ---cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECC
Confidence 34689999999999975321 1158999999
Q ss_pred CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.... .
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------Y 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------C
Confidence 6688888876 45567899999999999865421 3479999998887777753211 1
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
.....|||||++ |+++...+ ....|++++++ ++..+.++... ... +.|||||+.|+|++... +.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~~---------~~~~l~~~dl~---tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQD---------GNFHVAAQDLQ---RGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ-GR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEccC---------CceEEEEEECC---CCCEEEccCCC-CCCCceECCCCCEEEEEEecC-Cc
Confidence 124589999999 77765221 12469999986 55666676543 334 89999999999988643 44
Q ss_pred eeEEEecCCCC
Q 004475 323 TRTWLVCPGSK 333 (751)
Q Consensus 323 ~~l~~~~~~~~ 333 (751)
..||+++.++.
T Consensus 398 ~~l~~~~~~g~ 408 (430)
T PRK00178 398 GVLMLVSINGR 408 (430)
T ss_pred eEEEEEECCCC
Confidence 68999999874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-22 Score=211.79 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=178.5
Q ss_pred CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCC
Q 004475 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (751)
Q Consensus 41 DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 120 (751)
-..+|||++.... ......+||++|.++++.++++.... .+..++|||||++|+|.+...
T Consensus 161 f~~~ia~v~~~~~---~~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERF---SVNTRYTLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCC---CCCcceEEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCC------------
Confidence 4568999875321 11234589999999988999876654 256789999999999986431
Q ss_pred CCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCc
Q 004475 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~ 198 (751)
...+||++++ +|+.++++.. +....++|||||++|+|......
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1158999999 6788888765 45567999999999999765421
Q ss_pred ccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccce
Q 004475 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (751)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l 278 (751)
..+||++|+++++.++++..... ...+.|||||++ |+|.+.. ....+|
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~---------~g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDR---------GGKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECC---------CCCceE
Confidence 35799999999888877654332 124699999999 7776522 122479
Q ss_pred eeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCe
Q 004475 279 YTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 357 (751)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 357 (751)
|+++++ ++..+.++....... +.|||||+.|+|..... +...|+++++.++ +.+.++..... .. +
T Consensus 314 y~~d~~---~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg--~~~~lt~~~~~------~~--p 379 (430)
T PRK00178 314 YKVNVN---GGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRG--SVRILTDTSLD------ES--P 379 (430)
T ss_pred EEEECC---CCCEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCC--CEEEccCCCCC------CC--c
Confidence 999986 555666654433344 89999999999987533 3457999999884 55666643211 11 6
Q ss_pred eeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 358 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 358 ~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
+|||||+.|+|.... ..+..|+.++++++..+++.
T Consensus 380 ~~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 380 SVAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 799999999998843 23457888999765554553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=190.08 Aligned_cols=364 Identities=15% Similarity=0.153 Sum_probs=229.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEE-eecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~-~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
++|.++|.+ |+.++||+ +..-+..|.+||||++|||.+ .. ..+....+||+++.++|+++++|.....
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~----~ss~~taDly~v~~e~Ge~kRiTyfGr~- 128 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVML----GSSLQTADLYVVPSEDGEAKRITYFGRR- 128 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEEe----cCCCccccEEEEeCCCCcEEEEEEeccc-
Confidence 688899988 99999983 433578999999999999954 32 2235668999999999999999987432
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCC-------------CCCCCCCCceeec-cccccccchhhhhccCCccchh-
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPK-------------KTMVPLGPKIQSN-EQKNIIISRMTDNLLKDEYDES- 149 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 149 (751)
......|+|||+.|+.+-.. ..++. ...+..||..... ..+.+...|.+.++..++...+
T Consensus 129 ---fT~VaG~~~dg~iiV~TD~~--tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 129 ---FTRVAGWIPDGEIIVSTDFH--TPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred ---cceeeccCCCCCEEEEeccC--CCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 23467899999988876322 11110 1123455554433 3445555666666555544321
Q ss_pred ----hh---------------------------------hhheeeEEEEEcCCC-CceecCCCceEEeeeeCCCCceEEE
Q 004475 150 ----LF---------------------------------DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 150 ----~~---------------------------------~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~~ 191 (751)
.| ++.+.++||.+|++| ..++.|+..++..-..+.|||+|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 11 222456899999988 7888888877777778999999999
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccC-CCC--CCCCCccCCccCCCceeeeecCCCceEEEEEec-----
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPA--EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ----- 263 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~----- 263 (751)
.. ..+||++|+++..++.|.-. |.. ...+...... ...-.++. -+|.. |++.+..
T Consensus 284 q~--------------~GdIylydP~td~lekldI~lpl~rk~k~~k~~~ps-kyledfa~-~~Gd~-ia~VSRGkaFi~ 346 (668)
T COG4946 284 QN--------------AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPS-KYLEDFAV-VNGDY-IALVSRGKAFIM 346 (668)
T ss_pred ec--------------CCcEEEeCCCcCcceeeecCCccccccccccccCHH-Hhhhhhcc-CCCcE-EEEEecCcEEEE
Confidence 74 34799999998877766433 322 1111110000 00000111 12333 3332211
Q ss_pred ---cCCC-------------------Ccc-ccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 264 ---DRGD-------------------ANV-EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 264 ---~~~~-------------------~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
++.. ..+ -......|-+++.+ ++..+.+...-+.+. +..||||+.++.+.
T Consensus 347 ~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~---~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--- 420 (668)
T COG4946 347 RPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD---GGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--- 420 (668)
T ss_pred CCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecC---CceEEEeeCCccceEEEEEcCCCcEEEEEc---
Confidence 0000 000 01111255566655 666777777777887 89999999887754
Q ss_pred ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEE
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 399 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 399 (751)
...+||+++++++ .+ ++.+.+....... +.|+|++++|++.... + -...+|.++
T Consensus 421 -dr~el~vididng--nv-~~idkS~~~lItd-----f~~~~nsr~iAYafP~----g-------------y~tq~Ikly 474 (668)
T COG4946 421 -DRFELWVIDIDNG--NV-RLIDKSEYGLITD-----FDWHPNSRWIAYAFPE----G-------------YYTQSIKLY 474 (668)
T ss_pred -CceEEEEEEecCC--Ce-eEecccccceeEE-----EEEcCCceeEEEecCc----c-------------eeeeeEEEE
Confidence 3468999999995 33 3333332221111 8899999999998832 1 124489999
Q ss_pred ecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec
Q 004475 400 DINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 400 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 446 (751)
|..+++...++..... ...++|.|||+.|+|-...
T Consensus 475 dm~~~Kiy~vTT~ta~------------DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 475 DMDGGKIYDVTTPTAY------------DFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred ecCCCeEEEecCCccc------------ccCcccCCCCcEEEEEecc
Confidence 9999988877665421 2236899999999987644
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=203.33 Aligned_cols=241 Identities=16% Similarity=0.104 Sum_probs=167.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ +..+.++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++.....
T Consensus 183 ~~~i~i~d~dg----~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDG----FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCC----CCceEecc--CCCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc
Confidence 46899999988 77777763 23358899999999999998741 3457899999999988888765442
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...++|||||++|++..... +..+||+++
T Consensus 250 -----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 278 (429)
T PRK01742 250 -----NGAPAFSPDGSRLAFASSKD----------------------------------------------GVLNIYVMG 278 (429)
T ss_pred -----cCceeECCCCCEEEEEEecC----------------------------------------------CcEEEEEEE
Confidence 24679999999999974311 114799999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +|+.++++.. .....+.|||||++|+|.+.... ..+||.++..++..+.+. ...
T Consensus 279 ~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~-~~~------------ 335 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVG-GRG------------ 335 (429)
T ss_pred CCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEec-CCC------------
Confidence 9 5688888876 55678999999999999865421 347888888777655541 110
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....|||||++ |++... ..++++++. ++..+.++.. .... +.|||||+.|+|++.. .
T Consensus 336 ---~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl~---~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g 393 (429)
T PRK01742 336 ---YSAQISADGKT-LVMING-------------DNVVKQDLT---SGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-G 393 (429)
T ss_pred ---CCccCCCCCCE-EEEEcC-------------CCEEEEECC---CCCeEEecCC-CCCCCceECCCCCEEEEEEcC-C
Confidence 13589999999 777531 357778875 4444455433 2335 8999999999998853 2
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCC
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST 362 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spD 362 (751)
....+++++.++. ..+.+..... .+.. ++|||-
T Consensus 394 ~~~~l~~~~~~G~--~~~~l~~~~g-~~~~------p~wsp~ 426 (429)
T PRK01742 394 LGKVLQLVSADGR--FKARLPGSDG-QVKF------PAWSPY 426 (429)
T ss_pred CceEEEEEECCCC--ceEEccCCCC-CCCC------cccCCC
Confidence 3345666777663 4455543222 1222 778874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=199.34 Aligned_cols=243 Identities=21% Similarity=0.179 Sum_probs=165.9
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (751)
+++|||++.+.. .....+||++|.++...++|+.+.. .+..++|||||++|+|.+....
T Consensus 168 ~~ria~v~~~~~----~~~~~~i~i~d~dg~~~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~------------ 226 (429)
T PRK01742 168 RTRIAYVVQKNG----GSQPYEVRVADYDGFNQFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENK------------ 226 (429)
T ss_pred CCEEEEEEEEcC----CCceEEEEEECCCCCCceEeccCCC-----ccccceEcCCCCEEEEEEecCC------------
Confidence 579999986321 1234899999999988888887654 3567899999999999864211
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcc
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
..+||++|+ +|+.++++.. +....++|||||++|++......
T Consensus 227 ----------------------------------~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 227 ----------------------------------KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ----------------------------------CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 158999999 6676677654 44557999999999999764321
Q ss_pred cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+||++|++++..++++..... ...+.|||||++ |++++.. ....+||
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-i~f~s~~---------~g~~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAGN-------------NTEPSWSPDGQS-ILFTSDR---------SGSPQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCCC-------------cCCEEECCCCCE-EEEEECC---------CCCceEE
Confidence 34699999998888877654332 235699999999 7776522 1224788
Q ss_pred eccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 280 TQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
.++.+ ++..+.+. ... ..+.|||||+.|++... ..++.+|+.++ ..+.++.. .. ... ++|
T Consensus 320 ~~~~~---~~~~~~l~-~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~-~~-~~~------~~~ 379 (429)
T PRK01742 320 RMSAS---GGGASLVG-GRG-YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSST-FL-DES------PSI 379 (429)
T ss_pred EEECC---CCCeEEec-CCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCC-CC-CCC------ceE
Confidence 88875 44444442 222 22789999999998763 35778888774 33444432 11 111 779
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
||||+.|++.+.+ +....+++++.+++..++|.
T Consensus 380 sPdG~~i~~~s~~------------------g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 380 SPNGIMIIYSSTQ------------------GLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCceEEcc
Confidence 9999999998832 22234566677655555553
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=180.87 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=217.5
Q ss_pred eccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCc
Q 004475 433 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPL 512 (751)
Q Consensus 433 ~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~ 512 (751)
-+.+|..+.+...+...|+.+|+.++.+++.+.+...+.. .+.+.+.+|+....+.||.+|+.++.. ++.... +.
T Consensus 347 ~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~ 421 (648)
T COG1505 347 ADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-FDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---EN 421 (648)
T ss_pred CCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-cCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CC
Confidence 3557888999999999999999999999988887765432 344568899999999999999999998 554332 47
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
|++|+.+||-..+ -.| .+......++++|.+.+..+-++...+|...... .-.....+|+.+++
T Consensus 422 pTll~aYGGF~vs--------ltP-----~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 422 PTLLYAYGGFNIS--------LTP-----RFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred ceEEEeccccccc--------cCC-----ccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 9999999974222 111 1112237788898887775555554454432111 11234579999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----cCcccccccch--hhHHHHHhc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----FGFQTEFRTLW--EATNVYIEM 662 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----~~~~~~~~~~~--~~~~~~~~~ 662 (751)
+.|.+++...|+++++.|.|.||.++..++.+.|+.|.|+|+..|+.|+.... +.+..+++.+- +....+.++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~Y 568 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAY 568 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhc
Confidence 99999998899999999999999999999999999999999999998854321 12233333332 234567889
Q ss_pred CcccccCC-CC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH-HHHHHHHHHHHHHH
Q 004475 663 SPITHANK-IK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV-MHVIWETDRWLQKY 739 (751)
Q Consensus 663 ~~~~~~~~-~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~fl~~~ 739 (751)
||+++++. .+ +|+||..+.+|.+|. +.|++.|+.+|++.+.++-+.+-.++||.-...... ......+..||.+.
T Consensus 569 SPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~ 646 (648)
T COG1505 569 SPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRT 646 (648)
T ss_pred CchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHh
Confidence 99998876 33 899999999999998 999999999999999999999999999987533322 34555678888877
Q ss_pred h
Q 004475 740 C 740 (751)
Q Consensus 740 l 740 (751)
|
T Consensus 647 L 647 (648)
T COG1505 647 L 647 (648)
T ss_pred h
Confidence 6
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=176.96 Aligned_cols=291 Identities=20% Similarity=0.207 Sum_probs=204.1
Q ss_pred cCCCEEEEEEecCCCCCeEEEEEcCCCcee--EeecCCCCCCCc--cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCC
Q 004475 435 LNQLKILTSKESKTEITQYHILSWPLKKSS--QITNFPHPYPTL--ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 510 (751)
Q Consensus 435 ~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~--~lt~~~~~~~~~--~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~ 510 (751)
.+++.+.|...++..|+.||.+|+..++.+ .+.+.....+.+ ..+.++++.+++.||..|+..++.-.... ..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k--~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIK--LDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhh--hcC
Confidence 457889999999999999999999988432 233333323333 34589999999999999999999843322 234
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchh---HHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~ 587 (751)
..|++|+.||+...+.+. .|. .....|..+|++....+-+++.++|........ -.....|++.
T Consensus 469 ~~P~LLygYGay~isl~p---------~f~----~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDP---------SFR----ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeecc---------ccc----cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 589999999974332221 111 123355679999988777777777766433222 2356899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc----Ccccccccchhh---HHHHH
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF----GFQTEFRTLWEA---TNVYI 660 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~----~~~~~~~~~~~~---~~~~~ 660 (751)
+++||.++++..+++..+.|.|.||.++..++.++|+.|.|+|+..|++|...... -........|.. .+.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988443210 011111122222 23444
Q ss_pred hcCcccccCCCC-----CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-------CcEEEEEeCCCCCcCCcccc-HHH
Q 004475 661 EMSPITHANKIK-----KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-------ALSRLVLLPFEHHVYAAREN-VMH 727 (751)
Q Consensus 661 ~~~~~~~~~~~~-----~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~H~~~~~~~-~~~ 727 (751)
.++++...++++ +.||+..+.+|.+|+ +.++..+.++|+.+- .++-+.+.+++||+.-.... .-+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 555554444442 568999999999998 899999998887532 35788999999998743221 223
Q ss_pred HHHHHHHHHHHHhcC
Q 004475 728 VIWETDRWLQKYCLS 742 (751)
Q Consensus 728 ~~~~~~~fl~~~l~~ 742 (751)
......+||.+.+..
T Consensus 694 E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLNS 708 (712)
T ss_pred HHHHHHHHHHHHhcC
Confidence 344567888777653
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=174.73 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=169.9
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+......+.+.+|..+....|+|..- ..+..+|+++||.|. .....+...+..|+..||.|+
T Consensus 25 ~~~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~--------------~~s~~~~~~a~~l~~~g~~v~ 86 (313)
T KOG1455|consen 25 VTYSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE--------------HSSWRYQSTAKRLAKSGFAVY 86 (313)
T ss_pred cceeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc--------------cchhhHHHHHHHHHhCCCeEE
Confidence 34555667778899999999999652 235789999999741 111122346789999999999
Q ss_pred EcCCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+ .++.|+|.+.+-.. .....++|+...++.++.+..-.....+++||||||.+++.++.++|+.+.++|+.+|.
T Consensus 87 a---~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPm 163 (313)
T KOG1455|consen 87 A---IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPM 163 (313)
T ss_pred E---eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecc
Confidence 9 67778888765433 35677899999999888776545568999999999999999999999999999999986
Q ss_pred CCCCCC-------------------ccC-cccc------cccchhhH-------------------HHHH-hcCcccccC
Q 004475 636 YNKTLT-------------------PFG-FQTE------FRTLWEAT-------------------NVYI-EMSPITHAN 669 (751)
Q Consensus 636 ~d~~~~-------------------~~~-~~~~------~~~~~~~~-------------------~~~~-~~~~~~~~~ 669 (751)
...... .|. .+.. ...++... +.++ ......++.
T Consensus 164 c~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 164 CKISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 431100 010 0000 01111100 0000 001234577
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc---cccHHHHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA---RENVMHVIWETDRWLQKY 739 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~fl~~~ 739 (751)
++..|+|++||+.|.+.. +..++++|+..... +.++.+|||.-|.... .++.+.++..|++||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 899999999999999988 99999999988765 5579999999999863 456778999999999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=188.26 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=166.1
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
+..+..+...+...+|..+.+..+.|.+. ..+.|+||++||.+. . ..+ ........|+++||
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~-----------~-~~~--~~~~~~~~L~~~Gy 88 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGN-----------D-ISW--TFQSTAIFLAQMGF 88 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCC-----------C-cce--ehhHHHHHHHhCCC
Confidence 33455666677778999999999988642 124689999999531 0 011 11123456788999
Q ss_pred EEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 556 AVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
.|++ ++.+|+|.+.... .......+|+..+++++......+..+++|+||||||.+|+.++.++|++++++|+.
T Consensus 89 ~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 165 (330)
T PLN02298 89 ACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLV 165 (330)
T ss_pred EEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEe
Confidence 9999 6677888764322 235677899999999998764445568999999999999999999999999999999
Q ss_pred cCCCCCCCC---ccC-----------ccc----ccccch------hhHHHHHhcC----------------------ccc
Q 004475 633 SGSYNKTLT---PFG-----------FQT----EFRTLW------EATNVYIEMS----------------------PIT 666 (751)
Q Consensus 633 ~~~~d~~~~---~~~-----------~~~----~~~~~~------~~~~~~~~~~----------------------~~~ 666 (751)
+|....... .+. .+. ...... .....+...+ ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (330)
T PLN02298 166 APMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGK 245 (330)
T ss_pred cccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHH
Confidence 886432110 000 000 000000 0000000000 112
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc---cHHHHHHHHHHHHHHHhcCC
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~fl~~~l~~~ 743 (751)
.+.++++|+|++||++|.++| +..++.+++.+... ..+++++++++|.....+ ..+.+.+.+.+||.+++...
T Consensus 246 ~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~ 321 (330)
T PLN02298 246 KLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGK 321 (330)
T ss_pred hhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 356788999999999999999 89999998887643 458999999999976322 13567888999999998654
Q ss_pred CC
Q 004475 744 TS 745 (751)
Q Consensus 744 ~~ 745 (751)
.+
T Consensus 322 ~~ 323 (330)
T PLN02298 322 AT 323 (330)
T ss_pred CC
Confidence 43
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=181.06 Aligned_cols=220 Identities=19% Similarity=0.249 Sum_probs=144.2
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
.+..+.+.|.+. .+++.|+||++||.+. ... .....+..|+++||+|+++++ +|+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~-----------~~~----~~~~~~~~l~~~G~~v~~~d~---~g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTS-----------SKL----VYSYFAVALAQAGFRVIMPDA---PMHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCc-----------ccc----hHHHHHHHHHhCCCEEEEecC---CcccccC
Confidence 356677778641 1235799999999641 101 122456788899999999544 4555431
Q ss_pred CCc------h---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc-CCCCCC---
Q 004475 573 PND------R---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS-GSYNKT--- 639 (751)
Q Consensus 573 ~~~------~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-~~~d~~--- 639 (751)
... . ......+|+..++++++++..+|+++|+++|||+||.+|+.++.++|+...+++... +.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLART 149 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHH
Confidence 110 1 112346778888999988877899999999999999999999999876433333322 211100
Q ss_pred CCccCccccc---ccchhhHHHHHhcCcccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC--cEEEEEeC
Q 004475 640 LTPFGFQTEF---RTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA--LSRLVLLP 713 (751)
Q Consensus 640 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~--~~~~~~~~ 713 (751)
..+....... .........+...++...+.++ ++|+|++||++|..+| +.++++++++++.++. ++++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~ 227 (249)
T PRK10566 150 LFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWEP 227 (249)
T ss_pred hcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEecC
Confidence 0000000000 0000111122333444455666 6999999999999999 9999999999998876 47899999
Q ss_pred CCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 714 FEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 714 ~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+++|.+. ...+..+++||++++
T Consensus 228 ~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 228 GVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCccC-----HHHHHHHHHHHHhhC
Confidence 9999874 257889999999764
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-20 Score=177.29 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=142.5
Q ss_pred EEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCC
Q 004475 483 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 562 (751)
Q Consensus 483 ~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~ 562 (751)
...+...+|..+.||+..|.+.. ..+.++||++||-+ +. . ..+..++.+|+++||+|+.
T Consensus 11 ~~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~-----------~~-~---~~~~~~A~~La~~G~~vLr--- 69 (307)
T PRK13604 11 DHVICLENGQSIRVWETLPKENS---PKKNNTILIASGFA-----------RR-M---DHFAGLAEYLSSNGFHVIR--- 69 (307)
T ss_pred hheEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCC-----------CC-h---HHHHHHHHHHHHCCCEEEE---
Confidence 34456678999999999997522 23478999999953 11 1 1134667789999999999
Q ss_pred CCCCCC-CCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC
Q 004475 563 IPIIGE-GDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639 (751)
Q Consensus 563 ~~~~g~-g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~ 639 (751)
+|.+|. |.+.+.. ........|+..+++|++++. ..+|+|+||||||.+|+.+|... .++++|+.+|+.+..
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 554444 4443211 112334799999999998863 46899999999999997666644 389999999987722
Q ss_pred C------C------ccC-ccccc----ccch--hhHHH------HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHH
Q 004475 640 L------T------PFG-FQTEF----RTLW--EATNV------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAE 694 (751)
Q Consensus 640 ~------~------~~~-~~~~~----~~~~--~~~~~------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~ 694 (751)
. . ++. .+... .... ...+. ....+++..+.+++.|+|++||+.|..|| +.+++
T Consensus 145 d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~ 222 (307)
T PRK13604 145 DTLERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVI 222 (307)
T ss_pred HHHHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHH
Confidence 0 0 000 00000 0000 00011 11234456677889999999999999999 99999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+++++++. .+++++++||+.|.+.
T Consensus 223 ~l~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 223 DLLDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHHHhcc--CCcEEEEeCCCccccC
Confidence 99998754 3678999999999985
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=190.06 Aligned_cols=230 Identities=19% Similarity=0.163 Sum_probs=154.3
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
....+.+.++..++..+.+++++|.. .+++|+||++||.+ + ............|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~--~~~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------S--LQTDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------c--chhhhHHHHHHHHHhCCCEE
Confidence 35688999998787789999999973 23589988776632 0 00011113455788999999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
++ ++.+|+|.+.... ...+.......+++++.+.+.+|.+||+++|||+||++|+.+|..+|++++++|+.+|.++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556776653321 1112223335788999999889999999999999999999999999899999999998765
Q ss_pred CCCCccCcccc------------cccchhhHH----HHHhcCcc--cc-cCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 638 KTLTPFGFQTE------------FRTLWEATN----VYIEMSPI--TH-ANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 638 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~--~~-~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
........... ........+ .+...+.. .. ..++++|+|++||++|.++| +..++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11111110 01 24688999999999999999 888876654
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.. ...+++++|++ |. .+....++..+.+||.++|
T Consensus 380 ~~----~~~~l~~i~~~-~~---~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SS----ADGKLLEIPFK-PV---YRNFDKALQEISDWLEDRL 413 (414)
T ss_pred hC----CCCeEEEccCC-Cc---cCCHHHHHHHHHHHHHHHh
Confidence 44 34578999986 33 3457789999999999876
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=186.90 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=159.5
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+..++..+.+.+|.++.+..+.|.+ ..+.|+||++||.+. ....+.......|+++||.|+
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~--------------~~~~~~~~~~~~l~~~g~~v~ 119 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGD--------------TCTFFFEGIARKIASSGYGVF 119 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCC--------------ccchHHHHHHHHHHhCCCEEE
Confidence 3344445556788999999999864 224689999999631 001111134557778899999
Q ss_pred EcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+ ++.+|+|.+.... ......++|+.+.++.+......+..+++|+||||||.+|+.++.++|++++++|+++|.
T Consensus 120 ~---~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~ 196 (349)
T PLN02385 120 A---MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPM 196 (349)
T ss_pred E---ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccc
Confidence 9 6667888765432 234677888888888887654445568999999999999999999999999999999885
Q ss_pred CCCCCC--c-c-----------------Cccccc--ccchhhH-----------------------HHHHh-cCcccccC
Q 004475 636 YNKTLT--P-F-----------------GFQTEF--RTLWEAT-----------------------NVYIE-MSPITHAN 669 (751)
Q Consensus 636 ~d~~~~--~-~-----------------~~~~~~--~~~~~~~-----------------------~~~~~-~~~~~~~~ 669 (751)
...... . . ...... ...+... +.+.. ......+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 276 (349)
T PLN02385 197 CKIADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLE 276 (349)
T ss_pred ccccccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcc
Confidence 431100 0 0 000000 0000000 00000 01122456
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc---HHHHHHHHHHHHHHHhc
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN---VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l~ 741 (751)
++++|+|++||++|.++| +..++.+++.+... ..+++++|+++|.....+. ...++..+++||++++.
T Consensus 277 ~i~~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 277 EVSLPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred cCCCCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 789999999999999998 88888888777532 4589999999999763322 34588899999998864
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=182.80 Aligned_cols=297 Identities=19% Similarity=0.232 Sum_probs=192.5
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
++...+|++|+.+ ++.++|+.. ......|.|||||++|||+.. .+||+.++.+++.++||..+
T Consensus 20 s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 20 SFKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--
T ss_pred ccceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEecccc
Confidence 5678999999999 999999732 346899999999999999853 79999999999999999876
Q ss_pred Ccc-ccc------------eeeeeEEecCCcEEEEeecCCCCCCCCC-C--CCC--CCCceeeccccccccchhhhhccC
Q 004475 82 DIC-LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKK-T--MVP--LGPKIQSNEQKNIIISRMTDNLLK 143 (751)
Q Consensus 82 ~~~-~~~------------~~~~~~wspDg~~l~~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (751)
... .++ ....+.|||||++|+|...+.+....-. . ..+ ..|......-++.+.
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~--------- 153 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD--------- 153 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---------
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC---------
Confidence 321 111 1236789999999999977655432000 0 000 011111111111100
Q ss_pred CccchhhhhhheeeEEEEEcC-CCCceecC------CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 144 DEYDESLFDYYTTAQLVLGSL-DGTAKDFG------TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt------~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
. .....|+++++ +|+...+. .. ..+..+.|++|++.|++....+... ...+.++|
T Consensus 154 ----~-----np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d 216 (353)
T PF00930_consen 154 ----P-----NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCD 216 (353)
T ss_dssp ------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEE
T ss_pred ----c-----CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEE
Confidence 0 03368999999 55543332 12 5667999999999888877765422 35688899
Q ss_pred CCCceeeeeccCCCCCCCCCccCCccCCCceeeee-cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe
Q 004475 216 TDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (751)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 294 (751)
..++..+.+.... ...++.. ...+.|. +++.. +++++..+ .-.+||+++.+ ++..+.|
T Consensus 217 ~~tg~~~~~~~e~----~~~Wv~~----~~~~~~~~~~~~~-~l~~s~~~---------G~~hly~~~~~---~~~~~~l 275 (353)
T PF00930_consen 217 ASTGETRVVLEET----SDGWVDV----YDPPHFLGPDGNE-FLWISERD---------GYRHLYLYDLD---GGKPRQL 275 (353)
T ss_dssp ECTTTCEEEEEEE----SSSSSSS----SSEEEE-TTTSSE-EEEEEETT---------SSEEEEEEETT---SSEEEES
T ss_pred CCCCceeEEEEec----CCcceee----ecccccccCCCCE-EEEEEEcC---------CCcEEEEEccc---ccceecc
Confidence 9876655443211 1111111 1245665 99998 66655332 23589999997 6678899
Q ss_pred EeeceeEE--EEEecCCceEEEeeeec-ccceeEEEecCC-CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 295 HKLDLRFS--VSWCDDSLALVNETWYK-TSQTRTWLVCPG-SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 295 ~~~~~~~~--~~~spdg~~l~~~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++..+. ..|+++++.|+|.++.. ....+||.++++ + +.++.|+...... .. +++||||++++...
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--~~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--GEPKCLTCEDGDH-YS------ASFSPDGKYYVDTY 346 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--TEEEESSTTSSTT-EE------EEE-TTSSEEEEEE
T ss_pred ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--CCeEeccCCCCCc-eE------EEECCCCCEEEEEE
Confidence 99988885 89999999999998653 467899999999 6 5778888655433 11 78999999998877
Q ss_pred e
Q 004475 371 K 371 (751)
Q Consensus 371 ~ 371 (751)
.
T Consensus 347 s 347 (353)
T PF00930_consen 347 S 347 (353)
T ss_dssp E
T ss_pred c
Confidence 3
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=178.01 Aligned_cols=201 Identities=23% Similarity=0.257 Sum_probs=140.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC-CCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG-EGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g-~g~~~ 572 (751)
+.+++..|++ .++.|.||++|+-. ++.......+..|+++||.|+++|.+...+ .....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 5789999987 24689999999841 121222245778999999999988765554 11110
Q ss_pred CC-chh--------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004475 573 PN-DRF--------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 573 ~~-~~~--------~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 643 (751)
.. ... .+...+|+..++++|++++.++..||+++|+|+||.+|+.++... ..++++|++.|... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~----~- 134 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP----P- 134 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS----G-
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC----C-
Confidence 00 001 234568888999999999878889999999999999999999887 67999999998100 0
Q ss_pred CcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 644 GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
..+.....++++|+|+++|+.|+.+| .+...++.+.|++++.++++++||+++|+|....
T Consensus 135 ------------------~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 135 ------------------PPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ------------------GGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ------------------CcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 01112345678999999999999998 8889999999999999999999999999997643
Q ss_pred c-------HHHHHHHHHHHHHHHh
Q 004475 724 N-------VMHVIWETDRWLQKYC 740 (751)
Q Consensus 724 ~-------~~~~~~~~~~fl~~~l 740 (751)
. ..+.++++++||+++|
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 2 3567888999998875
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=182.21 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=197.0
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 118 (751)
||||++++|..+..+.-+. +....+|++++++++.++|+.... ....+.|||||+.|+|...
T Consensus 1 S~d~~~~l~~~~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH-SFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS-EEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEeeee-ccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999998764333332 566899999999999999976522 3568899999999999933
Q ss_pred CCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCCc-------------------eEE
Q 004475 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~~-------------------~~~ 178 (751)
.+||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 58999998 67888887642 123
Q ss_pred eeeeCCCCceEEEEEecCCcc--------------ccc----c---cCC--CceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 179 AVEPSPDQKYVLITSMHRPYS--------------YKV----P---CAR--FSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~--------------~~~----~---~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.+.|||||++|+|.+.+.... +.. + -+. -.-+|+++++++++...+... .
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~-------~ 177 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP-------N 177 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE----------H
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec-------c
Confidence 567999999999998765210 000 0 011 114688888887765433211 0
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-ee-ceeE---E-EEEe-cC
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL-DLRF---S-VSWC-DD 308 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~-~~~~---~-~~~s-pd 308 (751)
.+......+..+.|++|+++ +++.... +...+..|++++.. .+..+.+. .. .+-+ . +.+. ++
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~-l~~~~~n-------R~q~~~~l~~~d~~---tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKR-LWVQWLN-------RDQNRLDLVLCDAS---TGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEE-EEEEEEE-------TTSTEEEEEEEEEC---TTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred ccCCCccCcccceecCCCcE-EEEEEcc-------cCCCEEEEEEEECC---CCceeEEEEecCCcceeeecccccccCC
Confidence 11122344668999999996 4443211 12223466777764 33333333 22 1111 1 4555 89
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..+++.+. .++..+||.++.+++ ..++|+.+...-... +.|+++++.|+|.+..
T Consensus 247 ~~~~l~~s~-~~G~~hly~~~~~~~--~~~~lT~G~~~V~~i------~~~d~~~~~iyf~a~~---------------- 301 (353)
T PF00930_consen 247 GNEFLWISE-RDGYRHLYLYDLDGG--KPRQLTSGDWEVTSI------LGWDEDNNRIYFTANG---------------- 301 (353)
T ss_dssp SSEEEEEEE-TTSSEEEEEEETTSS--EEEESS-SSS-EEEE------EEEECTSSEEEEEESS----------------
T ss_pred CCEEEEEEE-cCCCcEEEEEccccc--ceeccccCceeeccc------ceEcCCCCEEEEEecC----------------
Confidence 999988887 556789999999994 567888765442111 6799999999999932
Q ss_pred CCCCCceeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCC
Q 004475 389 PEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 451 (751)
Q Consensus 389 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 451 (751)
....+.+||+++++ +++.++|+..... + ..++|||||+.++.+.+++..|+
T Consensus 302 ~~p~~r~lY~v~~~~~~~~~~LT~~~~~----~--------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 302 DNPGERHLYRVSLDSGGEPKCLTCEDGD----H--------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp GGTTSBEEEEEETTETTEEEESSTTSST----T--------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred CCCCceEEEEEEeCCCCCeEeccCCCCC----c--------eEEEECCCCCEEEEEEcCCCCCC
Confidence 12467899999999 8999998776542 1 23689999999999999888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-19 Score=188.48 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=164.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|.++ +..++++.. ...+..|+|||||++|||+... .+..+||++++++|+.++++....
T Consensus 169 ~~~l~~~d~~g----~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~- 234 (417)
T TIGR02800 169 RYELQVADYDG----ANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPG- 234 (417)
T ss_pred cceEEEEcCCC----CCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCC-
Confidence 34699999988 888888742 2247899999999999998642 344789999999998888865443
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
....++|||||+.|+|..... ...+||+++
T Consensus 235 ----~~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d 264 (417)
T TIGR02800 235 ----MNGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMD 264 (417)
T ss_pred ----CccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEE
Confidence 234679999999999874321 114799999
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +++.++++.. .....+.|+|||++|++.+.... ..+||++++++++.++++....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~~------------ 322 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRGG------------ 322 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC------------
Confidence 9 5677888766 44457899999999999865421 2479999998887766643221
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
....+.|||||++ |+++... ..+.+|++++++ ++..+.++.. .... +.|||||+.|+|.+...
T Consensus 323 -~~~~~~~spdg~~-i~~~~~~---------~~~~~i~~~d~~---~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 323 -YNASPSWSPDGDL-IAFVHRE---------GGGFNIAVMDLD---GGGERVLTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred -CccCeEECCCCCE-EEEEEcc---------CCceEEEEEeCC---CCCeEEccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 1235699999998 7776521 123589999986 4445555443 2335 89999999999988653
Q ss_pred cceeEEEecCCCC
Q 004475 321 SQTRTWLVCPGSK 333 (751)
Q Consensus 321 ~~~~l~~~~~~~~ 333 (751)
....+++.+.++.
T Consensus 387 ~~~~l~~~~~~g~ 399 (417)
T TIGR02800 387 GRGVLGLVSTDGR 399 (417)
T ss_pred CcEEEEEEECCCc
Confidence 3367888887763
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=175.10 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=148.3
Q ss_pred EEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCCeEEEE
Q 004475 482 EMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLA 559 (751)
Q Consensus 482 e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~~ 559 (751)
+..++.+. .+.++.+.+|+|++... +++|+|+++||.+. +...+.. ......+ .+.||.|++
T Consensus 14 ~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~P~vvllHG~~~-----------~~~~~~~--~~~~~~la~~~g~~Vv~ 77 (275)
T TIGR02821 14 GFYRHKSETCGVPMTFGVFLPPQAAA---GPVPVLWYLSGLTC-----------THENFMI--KAGAQRFAAEHGLALVA 77 (275)
T ss_pred EEEEEeccccCCceEEEEEcCCCccC---CCCCEEEEccCCCC-----------CccHHHh--hhHHHHHHhhcCcEEEE
Confidence 34444442 45678899999986432 24899999999641 1111110 0112334 457999999
Q ss_pred cCCCCCCCCCCCCC--------Cch-h----------HHHHHHHHHH-HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 004475 560 GPSIPIIGEGDKLP--------NDR-F----------VEQLVSSAEA-AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 560 ~~~~~~~g~g~~~~--------~~~-~----------~~~~~~d~~~-~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
++.. .+|.+.+.. ... + .......+.+ +...+.+...+|.++++++||||||++|+.++
T Consensus 78 Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a 156 (275)
T TIGR02821 78 PDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIA 156 (275)
T ss_pred eCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHH
Confidence 6652 223221100 000 0 0011222222 22333343457889999999999999999999
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccC--CCCCCEEEEEcCCCCCCCCCh-HHHHHH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN--KIKKPILIIHGEVDDKVGLFP-MQAERF 696 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~li~~G~~D~~vp~~~-~~~~~~ 696 (751)
.++|+.++++++++|+++.....+.............+.+...++...+. +..+|+++.||+.|+++| . .+...+
T Consensus 157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~~ 234 (275)
T TIGR02821 157 LKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDAF 234 (275)
T ss_pred HhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHHH
Confidence 99999999999999987754322110000000001111222333333332 246899999999999998 7 577899
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.++|++++.++++.++|+++|.+.. +...+...++|+.+++
T Consensus 235 ~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 235 EQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999999999999999764 5577888888887763
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=184.37 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=163.6
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 118 (751)
.+.+.+++|++... ..+..+||+++.++++.++|+.... .+..++|||||++|+|......
T Consensus 152 ~~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~--------- 212 (417)
T TIGR02800 152 GAFSTRIAYVSKSG-----KSRRYELQVADYDGANPQTITRSRE-----PILSPAWSPDGQKLAYVSFESG--------- 212 (417)
T ss_pred CCcCCEEEEEEEeC-----CCCcceEEEEcCCCCCCEEeecCCC-----ceecccCCCCCCEEEEEEcCCC---------
Confidence 34578899987532 1456899999999888999986554 2567799999999999854311
Q ss_pred CCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecC
Q 004475 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..+|+++++ +|+.+.++.. .....++|||||+.|+|.....
T Consensus 213 -------------------------------------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 213 -------------------------------------KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred -------------------------------------CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 147999999 6666666655 4556789999999999875432
Q ss_pred CcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccc
Q 004475 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (751)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~ 276 (751)
. ..+||+++++++..++++..... .....|+|||++ |++.+.. ....
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~~---------~g~~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSDR---------GGSP 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEECC---------CCCc
Confidence 1 35799999998877777544322 124589999999 7776521 1224
Q ss_pred ceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCC
Q 004475 277 IIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 355 (751)
Q Consensus 277 ~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 355 (751)
+||+++++ ++..+.++....... +.|||||+.|+|..... ...+|+++++.++ ..+.++.... . .
T Consensus 303 ~iy~~d~~---~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~-~-----~-- 368 (417)
T TIGR02800 303 QIYMMDAD---GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL-D-----E-- 368 (417)
T ss_pred eEEEEECC---CCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC-C-----C--
Confidence 79999986 555666665544455 99999999999987533 3468999999874 4444543211 1 1
Q ss_pred CeeeCCCCCEEEEeeee
Q 004475 356 MMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 356 ~~~~spDG~~l~~~~~~ 372 (751)
.++|+|||+.|+|...+
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 16799999999998843
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=173.24 Aligned_cols=239 Identities=22% Similarity=0.238 Sum_probs=150.4
Q ss_pred ceEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+++.+ .-+..+.+.+|+|++. . ..++|+|+++||.+. +...+... ......+...||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-~--~~~~Pvv~~lHG~~~-----------~~~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-D--SGKVPVLYWLSGLTC-----------TDENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-c--CCCCCEEEEecCCCc-----------ChHHHHHh-hhHHHHHhhcCeEEE
Confidence 455555555 3556899999999842 2 236999999999631 11111111 112345567899999
Q ss_pred EcCCCCCCC-------------CCCCC-----CC----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004475 559 AGPSIPIIG-------------EGDKL-----PN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 616 (751)
Q Consensus 559 ~~~~~~~~g-------------~g~~~-----~~----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~ 616 (751)
.++.. .+| .+.+. .. ..+...+.+++...++... ..+|+++++|+|+||||++|+
T Consensus 82 ~pd~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 82 APDTS-PRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred ecCCC-CCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 96642 111 01100 00 0122233444444443332 236888999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhc---CcccccCCCCCCEEEEEcCCCCCCCCChH-H
Q 004475 617 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEM---SPITHANKIKKPILIIHGEVDDKVGLFPM-Q 692 (751)
Q Consensus 617 ~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~li~~G~~D~~vp~~~~-~ 692 (751)
.++.++|++++++++++|+++.....+.........-...+.+.++ +++..+...++|+|++||++|.+++ .. +
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~ 236 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLL 236 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--cccc
Confidence 9999999999999999998774322211100000000111223333 3444455568999999999999987 53 4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++.+++++++.+.+++++++|+.+|.+. ....++++.+.|..++++
T Consensus 237 s~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 237 PENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999865 344555666666666654
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=174.12 Aligned_cols=222 Identities=18% Similarity=0.137 Sum_probs=153.1
Q ss_pred EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 487 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 487 ~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
...+|..+.+.+|.|.. .+.|+|+++||.+. ...........|+.+||.|++ +|.+
T Consensus 6 ~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~---------------~~~~~~~~~~~l~~~g~~via---~D~~ 61 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT------YPKALVFISHGAGE---------------HSGRYEELAENISSLGILVFS---HDHI 61 (276)
T ss_pred ecCCCCEEEEEeccCCC------CCCEEEEEeCCCcc---------------ccchHHHHHHHHHhCCCEEEE---ccCC
Confidence 34688899999998852 23688999999531 111223456678889999999 6777
Q ss_pred CCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004475 567 GEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 567 g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 643 (751)
|+|.+.... ......++|+...++++++.. ...+++++||||||.+|+.++.++|+.++++|+.+|..+......
T Consensus 62 G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~ 139 (276)
T PHA02857 62 GHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPR 139 (276)
T ss_pred CCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccH
Confidence 888764322 233456788888888876542 246799999999999999999999999999999998654211000
Q ss_pred -----------Cccccc----ccch--h---hHHHH----------------H---hc--CcccccCCCCCCEEEEEcCC
Q 004475 644 -----------GFQTEF----RTLW--E---ATNVY----------------I---EM--SPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 644 -----------~~~~~~----~~~~--~---~~~~~----------------~---~~--~~~~~~~~~~~P~li~~G~~ 682 (751)
...... ...+ . ....+ . .. .....+.++++|+|++||++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~ 219 (276)
T PHA02857 140 LNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTN 219 (276)
T ss_pred HHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCC
Confidence 000000 0000 0 00000 0 00 01234567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~ 739 (751)
|.++| +..+..+.+.+.. ++++.++++++|....... .+++++.+.+||+.+
T Consensus 220 D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 220 NEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99999 8988888876633 4689999999999875533 678999999999986
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=178.13 Aligned_cols=232 Identities=20% Similarity=0.175 Sum_probs=152.3
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
+...+..++|.+.+|..|.|+++.|... ++++|+||.+||.|... ........++.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~~----------------~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGRS----------------GDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT--G----------------GGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCCC----------------CCcccccccccCCeE
Confidence 4567889999999999999999999842 45799999999975211 011224467899999
Q ss_pred EEEcCCCCCCCCC------------------CCC-CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 557 VLAGPSIPIIGEG------------------DKL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 557 v~~~~~~~~~g~g------------------~~~-~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
|+.++.++..|.. ... ....++...+.|+.+++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9995544333211 001 223345677899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchh---------------h---HHHHHhcCcccccCCCCCCEEEEE
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE---------------A---TNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
+|+.+ ++++++++..|.+......+.... ...+|. . .+.+.-++....+.+|++|+|+..
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~ 269 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRA-DEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSV 269 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT---STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCC-ccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEE
Confidence 99999 579999998886431100000000 000110 0 112333455667788999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|-.|++|| +......++++.. +.++.+||..+|.... ....++.++||.++
T Consensus 270 gl~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 270 GLQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp ETT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred ecCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 99999999 9999888888853 5799999999998642 22367788999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=163.75 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=163.5
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+.++..+ .++.+++..|.+ +++.|+||++|+-. +........+..++.+||+|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 456677655 789999999987 44469999999841 122223356789999999999977
Q ss_pred CCCCCCCCCCCC--C----c-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 562 SIPIIGEGDKLP--N----D-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 562 ~~~~~g~g~~~~--~----~-----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
-+...|...... . . ........|+.++++||.+++.++..+|+++|+||||.+|+.++.+.| .++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 655444332211 0 0 111466899999999999998889999999999999999999999986 799999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
++.|..-... .....++++|+|+.+|+.|+.+| ......+.+++..+++.+++.
T Consensus 141 ~fyg~~~~~~------------------------~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIADD------------------------TADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCCCc------------------------ccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 9998532100 01145789999999999999998 888899999999988899999
Q ss_pred EeCCCCCcCCccc----------cHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARE----------NVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~----------~~~~~~~~~~~fl~~~l~ 741 (751)
+|+++.|.|.... .....++++++||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998542 135678899999998875
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=175.19 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.+...+...+|..+.+..+.|.. +.|+||++||.+ .........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~---------------~~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRI---------------ESYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCcc---------------chHHHHHHHHHHHHHCCCeEEE-
Confidence 45666777788889998887642 247899999952 1111122345567889999999
Q ss_pred CCCCCCCCCCCCCC--------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 561 PSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 561 ~~~~~~g~g~~~~~--------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
++.+|+|.+... ........+|+..+++.+... .+..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666788776421 123567788888888877554 23468999999999999999999999999999999
Q ss_pred cCCCCCCCC-c-c-----------------------C-ccccc-ccch--hhH-------HHHHhc--------------
Q 004475 633 SGSYNKTLT-P-F-----------------------G-FQTEF-RTLW--EAT-------NVYIEM-------------- 662 (751)
Q Consensus 633 ~~~~d~~~~-~-~-----------------------~-~~~~~-~~~~--~~~-------~~~~~~-------------- 662 (751)
+|....... + . . +.... ...| ... +.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 0 0 00000 0000 000 011100
Q ss_pred -------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCcccc--HHHHHH
Q 004475 663 -------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG---ALSRLVLLPFEHHVYAAREN--VMHVIW 730 (751)
Q Consensus 663 -------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~--~~~~~~ 730 (751)
.....+.++++|+|++||++|.+++ +..++.+++.++..+ ..++++++|+++|....... ...+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456789999999999999999 899999999887654 34689999999999875443 567889
Q ss_pred HHHHHHHHH
Q 004475 731 ETDRWLQKY 739 (751)
Q Consensus 731 ~~~~fl~~~ 739 (751)
.+.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999864
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=177.25 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=162.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.++++.|-++ -..+.++ ........|.|||||++|+|+.-.. ....++|++++++|+..++......
T Consensus 173 ~~l~~~D~dg----~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~- 239 (425)
T COG0823 173 YELALGDYDG----YNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN- 239 (425)
T ss_pred ceEEEEccCC----cceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-
Confidence 3455555544 4444454 2233578899999999999986421 2227999999999987777664442
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
-..++|||||++|+|..... ...+||++|+
T Consensus 240 ----~~~P~fspDG~~l~f~~~rd----------------------------------------------g~~~iy~~dl 269 (425)
T COG0823 240 ----NGAPAFSPDGSKLAFSSSRD----------------------------------------------GSPDIYLMDL 269 (425)
T ss_pred ----cCCccCCCCCCEEEEEECCC----------------------------------------------CCccEEEEcC
Confidence 35779999999999996532 1158999999
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
++ +.++|++. +....+.|||||++|+|.++... ..+||++++++++.++++...+....
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~~~--------- 330 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGNSN--------- 330 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCCcC---------
Confidence 55 77778887 55569999999999999976643 35899999999999888776554333
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
..|||||++ |++.+.. ++ +-.+...++.. +.. ..+........ +.|+|+|+.|.|.+... .
T Consensus 331 ----p~~SpdG~~-i~~~~~~-~g--------~~~i~~~~~~~--~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~ 392 (425)
T COG0823 331 ----PVWSPDGDK-IVFESSS-GG--------QWDIDKNDLAS--GGK-IRILTSTYLNESPSWAPNGRMIMFSSGQG-G 392 (425)
T ss_pred ----ccCCCCCCE-EEEEecc-CC--------ceeeEEeccCC--CCc-EEEccccccCCCCCcCCCCceEEEeccCC-C
Confidence 499999999 8887622 11 12466666531 222 33444444445 89999999999988544 4
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...++.+..++.
T Consensus 393 ~~~l~~~s~~g~ 404 (425)
T COG0823 393 GSVLSLVSLDGR 404 (425)
T ss_pred CceEEEeeccce
Confidence 567888887773
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=152.16 Aligned_cols=235 Identities=20% Similarity=0.260 Sum_probs=170.8
Q ss_pred CCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchH-HHHH
Q 004475 472 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-SLIF 550 (751)
Q Consensus 472 ~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 550 (751)
+.|....++.|++++.+.|..++.+++.+.++ ..|+++++|+.. |++. ..... ...+
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NA-------GNmG--------hr~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANA-------GNMG--------HRLPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCC-------Cccc--------chhhHHHHHH
Confidence 44556668899999999999999999998433 379999999952 1111 11122 2355
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
...+..|+. ..++|||.+.+.. ....+.-|...+++||..++..|..||+++|.|.||.+|+.+|+++.+++.|++
T Consensus 103 ~~l~mnv~i---vsYRGYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLI---VSYRGYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEE---EEeeccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 677999998 5677888875543 345667889999999999999999999999999999999999999989999999
Q ss_pred EccCCCCCCC--CccCccc--ccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 631 ARSGSYNKTL--TPFGFQT--EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 631 ~~~~~~d~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
+...+..... .+..++. ..-..|.... .+.....+.+.+.|.|++.|.+|.+|| +.+.+++++......
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~~-- 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSRT-- 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHh---hhcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchhh--
Confidence 8877654311 1111111 1111121111 122223345678999999999999999 999999999887664
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.++..||++.|.-.-. .+.+++.+.+||.+.-.
T Consensus 252 Krl~eFP~gtHNDT~i--~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWI--CDGYFQAIEDFLAEVVK 284 (300)
T ss_pred hhheeCCCCccCceEE--eccHHHHHHHHHHHhcc
Confidence 4699999999974321 23688899999998765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=171.16 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=162.2
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
....+||+.|-++-..+.++.... .+..+.|||||+.|+|.+......
T Consensus 170 ~~~~~l~~~D~dg~~~~~l~~~~~-----~~~~p~ws~~~~~~~y~~f~~~~~--------------------------- 217 (425)
T COG0823 170 PLPYELALGDYDGYNQQKLTDSGS-----LILTPAWSPDGKKLAYVSFELGGC--------------------------- 217 (425)
T ss_pred CCCceEEEEccCCcceeEecccCc-----ceeccccCcCCCceEEEEEecCCC---------------------------
Confidence 466899999988555667765544 256789999999999985532221
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
.++|++++ +|+..++.+. +.-..++|||||++|+|...... ..+||++|+
T Consensus 218 ------------------~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----------~~~iy~~dl 269 (425)
T COG0823 218 ------------------PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----------SPDIYLMDL 269 (425)
T ss_pred ------------------ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----------CccEEEEcC
Confidence 47999999 6765555554 66778999999999999876642 568999999
Q ss_pred CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe
Q 004475 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
.++...+|+...+....| +|||||++ |+|++ +...+.+||+++++ ++..+.++.
T Consensus 270 ~~~~~~~Lt~~~gi~~~P-------------s~spdG~~-ivf~S---------dr~G~p~I~~~~~~---g~~~~riT~ 323 (425)
T COG0823 270 DGKNLPRLTNGFGINTSP-------------SWSPDGSK-IVFTS---------DRGGRPQIYLYDLE---GSQVTRLTF 323 (425)
T ss_pred CCCcceecccCCccccCc-------------cCCCCCCE-EEEEe---------CCCCCcceEEECCC---CCceeEeec
Confidence 999888887777665544 99999999 99986 23344599999998 778888888
Q ss_pred eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 297 LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..+... +.|||||++|+|.... .+...+...++.++ ...+.++.. ... .. ++|+++|+.|.|.+
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~-~~~~~lt~~-~~~-----e~--ps~~~ng~~i~~~s 388 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASG-GKIRILTST-YLN-----ES--PSWAPNGRMIMFSS 388 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCC-CcEEEcccc-ccC-----CC--CCcCCCCceEEEec
Confidence 888887 9999999999998822 23366778887775 223444332 221 11 77999999999988
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-17 Score=169.87 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=158.1
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.....+...++..+.+..|.|.. ..+.|+||++||.+. ........+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~---------------~~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNE---------------HSGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchH---------------HHHHHHHHHHHHHHCCCEEEE-
Confidence 45566777777889999999864 224689999999531 011112456678889999999
Q ss_pred CCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---ceeEEEEccC
Q 004475 561 PSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---LFCCGIARSG 634 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~~ 634 (751)
++.+|+|.+.... ...+...+|+..+++++.... +..+++++||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6677887765432 234566889999999997652 2347999999999999987664 554 7899999998
Q ss_pred CCCCCCCc----------------cCcccc--c-ccchhhHH----HH------------------Hhc-C-cccccCCC
Q 004475 635 SYNKTLTP----------------FGFQTE--F-RTLWEATN----VY------------------IEM-S-PITHANKI 671 (751)
Q Consensus 635 ~~d~~~~~----------------~~~~~~--~-~~~~~~~~----~~------------------~~~-~-~~~~~~~~ 671 (751)
........ +.+... . .....++. .+ ... . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 75422100 000000 0 00000000 00 000 0 12345678
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++|+|++||++|.++| +..++++++.+... ..+++++++++|.....+..+++++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999998876543 457889999999987666788999999999999875
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=167.82 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=156.6
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v 557 (751)
+..+.+.++..+| .+.+.+|.|.. . ..|+||++|||||..++ ...+ ...+..|+. .|+.|
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~-----~-~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~la~~~g~~V 115 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP-----D-SQATLFYLHGGGFILGN--------LDTH----DRIMRLLASYSGCTV 115 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC-----C-CCCEEEEEeCCcccCCC--------chhh----hHHHHHHHHHcCCEE
Confidence 3477788887666 59999999953 1 26999999999875432 2222 134556666 59999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeE
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCC 628 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~ 628 (751)
+.++|+....+ ......+|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+. +..+++
T Consensus 116 v~vdYrlape~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~ 187 (318)
T PRK10162 116 IGIDYTLSPEA--------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAG 187 (318)
T ss_pred EEecCCCCCCC--------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhh
Confidence 99777533221 1233578888999999764 347889999999999999999998753 356889
Q ss_pred EEEccCCCCCCCCccCccccccc-ch--hhHHHHH---------hcCcccc--cCCC---CCCEEEEEcCCCCCCCCChH
Q 004475 629 GIARSGSYNKTLTPFGFQTEFRT-LW--EATNVYI---------EMSPITH--ANKI---KKPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~~~~-~~--~~~~~~~---------~~~~~~~--~~~~---~~P~li~~G~~D~~vp~~~~ 691 (751)
+++++|.++.............. .+ ...+.+. ..+|... ...+ -+|+||++|+.|++. .
T Consensus 188 ~vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~----d 263 (318)
T PRK10162 188 VLLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL----D 263 (318)
T ss_pred eEEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc----C
Confidence 99999987743211000000000 00 0111111 1112111 1222 379999999999984 5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhc
Q 004475 692 QAERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 692 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 741 (751)
+++.+.++|+++|++++++++++..|+|... +...+.++.+.+||.++++
T Consensus 264 e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999998543 2345678889999998864
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=154.34 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=160.1
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~ 558 (751)
..+-+..+++.|..+.+..+.|+.. ..++++|+||.. .+ .+ ....+...+.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa---~D-----lg-------q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNA---AD-----LG-------QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcc---cc-----hH-------HHHHHHHHHhhcccceEE
Confidence 4566667777888999999998762 358999999941 00 00 00112223333 489999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
. ++++|+|.+.+.. ....+.+|+.++++||++... ..++|+|+|+|+|...++.+|++.| +.++|+.+|+.+-
T Consensus 93 ~---~DYSGyG~S~G~p-sE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKP-SERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCc-ccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 7888998875543 234778999999999999876 6789999999999999999999997 8999999998763
Q ss_pred CCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 639 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
..... .......|. ..+..+..+..+++|+|++||+.|.++| ..+..+++++.+.+ ++..+..|++|.
T Consensus 166 ~rv~~--~~~~~~~~~-----d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYCF-----DAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEee-----ccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 22111 111111221 1122255677789999999999999999 99999999998754 567788899997
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
.. +...+++..+..|+......
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhccc
Confidence 63 33447888888888876653
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=149.99 Aligned_cols=198 Identities=18% Similarity=0.161 Sum_probs=145.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC--CCchhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--PNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~--~~~~~~~~~~~d~~~~v~ 590 (751)
.+|+++|| +.|++..+. .+..+|.++||.|.+ +.++|+|... .-.....++++|+.++++
T Consensus 16 ~AVLllHG-----------FTGt~~Dvr----~Lgr~L~e~GyTv~a---P~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHG-----------FTGTPRDVR----MLGRYLNENGYTVYA---PRYPGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEec-----------cCCCcHHHH----HHHHHHHHCCceEec---CCCCCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 78999999 455555554 456788899999999 4456776642 122335688999999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc----------c-cc----------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ----------T-EF---------- 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~----------~-~~---------- 649 (751)
+|.+.+. +.|++.|.||||.+|+.+|.+.| ++++|.+|+.++.......+. . +.
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998764 68999999999999999999997 788998888765221110000 0 00
Q ss_pred ----ccchhhHHHHHhc--CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 650 ----RTLWEATNVYIEM--SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 650 ----~~~~~~~~~~~~~--~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
..++.....+... .....+++|..|+|+++|.+|+.|| .+.+.-+++.+... +.++.+|.+.||.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 0011111111111 1234578899999999999999999 89998899887654 568999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 004475 724 NVMHVIWETDRWLQ 737 (751)
Q Consensus 724 ~~~~~~~~~~~fl~ 737 (751)
..+++.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 88999999999996
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-18 Score=153.29 Aligned_cols=232 Identities=17% Similarity=0.167 Sum_probs=157.5
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
+..++-.++|++.+|.+|.||+.+|... +++.|+||.+||.+.+. ..+. -...++..||+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY~g~~-----------g~~~-----~~l~wa~~Gya 111 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGYGGRG-----------GEWH-----DMLHWAVAGYA 111 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeeccCCC-----------CCcc-----cccccccccee
Confidence 3456778999999999999999999762 36799999999974211 1111 12345788999
Q ss_pred EEEcCCCCCCCCCC----CC----------------CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004475 557 VLAGPSIPIIGEGD----KL----------------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 616 (751)
Q Consensus 557 v~~~~~~~~~g~g~----~~----------------~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~ 616 (751)
|+..+.++..+... .. ....++.....|+.++++.+.+...+|..||++.|.|+||.+++
T Consensus 112 vf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglal 191 (321)
T COG3458 112 VFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLAL 191 (321)
T ss_pred EEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhh
Confidence 99944443332211 00 11122345688999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCcccccccchh------------hHHHHHh---cCcccccCCCCCCEEEEEcC
Q 004475 617 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE------------ATNVYIE---MSPITHANKIKKPILIIHGE 681 (751)
Q Consensus 617 ~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~~P~li~~G~ 681 (751)
.+++.. .+++++++..|........+.... ..++. ..+.+.. .+....+..+|.|+|+..|.
T Consensus 192 aaaal~-~rik~~~~~~Pfl~df~r~i~~~~--~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL 268 (321)
T COG3458 192 AAAALD-PRIKAVVADYPFLSDFPRAIELAT--EGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGL 268 (321)
T ss_pred hhhhcC-hhhhcccccccccccchhheeecc--cCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecc
Confidence 999999 478999999997542211111110 01110 0111111 12233456789999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.|++|| +.-...+++++.. +.++.+||.-+|.... ....+++..|+....
T Consensus 269 ~D~vcp--PstqFA~yN~l~~---~K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l~ 318 (321)
T COG3458 269 MDPVCP--PSTQFAAYNALTT---SKTIEIYPYFAHEGGP----GFQSRQQVHFLKILF 318 (321)
T ss_pred cCCCCC--ChhhHHHhhcccC---CceEEEeeccccccCc----chhHHHHHHHHHhhc
Confidence 999998 8888888888764 3578888888897542 123345677776543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-15 Score=148.62 Aligned_cols=342 Identities=11% Similarity=0.092 Sum_probs=172.7
Q ss_pred CCcccccCCCCc---ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe
Q 004475 19 GPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (751)
Q Consensus 19 g~~~~l~~~~~~---~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 95 (751)
-+.++||..+.. ....++.|.+||++|+|.+.+ ++..+||++|+++++.+|||.++... .....+|
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s 89 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLS 89 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----ccceEEe
Confidence 345566643221 156789999999999997643 67799999999999999999987532 1245889
Q ss_pred cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC
Q 004475 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP 174 (751)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~ 174 (751)
|+++.|+|.... ..|+.+|+ +++.+.|..-
T Consensus 90 ~~~~~~~Yv~~~-------------------------------------------------~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 90 PDDRALYYVKNG-------------------------------------------------RSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp TTSSEEEEEETT-------------------------------------------------TEEEEEETTT--EEEEEE-
T ss_pred cCCCeEEEEECC-------------------------------------------------CeEEEEECCcCcEEEEEEC
Confidence 999999886211 47899999 6666555332
Q ss_pred --ceEEeeee--CCCCceEEEEEecCCcccccc-c--------CCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 175 --AVYTAVEP--SPDQKYVLITSMHRPYSYKVP-C--------ARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 175 --~~~~~~~~--SpDG~~i~~~~~~~~~~~~~~-~--------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
.......| ..|++.++.....+....... . ..-...|+.+|+.+++.+.+.....
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------------ 188 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------------ 188 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------------
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc------------
Confidence 33333444 567888776654432111000 0 1113679999999998887644321
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ce-eEE-EEEecCCceEEEeeee
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DL-RFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~-~~~-~~~spdg~~l~~~~~~ 318 (751)
-+..+.+||.-..+|+|+-.. ... .+ ..+|++++.+ ++..+.+... .+ .+. --|+|||..|+|..-.
T Consensus 189 -wlgH~~fsP~dp~li~fCHEG--pw~--~V--d~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 189 -WLGHVQFSPTDPTLIMFCHEG--PWD--LV--DQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp --EEEEEEETTEEEEEEEEE-S---TT--TS--S-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred -cccCcccCCCCCCEEEEeccC--Ccc--ee--ceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 134779999998889997521 111 11 1378999986 6566665433 22 233 7899999999997642
Q ss_pred c-ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeE
Q 004475 319 K-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 397 (751)
Q Consensus 319 ~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 397 (751)
. ....-|..++++++ +.+.+...+.. .. +.-|+||+.++=-.-+ ..... -..++.. -...+.|+
T Consensus 259 ~~~~~~~i~~~d~~t~--~~~~~~~~p~~--~H------~~ss~Dg~L~vGDG~d--~p~~v--~~~~~~~-~~~~p~i~ 323 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG--ERRRLMEMPWC--SH------FMSSPDGKLFVGDGGD--APVDV--ADAGGYK-IENDPWIY 323 (386)
T ss_dssp TTT--EEEEEE-TTT----EEEEEEE-SE--EE------EEE-TTSSEEEEEE------------------------EEE
T ss_pred CCCCceEEEeeCCCCC--CceEEEeCCce--ee------eEEcCCCCEEEecCCC--CCccc--cccccce-ecCCcEEE
Confidence 2 23446788888885 33444433221 11 5578999865432211 00000 0000111 02345899
Q ss_pred EEecCCCceeEEeeccch-hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 398 LFDINTGSKERIWESNRE-KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 398 ~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+++++++....|...... ....+-.. ....-++|||||++++|+. +...++.||.+++..
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q--~~hPhp~FSPDgk~VlF~S-d~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQ--VTHPHPSFSPDGKWVLFRS-DMEGPPAVYLVEIPD 384 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSS--TT----EE-TTSSEEEEEE--TTSS-EEEEEE--C
T ss_pred EeccccCceeeeeeccCcceeecCCCc--cCCCCCccCCCCCEEEEEC-CCCCCccEEEEeCcc
Confidence 999998887777554321 00000000 0122379999999999995 567789999998753
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=153.02 Aligned_cols=127 Identities=21% Similarity=0.146 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++++.++..+++++|+++|||+||.+++.++..+|+.+.+++++++.+... .
T Consensus 84 ~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~------~--------------- 142 (232)
T PRK11460 84 MPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASL------P--------------- 142 (232)
T ss_pred HHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccccc------c---------------
Confidence 4455667777777777888999999999999999999999988888888887743200 0
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.....++|+|++||+.|++|| +..++++++.|++.+.++++++||+++|.+.. +.+..+.+||.+.+.
T Consensus 143 -----~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 143 -----ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTVP 210 (232)
T ss_pred -----ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHcc
Confidence 011246899999999999999 99999999999999999999999999999863 566677777777663
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=142.03 Aligned_cols=251 Identities=12% Similarity=0.073 Sum_probs=178.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccce-eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC-
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFV-SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES- 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p-~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~- 80 (751)
.+.|||-.||++ ...|+.|+..+ ..| ..+-||++|+| ...++||+.|+++...+.|--+
T Consensus 246 G~GnlYSvdldG----kDlrrHTnFtd----YY~R~~nsDGkrIvF-----------q~~GdIylydP~td~lekldI~l 306 (668)
T COG4946 246 GVGNLYSVDLDG----KDLRRHTNFTD----YYPRNANSDGKRIVF-----------QNAGDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred CccceEEeccCC----chhhhcCCchh----ccccccCCCCcEEEE-----------ecCCcEEEeCCCcCcceeeecCC
Confidence 356999999999 88999986543 233 37899999999 5668999999998776666322
Q ss_pred CCc---cccceee---ee-EEe-cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhh
Q 004475 81 PDI---CLNAVFG---SF-VWV-NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD 152 (751)
Q Consensus 81 ~~~---~~~~~~~---~~-~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (751)
+-. ...-.+. -+ .+| .+|.+|++.+.
T Consensus 307 pl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR---------------------------------------------- 340 (668)
T COG4946 307 PLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR---------------------------------------------- 340 (668)
T ss_pred ccccccccccccCHHHhhhhhccCCCcEEEEEec----------------------------------------------
Confidence 110 0000000 01 144 36788887743
Q ss_pred hheeeEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 153 YYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 153 ~~~~~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
++.++++. .|-..++...+.+....++-|++.+++...+. ..|-+++.+|++.+++...-
T Consensus 341 ----GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~l--- 401 (668)
T COG4946 341 ----GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKDL--- 401 (668)
T ss_pred ----CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCCc---
Confidence 57888888 66777787777788888888998776654432 25779999999877663332
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece-eEE-EEEecCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFS-VSWCDDS 309 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~-~~~spdg 309 (751)
..+-.+..||||++ ++.++ .+.+|++++++ .+.++.+..... -+. +.|+|++
T Consensus 402 ----------g~I~av~vs~dGK~-~vvaN------------dr~el~vidid---ngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 402 ----------GNIEAVKVSPDGKK-VVVAN------------DRFELWVIDID---NGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred ----------cceEEEEEcCCCcE-EEEEc------------CceEEEEEEec---CCCeeEecccccceeEEEEEcCCc
Confidence 22447899999999 67654 56799999997 667777776544 455 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
++|+|+-...-..+.|-+++++++ +.-.+|.....+. . |+|.|||++|+|.+.+
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~Df-----s--PaFD~d~ryLYfLs~R 509 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYDF-----S--PAFDPDGRYLYFLSAR 509 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCC--eEEEecCCccccc-----C--cccCCCCcEEEEEecc
Confidence 999998764435568888999884 4455555544432 2 7799999999999975
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=150.45 Aligned_cols=232 Identities=19% Similarity=0.187 Sum_probs=158.8
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
..+..+...++..+....+.+.+. +..+||++||.+ .+...+..++..|..+||.|++
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~- 66 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA- 66 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE-
Confidence 344556678899999999988651 237899999963 2223334567788999999999
Q ss_pred CCCCCCCCCCCC-CCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 561 PSIPIIGEGDKL-PND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 561 ~~~~~~g~g~~~-~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
.|.+|+|.+. ... ..+.+...|+...++.+.+.. -..+++++||||||.+|+.++.+++..+.++|+.+|.+
T Consensus 67 --~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~ 142 (298)
T COG2267 67 --LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPAL 142 (298)
T ss_pred --ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccc
Confidence 7788888875 222 224566777777777776641 23689999999999999999999999999999999987
Q ss_pred CCCC--C-----------------ccCccc----ccccch--hhH---HHHHh--------------------c--Cccc
Q 004475 637 NKTL--T-----------------PFGFQT----EFRTLW--EAT---NVYIE--------------------M--SPIT 666 (751)
Q Consensus 637 d~~~--~-----------------~~~~~~----~~~~~~--~~~---~~~~~--------------------~--~~~~ 666 (751)
.... . .+.... .....| .++ +.|.+ . ....
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 143 GLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred cCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchh
Confidence 6441 0 000111 000000 000 01100 0 1112
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH--HHHHHHHHHHHHHHhc
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 741 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l~ 741 (751)
....+++|+|+++|+.|.+++. .....++++++... ++++++++++.|........ +++++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCccccC-cHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 2456789999999999999861 24445555444332 36899999999999877777 8999999999998764
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=157.16 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=135.4
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFA 556 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~ 556 (751)
....+++.|+..+ ..|.+++++|.. .++.|+||++-|. +.+..-..... .+|+.+|++
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~-----~~p~P~VIv~gGl---------------Ds~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG-----EKPYPTVIVCGGL---------------DSLQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS-----SS-EEEEEEE--T---------------TS-GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC-----CCCCCEEEEeCCc---------------chhHHHHHHHHHHHHHhCCCE
Confidence 4568999998654 889999999984 4578999988663 22222222222 256789999
Q ss_pred EEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 557 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
++. .+.+|.|.+.... ..++...-...+++||.+.++||..||+++|.|+||+.|.++|..++++++++|+.++++
T Consensus 221 ~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 221 MLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp EEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred EEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 999 5555655542211 112222234588999999999999999999999999999999998888999999999976
Q ss_pred CCCCCccCccccc------------ccchhhH----HHHHhcCcccc--c--CCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 637 NKTLTPFGFQTEF------------RTLWEAT----NVYIEMSPITH--A--NKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 637 d~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~--~--~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
...+......... +...... .....+|...+ + .+..+|+|.+.|++|+++| .+..+.+
T Consensus 297 h~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~li 374 (411)
T PF06500_consen 297 HHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRLI 374 (411)
T ss_dssp SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHHH
T ss_pred hhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHHH
Confidence 5433221100000 0000001 11233343331 3 5567999999999999998 6665444
Q ss_pred HHHHHhCCCcEEEEEeCCCC-CcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEH-HVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
. ..+.+-+...++... |. .....+..+.+||++.|
T Consensus 375 a----~~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 375 A----ESSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp H----HTBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred H----hcCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3 333344566666543 32 24477889999999875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=147.35 Aligned_cols=129 Identities=30% Similarity=0.340 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++...+.. ++++||++.|+|+||.||+.++.++|+.+.++|+++|........ .
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~---~--------------- 147 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL---E--------------- 147 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC---H---------------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc---c---------------
Confidence 444455555554444 899999999999999999999999999999999999975321100 0
Q ss_pred cCcccccCC-CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 662 MSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 662 ~~~~~~~~~-~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
..... -++|+|++||..|+++| ...+++.++.|++.+.+++++.|++.+|.+. .+.+..+.+||.+++
T Consensus 148 ----~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 148 ----DRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ----CCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ----ccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 00111 16899999999999999 9999999999999999999999999999985 367888999999874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=148.29 Aligned_cols=189 Identities=18% Similarity=0.139 Sum_probs=115.9
Q ss_pred EEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC--C
Q 004475 496 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--P 573 (751)
Q Consensus 496 ~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~--~ 573 (751)
+++|+|++. .+++|+||++||++.... .+.. ...+...+.+.||+|+++++++..+.+... .
T Consensus 1 ~~ly~P~~~----~~~~P~vv~lHG~~~~~~-----------~~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGL----TGPRALVLALHGCGQTAS-----------AYVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCC----CCCCCEEEEeCCCCCCHH-----------HHhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 368899874 235899999999763211 1110 001233344579999996664332111100 0
Q ss_pred Cc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc-Cccccc
Q 004475 574 ND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF-GFQTEF 649 (751)
Q Consensus 574 ~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~-~~~~~~ 649 (751)
.. ........++..+++++.++..+|++||+|+|||+||.+++.++.++|+.+++++++++......... ......
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 00 01123467788899999888789999999999999999999999999999999999887632110000 000000
Q ss_pred ccchhhHHHHHhc-Cc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC
Q 004475 650 RTLWEATNVYIEM-SP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703 (751)
Q Consensus 650 ~~~~~~~~~~~~~-~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~ 703 (751)
..-.....+.+. .. .....+..+|++++||++|.+|| +..++++++++++.
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 -CTAATAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred -CCCCCHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 000011111111 00 11122334567899999999999 99999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-15 Score=139.71 Aligned_cols=289 Identities=13% Similarity=0.112 Sum_probs=162.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||.- .+...+.++|+.+..+.....+..+ -+..++|||||++|+..+.+
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~d---- 178 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSKD---- 178 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCcc----EEEEEEECCCcchhhccccC----
Confidence 67889999999999983 4556777777776544333333221 46788999999999977543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC-ceEEeeee-----
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEP----- 182 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~-~~~~~~~~----- 182 (751)
+.|.++|. +| ..+.|..+ ..+..++|
T Consensus 179 ---------------------------------------------g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 179 ---------------------------------------------GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred ---------------------------------------------CeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 57888888 66 33556555 66766666
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCC--------C-C------------------
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAED--------I-P------------------ 234 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~--------~-~------------------ 234 (751)
.|..++|+-.+.+ +++.+||+..+.. ..++.+..... . .
T Consensus 214 ~p~~r~las~skD-------------g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 214 VPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred CCCccceecccCC-------------CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH
Confidence 4567766655433 3577888875543 33333321100 0 0
Q ss_pred -CccCCccCCCce-----------eeeecCCCceEEEEEe------------ccCCCCccccCcccceeeccCCCCCCCC
Q 004475 235 -VCYNSVREGMRS-----------ISWRADKPSTLYWVEA------------QDRGDANVEVSPRDIIYTQPAEPAEGEK 290 (751)
Q Consensus 235 -~~~~~~~~~~~~-----------~~~spdG~~~i~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (751)
..+......+.. =+|.|.|++.--+.+. .+.+.--+...+...+|+++-. .....
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-~~kkp 359 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-KSKKP 359 (480)
T ss_pred HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc-ccccc
Confidence 000000011111 1222333220000000 0000001112233577777752 11223
Q ss_pred ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEe
Q 004475 291 PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 369 (751)
Q Consensus 291 ~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~ 369 (751)
.+..+.+...+. +.||||+++|+-++-. ..+-+.+..++ +....+.+....++. ++||.|.+.|+..
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFD----kSVkLW~g~tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~ 427 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFD----KSVKLWDGRTG--KFLASFRGHVAAVYQ------VAWSADSRLLVSG 427 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecc----cceeeeeCCCc--chhhhhhhccceeEE------EEeccCccEEEEc
Confidence 345566666677 9999999999876632 23444455554 222234445566666 8999999988887
Q ss_pred eeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee-EEeeccchhhhhceeeeecCCcceeeccCCCEEEE
Q 004475 370 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESNREKYFETAVALVFGQGEEDINLNQLKILT 442 (751)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 442 (751)
+.+. .|.+|++.+.+.. .|..... .|.. +.|||||++++-
T Consensus 428 SkDs---------------------TLKvw~V~tkKl~~DLpGh~D-----EVf~-------vDwspDG~rV~s 468 (480)
T KOG0271|consen 428 SKDS---------------------TLKVWDVRTKKLKQDLPGHAD-----EVFA-------VDWSPDGQRVAS 468 (480)
T ss_pred CCCc---------------------eEEEEEeeeeeecccCCCCCc-----eEEE-------EEecCCCceeec
Confidence 7543 7999999877653 2322221 1333 489999987663
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=150.38 Aligned_cols=222 Identities=19% Similarity=0.196 Sum_probs=149.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
..+..+.+.+|.|.. ....+.|+|||+|||||..++. ... .......++..|+.|+.++|+-...
T Consensus 59 ~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g~~--------~~~---~~~~~~~~~~~g~~vv~vdYrlaPe- 123 (312)
T COG0657 59 PSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLGSL--------RTH---DALVARLAAAAGAVVVSVDYRLAPE- 123 (312)
T ss_pred CCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeecCh--------hhh---HHHHHHHHHHcCCEEEecCCCCCCC-
Confidence 344458899999921 1233589999999999765433 211 1123445567899999988853322
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCCCCC
Q 004475 569 GDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLT 641 (751)
Q Consensus 569 g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~d~~~~ 641 (751)
..+...++|+.+++.|++++. .+|+++|+++|+|.||++|+.++....+ ...+.++++|..|....
T Consensus 124 -------~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~ 196 (312)
T COG0657 124 -------HPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSS 196 (312)
T ss_pred -------CCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCccc
Confidence 233566888999999999763 4899999999999999999999876543 47889999998886541
Q ss_pred ccCcc-cccccchhh-------HHHHH---------hcCcccc--cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 642 PFGFQ-TEFRTLWEA-------TNVYI---------EMSPITH--ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 642 ~~~~~-~~~~~~~~~-------~~~~~---------~~~~~~~--~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
...+. ......... ...|. ..+|+.. +.. -+|+|+++|+.|.+. .+++.+.++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~----~~~~~~a~~L~~ 271 (312)
T COG0657 197 AASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLR----DEGEAYAERLRA 271 (312)
T ss_pred ccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcch----hHHHHHHHHHHH
Confidence 10010 000000000 00110 1222221 222 478999999999984 588899999999
Q ss_pred CCCcEEEEEeCCCCCcCCccc--cHHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARE--NVMHVIWETDRWLQ 737 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~fl~ 737 (751)
+|++++++.+++..|.|.... .....+..+.+|+.
T Consensus 272 agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 272 AGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred cCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 999999999999999884333 23445667777776
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=141.22 Aligned_cols=208 Identities=19% Similarity=0.192 Sum_probs=137.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCc-cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPL-PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..|.++...+|.|.++.++++ + |+|||+||+|.+..+..-.+..+..... -..-+.++-|++|.+-....
T Consensus 169 ~tgneLkYrly~Pkdy~pdkk--y~PLvlfLHgagq~g~dn~~~l~sg~gaia-------wa~pedqcfVlAPQy~~if~ 239 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKK--YYPLVLFLHGAGQGGSDNDKVLSSGIGAIA-------WAGPEDQCFVLAPQYNPIFA 239 (387)
T ss_pred ccCceeeEEEecccccCCCCc--cccEEEEEecCCCCCchhhhhhhcCcccee-------eecccCceEEEccccccccc
Confidence 456789999999999988774 6 9999999998766554433332211100 01122456777755422111
Q ss_pred CCCCCCCchhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 568 EGDKLPNDRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 568 ~g~~~~~~~~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
..++ ... ........++ +-|.+++.||.+||.++|.|+||++++.++.++|+.|++++.++|--|..
T Consensus 240 d~e~-~t~----~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v------- 307 (387)
T COG4099 240 DSEE-KTL----LYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV------- 307 (387)
T ss_pred cccc-ccc----hhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-------
Confidence 1111 111 1122233444 47778899999999999999999999999999999999999999965421
Q ss_pred cccccchhhHHHHHhcCcccccCC-CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC---CCCcCCcc
Q 004475 647 TEFRTLWEATNVYIEMSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF---EHHVYAAR 722 (751)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~H~~~~~ 722 (751)
.+++. -+.|+.++|+.+|.++| .+.++-+++.|++.+.++.+..|.. ..|+....
T Consensus 308 -------------------~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~ 366 (387)
T COG4099 308 -------------------YLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHS 366 (387)
T ss_pred -------------------hhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhhhccccccccCCC
Confidence 01111 25899999999999999 9999999999999888877776652 23333322
Q ss_pred ccHH--HHHHHHHHHHHH
Q 004475 723 ENVM--HVIWETDRWLQK 738 (751)
Q Consensus 723 ~~~~--~~~~~~~~fl~~ 738 (751)
..+. ....++++||-+
T Consensus 367 g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 367 GVWWATYNDAEAIEWLLK 384 (387)
T ss_pred CcceeecCCHHHHHHHHh
Confidence 2221 123456777754
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=151.17 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=146.7
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccC-------------CCCccCCCCchHHHHHHh
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRG-------------SPNEFSGMTPTSSLIFLA 552 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 552 (751)
|.+.+|..+..+.|.|+. +..+|+++||-+.-+.. ..+.. .+..+..+...++..|.+
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 345688889999998853 35799999995421100 00000 000110111245778899
Q ss_pred CCeEEEEcCCCCCCCCCCCCCC---c---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPN---D---RFVEQLVSSAEAAVEEVVRR------------------GVADPSRIAVGGH 608 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~---~---~~~~~~~~d~~~~v~~l~~~------------------~~id~~~i~l~G~ 608 (751)
+||.|++ .+.+|+|.+... . ....+.++|+...++.+.+. ..-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 677788866432 1 23567788888888887652 0111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------ceeEEEEccCCCCCCCC--------c----------------cCcccccccch---
Q 004475 609 SYGAFMTAHLLAHAPH--------LFCCGIARSGSYNKTLT--------P----------------FGFQTEFRTLW--- 653 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~--------~~~~~v~~~~~~d~~~~--------~----------------~~~~~~~~~~~--- 653 (751)
||||.+++.++...++ .++++|+.+|.+..... . ..........+
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58888888876421100 0 00000000000
Q ss_pred h------h---------HHH---HHhc--CcccccCCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 654 E------A---------TNV---YIEM--SPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 654 ~------~---------~~~---~~~~--~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
. + ... +... .....+.++ ++|+|++||++|.+++ +..++.+++++.. ..+++++
T Consensus 230 ~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~--~~~~l~~ 305 (332)
T TIGR01607 230 VNDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSI--SNKELHT 305 (332)
T ss_pred hhhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccC--CCcEEEE
Confidence 0 0 000 0000 001123444 6899999999999998 8888888776543 3468899
Q ss_pred eCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 712 LPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 712 ~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+++++|.+.......+++..+.+||.
T Consensus 306 ~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 306 LEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 99999999876667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=152.96 Aligned_cols=226 Identities=17% Similarity=0.230 Sum_probs=117.1
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc---CCCCccCCCCchHHHHHHh
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR---GSPNEFSGMTPTSSLIFLA 552 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 552 (751)
.+.+..|++.|....+..+.++++.|++. ++|.|+||++||.|.....-.+... ................|+.
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 45578899999999999999999999874 4679999999997643211111110 1111122223345779999
Q ss_pred CCeEEEEcCCCCCCCCCCCCCC------c--h--------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPN------D--R--------------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 610 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~------~--~--------------~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~ 610 (751)
+||+|+++|. .|+|+.... . . +.....-|...+++||.+++.||++||+++|+||
T Consensus 159 ~GYVvla~D~---~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDA---LGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE-----TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEcc---ccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 9999999554 444432110 0 0 0112245667799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEEccCCCCCCC--Ccc---------CcccccccchhhHHHHHhcCcccccCCCCCCEEEEE
Q 004475 611 GAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPF---------GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 611 GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
||+.++++++.. +++++.|+.+.+..... ... ++.......-+....+.++.-+.-+ -...|+|++.
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasl-iAPRPll~~n 313 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASL-IAPRPLLFEN 313 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHT-TTTS-EEESS
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHH-hCCCcchhhc
Confidence 999999999999 78888887655421100 000 0000000000000000000000000 1247999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
|..|..+| . .+..|+.+ .++.++++..||+.
T Consensus 314 G~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 314 GGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp -B-HHHHH--H--HHHHHHHT-T-GGGEEE---GGG
T ss_pred CCcccccH--H--HHHHHHhc-CCCcceEEeecccc
Confidence 99998865 3 44555443 33457888888864
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-14 Score=158.86 Aligned_cols=192 Identities=23% Similarity=0.248 Sum_probs=141.9
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRR---------------GVADPSRIAVGGH 608 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~~l~~~---------------~~id~~~i~l~G~ 608 (751)
.+..+|+.+||+|+. .+.+|.+.+.+... +.....+|..++|+||..+ ++. ..||+++|.
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 456789999999999 56667666654322 2366789999999999853 232 479999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---------ccCccccc---------------------ccchh----
Q 004475 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------PFGFQTEF---------------------RTLWE---- 654 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---------~~~~~~~~---------------------~~~~~---- 654 (751)
||||++++.+|+..|+.++++|+.+++.++... +.++..+. ...+.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988899999999887653210 00110000 00000
Q ss_pred ------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc
Q 004475 655 ------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 655 ------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 722 (751)
..+.|...++..+++++++|+|++||..|..++ +.++.+++++|++.+.+.++.+.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012344556677888999999999999999998 8999999999999888889988776 5865544
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 004475 723 ENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~l~~~ 743 (751)
....++.+.+.+||+++|+..
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred hhHHHHHHHHHHHHHhccccC
Confidence 445678889999999998753
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=142.99 Aligned_cols=235 Identities=14% Similarity=0.107 Sum_probs=155.4
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v 557 (751)
+....+.+. ....+...+|+|....+. .+.|+|||+|||||..++.. ...+..++..++ ..+.+|
T Consensus 61 v~~~dv~~~--~~~~l~vRly~P~~~~~~--~~~p~lvyfHGGGf~~~S~~----------~~~y~~~~~~~a~~~~~vv 126 (336)
T KOG1515|consen 61 VTSKDVTID--PFTNLPVRLYRPTSSSSE--TKLPVLVYFHGGGFCLGSAN----------SPAYDSFCTRLAAELNCVV 126 (336)
T ss_pred ceeeeeEec--CCCCeEEEEEcCCCCCcc--cCceEEEEEeCCccEeCCCC----------CchhHHHHHHHHHHcCeEE
Confidence 334555555 344689999999875542 24899999999998654321 112234455554 579999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcee
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFC 627 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~------p~~~~ 627 (751)
+.++|+-- +....+..++|...++.|+.++ ..+|++||+|+|-|.||++|..++.+. +-+++
T Consensus 127 vSVdYRLA--------PEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~ 198 (336)
T KOG1515|consen 127 VSVDYRLA--------PEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIK 198 (336)
T ss_pred EecCcccC--------CCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceE
Confidence 99888532 2233455678888999998875 458999999999999999999998643 24689
Q ss_pred EEEEccCCCCCCCCcc---C--cccccccchhhHHHHHh--------------cCccc-----ccCCCC-CCEEEEEcCC
Q 004475 628 CGIARSGSYNKTLTPF---G--FQTEFRTLWEATNVYIE--------------MSPIT-----HANKIK-KPILIIHGEV 682 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~---~--~~~~~~~~~~~~~~~~~--------------~~~~~-----~~~~~~-~P~li~~G~~ 682 (751)
+.|++.|++.-..... . ........+...+.++. .++.. ...... +|+|++.++.
T Consensus 199 g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~ 278 (336)
T KOG1515|consen 199 GQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGY 278 (336)
T ss_pred EEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCc
Confidence 9999999865221110 0 00001111111111111 01121 011122 5699999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc----cHHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE----NVMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~fl~~~ 739 (751)
|.+ .+++..+.++|++.|+++++..++++.|++.... .....++++.+|+.+.
T Consensus 279 D~L----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 279 DVL----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhh----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 988 6889999999999999999999999999975433 3345677778887653
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-15 Score=161.74 Aligned_cols=131 Identities=20% Similarity=0.294 Sum_probs=99.9
Q ss_pred EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 487 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 487 ~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
+..+|.++.+.+|.|.+ .+++|+||++||.+..... ...+.......|+++||+|++ .+.+
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDTR 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eecc
Confidence 45689999999999975 2358999999996521100 001111234578899999999 5666
Q ss_pred CCCCCCCCchhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 567 GEGDKLPNDRFV-EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 567 g~g~~~~~~~~~-~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
|+|.+....... ....+|+.++++|+.++++.+ .+|+++|+|+||.+++.+|..+|+.++++|+.++..+
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 777765432222 567899999999999988766 6999999999999999999999999999999888765
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=147.76 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +... +........+||.|++ ++.+|+|.+.... ....+..+++.+.
T Consensus 13 ~~~iv~lhG~~~-----------~~~~-----~~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGG-----------SGSY-----WAPQLDVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCc-----------chhH-----HHHHHHHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 589999999641 1111 1222334457899999 5666777764321 2234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-c----------cc-----c----
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-F----------QT-----E---- 648 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-~----------~~-----~---- 648 (751)
++.+ +..+++++||||||.+|+.++.++|+.++++|++++.......... + .. .
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5443 3468999999999999999999999999999988875432100000 0 00 0
Q ss_pred -cccch--------------------------hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 649 -FRTLW--------------------------EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 649 -~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
....| .....+...+....+.++++|+|+++|++|..+| +..++++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00000 0000111122234566789999999999999998 888887776653
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..++++++++||.+. .+....+.+.+.+||+
T Consensus 226 ----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 ----NAQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred ----CceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 357889999999976 5677788889999985
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=146.18 Aligned_cols=181 Identities=20% Similarity=0.167 Sum_probs=121.0
Q ss_pred EEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004475 515 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593 (751)
Q Consensus 515 vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~ 593 (751)
||++|||||..++... ....+..+++ +|++|+.++|+-. +....+..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~~------------~~~~~~~la~~~g~~v~~~~Yrl~--------p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES------------HWPFAARLAAERGFVVVSIDYRLA--------PEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTTT------------HHHHHHHHHHHHTSEEEEEE---T--------TTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChHH------------HHHHHHHHHhhccEEEEEeecccc--------ccccccccccccccceeeec
Confidence 7999999986543321 1244556665 8999999777532 12234677999999999999
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCC-CCCccCcc----cccccchh--h----
Q 004475 594 RR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNK-TLTPFGFQ----TEFRTLWE--A---- 655 (751)
Q Consensus 594 ~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~d~-~~~~~~~~----~~~~~~~~--~---- 655 (751)
++ ..+|+++|+|+|+|.||++|+.++....+ .++++++++|..|. ........ ......+. .
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 34788999999999999999999975432 48999999998775 21111110 00000110 0
Q ss_pred HHHHH--------hcCcccccCCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 656 TNVYI--------EMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 656 ~~~~~--------~~~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
...+. ..+|+.. ..+ -+|+++++|+.|.+ ..++..++++|++.|++++++++++..|.|.
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 01111 2234433 122 36899999999987 5678999999999999999999999999874
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=142.97 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=143.8
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+.++. ++..+.++++.|.+. ..+.||++|||+... .+. + .....++..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~------~~~~vv~i~gg~~~~-------~g~---~-~~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS------HTTGVLIVVGGPQYR-------VGS---H-RQFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC------CCCeEEEEeCCcccc-------CCc---h-hHHHHHHHHHHHCCCEEEE--
Confidence 4577764 567899999999652 135677777753100 000 0 0112346678889999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 562 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 562 ~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
++.+|+|.+...........+|+.++++++++... ..++|+++|||+||.+++.++... .+++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 66678887754433456678999999999987521 235799999999999999887664 689999999987542110
Q ss_pred ccC--c----c--cccccchhh-----------HHHHHh----c---Cc-----------ccccCCCCCCEEEEEcCCCC
Q 004475 642 PFG--F----Q--TEFRTLWEA-----------TNVYIE----M---SP-----------ITHANKIKKPILIIHGEVDD 684 (751)
Q Consensus 642 ~~~--~----~--~~~~~~~~~-----------~~~~~~----~---~~-----------~~~~~~~~~P~li~~G~~D~ 684 (751)
... . . ......|.. ...+.. . .. ...+.++++|+|+++|+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 0 0 000011110 000110 1 00 12244678999999999998
Q ss_pred CCCCChHHH-----HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 685 KVGLFPMQA-----ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 685 ~vp~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+ .... ....+.+.. ..+++.++++++|.+.......++...+.+||+
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 643 1110 122222221 467899999999988767777889999999995
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=145.72 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=134.8
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
....+.+...+|..+.-.+. ..+ ....|.||++||.+. ....| ......|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~y~-~~G-----~~~~~~lvliHG~~~--------------~~~~w-~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMHYV-DEG-----PADGPPVLLLHGEPS--------------WSYLY-RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEEEE-ecC-----CCCCCEEEEECCCCC--------------chhhH-HHHHHHHHhCCCEEEE
Confidence 45556666545554332222 222 001478999999531 01111 1334456678999999
Q ss_pred cCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 560 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+.+|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+|+.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6677888774321 12345555555555443 3358999999999999999999999999999988763
Q ss_pred CCCCCC--c-----cCc---ccc----------cccch---hhHHHH----------------Hhc---C----------
Q 004475 636 YNKTLT--P-----FGF---QTE----------FRTLW---EATNVY----------------IEM---S---------- 663 (751)
Q Consensus 636 ~d~~~~--~-----~~~---~~~----------~~~~~---~~~~~~----------------~~~---~---------- 663 (751)
...... . +.. ... ....+ .....+ ... .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 211000 0 000 000 00000 000000 000 0
Q ss_pred -cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 664 -PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 664 -~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
....+.++++|+|+++|++|+.+| ... +.+.+.+... ..+.+.++++++|... .+..+.+...+.+||+.+
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 012346789999999999999998 554 6666655432 1234789999999976 677788999999999764
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=150.35 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=145.6
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..++..+...+|..+...++.+..... ....|+||++||.+ ++.. ..+.......+.++||.|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~-----------g~s~--~~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLT-----------GGSD--DSYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCC-----------CCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 334445556677777665554322111 11368999999953 1111 11111234456789999999
Q ss_pred cCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCC
Q 004475 560 GPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGS 635 (751)
Q Consensus 560 ~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~ 635 (751)
.+.+|+|.+.. ...+.....+|+.++++++..+. ...++.++||||||.+++.++.++|+. +.+++++++.
T Consensus 135 ---~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p 209 (388)
T PLN02511 135 ---FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNP 209 (388)
T ss_pred ---EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCC
Confidence 56667777642 22233456789999999998763 235899999999999999999999876 7888877765
Q ss_pred CCCCCCc----cC--------cc---------cc---------c--------ccc--h-----------hh-HHHHHhcC
Q 004475 636 YNKTLTP----FG--------FQ---------TE---------F--------RTL--W-----------EA-TNVYIEMS 663 (751)
Q Consensus 636 ~d~~~~~----~~--------~~---------~~---------~--------~~~--~-----------~~-~~~~~~~~ 663 (751)
.+..... .. +. .. . ... + .. .+.|...+
T Consensus 210 ~~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s 289 (388)
T PLN02511 210 FDLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSS 289 (388)
T ss_pred cCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcC
Confidence 5421000 00 00 00 0 000 0 00 01223344
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH-----HHHHHHHHHHHHH
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV-----MHVIWETDRWLQK 738 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-----~~~~~~~~~fl~~ 738 (751)
....+.++++|+|+++|++|+++| ...... .+......+++++++++||........ .-..+.+.+||..
T Consensus 290 ~~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 290 SSDSIKHVRVPLLCIQAANDPIAP--ARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred chhhhccCCCCeEEEEcCCCCcCC--cccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 555678899999999999999998 543211 122233568999999999976532211 1246778899987
Q ss_pred HhcC
Q 004475 739 YCLS 742 (751)
Q Consensus 739 ~l~~ 742 (751)
....
T Consensus 365 ~~~~ 368 (388)
T PLN02511 365 LEEG 368 (388)
T ss_pred HHHh
Confidence 7653
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=134.23 Aligned_cols=127 Identities=25% Similarity=0.234 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+.+.++.+.++..+|.+|++++|+|.||++++.+..++|+.++++|+++|..-.....
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~------------------- 140 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPEL------------------- 140 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCcc-------------------
Confidence 4555566666666777999999999999999999999999999999999999975432110
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
....-.+|+|++||+.|++|| ...+.++.+.|++.|.+++++.++ .||.+.. +.++.+.+|+...+
T Consensus 141 -----~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 141 -----LPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred -----ccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 011235899999999999999 999999999999999999999999 7899853 56677788887654
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=131.55 Aligned_cols=145 Identities=26% Similarity=0.311 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004475 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593 (751)
Q Consensus 514 ~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~ 593 (751)
+||++||.+. +... ....+..|+++||.|+.+ ++++.+.+ ....++.++++++.
T Consensus 1 ~vv~~HG~~~-----------~~~~----~~~~~~~l~~~G~~v~~~---~~~~~~~~--------~~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGG-----------SRRD----YQPLAEALAEQGYAVVAF---DYPGHGDS--------DGADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTT-----------TTHH----HHHHHHHHHHTTEEEEEE---SCTTSTTS--------HHSHHHHHHHHHHH
T ss_pred CEEEECCCCC-----------CHHH----HHHHHHHHHHCCCEEEEE---ecCCCCcc--------chhHHHHHHHHHHH
Confidence 5899999742 1111 125677889999999994 44555543 12235556666654
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCC
Q 004475 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK 673 (751)
Q Consensus 594 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (751)
+... +.++|+++|||+||.+++.++.++ ..++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 3222 789999999999999999999998 78999999999310 012445678
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
|+|+++|++|..+| .++.++++++++ .+.+++++++++|.
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999988886 56899999999995
|
... |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=132.64 Aligned_cols=199 Identities=17% Similarity=0.190 Sum_probs=133.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch----hHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR----FVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~~~~~~~d~~~ 587 (751)
.|+|+++||-+ ..++.|. .+...|+++||.|++ .|.+|+|.+..+.. ....+..|+..
T Consensus 44 gP~illlHGfP--------------e~wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFP--------------ESWYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCC--------------ccchhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 69999999943 5555554 344578899999999 78889998866544 24456777777
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC-CCCCc-----------c---Ccc-----c
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-KTLTP-----------F---GFQ-----T 647 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d-~~~~~-----------~---~~~-----~ 647 (751)
.++.|. -+|+.++||+|||.+|+.++..+|+++.+.|+.+.... ....+ + .+. .
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777774 36899999999999999999999999999998875432 00000 0 000 0
Q ss_pred ------------------------------ccccch---hhHHH-------------------HHhcCc--ccccCCCCC
Q 004475 648 ------------------------------EFRTLW---EATNV-------------------YIEMSP--ITHANKIKK 673 (751)
Q Consensus 648 ------------------------------~~~~~~---~~~~~-------------------~~~~~~--~~~~~~~~~ 673 (751)
.....| ++.+. +..+.+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000011 11111 111111 223457889
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|++++.|+.|.+.+ ...-.+.+++.-. ...+.++++++||... .+..+++.+.++.||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp--~l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVP--RLTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhc--cccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 99999999999988 4432333333221 1236788999999887 677889999999999875
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=145.72 Aligned_cols=198 Identities=12% Similarity=0.025 Sum_probs=124.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 588 (751)
.|.||++||.+.. ...+..+ ......+++.||.|++ ++.+|+|.+..... ......+|+.++
T Consensus 30 ~~~ivllHG~~~~-----------~~~~~~~-~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 30 GEAVIMLHGGGPG-----------AGGWSNY-YRNIGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred CCeEEEECCCCCc-----------hhhHHHH-HHHHHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 3679999996411 0111110 0123456678999999 56677877754311 111234444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--CCccC------------cc--------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT--LTPFG------------FQ-------- 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~--~~~~~------------~~-------- 646 (751)
++.+ +.++++++||||||.+++.++.++|++++++|++++..... ..... ..
T Consensus 95 l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 95 MDAL------DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHHc------CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHH
Confidence 4443 45689999999999999999999999999999988642100 00000 00
Q ss_pred ------cccc-------cchh----hHH---HHHh---------cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 647 ------TEFR-------TLWE----ATN---VYIE---------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 647 ------~~~~-------~~~~----~~~---~~~~---------~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
.... ..|. .+. .+.. ......+.++++|+|+++|++|..+| +..++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~ 246 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLL 246 (282)
T ss_pred HhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHH
Confidence 0000 0000 000 0000 00112356789999999999999998 78877777
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.++ ++++++++++||... .+....+.+.+.+||.
T Consensus 247 ~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 247 WNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred HhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 6653 568999999999976 6777888899999985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=134.84 Aligned_cols=268 Identities=12% Similarity=0.033 Sum_probs=159.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|+++|+.+ ++..+... ........+|+|||+.++.+. .....|+++++.+++..+......
T Consensus 11 ~~v~~~d~~t----~~~~~~~~--~~~~~~~l~~~~dg~~l~~~~---------~~~~~v~~~d~~~~~~~~~~~~~~-- 73 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRTFP--VGQRPRGITLSKDGKLLYVCA---------SDSDTIQVIDLATGEVIGTLPSGP-- 73 (300)
T ss_pred CEEEEEECCC----CceEEEEE--CCCCCCceEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEeccCCC--
Confidence 4789999988 77655432 223466799999999876643 334679999998887654322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....++|+|||+.|+..... ...|+++|+
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~ 102 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANED------------------------------------------------DNLVTVIDI 102 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEEC
Confidence 13567899999988765221 036788888
Q ss_pred -CCC-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 -DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 -~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+++ ...+........++|+|||+.+++..... ..++.++..+++....... ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~-------------~~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLV-------------DQ 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEc-------------CC
Confidence 443 22332223356789999999998865431 2355677766543221110 01
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-------ceeEE-EEEecCCceEEE
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~spdg~~l~~ 314 (751)
..+.+.|+|||+. +++... ..+.+++++++. +.....+... ..... +.|+|||+.++.
T Consensus 158 ~~~~~~~s~dg~~-l~~~~~-----------~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVSSE-----------IGGTVSVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CccEEEECCCCCE-EEEEcC-----------CCCEEEEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 2346899999998 555321 124688888751 2222222211 11123 689999998655
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
... ...++.+++..++ +........ ..... ++|+|||++|+.... ...
T Consensus 224 ~~~---~~~~i~v~d~~~~--~~~~~~~~~-~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALG---PANRVAVVDAKTY--EVLDYLLVG-QRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcC---CCCeEEEEECCCC--cEEEEEEeC-CCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 432 1236778888764 222211111 11222 789999999877541 233
Q ss_pred eeEEEecCCCceeEEee
Q 004475 395 FLDLFDINTGSKERIWE 411 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l~~ 411 (751)
.|.+||+.+++...-+.
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 79999999887644433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=125.08 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=174.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+||+++|++ ++|+...+..+......+..+|+|+++.|+.+...+ ..++...|-+|.++|+...+-......
T Consensus 17 gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~~~g- 88 (346)
T COG2706 17 GIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQTLPG- 88 (346)
T ss_pred ceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecC-----CcCcEEEEEEcCCCCeEEEeeccccCC-
Confidence 899999987 677777665444444678889999998887665321 155677788887778877774332211
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
+ ....++.++||++|+......... .++-+..+
T Consensus 89 ~-~p~yvsvd~~g~~vf~AnY~~g~v----------------------------------------------~v~p~~~d 121 (346)
T COG2706 89 S-PPCYVSVDEDGRFVFVANYHSGSV----------------------------------------------SVYPLQAD 121 (346)
T ss_pred C-CCeEEEECCCCCEEEEEEccCceE----------------------------------------------EEEEcccC
Confidence 1 124668899999888775542111 11111112
Q ss_pred CCc----------------eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC
Q 004475 166 GTA----------------KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (751)
Q Consensus 166 G~~----------------~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (751)
|.+ ++-+ .......++|||++|++.... ..++++|+++.+.+........
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~--~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQES--PHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred CccccceeeeecCCCCCCccccC--CccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc
Confidence 311 1111 235678899999999887544 3468889888665544333222
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---------ecee
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------LDLR 300 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---------~~~~ 300 (751)
....|.|.+.|+|+|+. +|.+... .+.+.++..++. .+..+++.. ....
T Consensus 188 ---------~~G~GPRHi~FHpn~k~-aY~v~EL-----------~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---------KPGAGPRHIVFHPNGKY-AYLVNEL-----------NSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---------CCCCCcceEEEcCCCcE-EEEEecc-----------CCEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence 23457899999999997 5554422 234555544322 223222221 1222
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
.. +..||||+.|+. +++.-....+|.++..++ ....+...+.... .|- .+.++++|+.|+....
T Consensus 246 ~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~--~PR--~F~i~~~g~~Liaa~q-------- 310 (346)
T COG2706 246 AAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGG--KLELVGITPTEGQ--FPR--DFNINPSGRFLIAANQ-------- 310 (346)
T ss_pred eeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCC--EEEEEEEeccCCc--CCc--cceeCCCCCEEEEEcc--------
Confidence 34 889999997754 545444567888888885 2222211111110 011 1668999999888773
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
++++..+++.|-+||+++.+..
T Consensus 311 ----------~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 ----------KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ----------CCCcEEEEEEcCCCceEEeccc
Confidence 2455678888999998876643
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.59 E-value=9e-14 Score=140.27 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=115.8
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
+.++|.|++ ++.+|+|.+.... ...+...+|+.++++.+ +..++.|+||||||.+|+.+|.++|+++++
T Consensus 48 L~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~ 118 (276)
T TIGR02240 48 LDPDLEVIA---FDVPGVGGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKK 118 (276)
T ss_pred hccCceEEE---ECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhh
Confidence 456799999 6777888875432 23456667777766665 235799999999999999999999999999
Q ss_pred EEEccCCCCCCCC-----------c-cCcccc----------cccch-hhHH----------------HHH------hcC
Q 004475 629 GIARSGSYNKTLT-----------P-FGFQTE----------FRTLW-EATN----------------VYI------EMS 663 (751)
Q Consensus 629 ~v~~~~~~d~~~~-----------~-~~~~~~----------~~~~~-~~~~----------------~~~------~~~ 663 (751)
+|+.++....... . ..+... ..... ..++ .+. ...
T Consensus 119 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (276)
T TIGR02240 119 LILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWT 198 (276)
T ss_pred eEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCc
Confidence 9998875421100 0 000000 00000 0000 000 011
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
....+.++++|+|+++|++|..+| +..++++.+.+. ..+++++++ +|... .+....+.+.+.+|+++.-
T Consensus 199 ~~~~l~~i~~P~lii~G~~D~~v~--~~~~~~l~~~~~----~~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 199 SIHWLHKIQQPTLVLAGDDDPIIP--LINMRLLAWRIP----NAELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred hhhHhhcCCCCEEEEEeCCCCcCC--HHHHHHHHHhCC----CCEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhh
Confidence 123357889999999999999998 888877876654 346778875 99876 5677889999999998753
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=141.93 Aligned_cols=228 Identities=18% Similarity=0.113 Sum_probs=136.6
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+...+...+. .+.+.|+||++||.+ ++. ...+...++..|.++||.|++ .++
T Consensus 36 ~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~-----------g~~--~~~~~~~~~~~l~~~G~~v~~---~d~ 95 (324)
T PRK10985 36 LELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLE-----------GSF--NSPYAHGLLEAAQKRGWLGVV---MHF 95 (324)
T ss_pred EECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCC-----------CCC--cCHHHHHHHHHHHHCCCEEEE---EeC
Confidence 344577655444322111 122369999999953 110 111122355678899999999 455
Q ss_pred CCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCCCCCCCC
Q 004475 566 IGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYNKTLT 641 (751)
Q Consensus 566 ~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~~d~~~~ 641 (751)
+|+|.+.. ...+.....+|+..++++++++. ...+++++||||||.+++.+++.+++. +.++|++++.++....
T Consensus 96 rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~ 173 (324)
T PRK10985 96 RGCSGEPNRLHRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEAC 173 (324)
T ss_pred CCCCCCccCCcceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHH
Confidence 56665422 11222234688999999998763 235799999999999888888776543 7888888887552100
Q ss_pred c----------cC-----------------cccc------c----cc-------------ch-hhHHHHHhcCcccccCC
Q 004475 642 P----------FG-----------------FQTE------F----RT-------------LW-EATNVYIEMSPITHANK 670 (751)
Q Consensus 642 ~----------~~-----------------~~~~------~----~~-------------~~-~~~~~~~~~~~~~~~~~ 670 (751)
. +. +... . .. .+ ...+.|...+....+.+
T Consensus 174 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~ 253 (324)
T PRK10985 174 SYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQ 253 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhC
Confidence 0 00 0000 0 00 00 01122334444456788
Q ss_pred CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc----HHHHHHHHHHHHHHHhc
Q 004475 671 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN----VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 671 ~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~----~~~~~~~~~~fl~~~l~ 741 (751)
+++|+|+++|++|++++ ......+. +....+++++++++||....... ..-.-+.+.+||+..+.
T Consensus 254 i~~P~lii~g~~D~~~~--~~~~~~~~----~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 254 IRKPTLIIHAKDDPFMT--HEVIPKPE----SLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred CCCCEEEEecCCCCCCC--hhhChHHH----HhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 89999999999999987 65544432 22345789999999997543221 12344567888876653
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-14 Score=139.74 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~ 590 (751)
.|+||++||.+. +...+ ...... +.++|.|++ .+.+|+|.+.... ....+..+|+.++++
T Consensus 16 ~~~iv~lhG~~~-----------~~~~~----~~~~~~-l~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFG-----------SLDNL----GVLARD-LVNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCC-----------chhHH----HHHHHH-HhhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 588999999531 11111 122233 346799999 5666777665432 235566777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC-CCCCCCc-------------cCcccc-c------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YNKTLTP-------------FGFQTE-F------ 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~-~d~~~~~-------------~~~~~~-~------ 649 (751)
++ ...++.++||||||.+|+.++.++|++++++|++++. ....... ...... .
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 2357999999999999999999999999999987532 1110000 000000 0
Q ss_pred ----c-------------cchh--hH---HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 004475 650 ----R-------------TLWE--AT---NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALS 707 (751)
Q Consensus 650 ----~-------------~~~~--~~---~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~ 707 (751)
. ..|. .+ ..+........+.++++|+|+++|++|..++ ....+.+.+.+ ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~----~~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQF----PQA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhC----CCc
Confidence 0 0000 00 0111111122345678999999999999987 66665555444 356
Q ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 708 RLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 708 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++.++++++|... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8899999999765 56678899999999975
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=140.98 Aligned_cols=194 Identities=20% Similarity=0.165 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. ....|. ..... ++++|.|++ ++.+|+|.+.... .......+|+.++
T Consensus 28 ~~~vv~~hG~~~-----------~~~~~~----~~~~~-l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 28 GPLLLLLHGTGA-----------STHSWR----DLMPP-LARSFRVVA---PDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred CCeEEEEcCCCC-----------CHHHHH----HHHHH-HhhCcEEEe---ecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 478999999531 111111 22233 456799999 5666777764322 2344555555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------ccC--------c---------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------PFG--------F--------- 645 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~------~~~--------~--------- 645 (751)
++.+ +..+++++||||||.+++.++.+.|++++++|+.++....... +.. .
T Consensus 89 i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (278)
T TIGR03056 89 CAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGA 162 (278)
T ss_pred HHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhc
Confidence 4432 2357899999999999999999999989988888765331100 000 0
Q ss_pred cccc---------ccchh--hHHHHH-----------------hcC---cccccCCCCCCEEEEEcCCCCCCCCChHHHH
Q 004475 646 QTEF---------RTLWE--ATNVYI-----------------EMS---PITHANKIKKPILIIHGEVDDKVGLFPMQAE 694 (751)
Q Consensus 646 ~~~~---------~~~~~--~~~~~~-----------------~~~---~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~ 694 (751)
.... ...+. ....+. ... ....+.++++|+|+++|++|..+| ...++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp--~~~~~ 240 (278)
T TIGR03056 163 ADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVP--PDESK 240 (278)
T ss_pred ccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccC--HHHHH
Confidence 0000 00000 000000 000 112356788999999999999998 77777
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.+.+. .+++.++++++|.+. .+....+.+.+.+||+
T Consensus 241 ~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 241 RAATRVP----TATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred HHHHhcc----CCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 7665543 357899999999876 5667888999999873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=145.50 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=134.7
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH---hCCeEEEEc
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAG 560 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~v~~~ 560 (751)
..+...++..+......|++. ...|.||++||.+.. ...|.......|. .++|.|++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s--------------~~~W~~~~~~~L~~~~~~~yrVia- 237 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISS--------------SAFWTETLFPNFSDAAKSTYRLFA- 237 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCcc--------------HHHHHHHHHHHHHHHhhCCCEEEE-
Confidence 345555667788888887651 124789999996411 1111111112333 47999999
Q ss_pred CCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 561 PSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
.+.+|+|.+..... ...+..+++. ..+.+. .+..++.++||||||.+++.++.++|++++++|++++...
T Consensus 238 --~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 238 --VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred --ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 66678887654321 1233334332 122222 1346899999999999999999999999999999886432
Q ss_pred CCCCc-------------cCc-cc----cc---------c----------cchhhH----------HHHH----hc--Cc
Q 004475 638 KTLTP-------------FGF-QT----EF---------R----------TLWEAT----------NVYI----EM--SP 664 (751)
Q Consensus 638 ~~~~~-------------~~~-~~----~~---------~----------~~~~~~----------~~~~----~~--~~ 664 (751)
..... ... .. .. . ..|... ..+. .. ..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 390 (481)
T PLN03087 311 PVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNA 390 (481)
T ss_pred ccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchh
Confidence 11000 000 00 00 0 001100 0000 00 00
Q ss_pred c--------------------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 665 I--------------------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 665 ~--------------------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
. ....++++|+|+++|++|..+| +..++.+.+.++ .+++++++++||.....+.
T Consensus 391 ~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~ 464 (481)
T PLN03087 391 AWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVP----RARVKVIDDKDHITIVVGR 464 (481)
T ss_pred hHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCC----CCEEEEeCCCCCcchhhcC
Confidence 0 0112588999999999999998 888888776664 4589999999999764466
Q ss_pred HHHHHHHHHHHHHH
Q 004475 725 VMHVIWETDRWLQK 738 (751)
Q Consensus 725 ~~~~~~~~~~fl~~ 738 (751)
...+...+.+|...
T Consensus 465 p~~fa~~L~~F~~~ 478 (481)
T PLN03087 465 QKEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHHhhc
Confidence 77888888888753
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=142.46 Aligned_cols=193 Identities=18% Similarity=0.201 Sum_probs=121.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v 589 (751)
.|+||++||.|. ....+ ......+.+||.|++ .+.+|+|.+.... ....+..+|+.+.+
T Consensus 13 ~~~li~~hg~~~--------------~~~~~--~~~~~~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGT--------------DLRMW--DPVLPALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCccc--------------chhhH--HHHHHHhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999541 11111 122233457999999 5566777653322 23445556555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-cc----------Ccc------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PF----------GFQ------------ 646 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~----------~~~------------ 646 (751)
+.+ +.+++.++|||+||.+++.+|.++|++++++++.++....... .+ ...
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 543 3468999999999999999999999999998887764321110 00 000
Q ss_pred cccc--c-----chh------hH-------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 647 TEFR--T-----LWE------AT-------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 647 ~~~~--~-----~~~------~~-------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
.... . .+. .. ..+........+.++++|+|+++|++|..+| ......+.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000 0 000 00 0011112223456788999999999999998 777776665553 3
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+++++++++|... .+..+.+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 57899999999876 456777888888886
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=139.51 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---------hhHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVS 583 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~ 583 (751)
|.||++||.+.. ...| . .....|+.+ |.|++ ++.+|+|.+.... ....+..+
T Consensus 30 ~~vlllHG~~~~-----------~~~w---~-~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGN-----------ADHW---R-KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCC-----------hhHH---H-HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 689999996411 1111 1 234455555 68998 6677888775421 22455566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---CCc-cCc------c---cc--
Q 004475 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---LTP-FGF------Q---TE-- 648 (751)
Q Consensus 584 d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---~~~-~~~------~---~~-- 648 (751)
|+.+.++.+ . .+++.++||||||.+++.++.++|++++++|++++..... ... ... . ..
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 666666544 2 3689999999999999999999999999999988743110 000 000 0 00
Q ss_pred --------c------ccc----hhh--------H-------------HHHHhc---C----cccccCCCCCCEEEEEcCC
Q 004475 649 --------F------RTL----WEA--------T-------------NVYIEM---S----PITHANKIKKPILIIHGEV 682 (751)
Q Consensus 649 --------~------~~~----~~~--------~-------------~~~~~~---~----~~~~~~~~~~P~li~~G~~ 682 (751)
. ... +.. . ..+... . ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 000000 0 1123567899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
|..+| ...++.+.+ .....+++++++++|... .+....+...+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~----~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYAN----FDAVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHh----cCCccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 776655433 223357999999999876 677888999999999753
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=142.32 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=135.8
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
||.+|.+.+|+| +.. ..+++|+||..|+.+.... ..................|+++||+|+. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~--~~~~~P~il~~tpY~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD--GGGPFPVILTRTPYGKGDQ-----TASDLAGANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---T--TSSSEEEEEEEESSTCTC------HHHHHHTTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCC--CCCcccEEEEccCcCCCCC-----cccchhhhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 578999999999 211 2457999999999752110 0000000000000111238999999999 5666777
Q ss_pred CCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c--cCc
Q 004475 570 DKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P--FGF 645 (751)
Q Consensus 570 ~~~~~~~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~--~~~ 645 (751)
.|...... .....+|..++|+|+.++++.+ .||+++|.|++|..++.+|+..|..++|++...+..|.... . -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77654444 6778999999999999997755 69999999999999999999888899999999887764431 0 000
Q ss_pred ccc-cccch---------------------h-------------------------------hHHHHHhcCcccccCCCC
Q 004475 646 QTE-FRTLW---------------------E-------------------------------ATNVYIEMSPITHANKIK 672 (751)
Q Consensus 646 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~~~~~~~~~~~ 672 (751)
... ....| . ..+.+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00000 0 011223334444568899
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCc
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHV 718 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 718 (751)
+|+|+++|-.|... ...+.+.+++|+..+ ++.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999665 478899999999887 6778888886 474
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=127.31 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=156.3
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
....|+++++++++..+...... .+..++|+|||+.++.....
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~-----~~~~l~~~~dg~~l~~~~~~-------------------------------- 51 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ-----RPRGITLSKDGKLLYVCASD-------------------------------- 51 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC-----CCCceEECCCCCEEEEEECC--------------------------------
Confidence 34688999998887655443322 24568999999987665321
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
...|+++++ +|+.. .+........++|+|||+.+++.... ...+.+||+.
T Consensus 52 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~ 103 (300)
T TIGR03866 52 ----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIE 103 (300)
T ss_pred ----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECC
Confidence 046788888 56443 34333445678899999988776432 2368899998
Q ss_pred CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee
Q 004475 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (751)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (751)
+.+....... ...+..+.|+|||+. ++.... ....++.++.+ +.........
T Consensus 104 ~~~~~~~~~~-------------~~~~~~~~~~~dg~~-l~~~~~-----------~~~~~~~~d~~---~~~~~~~~~~ 155 (300)
T TIGR03866 104 TRKVLAEIPV-------------GVEPEGMAVSPDGKI-VVNTSE-----------TTNMAHFIDTK---TYEIVDNVLV 155 (300)
T ss_pred CCeEEeEeeC-------------CCCcceEEECCCCCE-EEEEec-----------CCCeEEEEeCC---CCeEEEEEEc
Confidence 6543211110 011346899999998 555431 11234555653 2222111111
Q ss_pred ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCC-CCeeeCCCCCEEEEeeeecCC
Q 004475 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~spDG~~l~~~~~~~~~ 375 (751)
..... +.|+|||+.|+++.. ....|+++++.++ ...+.+... .......... ..++|+|||+.++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~~~~~---- 226 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATR-KVIKKITFE-IPGVHPEAVQPVGIKLTKDGKTAFVALG---- 226 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcc-eeeeeeeec-ccccccccCCccceEECCCCCEEEEEcC----
Confidence 22234 789999998877542 2246888888774 111222211 1000000001 12679999998765441
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEE
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 455 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~ 455 (751)
....|.+||+.+++......... ....++|+|||+.|+.... .-+.|.+
T Consensus 227 ----------------~~~~i~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 227 ----------------PANRVAVVDAKTYEVLDYLLVGQ------------RVWQLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred ----------------CCCeEEEEECCCCcEEEEEEeCC------------CcceEEECCCCCEEEEEcC---CCCeEEE
Confidence 12368899998877654322211 1123589999998875532 1346999
Q ss_pred EEcCCCce
Q 004475 456 LSWPLKKS 463 (751)
Q Consensus 456 ~~~~~g~~ 463 (751)
+|+.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99998775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=135.17 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
-+||++||.+. + ...|. .....|.+.||.|++ .+.+|+|.+.... ...++..+|+.+++
T Consensus 4 ~~vvllHG~~~-----------~---~~~w~-~~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (255)
T PLN02965 4 IHFVFVHGASH-----------G---AWCWY-KLATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALL 65 (255)
T ss_pred eEEEEECCCCC-----------C---cCcHH-HHHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHH
Confidence 35999999641 1 11111 234456688999999 6777888775321 23456667677776
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC---CCCCC------------ccCc--ccccccc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY---NKTLT------------PFGF--QTEFRTL 652 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~---d~~~~------------~~~~--~~~~~~~ 652 (751)
+.+. + ..++.++||||||.+++.++.++|++++++|+.++.. ..... .+.. .......
T Consensus 66 ~~l~----~-~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
T PLN02965 66 SDLP----P-DHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKP 140 (255)
T ss_pred HhcC----C-CCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCC
Confidence 6541 1 1489999999999999999999999999999887641 10000 0000 0000000
Q ss_pred ----h---hhH-HHH-------------Hh--cCcc----------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 653 ----W---EAT-NVY-------------IE--MSPI----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 653 ----~---~~~-~~~-------------~~--~~~~----------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
. ... ..+ .. ..+. ..+.++++|+|+++|++|..+| +..++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~ 218 (255)
T PLN02965 141 PTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVEN 218 (255)
T ss_pred cchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHh
Confidence 0 000 000 00 0000 1233689999999999999998 8777777665
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+. ..++++++++||... .+..+.+...+.+|+++
T Consensus 219 ~~----~a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 219 WP----PAQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSS 252 (255)
T ss_pred CC----cceEEEecCCCCchh-hcCHHHHHHHHHHHHHH
Confidence 54 347899999999987 67788888888888765
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-13 Score=133.71 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=131.8
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
..+.+.+++|.. .+++|+||++||.+.. ..+.......|+++||.|++++.++.. ..
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~---~~ 93 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLA---GP 93 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcC---CC
Confidence 468999999975 3468999999996421 111224566788999999996654422 11
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 638 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~ 638 (751)
. . ...++++.++++|+.+. ..+|.++++++|||+||.+|+.++...++ +++++|++.|+...
T Consensus 94 ~----~-~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 94 D----G-TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred C----c-hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 1 1 22345666777777652 23677899999999999999999998864 57889988886432
Q ss_pred CCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCC---------CCCCChHHHHHHHHHHHhCCCcEEE
Q 004475 639 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDD---------KVGLFPMQAERFFDALKGHGALSRL 709 (751)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~---------~vp~~~~~~~~~~~~l~~~~~~~~~ 709 (751)
.... ...++ .+ .+. ...-++..|+|++++..|. ..| +..+-.++++.++ .+..+
T Consensus 169 ~~~~------~~~p~----il-~~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap-~~~~~~~f~~~~~---~~~~~ 231 (313)
T PLN00021 169 SKGK------QTPPP----VL-TYA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAP-DGVNHAEFFNECK---APAVH 231 (313)
T ss_pred cccc------CCCCc----cc-ccC--cccccCCCCeEEEecCCCcccccccccccCC-CCCCHHHHHHhcC---CCeee
Confidence 2110 00000 00 000 1122367999999999763 122 1233466776554 46688
Q ss_pred EEeCCCCCcCCcccc----------------------HHHHHHHHHHHHHHHhcCCC
Q 004475 710 VLLPFEHHVYAAREN----------------------VMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 710 ~~~~~~~H~~~~~~~----------------------~~~~~~~~~~fl~~~l~~~~ 744 (751)
.+.++++|.-...+. ++.....++.||..++....
T Consensus 232 ~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 232 FVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 888999996431111 22344568999999886543
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=143.38 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=122.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. ....|. .....| ..+|.|++ ++.+|+|.+.... .......+++.+.
T Consensus 88 gp~lvllHG~~~--------------~~~~w~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGA--------------SIPHWR-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCC--------------CHHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 378999999641 111111 122333 45899999 6677888775432 1234455555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCC----CccCc----------------c-
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTL----TPFGF----------------Q- 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~d~~~----~~~~~----------------~- 646 (751)
++.+ ...++.|+||||||.+++.+++ ++|++++++|++++...... ..+.. .
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5533 2368999999999999998887 46899999999886421100 00000 0
Q ss_pred ------cc---cccc-------h--------hh-------------HHHHHh-------cCcccccCCCCCCEEEEEcCC
Q 004475 647 ------TE---FRTL-------W--------EA-------------TNVYIE-------MSPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 647 ------~~---~~~~-------~--------~~-------------~~~~~~-------~~~~~~~~~~~~P~li~~G~~ 682 (751)
.. .... + .. ...+.. ......+.++++|+|+++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 00 0000 0 00 000000 011123567899999999999
Q ss_pred CCCCCCChHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQA-ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 683 D~~vp~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|..+| +... .++++.+.+.-.++++++++++||... .+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99998 5532 234445544435679999999999876 67788999999999975
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=129.25 Aligned_cols=188 Identities=22% Similarity=0.215 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCC---CCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI---IGEGD 570 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~---~g~g~ 570 (751)
...+|+|+... +++.|+||++||++... ..+... .....++ ++||+|+.|..... .++-.
T Consensus 2 ~Y~lYvP~~~~---~~~~PLVv~LHG~~~~a-----------~~~~~~--s~~~~lAd~~GfivvyP~~~~~~~~~~cw~ 65 (220)
T PF10503_consen 2 SYRLYVPPGAP---RGPVPLVVVLHGCGQSA-----------EDFAAG--SGWNALADREGFIVVYPEQSRRANPQGCWN 65 (220)
T ss_pred cEEEecCCCCC---CCCCCEEEEeCCCCCCH-----------HHHHhh--cCHHHHhhcCCeEEEcccccccCCCCCccc
Confidence 56889998643 23589999999975321 222211 1122345 47999998654211 01100
Q ss_pred CC-CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-ccC-ccc
Q 004475 571 KL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PFG-FQT 647 (751)
Q Consensus 571 ~~-~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~~-~~~ 647 (751)
-. ............+..+++++.++..||++||++.|+|.||.|+..++..+|+.|+++...++...-... ... +..
T Consensus 66 w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~ 145 (220)
T PF10503_consen 66 WFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSA 145 (220)
T ss_pred ccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHH
Confidence 00 001111223456778899999999999999999999999999999999999999999998886321100 000 000
Q ss_pred ccccchhhHHHH-HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 648 EFRTLWEATNVY-IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 648 ~~~~~~~~~~~~-~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
...-.-..+... ....... ..-..|++++||+.|..|. +.++.++.+++..
T Consensus 146 m~~g~~~~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 146 MRSGPRPAPAAAWGARSDAG--AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLN 197 (220)
T ss_pred hhCCCCCChHHHHHhhhhcc--CCCCCCEEEEecCCCCccC--cchHHHHHHHHHH
Confidence 000000001100 0000000 0113699999999999998 8888888888765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-12 Score=115.16 Aligned_cols=275 Identities=13% Similarity=0.132 Sum_probs=186.5
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...|..|.+.+ |.=..-...+++ .+....+.||++.||- .+..+|.++|+.++.+.++...+
T Consensus 17 ~YDhTIRfWqa~t----G~C~rTiqh~ds-qVNrLeiTpdk~~LAa-----------a~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 17 GYDHTIRFWQALT----GICSRTIQHPDS-QVNRLEITPDKKDLAA-----------AGNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred cCcceeeeeehhc----CeEEEEEecCcc-ceeeEEEcCCcchhhh-----------ccCCeeEEEEccCCCCCceeEEe
Confidence 6788899999999 887765545665 5889999999999999 56689999999999887775544
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+. ..+..+.|--||++++..+++ +.+.+
T Consensus 81 ~h~--kNVtaVgF~~dgrWMyTgseD-------------------------------------------------gt~kI 109 (311)
T KOG0315|consen 81 GHT--KNVTAVGFQCDGRWMYTGSED-------------------------------------------------GTVKI 109 (311)
T ss_pred ccC--CceEEEEEeecCeEEEecCCC-------------------------------------------------ceEEE
Confidence 431 246788999999999987543 34555
Q ss_pred EcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +=..+++-.. ..+..+...|.-..|+.... ...|++||+....- .++.+
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liP------------ 164 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIP------------ 164 (311)
T ss_pred EeccCcccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCC------------
Confidence 566 3344455444 66778889998888876422 34699999976532 22211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC-CCceEeE---eeceeEE-EEEecCCceEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILH---KLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~---~~~~~~~-~~~spdg~~l~ 313 (751)
.....++.++..|||+. ++.+. .++..|++++-...+ ....++. ..++.+. ..+|||+++|+
T Consensus 165 e~~~~i~sl~v~~dgsm-l~a~n------------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSM-LAAAN------------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred CCCcceeeEEEcCCCcE-EEEec------------CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 11234668899999998 55543 567899988732111 1223333 3445555 78999999998
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
..+. ..++++.+.++- .............+|. -+||.||.+|+..+.+
T Consensus 232 t~ss----dktv~iwn~~~~-~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd--------------------- 279 (311)
T KOG0315|consen 232 TCSS----DKTVKIWNTDDF-FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD--------------------- 279 (311)
T ss_pred eecC----CceEEEEecCCc-eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------
Confidence 7662 235566666553 2223334444456665 6799999999888743
Q ss_pred ceeEEEecCCCceeEEeecc
Q 004475 394 PFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 394 ~~l~~~d~~~g~~~~l~~~~ 413 (751)
....+|++..++..+.+...
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred CceeecccccCceeeecCCc
Confidence 26778899988877776543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-12 Score=123.97 Aligned_cols=290 Identities=17% Similarity=0.139 Sum_probs=144.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..|+|++||.+ ++.+|||..+.. ......+||+++.|+|+. ...+|+.+++++.+.+.|...+..
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~----------~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGD-NTFGGFLSPDDRALYYVK----------NGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEE----------TTTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCC-CccceEEecCCCeEEEEE----------CCCeEEEEECCcCcEEEEEECCcc
Confidence 46999999999 999999965443 344789999999999974 336899999999999988776653
Q ss_pred cccceeeeeEEe--cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~~~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
....-.|+ .|+..++..... +.. .....++......+.......|+.
T Consensus 124 ----~~g~gt~v~n~d~t~~~g~e~~-~~d--------------------------~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 ----WKGYGTWVANSDCTKLVGIEIS-RED--------------------------WKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ----EEEEEEEEE-TTSSEEEEEEEE-GGG-------------------------------SHHHHHHHHHC---EEEEE
T ss_pred ----cccccceeeCCCccEEEEEEEe-ehh--------------------------ccCccccHHHHHHHhhCCCceEEE
Confidence 22345675 457666555221 000 000000111111111124478999
Q ss_pred EcC-CCCceecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+++ +|+.+.+... ..+.=+.+|| |...|.| ..+.+ .......||+++.+++..+.+....-.
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f-CHEGp------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-------- 237 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF-CHEGP------WDLVDQRIWTINTDGSNVKKVHRRMEG-------- 237 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEE-EE-S-------TTTSS-SEEEEETTS---EESS---TT--------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEE-eccCC------cceeceEEEEEEcCCCcceeeecCCCC--------
Confidence 999 8887777554 5566677788 5556666 44433 222345799999999888777443211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
..+..=-|+|||+. |+|.....++. ..-|+-++++ ....+.+...+. .. +.-++||+.++--..
T Consensus 238 ---e~~gHEfw~~DG~~-i~y~~~~~~~~-------~~~i~~~d~~---t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 238 ---ESVGHEFWVPDGST-IWYDSYTPGGQ-------DFWIAGYDPD---TGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ---EEEEEEEE-TTSS--EEEEEEETTT---------EEEEEE-TT---T--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred ---cccccccccCCCCE-EEEEeecCCCC-------ceEEEeeCCC---CCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 12234489999999 77755332211 1245556654 334455555443 44 677899997653221
Q ss_pred ecc------------cceeEEEecCCCCCCcceeeeecccccc--cC--CCCCCCeeeCCCCCEEEEeee
Q 004475 318 YKT------------SQTRTWLVCPGSKDVAPRVLFDRVFENV--YS--DPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 318 ~~~------------~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~--~~~~~~~~~spDG~~l~~~~~ 371 (751)
..+ ...-||+.++..+ ....|........ .. ....|-|+|||||++|+|.+.
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred CCCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 100 1124667777763 4445544432111 00 113455889999999999994
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=139.58 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=107.1
Q ss_pred hCCeEEEEcCCCCCCCCCCCCCCch---------hHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHh
Q 004475 552 ARRFAVLAGPSIPIIGEGDKLPNDR---------FVEQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~~~~~---------~~~~~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~ 621 (751)
.++|.|++ .+.+|+|.+..... ...+..+++. ..+.+.- +.+++. ++||||||.+|+.++.+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~---~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQY---RLVTEGL--GVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHH---HHHHHhc--CCCceeEEEEECHHHHHHHHHHHh
Confidence 57899999 66678887643321 1223333332 3333322 234664 89999999999999999
Q ss_pred CCCceeEEEEccCCCCCCC-Cc----------------c---Cccccc-----------------------ccch-hh--
Q 004475 622 APHLFCCGIARSGSYNKTL-TP----------------F---GFQTEF-----------------------RTLW-EA-- 655 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~-~~----------------~---~~~~~~-----------------------~~~~-~~-- 655 (751)
+|++++++|++++...... .. + .+.... .... ..
T Consensus 175 ~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (360)
T PRK06489 175 YPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAAD 254 (360)
T ss_pred CchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHH
Confidence 9999999998876421000 00 0 000000 0000 00
Q ss_pred --------------HHHH-------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHH--HHHHHHHHhCCCcEEEEEe
Q 004475 656 --------------TNVY-------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA--ERFFDALKGHGALSRLVLL 712 (751)
Q Consensus 656 --------------~~~~-------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~--~~~~~~l~~~~~~~~~~~~ 712 (751)
...+ ...+....+.++++|+|+++|++|..+| +..+ +.+.+.++ ..+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip----~a~l~~i 328 (360)
T PRK06489 255 KLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVK----HGRLVLI 328 (360)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCc----CCeEEEE
Confidence 0000 0011123456789999999999999998 6654 45555543 4589999
Q ss_pred CCC----CCcCCccccHHHHHHHHHHHHHHHh
Q 004475 713 PFE----HHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 713 ~~~----~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
|++ ||... +....+.+.+.+||++.-
T Consensus 329 ~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 329 PASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 996 99874 578889999999998653
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=134.38 Aligned_cols=195 Identities=19% Similarity=0.133 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA-VEE 591 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~-v~~ 591 (751)
|+||++||.+. ....+ ......|+ +||.|++ ++.+|+|.+...........+++.+. +..
T Consensus 2 ~~vv~~hG~~~-----------~~~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLG-----------SGADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCC-----------chhhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 78999999541 11111 13344555 8999999 56667777644322112222333332 444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----cC--------cccc----------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----FG--------FQTE---------- 648 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----~~--------~~~~---------- 648 (751)
+.+. .+.+++.++|||+||.+|+.++.++|+.++++++.++........ .. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4333 234689999999999999999999999999999988753211100 00 0000
Q ss_pred ----cc----cchhhH----------------HHHH------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 649 ----FR----TLWEAT----------------NVYI------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 649 ----~~----~~~~~~----------------~~~~------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
.. ...... ..+. .......+.++++|+|+++|++|..++ ... +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~----~ 213 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIA----K 213 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHH----H
Confidence 00 000000 0000 001122356789999999999998643 333 3
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+.+....++++++|+++|... .+..+.+...+.+||
T Consensus 214 ~~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 214 EMQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred HHHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 3344445678999999999876 455677888888887
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=129.99 Aligned_cols=157 Identities=22% Similarity=0.188 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---------ccCcccc--ccc
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------PFGFQTE--FRT 651 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---------~~~~~~~--~~~ 651 (751)
+-+.++++||++++.+++++|+|+|.|.||-+|+.+|+..| .++++|+.+|..-.... +...... ...
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 45679999999999999999999999999999999999996 79999999885221100 0000000 000
Q ss_pred chhhH------HHH------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCC
Q 004475 652 LWEAT------NVY------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL--SRLVLLPFEHH 717 (751)
Q Consensus 652 ~~~~~------~~~------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~H 717 (751)
.+... ..+ ......-.++++++|+|+++|++|...| ....+.++.++|++++.+ ++++.||++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~Wp-S~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWP-SSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS--HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccc-hHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 00000 000 0011112366789999999999999998 244566777889888765 88899999999
Q ss_pred cCCccc---------------------------cHHHHHHHHHHHHHHHhc
Q 004475 718 VYAARE---------------------------NVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 718 ~~~~~~---------------------------~~~~~~~~~~~fl~~~l~ 741 (751)
.+..+- ...+.++++++||+++|.
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 763210 124568889999999986
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=134.96 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....|. .....|++++ .|++ ++.+|+|.+.... .......+|+...+
T Consensus 27 g~~vvllHG~~~--------------~~~~w~-~~~~~L~~~~-~via---~D~~G~G~S~~~~~~~~~~~~a~dl~~ll 87 (295)
T PRK03592 27 GDPIVFLHGNPT--------------SSYLWR-NIIPHLAGLG-RCLA---PDLIGMGASDKPDIDYTFADHARYLDAWF 87 (295)
T ss_pred CCEEEEECCCCC--------------CHHHHH-HHHHHHhhCC-EEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 368999999641 111111 3344666665 8888 5667888775432 23455566666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---Cc---------cCccc--c-------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---TP---------FGFQT--E------- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---~~---------~~~~~--~------- 648 (751)
+.+ ..+++.++||||||.+|+.++.++|++++++|++++...... .. +.... .
T Consensus 88 ~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (295)
T PRK03592 88 DAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEEN 161 (295)
T ss_pred HHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchh
Confidence 554 236899999999999999999999999999999887422100 00 00000 0
Q ss_pred --cccchh-------hHH---HH-----------------HhcC--------------cccccCCCCCCEEEEEcCCCCC
Q 004475 649 --FRTLWE-------ATN---VY-----------------IEMS--------------PITHANKIKKPILIIHGEVDDK 685 (751)
Q Consensus 649 --~~~~~~-------~~~---~~-----------------~~~~--------------~~~~~~~~~~P~li~~G~~D~~ 685 (751)
....+. ..+ .+ .... ....+.++++|+|+++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 241 (295)
T PRK03592 162 VFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAI 241 (295)
T ss_pred hHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcc
Confidence 000000 000 00 0000 0012456799999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 686 VGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 686 vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++ +....++...+.. ..++++++++||... .+..+++.+.+.+|+.....
T Consensus 242 ~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 242 LT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred cC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhcc
Confidence 95 4555455443322 357899999999987 56788999999999987643
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=137.72 Aligned_cols=245 Identities=16% Similarity=0.104 Sum_probs=149.6
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCC--CchHHHHHHhCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARR 554 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G 554 (751)
..++.|+..+.+.||..+....+.+.+... ...+.|+|+++||.+..+ ..|... ...++..|+++|
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~-~~~~~~~Vll~HGl~~ss-----------~~w~~~~~~~sla~~La~~G 107 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPRL-GSQRGPPVLLQHGLFMAG-----------DAWFLNSPEQSLGFILADHG 107 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCCC-CCCCCCeEEEeCcccccc-----------cceeecCcccchHHHHHhCC
Confidence 357899999999999887777664332111 112358899999964211 222111 123455688999
Q ss_pred eEEEEcCCCCCCC-CCCC---CCC-----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-
Q 004475 555 FAVLAGPSIPIIG-EGDK---LPN-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH- 624 (751)
Q Consensus 555 ~~v~~~~~~~~~g-~g~~---~~~-----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~- 624 (751)
|.|++++.++... +|.. ... ..+.+....|+.++++++.+.. ..++.++||||||.+++.++ ..|+
T Consensus 108 ydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~ 183 (395)
T PLN02872 108 FDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNV 183 (395)
T ss_pred CCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHH
Confidence 9999965543211 1111 011 1222333479999999998653 36899999999999998544 5665
Q ss_pred --ceeEEEEccCCCCCCC--Cc----------------cC---c-cc------------ccc------------------
Q 004475 625 --LFCCGIARSGSYNKTL--TP----------------FG---F-QT------------EFR------------------ 650 (751)
Q Consensus 625 --~~~~~v~~~~~~d~~~--~~----------------~~---~-~~------------~~~------------------ 650 (751)
+++++++++|...... .+ ++ + +. ...
T Consensus 184 ~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n 263 (395)
T PLN02872 184 VEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFN 263 (395)
T ss_pred HHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccc
Confidence 4666666666421000 00 00 0 00 000
Q ss_pred ----------cc----------h-----------------hhHHHHHhc-CcccccCCC--CCCEEEEEcCCCCCCCCCh
Q 004475 651 ----------TL----------W-----------------EATNVYIEM-SPITHANKI--KKPILIIHGEVDDKVGLFP 690 (751)
Q Consensus 651 ----------~~----------~-----------------~~~~~~~~~-~~~~~~~~~--~~P~li~~G~~D~~vp~~~ 690 (751)
.+ | .+...|... .|...+.++ ++|+++++|++|.+++ +
T Consensus 264 ~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~ 341 (395)
T PLN02872 264 ASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--V 341 (395)
T ss_pred hhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--H
Confidence 00 0 000111111 123346677 5799999999999998 8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCc--CCccccHHHHHHHHHHHHHHHhcC
Q 004475 691 MQAERFFDALKGHGALSRLVLLPFEHHV--YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 691 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
..+..+.+.+.. ..+++.+++.+|. +...+..+.+++.+++||++++..
T Consensus 342 ~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 342 TDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred HHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 888888877753 2478889999996 444566788999999999987653
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=116.23 Aligned_cols=202 Identities=18% Similarity=0.240 Sum_probs=133.2
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
+.++.++...| .+.+..- |.. ....|+.|.+|--+... | ..........+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G-~le~~~~-~~~-----~~~~~iAli~HPHPl~g--------G--tm~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAG-RLEGRYE-PAK-----TPAAPIALICHPHPLFG--------G--TMNNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCcc-cceeccC-CCC-----CCCCceEEecCCCcccc--------C--ccCCHHHHHHHHHHHhCCceEEe-
Confidence 34455554333 3444443 333 22478999999865321 1 11111223456678899999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 561 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
++++|-|++.+.....-.+.+|+..+++|++++.. +..-..+.|+|+|+++++.+|.+.|+ ....++..|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 55566666655444455678999999999999853 22234789999999999999999865 3555566665441
Q ss_pred CccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 641 TPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+ ....+....+|.++++|+.|.++. .....+..+ +.+.+++++++++|.|.
T Consensus 140 --~--------------------dfs~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 --Y--------------------DFSFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred --h--------------------hhhhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 0 001233456899999999999987 555444432 25678999999999984
Q ss_pred ccccHHHHHHHHHHHHH
Q 004475 721 ARENVMHVIWETDRWLQ 737 (751)
Q Consensus 721 ~~~~~~~~~~~~~~fl~ 737 (751)
.+.....+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 456677778888885
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=122.59 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
|.||++||-+ +++..+.. ......+.+ .+|.|++ .+.+|++ . ++.+.++
T Consensus 2 p~illlHGf~-----------ss~~~~~~--~~~~~~l~~~~~~~~v~~---~dl~g~~---------~----~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFN-----------SSPRSAKA--TLLKNWLAQHHPDIEMIV---PQLPPYP---------A----DAAELLE 52 (190)
T ss_pred CeEEEECCCC-----------CCcchHHH--HHHHHHHHHhCCCCeEEe---CCCCCCH---------H----HHHHHHH
Confidence 6799999953 22222211 012233444 3799998 4444542 2 2333444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCcccccccch--hhHHHHHh
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQTEFRTLW--EATNVYIE 661 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-------~~~~~~~~~~~--~~~~~~~~ 661 (751)
.+.++. +.+++.++|+||||.+|+.++.++|. + +|+++|..+..... ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 443332 23589999999999999999999983 3 46677765521000 00000000111 11111222
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+.. +. ..+|++++||++|.+|| +..+.++++. +.+++++|++|.+.. .+++.+.+.+||.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 22222 33 56889999999999999 9999999873 246678999999854 3678888999874
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.5e-13 Score=134.83 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-----hhHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-----RFVEQLVSSAE 586 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-----~~~~~~~~d~~ 586 (751)
.|.||++||++.. ...+.......+...||.|++ .+.+|+|.+.... .......+|+.
T Consensus 25 ~~~vl~~hG~~g~--------------~~~~~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGM--------------SHEYLENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCc--------------cHHHHHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 4789999996311 011111222233445999999 5566777664321 12334444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCcccc---------cc
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQTE---------FR 650 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-------~~~~~~---------~~ 650 (751)
..++.+ +..++.++||||||.+++.++..+|++++++|+.++........ ...... ..
T Consensus 88 ~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVREKL------GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHc------CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 443322 33579999999999999999999999999999887653211000 000000 00
Q ss_pred cchhh------HHHHH------------------------------------------hcCcccccCCCCCCEEEEEcCC
Q 004475 651 TLWEA------TNVYI------------------------------------------EMSPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 651 ~~~~~------~~~~~------------------------------------------~~~~~~~~~~~~~P~li~~G~~ 682 (751)
..+.. ...+. .......+.++++|+|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 00000 00000 0011123456889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|.. + +.....+.+.+. .++++++++++|... .+...++.+.+.+||+
T Consensus 242 D~~-~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DTM-T--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Ccc-C--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 984 5 566665555443 457899999999876 4677888888888873
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=135.59 Aligned_cols=204 Identities=17% Similarity=0.102 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 588 (751)
.|+||++||.+... ..+ ......|+ ++|.|++ ++.+|+|.+..... ......+.+.+.
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58999999964210 111 12233444 4699999 66677777643321 111222222222
Q ss_pred -HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c-----------c-----------C
Q 004475 589 -VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P-----------F-----------G 644 (751)
Q Consensus 589 -v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~-----------~-----------~ 644 (751)
.+++... +..+++++||||||++|+.++.++|++++++|+.+|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2444333 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred c-c---------------ccc----------c--cchhhHHHH---------------------------HhcCcccccC
Q 004475 645 F-Q---------------TEF----------R--TLWEATNVY---------------------------IEMSPITHAN 669 (751)
Q Consensus 645 ~-~---------------~~~----------~--~~~~~~~~~---------------------------~~~~~~~~~~ 669 (751)
+ + ... . ......+.+ ........+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 0 0 000 0 000000000 0011112356
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
++++|+++++|++|.+++ ....++.+.+ +..+++++++++||... .+....+.+.+.+|++..+....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 789999999999998754 4444444333 34578999999999865 67788999999999999887543
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=135.64 Aligned_cols=184 Identities=16% Similarity=0.063 Sum_probs=121.0
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.++..|+++||.|+++| ..|.|.+........-...++.+++++++++.. ..+|.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D---~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~--~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLID---WGYPDRADRYLTLDDYINGYIDKCVDYICRTSK--LDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEe---CCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHhC--CCcccEEEECHHHHHHHHHHHhCch
Confidence 56778899999999954 445554433322322233558889999987643 4689999999999999999999999
Q ss_pred ceeEEEEccCCCCCCCCccC-------------------ccc-----------ccccch----------hhHH---HH--
Q 004475 625 LFCCGIARSGSYNKTLTPFG-------------------FQT-----------EFRTLW----------EATN---VY-- 659 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~~~~~~-------------------~~~-----------~~~~~~----------~~~~---~~-- 659 (751)
+++++|++++..+....... .+. .....| .+.+ .+
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 99999999987763211100 000 000000 0000 00
Q ss_pred ------------------------HhcCc----------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC
Q 004475 660 ------------------------IEMSP----------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705 (751)
Q Consensus 660 ------------------------~~~~~----------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~ 705 (751)
..... ...+.++++|+|+++|++|.++| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 00000 01245678999999999999998 8888888887654 4
Q ss_pred cEEEEEeCCCCCcC-Cccc-cHHHHHHHHHHHHHH
Q 004475 706 LSRLVLLPFEHHVY-AARE-NVMHVIWETDRWLQK 738 (751)
Q Consensus 706 ~~~~~~~~~~~H~~-~~~~-~~~~~~~~~~~fl~~ 738 (751)
+++++++++ +|.. .... ...+++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 5653 3222 357889999999975
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=126.61 Aligned_cols=229 Identities=18% Similarity=0.169 Sum_probs=140.4
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
.+...+|..+...+..++. ....|.||++||- .|+.. ..+...+...+.++||.|++ +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL-----------~G~s~--s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGL-----------EGSSN--SPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEecc-----------CCCCc--CHHHHHHHHHHHhcCCeEEE---Ee
Confidence 3334455555555554322 1236999999993 33222 22333456677889999999 55
Q ss_pred CCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH-HHHHHHHhCCC-ceeEEEEccCCCCCCC
Q 004475 565 IIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAF-MTAHLLAHAPH-LFCCGIARSGSYNKTL 640 (751)
Q Consensus 565 ~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~-~a~~~a~~~p~-~~~~~v~~~~~~d~~~ 640 (751)
.+|++.+.. +.-+.....+|+..++++++++.. +.++.++|.|+||. +|.+++-...+ .+.++++.+..+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 566665532 333445567999999999998643 57899999999995 55444433311 3456665555433110
Q ss_pred C------ccC----------------------c----ccc-------cccch--------------hhHHHHHhcCcccc
Q 004475 641 T------PFG----------------------F----QTE-------FRTLW--------------EATNVYIEMSPITH 667 (751)
Q Consensus 641 ~------~~~----------------------~----~~~-------~~~~~--------------~~~~~~~~~~~~~~ 667 (751)
. .+. + +.. ....| ...+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0 000 0 000 01111 11356777788899
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--H--HHHHHHHHHHHHHHhc
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--V--MHVIWETDRWLQKYCL 741 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~--~~~~~~~~~fl~~~l~ 741 (751)
+.+|.+|+||||..+|++++ ....-..... .+..+.+.+-+.+||.-..... . .-..+++.+||+..+.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999997 4332222111 4567899999999997432211 1 1345678999988764
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=132.33 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=116.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+. . ...| ...... +..+|.|++ ++.+|+|.+...... ++.+.++.
T Consensus 4 ~~~iv~~HG~~~-----------~---~~~~-~~~~~~-l~~~~~vi~---~d~~G~G~s~~~~~~------~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGM-----------N---AEVF-RCLDEE-LSAHFTLHL---VDLPGHGRSRGFGPL------SLADAAEA 58 (245)
T ss_pred CceEEEEcCCCC-----------c---hhhH-HHHHHh-hccCeEEEE---ecCCcCccCCCCCCc------CHHHHHHH
Confidence 378999999531 1 1111 122333 346799999 566677776432211 12233333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-cc--Ccc------------cccc---cch
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PF--GFQ------------TEFR---TLW 653 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~--~~~------------~~~~---~~~ 653 (751)
+.+.. ..++.++||||||.+++.++.++|++++++|++++....... .+ ... .... ..+
T Consensus 59 ~~~~~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T TIGR01738 59 IAAQA---PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERF 135 (245)
T ss_pred HHHhC---CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 33321 258999999999999999999999999999987664221000 00 000 0000 000
Q ss_pred ----------hh--H---------------H-------HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 654 ----------EA--T---------------N-------VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 654 ----------~~--~---------------~-------~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
.. . . .+........+.++++|+|+++|++|..+| ....+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~ 213 (245)
T TIGR01738 136 LALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKL 213 (245)
T ss_pred HHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHh
Confidence 00 0 0 000011112356889999999999999998 7777766655
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++ .++++++++++|... .+....+.+.+.+|+
T Consensus 214 ~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 214 AP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred CC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 43 468999999999976 567888888888884
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=133.81 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=104.5
Q ss_pred HHHhCCeEEEEcCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 549 IFLARRFAVLAGPSIPIIGEGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 549 ~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...+|.|++ ++.+|+|.+..... ...+..+|+...++.+ +..++.++||||||.+++.++.++|+
T Consensus 48 ~~~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvG~S~GG~ia~~~a~~~p~ 118 (306)
T TIGR01249 48 FFDPETYRIVL---FDQRGCGKSTPHACLEENTTWDLVADIEKLREKL------GIKNWLVFGGSWGSTLALAYAQTHPE 118 (306)
T ss_pred ccCccCCEEEE---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEECHHHHHHHHHHHHChH
Confidence 34457899999 66678887654321 1233444444433332 23579999999999999999999999
Q ss_pred ceeEEEEccCCCCCC-------------CCc-----c--Ccccccc------------------------cch---hh--
Q 004475 625 LFCCGIARSGSYNKT-------------LTP-----F--GFQTEFR------------------------TLW---EA-- 655 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~-------------~~~-----~--~~~~~~~------------------------~~~---~~-- 655 (751)
+++++|+.++..... ..+ + ....... ..| ..
T Consensus 119 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (306)
T TIGR01249 119 VVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTT 198 (306)
T ss_pred hhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChh
Confidence 999888876543210 000 0 0000000 000 00
Q ss_pred --------------H---HHHHh-----------cC----cccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 656 --------------T---NVYIE-----------MS----PITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 656 --------------~---~~~~~-----------~~----~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
+ ..+.. .. ....+.++ ++|+|++||+.|.++| ...+.++++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~- 275 (306)
T TIGR01249 199 LLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFP- 275 (306)
T ss_pred hcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCC-
Confidence 0 00000 00 01233456 5899999999999998 888888877654
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+++++++++|..... ...+.+.+|+...
T Consensus 276 ---~~~~~~~~~~gH~~~~~----~~~~~i~~~~~~~ 305 (306)
T TIGR01249 276 ---EAELKVTNNAGHSAFDP----NNLAALVHALETY 305 (306)
T ss_pred ---CCEEEEECCCCCCCCCh----HHHHHHHHHHHHh
Confidence 35799999999997532 3456667776654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=132.19 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l 592 (751)
|.||++||.|.. ...|. .....| ...|.|++ ++.+|+|.+.....+ ..+ +.++.+
T Consensus 14 ~~ivllHG~~~~--------------~~~w~-~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLN--------------AEVWR-CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAV 68 (256)
T ss_pred CeEEEECCCCCC--------------hhHHH-HHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHH---HHHHHH
Confidence 569999995411 11111 223333 45699999 666788776433211 112 222233
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---ccCc-----------cc---ccccch--
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---PFGF-----------QT---EFRTLW-- 653 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~---~~~~-----------~~---~~~~~~-- 653 (751)
.+. ..+++.++||||||.+|+.+|.++|++++++|++++....... .... .. .....+
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 332 2468999999999999999999999999999988763211000 0000 00 000000
Q ss_pred ----------hhH----------------------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 654 ----------EAT----------------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 654 ----------~~~----------------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
... ..+...+....+.++++|+|+++|++|..+| ...+..+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i- 222 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW- 222 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhC-
Confidence 000 0001112223456789999999999999988 77666555554
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
...++.++|++||... .+..+.+...+.+|-.
T Consensus 223 ---~~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 223 ---PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ---CCCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3458999999999876 5777888888887743
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=134.56 Aligned_cols=170 Identities=21% Similarity=0.226 Sum_probs=107.9
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
..++|.|++ ++.+|+|.+.... .......+|+.+.++.+. .+++.++|||+||.+|+.+|.++|+++++
T Consensus 109 l~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 356799999 5566777765432 122333455555554442 35799999999999999999999999999
Q ss_pred EEEccCCCCCCCCc------------cC---ccccc----------------c----------cchhh------------
Q 004475 629 GIARSGSYNKTLTP------------FG---FQTEF----------------R----------TLWEA------------ 655 (751)
Q Consensus 629 ~v~~~~~~d~~~~~------------~~---~~~~~----------------~----------~~~~~------------ 655 (751)
+|++++........ .. ..... . ..+..
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99877532110000 00 00000 0 00000
Q ss_pred ---------HHH-HH----------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 656 ---------TNV-YI----------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 656 ---------~~~-~~----------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
.+. +. .......+.++++|+|+++|++|..+| ...+.++.+.+. +.+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p----~a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYP----DTTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEEe-CC
Confidence 000 00 001112356789999999999999998 888777766653 3467777 58
Q ss_pred CCcCCccccHHHHHHHHHHHHH
Q 004475 716 HHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
||... .+...++.+.+.+|+.
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99986 6778889999999985
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=136.12 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=113.6
Q ss_pred HHHhCCeEEEEcCCCCCCCCCCCCCCch----h-H-----HHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHH
Q 004475 549 IFLARRFAVLAGPSIPIIGEGDKLPNDR----F-V-----EQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAH 617 (751)
Q Consensus 549 ~~~~~G~~v~~~~~~~~~g~g~~~~~~~----~-~-----~~~~~d~~~~v~~l~~~~~id~~~i-~l~G~S~GG~~a~~ 617 (751)
.|...+|.|++ ++.+|+|.+..... + . ....+|+...+..+.+.- ..+++ .|+||||||.+|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHH
Confidence 34457899999 66678877643221 1 0 113455555444444322 23674 78999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCC----------------CccC---cc--------------------cc-cc-cch---
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTL----------------TPFG---FQ--------------------TE-FR-TLW--- 653 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~----------------~~~~---~~--------------------~~-~~-~~~--- 653 (751)
++.++|++++++|++++...... ..+. +. .. .. ..+
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865422000 0000 00 00 00 000
Q ss_pred --hh-HH----H-------------------HHhc----------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 654 --EA-TN----V-------------------YIEM----------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 654 --~~-~~----~-------------------~~~~----------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
.. .+ . +... .....+.++++|+|+++|++|..+| +..++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 00 00 0 0000 1112345689999999999999998 88877776
Q ss_pred HHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 698 DALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+. ..+++++++ +||... .+....+...+.+||.+.+.
T Consensus 299 ~~ip----~a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIP----NAELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCC----CCeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 6653 358899998 899875 56677888999999998764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=127.21 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=160.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+|+++.++. .+|+...+.........+..++|||+++|+.+.... ...+....|.++.++|+.+.+.......
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS----STTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CcEEEEEEcC--CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 4899999954 558877766444444667889999998887764311 1245566666676657766664332110
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
. ....++.+|||++|+...... +.+.++++
T Consensus 87 ~--~p~~i~~~~~g~~l~vany~~------------------------------------------------g~v~v~~l 116 (345)
T PF10282_consen 87 S--SPCHIAVDPDGRFLYVANYGG------------------------------------------------GSVSVFPL 116 (345)
T ss_dssp S--CEEEEEECTTSSEEEEEETTT------------------------------------------------TEEEEEEE
T ss_pred C--CcEEEEEecCCCEEEEEEccC------------------------------------------------CeEEEEEc
Confidence 0 124668899999998874421 23444443
Q ss_pred --CCCceec---C------------CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eeeec
Q 004475 165 --DGTAKDF---G------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (751)
Q Consensus 165 --~G~~~~l---t------------~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~ 225 (751)
+|..... . .....+.+.++|||++|++.... ...|++++.+... +....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEee
Confidence 4522111 0 11456689999999999886543 3357777776443 33211
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---e----c
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---L----D 298 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~----~ 298 (751)
... .....+.|.+.|+|||++ +|.+.. ..+.|.++++++.++ ..+.+.. . .
T Consensus 185 ~~~---------~~~G~GPRh~~f~pdg~~-~Yv~~e-----------~s~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIK---------VPPGSGPRHLAFSPDGKY-AYVVNE-----------LSNTVSVFDYDPSDG-SLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEE---------CSTTSSEEEEEE-TTSSE-EEEEET-----------TTTEEEEEEEETTTT-EEEEEEEEESCETTSC
T ss_pred ccc---------cccCCCCcEEEEcCCcCE-EEEecC-----------CCCcEEEEeecccCC-ceeEEEEeeecccccc
Confidence 111 112356789999999998 555441 224555555531112 2222111 0 1
Q ss_pred e--eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 299 L--RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 299 ~--~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
+ ... +.+||||++|+.+. +....-.+|.++..++ ..+.+........ .+-.++++|||++|+.....
T Consensus 243 ~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G~----~Pr~~~~s~~g~~l~Va~~~--- 312 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGGK----FPRHFAFSPDGRYLYVANQD--- 312 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESSS----SEEEEEE-TTSSEEEEEETT---
T ss_pred ccCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCCC----CccEEEEeCCCCEEEEEecC---
Confidence 1 234 88999999876544 4444445666655553 3333322111000 00117799999999887722
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.....++.+|.++|.++.+-
T Consensus 313 ---------------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 ---------------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---------------TTEEEEEEEETTTTEEEEEE
T ss_pred ---------------CCeEEEEEEeCCCCcEEEec
Confidence 23445667777888876653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-11 Score=119.30 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=80.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
-+...++||||+++|.+. ....++++|-.+|+..- |-....+ .+++..++||||+++++..+.+...
T Consensus 192 FV~~VRysPDG~~Fat~g----------sDgki~iyDGktge~vg~l~~~~aH--kGsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG----------SDGKIYIYDGKTGEKVGELEDSDAH--KGSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred ceeeEEECCCCCeEEEec----------CCccEEEEcCCCccEEEEecCCCCc--cccEEEEEECCCCceEEEecCCceE
Confidence 568899999999999973 45789999988887443 3222222 3467899999999999987654322
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCce-----------ecCCC-ceEE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK-----------DFGTP-AVYT 178 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~-----------~lt~~-~~~~ 178 (751)
. .++.......++...+....+..+. -+| ...+|..+.++|.+. .+.-+ ..+.
T Consensus 260 K---IWdVs~~slv~t~~~~~~v~dqqvG---------~lW---qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 260 K---IWDVSTNSLVSTWPMGSTVEDQQVG---------CLW---QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred E---EEEeeccceEEEeecCCchhceEEE---------EEE---eCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 1 2222222222222211111111110 011 124566666666322 22223 6788
Q ss_pred eeeeCCCCceEEEEEec
Q 004475 179 AVEPSPDQKYVLITSMH 195 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~ 195 (751)
.++.+|||++|+-.+.+
T Consensus 325 aLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEEEcCCCCEEEeeccC
Confidence 99999999998766544
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=136.79 Aligned_cols=192 Identities=17% Similarity=0.116 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC--CchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....| ......+.++|.|++ ++.+|+|.+.. .........+++...+
T Consensus 131 ~~~vl~~HG~~~-----------~~~~~-----~~~~~~l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 131 GTPVVLIHGFGG-----------DLNNW-----LFNHAALAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred CCeEEEECCCCC-----------ccchH-----HHHHHHHhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 578999999531 11111 112223445699999 56667776632 2222334344433333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc----ccc-----------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF----QTE----------------- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~----~~~----------------- 648 (751)
+ . ++..+++++|||+||.+|+.++..+|+++.+++++++..........+ ...
T Consensus 192 ~----~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
T PRK14875 192 D----A--LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADP 265 (371)
T ss_pred H----h--cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcCh
Confidence 2 2 345689999999999999999999999999999988753211000000 000
Q ss_pred cccchhh-------------HHH---HH---------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC
Q 004475 649 FRTLWEA-------------TNV---YI---------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703 (751)
Q Consensus 649 ~~~~~~~-------------~~~---~~---------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~ 703 (751)
....+.. ... +. ..+....+.++++|+|+++|++|..+| +..+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~------ 337 (371)
T PRK14875 266 ALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP------ 337 (371)
T ss_pred hhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc------
Confidence 0000000 000 00 001112456789999999999999998 66654332
Q ss_pred CCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 704 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 704 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..+++.++++++|... .+....+.+.+.+||.+
T Consensus 338 -~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 338 -DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred -CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 2468899999999876 56667777788888764
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=134.50 Aligned_cols=68 Identities=19% Similarity=0.101 Sum_probs=54.5
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE-eCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL-LPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.+|++|+|+++|+.|..+| +..++.+.+.+......++++. ++++||... .+..+.+.+.+.+||.
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 456789999999999999998 9999999999887644444444 568999876 5677888889999873
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=129.97 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+. .... +......+.++|.|++ ++.+|+|.+...... ....++..+.+..
T Consensus 34 ~~~iv~lHG~~~--------------~~~~--~~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~ 93 (286)
T PRK03204 34 GPPILLCHGNPT--------------WSFL--YRDIIVALRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGE 93 (286)
T ss_pred CCEEEEECCCCc--------------cHHH--HHHHHHHHhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHH
Confidence 378999999531 1111 1122233456799999 666688776543221 1123344444444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c---c-----Cccccc---------c---
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P---F-----GFQTEF---------R--- 650 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~---~-----~~~~~~---------~--- 650 (751)
+.+.. +..++.++||||||.+++.++..+|++++++|+.++..-.... . + ...... .
T Consensus 94 ~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T PRK03204 94 FVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLI 171 (286)
T ss_pred HHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhc
Confidence 44432 3467999999999999999999999999999987664310000 0 0 000000 0
Q ss_pred -----cch--hhHHHHH-----------------hcCc----ccc----cCC--CCCCEEEEEcCCCCCCCCChH-HHHH
Q 004475 651 -----TLW--EATNVYI-----------------EMSP----ITH----ANK--IKKPILIIHGEVDDKVGLFPM-QAER 695 (751)
Q Consensus 651 -----~~~--~~~~~~~-----------------~~~~----~~~----~~~--~~~P~li~~G~~D~~vp~~~~-~~~~ 695 (751)
... .....+. .... ... +.+ +++|+|+++|++|..++ +. ..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~ 249 (286)
T PRK03204 172 PAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPR 249 (286)
T ss_pred cccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHH
Confidence 000 0000000 0000 000 111 27999999999999875 44 3444
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+.+. ..++++++++||... .+..+.+.+.+.+||
T Consensus 250 ~~~~ip----~~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 250 LRATFP----DHVLVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred HHHhcC----CCeEEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 554443 358999999999987 677888899999887
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=119.45 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=128.4
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
+.+++..+ .+.++++.|.+ .++.|+||++||.+... +........++..|+++||.|+. +
T Consensus 3 ~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~~~-----------~~~~~~~~~la~~La~~Gy~Vl~---~ 62 (266)
T TIGR03101 3 FFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAEEM-----------NKSRRMVALQARAFAAGGFGVLQ---I 62 (266)
T ss_pred EEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcccc-----------cchhHHHHHHHHHHHHCCCEEEE---E
Confidence 44555444 47788887765 23468999999953100 11111111345678889999999 5
Q ss_pred CCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 564 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 564 ~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
+++|+|.+... ........+|+..+++++++.+ ..+|+++||||||.+++.++.++|+.++++|+++|+..-...
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 66677766432 2234567899999999998763 468999999999999999999999999999999997551100
Q ss_pred ccC---c--c---cccccch--------------------h----hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCC
Q 004475 642 PFG---F--Q---TEFRTLW--------------------E----ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 642 ~~~---~--~---~~~~~~~--------------------~----~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
... + . ....... . ....+........... ..++|++.-.-+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCC-C
Confidence 000 0 0 0000000 0 0011111111111111 4567877764332111 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
......+.+++.+.|..++...|++-
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45677889999999999999999987
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-12 Score=132.07 Aligned_cols=72 Identities=17% Similarity=0.051 Sum_probs=61.1
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+.+|++|+|+++|+.|..+| +..++++.+.+...+..+++.+++ ++||... .+...++.+.+.+||.+.-.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhhh
Confidence 346789999999999999998 999999999998877777888775 8999876 56677889999999987543
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=130.88 Aligned_cols=159 Identities=24% Similarity=0.301 Sum_probs=103.7
Q ss_pred HHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 546 SSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 546 ~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
+...| ++||.|++ ++.+|+|.+.... ....+..+|+.++++.+. ..++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALG------IKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTT------TSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhcccccc------cccccccccccccccccccccc
Confidence 44455 58999999 6666787775432 234455555555554442 2689999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCc--c----Cccc--------------ccccchhhH-----------HH--------HHhc
Q 004475 622 APHLFCCGIARSGSYNKTLTP--F----GFQT--------------EFRTLWEAT-----------NV--------YIEM 662 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~~~--~----~~~~--------------~~~~~~~~~-----------~~--------~~~~ 662 (751)
+|++++++|++++........ . .+.. .....+... +. ....
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999976421100 0 0000 000000000 00 0112
Q ss_pred CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 663 SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 663 ~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
.....+.++++|+++++|++|..++ ....+.+.+.+ ..++++++++++|...
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 2234566789999999999999987 66666665544 3579999999999865
|
... |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.1e-12 Score=119.04 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=57.8
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeecc
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLF 78 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt 78 (751)
+..+.+.+||+.+ ++++-.... ..++...+|||||++||-- ...+.|.++++++|+ .+.|.
T Consensus 134 sGD~TvR~WD~~T------eTp~~t~KgH~~WVlcvawsPDgk~iASG----------~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 134 SGDTTVRLWDLDT------ETPLFTCKGHKNWVLCVAWSPDGKKIASG----------SKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred CCCceEEeeccCC------CCcceeecCCccEEEEEEECCCcchhhcc----------ccCCeEEEecCCCCCccccccc
Confidence 3456788999987 333332333 3389999999999999984 445788888988876 45564
Q ss_pred CCCCccccceeeeeEEe-----cCCcEEEEeecC
Q 004475 79 ESPDICLNAVFGSFVWV-----NNSTLLIFTIPS 107 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~ws-----pDg~~l~~~~~~ 107 (751)
.... .+..++|- |.+++|+..+.+
T Consensus 198 gH~K-----~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 198 GHKK-----WITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred Cccc-----ceeEEeecccccCCCccceecccCC
Confidence 4433 36677885 566766665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=120.21 Aligned_cols=263 Identities=13% Similarity=0.097 Sum_probs=139.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC-CCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-~g~~~~lt~~~~~ 83 (751)
-.|.++++.+ +|+.+.+..++........++||||++|+.... ....|.+++++ +|..+.+......
T Consensus 12 ~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecCC
Confidence 4689999964 255454443443334677899999998866432 22455555554 4544333211111
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....++++|||++|+...... ..|.+++
T Consensus 80 ---~~p~~i~~~~~g~~l~v~~~~~------------------------------------------------~~v~v~~ 108 (330)
T PRK11028 80 ---GSPTHISTDHQGRFLFSASYNA------------------------------------------------NCVSVSP 108 (330)
T ss_pred ---CCceEEEECCCCCEEEEEEcCC------------------------------------------------CeEEEEE
Confidence 0235789999999988774320 2444454
Q ss_pred C--CCCc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCc
Q 004475 164 L--DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 164 ~--~G~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~ 236 (751)
+ +|.. ...... .....++++|||++|++.... ...|++|++++ +...........
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~~------ 170 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEVT------ 170 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCcee------
Confidence 4 3422 111112 334567899999999886543 34688999875 322110000000
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---ec------eeEE-EEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD------LRFS-VSWC 306 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~------~~~~-~~~s 306 (751)
.....+++.+.|+|||++ ++.+.. ..+.|.++++++.++ ..+.+.. .+ .... +.++
T Consensus 171 -~~~g~~p~~~~~~pdg~~-lyv~~~-----------~~~~v~v~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 171 -TVEGAGPRHMVFHPNQQY-AYCVNE-----------LNSSVDVWQLKDPHG-EIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred -cCCCCCCceEEECCCCCE-EEEEec-----------CCCEEEEEEEeCCCC-CEEEEEEEecCCCcCCCCccceeEEEC
Confidence 011234678999999998 555431 235677777642111 2222111 10 1112 5789
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|||++|+.+ +.....-.+|.++.+++ ..+.+....... ....++++|||++|+...
T Consensus 237 pdg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~-----~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 237 PDGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET-----QPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc-----cCCceEECCCCCEEEEEE
Confidence 999987664 33333345555554442 111111111110 111278999999998866
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=116.57 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=122.4
Q ss_pred HHHHHHhCCeEEEEcCCCCCCCCCCCCC---Cchh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 546 SSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRF-----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 546 ~~~~~~~~G~~v~~~~~~~~~g~g~~~~---~~~~-----~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
.+..++..||.|+.||.+..--+..+.. ...+ .+....++...++||+.++ +..+|+++|++|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 3457778899999988743321211111 1111 1234688999999999765 4679999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+....| .|.++++..|.+-. ...+.++++|+|++.++.|..+| +....++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~d--------------------------~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFVD--------------------------SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcCC--------------------------hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 998886 78888888885321 12255688999999999999999 89988888
Q ss_pred HHHHhCCC-cEEEEEeCCCCCcCCcc----------ccHHHHHHHHHHHHHHHhc
Q 004475 698 DALKGHGA-LSRLVLLPFEHHVYAAR----------ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 698 ~~l~~~~~-~~~~~~~~~~~H~~~~~----------~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+.+..+ ..++.+|++.+|+|... ...++.++.++.||.+++.
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 88886532 35799999999999741 1235678889999999873
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=133.03 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred HHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 550 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 550 ~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
|...+|.|++ .+.+|+|.+........+..+|+.+.++.+ +.++ +.++||||||++|+.++.++|+++++
T Consensus 95 L~~~~~~Vi~---~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLA---FDFIGADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 3356899999 455577665433223345566666555544 2234 57999999999999999999999999
Q ss_pred EEEccCCCCCCCCc--cC------------------------------ccc-c-cccchh------------hHH-----
Q 004475 629 GIARSGSYNKTLTP--FG------------------------------FQT-E-FRTLWE------------ATN----- 657 (751)
Q Consensus 629 ~v~~~~~~d~~~~~--~~------------------------------~~~-~-~~~~~~------------~~~----- 657 (751)
+|++++........ +. +.. . ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998753211000 00 000 0 000000 000
Q ss_pred ----HHHhcC-------------cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcC
Q 004475 658 ----VYIEMS-------------PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVY 719 (751)
Q Consensus 658 ----~~~~~~-------------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~ 719 (751)
...... ....+.++++|+|+++|+.|.++| +..+..+.+.+. ...+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~---p~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLG---PRGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcC---CCCeEEEEeCCccHHH
Confidence 000000 011246789999999999999998 887777776653 2357999985 99987
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~ 739 (751)
. .+..+.+...+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 6 677889999999999754
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-11 Score=125.94 Aligned_cols=220 Identities=14% Similarity=0.030 Sum_probs=132.8
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe---
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF--- 555 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--- 555 (751)
..+.+.+.+. -|.....++|+|+++. +.++|+|+++||..|.. ..........+.+.|.
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~---~~~~PvlyllDG~~w~~--------------~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA---PEERPLAILLDGQFWAE--------------SMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC---CCCCCEEEEEECHHhhh--------------cCCHHHHHHHHHHcCCCCc
Confidence 3455666553 4567899999998875 23599999999964321 0001123345566663
Q ss_pred -EEEEcCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 004475 556 -AVLAGPSIPIIGEGDK-LPNDRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 631 (751)
Q Consensus 556 -~v~~~~~~~~~g~g~~-~~~~~~~~~~~~d~~~~v~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 631 (751)
+++.++..+....... .....+...+.+++ +-++.++. ..|+++.+|.|+||||..|+.++.++|+.|.++++
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eL---lP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s 318 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQEL---LPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLS 318 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHH---HHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEE
Confidence 3455443221111111 11223444444544 44444442 24778999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 632 RSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
++|.+-+.... .....| ..+.+... ........++|-+|+.|..+ ...++++++.|+++|.++++.+
T Consensus 319 ~Sgs~ww~~~~-----~~~~~~-l~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~ 385 (411)
T PRK10439 319 QSGSFWWPHRG-----GQQEGV-LLEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQ 385 (411)
T ss_pred eccceecCCcc-----CCchhH-HHHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEE
Confidence 99964211100 000001 01111110 01112346899999998654 5778999999999999999999
Q ss_pred eCCCCCcCCccccHHHHHHHHHHHH
Q 004475 712 LPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 712 ~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++| ||... .+...+...+.||
T Consensus 386 ~~G-GHd~~---~Wr~~L~~~L~~l 406 (411)
T PRK10439 386 VDG-GHDAL---CWRGGLIQGLIDL 406 (411)
T ss_pred CCC-CcCHH---HHHHHHHHHHHHH
Confidence 998 69743 2334444444444
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=125.89 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=122.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc------hhHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSA 585 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~d~ 585 (751)
.|.||++||.+. ....|. .....| ..+|.|++ ++.+|+|.+.... .......+++
T Consensus 127 ~~~ivllHG~~~--------------~~~~w~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPS--------------QAYSYR-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCC--------------CHHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999641 111111 223333 46899999 6677888765432 2345566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--CccC-----------------cc
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPFG-----------------FQ 646 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~~~~-----------------~~ 646 (751)
...++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. ..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6666555 235799999999999999999999999999999998642110 0000 00
Q ss_pred -------c--------cc----ccchh--------hHHHHHhcC-cc-------c---ccCCCCCCEEEEEcCCCCCCCC
Q 004475 647 -------T--------EF----RTLWE--------ATNVYIEMS-PI-------T---HANKIKKPILIIHGEVDDKVGL 688 (751)
Q Consensus 647 -------~--------~~----~~~~~--------~~~~~~~~~-~~-------~---~~~~~~~P~li~~G~~D~~vp~ 688 (751)
. +. ..++. ....+.... .. . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 0 00 00000 000000000 00 0 013478999999999999988
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
...++++.+.. +.++.++|+++|... .+..+++...+.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 458999999999876 5778889999999885
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=117.67 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=160.5
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecC--CcEEEEeecC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPS 107 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~ 107 (751)
...+....||+||+.||..+. ++...||-++ +.+..+...+... .+..+.|+|. +..|+..+.+
T Consensus 175 ~rPis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred CCcceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEecccc----ceeeEEEccCCCccceeeeccC
Confidence 335778899999999999764 5556666554 6665555544432 3678899998 5567665443
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG 186 (751)
+...||.++-+-....|+.+ ..+..++|.|+|
T Consensus 241 -----------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 241 -----------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred -----------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 11234443333356667766 778899999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++|...+.+. ...+||+.++..-.+- .....++.+++|.|||.- +.+..-
T Consensus 274 ~~L~TasfD~-------------tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL--~~tGGl--- 323 (459)
T KOG0272|consen 274 KFLGTASFDS-------------TWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSL--AATGGL--- 323 (459)
T ss_pred ceeeeccccc-------------chhhcccccchhhHhh------------cccccccceeEecCCCce--eeccCc---
Confidence 9999876654 3448999987543221 122345779999999984 443211
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..--.++|+- ++...-.+...-..+. +.|||+|..|+..+. ...-.||.+..... ..+.....
T Consensus 324 --------D~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDLR~r~~----ly~ipAH~ 387 (459)
T KOG0272|consen 324 --------DSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDLRMRSE----LYTIPAHS 387 (459)
T ss_pred --------cchhheeecc--cCcEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeeeccccc----ceeccccc
Confidence 1122334442 1333333334444555 899999999988763 22345665544331 22222222
Q ss_pred ccccCCCCCCCeeeCCC-CCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeE-Eeeccchhhhhceee
Q 004475 346 ENVYSDPGSPMMTRTST-GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER-IWESNREKYFETAVA 423 (751)
Q Consensus 346 ~~~~~~~~~~~~~~spD-G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~ 423 (751)
+-+.. +.|+|+ |..|+..+- ...+.+|...+....+ |...+++ +..
T Consensus 388 nlVS~------Vk~~p~~g~fL~Tasy---------------------D~t~kiWs~~~~~~~ksLaGHe~k-----V~s 435 (459)
T KOG0272|consen 388 NLVSQ------VKYSPQEGYFLVTASY---------------------DNTVKIWSTRTWSPLKSLAGHEGK-----VIS 435 (459)
T ss_pred chhhh------eEecccCCeEEEEccc---------------------CcceeeecCCCcccchhhcCCccc-----eEE
Confidence 32222 789984 666666552 2356777777665533 3333322 333
Q ss_pred eecCCcceeeccCCCEEEEEE
Q 004475 424 LVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+++|+||..++-..
T Consensus 436 -------~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 436 -------LDISPDSQAIATSS 449 (459)
T ss_pred -------EEeccCCceEEEec
Confidence 47899998777553
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-12 Score=123.20 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=112.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~ 590 (751)
.|.||++||.+.. ...|. .....| .+|.|++ ++.+|+|.+..... ......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~--------------~~~w~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGS--------------GQDWQ-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCC--------------hHHHH-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 3789999996421 11111 223333 4799999 66778877644321 23344444444444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc-eeEEEEccCCCCCCCCc-----------cC--ccccc-------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL-FCCGIARSGSYNKTLTP-----------FG--FQTEF------- 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~~~~d~~~~~-----------~~--~~~~~------- 649 (751)
.+ +.+++.++||||||.+|+.++.++|+. ++++++.++........ +. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 346899999999999999999998654 99998877543211000 00 00000
Q ss_pred ---cc-----chhhHHH----------------HHhc------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 650 ---RT-----LWEATNV----------------YIEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 650 ---~~-----~~~~~~~----------------~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
.. ....... +... .....+.++++|+++++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 00 0000000 0000 1112456789999999999998532 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
...++++++++||.+. .+..+.+.+.+.+||..
T Consensus 209 -----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 -----LALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred -----hcCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1468999999999876 67788889999999864
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=114.63 Aligned_cols=226 Identities=19% Similarity=0.171 Sum_probs=135.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIG 567 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g 567 (751)
.++....+++|.|+....+ .|+||++||++.. ..++.+. .+ ...++ ..||.|++++.++..-
T Consensus 42 ~~g~~r~y~l~vP~g~~~~----apLvv~LHG~~~s---gag~~~~--sg--------~d~lAd~~gFlV~yPdg~~~~w 104 (312)
T COG3509 42 VNGLKRSYRLYVPPGLPSG----APLVVVLHGSGGS---GAGQLHG--TG--------WDALADREGFLVAYPDGYDRAW 104 (312)
T ss_pred cCCCccceEEEcCCCCCCC----CCEEEEEecCCCC---hHHhhcc--cc--------hhhhhcccCcEEECcCcccccc
Confidence 4677899999999885432 4999999998532 2222221 11 12334 5799999975543322
Q ss_pred ----CCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 568 ----EGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 568 ----~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+....+. ....+.+..+.++++.|..+..||+.||++.|.|.||.|+..+++.+|+.|.++..+++.......
T Consensus 105 n~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a 184 (312)
T COG3509 105 NANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA 184 (312)
T ss_pred CCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc
Confidence 12221111 223456788899999999999999999999999999999999999999999999998886520000
Q ss_pred ccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-------------------
Q 004475 642 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG------------------- 702 (751)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~------------------- 702 (751)
.....+......--..+|......=..| |-+|..|..++ .....+..+.+..
T Consensus 185 -----~~~~rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 185 -----CTPPRPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred -----cCCCCchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 0000000000000011111100000122 66777777654 4444444444321
Q ss_pred ----CCCcEEEEEeCCCCCcCCccccH-----------HHHHHHHHHHHHHHh
Q 004475 703 ----HGALSRLVLLPFEHHVYAARENV-----------MHVIWETDRWLQKYC 740 (751)
Q Consensus 703 ----~~~~~~~~~~~~~~H~~~~~~~~-----------~~~~~~~~~fl~~~l 740 (751)
.+..+++..+.+.||.+...... -+..++|.+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 12358899999999987532211 235678889998764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=119.08 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=124.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
++.+..||++|++||-.+. +...-+|.+..++. .+..-...++ ...+..+.||||.++|+....+
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~-~kl~~tlvgh--~~~V~yi~wSPDdryLlaCg~~---- 290 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVH-FKLKKTLVGH--SQPVSYIMWSPDDRYLLACGFD---- 290 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcc-eeeeeeeecc--cCceEEEEECCCCCeEEecCch----
Confidence 5889999999999999764 55567787776544 2222111221 1147788999999998866321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~~~~~~~SpDG~ 187 (751)
..++++|+ +|+.+.+-.. ..+.+.+|-|||.
T Consensus 291 ---------------------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~ 325 (519)
T KOG0293|consen 291 ---------------------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF 325 (519)
T ss_pred ---------------------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccCCc
Confidence 25788898 7755544322 4567999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+++.-+.+ ..++.|++++..... -.+.. . .-+..++.++||++++....
T Consensus 326 ~~V~Gs~d-------------r~i~~wdlDgn~~~~---W~gvr-~--------~~v~dlait~Dgk~vl~v~~------ 374 (519)
T KOG0293|consen 326 RFVTGSPD-------------RTIIMWDLDGNILGN---WEGVR-D--------PKVHDLAITYDGKYVLLVTV------ 374 (519)
T ss_pred eeEecCCC-------------CcEEEecCCcchhhc---ccccc-c--------ceeEEEEEcCCCcEEEEEec------
Confidence 98765443 368899999875321 11110 0 12457899999999444432
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
...+++++.+ ...-+.+......+. +..|.||+.+...- .. .++.+.|++.
T Consensus 375 -------d~~i~l~~~e---~~~dr~lise~~~its~~iS~d~k~~LvnL--~~--qei~LWDl~e 426 (519)
T KOG0293|consen 375 -------DKKIRLYNRE---ARVDRGLISEEQPITSFSISKDGKLALVNL--QD--QEIHLWDLEE 426 (519)
T ss_pred -------ccceeeechh---hhhhhccccccCceeEEEEcCCCcEEEEEc--cc--CeeEEeecch
Confidence 2467778776 222232444445556 89999999765533 22 3455556654
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=119.41 Aligned_cols=241 Identities=15% Similarity=0.122 Sum_probs=152.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
+....++..+...||..+...++.+..... .+.+..|+||++||-. + .+...+-..+...+..+||
T Consensus 89 p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGlt-----------g--~S~~~YVr~lv~~a~~~G~ 155 (409)
T KOG1838|consen 89 PPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLT-----------G--GSHESYVRHLVHEAQRKGY 155 (409)
T ss_pred CCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCC-----------C--CChhHHHHHHHHHHHhCCc
Confidence 334455555566688889999887765321 1223579999999942 1 1222333344556677999
Q ss_pred EEEEcCCCCCCCCCCCC--CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEE
Q 004475 556 AVLAGPSIPIIGEGDKL--PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIA 631 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~--~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~ 631 (751)
.++..+.+ |.+++. .+..|.....+|+.+++++++++.. ..++..+|+||||.+...++....+ .+.++++
T Consensus 156 r~VVfN~R---G~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~ 230 (409)
T KOG1838|consen 156 RVVVFNHR---GLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVA 230 (409)
T ss_pred EEEEECCC---CCCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEE
Confidence 99994444 544442 2333444557999999999998753 3589999999999999999987633 3666666
Q ss_pred ccCCCCCCCCccCc-----------------c----------ccc----------c-------------cchh-hHHHHH
Q 004475 632 RSGSYNKTLTPFGF-----------------Q----------TEF----------R-------------TLWE-ATNVYI 660 (751)
Q Consensus 632 ~~~~~d~~~~~~~~-----------------~----------~~~----------~-------------~~~~-~~~~~~ 660 (751)
++..+|.......+ . .+. . .-++ ..+.|.
T Consensus 231 v~~Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~ 310 (409)
T KOG1838|consen 231 VCNPWDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYK 310 (409)
T ss_pred EeccchhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHh
Confidence 66655521000000 0 000 0 0001 134567
Q ss_pred hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc---cHHHHHHH-HHHHH
Q 004475 661 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWE-TDRWL 736 (751)
Q Consensus 661 ~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~-~~~fl 736 (751)
+.++...+++|++|+|.|+..+|+++| .. +.-. +.. ..+..+-+++-..+||.-.... ....++++ +.+|+
T Consensus 311 ~aSs~~~v~~I~VP~L~ina~DDPv~p--~~-~ip~-~~~-~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~ 385 (409)
T KOG1838|consen 311 KASSSNYVDKIKVPLLCINAADDPVVP--EE-AIPI-DDI-KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFL 385 (409)
T ss_pred hcchhhhcccccccEEEEecCCCCCCC--cc-cCCH-HHH-hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHH
Confidence 778889999999999999999999998 32 2112 222 2345788888889999643322 34455666 78888
Q ss_pred HHHh
Q 004475 737 QKYC 740 (751)
Q Consensus 737 ~~~l 740 (751)
.+..
T Consensus 386 ~~~~ 389 (409)
T KOG1838|consen 386 GNAI 389 (409)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=126.40 Aligned_cols=202 Identities=21% Similarity=0.157 Sum_probs=119.0
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCC-CCCCCchhHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEG-DKLPNDRFVEQLVSSAEAA 588 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g-~~~~~~~~~~~~~~d~~~~ 588 (751)
..|.||++||-+ ++...|... ...+.. .|+.|++ .+..|+| .+..+....-...+.+...
T Consensus 57 ~~~pvlllHGF~-----------~~~~~w~~~----~~~L~~~~~~~v~a---iDl~G~g~~s~~~~~~~y~~~~~v~~i 118 (326)
T KOG1454|consen 57 DKPPVLLLHGFG-----------ASSFSWRRV----VPLLSKAKGLRVLA---IDLPGHGYSSPLPRGPLYTLRELVELI 118 (326)
T ss_pred CCCcEEEecccc-----------CCcccHhhh----ccccccccceEEEE---EecCCCCcCCCCCCCCceehhHHHHHH
Confidence 468899999943 111222211 112222 3699999 5555655 2222222212222222233
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE---EccCCCCCCCCc----------c------Cc---c
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI---ARSGSYNKTLTP----------F------GF---Q 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v---~~~~~~d~~~~~----------~------~~---~ 646 (751)
.+.+.+... .++.++|||+||.+|..+|+.+|+.++.++ +..+.+...... . .. .
T Consensus 119 ~~~~~~~~~---~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 195 (326)
T KOG1454|consen 119 RRFVKEVFV---EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSL 195 (326)
T ss_pred HHHHHhhcC---cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCcccc
Confidence 333333332 459999999999999999999999999999 555432210000 0 00 0
Q ss_pred ccc-------------------ccchhhH--------------HHH-------H--hcCcccccCCCC-CCEEEEEcCCC
Q 004475 647 TEF-------------------RTLWEAT--------------NVY-------I--EMSPITHANKIK-KPILIIHGEVD 683 (751)
Q Consensus 647 ~~~-------------------~~~~~~~--------------~~~-------~--~~~~~~~~~~~~-~P~li~~G~~D 683 (751)
... ...+... +.+ . +......++++. +|+|+++|+.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D 275 (326)
T KOG1454|consen 196 TEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKD 275 (326)
T ss_pred ccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcC
Confidence 000 0000000 000 0 012223455666 99999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 684 ~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+.+| .+.+..+.+.+ ..+++++++++||.... +..+.+...+..|+..+.
T Consensus 276 ~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 276 QIVP--LELAEELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred CccC--HHHHHHHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 9999 77666665544 56799999999999874 788899999999998753
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-12 Score=109.87 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=133.4
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC----
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG---- 567 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g---- 567 (751)
-.+..-+|+|+.+..++ +.|++.++.|. .+....|..-. ...+.....|++|+.||.. -+|
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSGL-----------TCT~~Nfi~Ks-g~qq~As~hgl~vV~PDTS-PRG~~v~ 90 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSGL-----------TCTHENFIEKS-GFQQQASKHGLAVVAPDTS-PRGVEVA 90 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecCC-----------cccchhhHhhh-hHHHhHhhcCeEEECCCCC-CCccccC
Confidence 35777888998765544 58999999983 33333333221 1122334679999996652 222
Q ss_pred -CCCCCC---Cch---------hH--HHHHHHH-HHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 568 -EGDKLP---NDR---------FV--EQLVSSA-EAAVEEVV-RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 568 -~g~~~~---~~~---------~~--~~~~~d~-~~~v~~l~-~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
..++.. +.. +. ..++.-+ .+..+-+. ..-.+|+.+++|+||||||+-|+..++++|.+++.+-
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvS 170 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVS 170 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccccccee
Confidence 111100 001 10 0111111 12222222 1235899999999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCccccc---CCCCCCEEEEEcCCCCCCCCChHH-HHHHHHHHHhC-CC
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA---NKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGH-GA 705 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~P~li~~G~~D~~vp~~~~~-~~~~~~~l~~~-~~ 705 (751)
+++|+.+....+|+.....+..-.+...|..+++...+ .....-+||-+|..|++.+ -+. -..+.++.++. ..
T Consensus 171 AFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~--~qLlPe~l~~a~~~~~~~ 248 (283)
T KOG3101|consen 171 AFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA--EQLLPENLLEACKATWQA 248 (283)
T ss_pred ccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh--hhcChHHHHHHhhccccc
Confidence 99999999888887655544444455556666554433 4445669999999998753 111 22334444432 26
Q ss_pred cEEEEEeCCCCCcCCc
Q 004475 706 LSRLVLLPFEHHVYAA 721 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~ 721 (751)
++.++..++-.|.+..
T Consensus 249 ~v~~r~~~gyDHSYyf 264 (283)
T KOG3101|consen 249 PVVFRLQEGYDHSYYF 264 (283)
T ss_pred cEEEEeecCCCcceee
Confidence 7888999999998764
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=120.99 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=113.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. .+..| ..+...|.++||.|++ ++.+|+|.+.... ...++..+++.
T Consensus 18 ~p~vvliHG~~~-----------~~~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~-- 77 (273)
T PLN02211 18 PPHFVLIHGISG-----------GSWCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLI-- 77 (273)
T ss_pred CCeEEEECCCCC-----------CcCcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHH--
Confidence 589999999641 11111 1334466678999999 5666777653221 23334444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---C-----c--------------cCcc
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---T-----P--------------FGFQ 646 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---~-----~--------------~~~~ 646 (751)
+++.+.. ...+++++||||||.+++.++.++|++++++|++++...... . . +...
T Consensus 78 -~~i~~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 78 -DFLSSLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred -HHHHhcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 3443332 136899999999999999999999999999999876421000 0 0 0000
Q ss_pred c--ccccc-h--h---------hH----HHHHh------cCccc------ccCCC-CCCEEEEEcCCCCCCCCChHHHHH
Q 004475 647 T--EFRTL-W--E---------AT----NVYIE------MSPIT------HANKI-KKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 647 ~--~~~~~-~--~---------~~----~~~~~------~~~~~------~~~~~-~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
. ..... . . .+ ..+.. ...+. ...++ ++|+++|.|++|..+| +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 0 0 00 00000 00110 12234 6899999999999998 888777
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+.+.. .+++.++ +||..+ .+..+.+...+.+..
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a 267 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAA 267 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHH
Confidence 7766542 2677886 799865 455666665555543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-10 Score=113.25 Aligned_cols=265 Identities=15% Similarity=0.123 Sum_probs=160.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....|+|||+.|++.. ..+.+++++..+++.......... .+..+.|+|+++.|+....+
T Consensus 11 ~i~~~~~~~~~~~l~~~~----------~~g~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~---- 72 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS----------GDGTIKVWDLETGELLRTLKGHTG----PVRDVAASADGTYLASGSSD---- 72 (289)
T ss_pred CEEEEEEcCCCCEEEEee----------cCcEEEEEEeeCCCcEEEEecCCc----ceeEEEECCCCCEEEEEcCC----
Confidence 578999999999999863 246777778777653332222211 24588999999888877431
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|.++++ ++ ....+..+ ..+..+.|+|+++.
T Consensus 73 ---------------------------------------------~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 73 ---------------------------------------------KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred ---------------------------------------------CeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 46778888 43 44455544 57889999999876
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+.... ...+.+|++.+++...... .....+..+.|+|+++. ++...
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~-l~~~~------- 154 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLR------------GHTDWVNSVAFSPDGTF-VASSS------- 154 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEec------------cCCCcEEEEEEcCcCCE-EEEEc-------
Confidence 665531 2468899998544332211 11123568899999765 44432
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN 347 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 347 (751)
..+.++++++.. +.....+......+. +.|+|+++.|++... ...+.+++...+ ............
T Consensus 155 -----~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~~~~~~~~~~~ 221 (289)
T cd00200 155 -----QDGTIKLWDLRT--GKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTG--KCLGTLRGHENG 221 (289)
T ss_pred -----CCCcEEEEEccc--cccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCC--ceecchhhcCCc
Confidence 235788888741 223333333444566 899999998887763 345677777653 222222111111
Q ss_pred ccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecC
Q 004475 348 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 427 (751)
Q Consensus 348 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 427 (751)
... +.|+|++..++.... ...|+.|+..+++.......... .
T Consensus 222 i~~------~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~~~~~-----------~ 263 (289)
T cd00200 222 VNS------VAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLSGHTN-----------S 263 (289)
T ss_pred eEE------EEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEccccCC-----------c
Confidence 222 779999776655441 23688889887655444332110 1
Q ss_pred CcceeeccCCCEEEEE
Q 004475 428 QGEEDINLNQLKILTS 443 (751)
Q Consensus 428 ~~~~~~s~dg~~l~~~ 443 (751)
...+.|+++++.|+..
T Consensus 264 i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 264 VTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEEECCCCCEEEEe
Confidence 1225788888766654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=117.36 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=151.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|+--|.||||-+ ...++|-|++-.+.....--.+.. ..+..++.||||++|+....+
T Consensus 309 ~I~t~~~N~tGDWiA~g~---------~klgQLlVweWqsEsYVlKQQgH~----~~i~~l~YSpDgq~iaTG~eD---- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGC---------SKLGQLLVWEWQSESYVLKQQGHS----DRITSLAYSPDGQLIATGAED---- 371 (893)
T ss_pred eeeEEEecccCCEEEEcC---------CccceEEEEEeeccceeeeccccc----cceeeEEECCCCcEEEeccCC----
Confidence 678899999999999954 345677777765433211111111 136788999999999987543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
+.+.++|. +| -....+++ ..+..+.|+.+|+.
T Consensus 372 ---------------------------------------------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 372 ---------------------------------------------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ---------------------------------------------CcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 46777787 77 66778888 88999999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+-++.+. .+..||+... ..+.++.. .+.+..+++-.|.|. |+++.+.
T Consensus 407 llssSLDG-------------tVRAwDlkRYrNfRTft~P------------~p~QfscvavD~sGe--lV~AG~~---- 455 (893)
T KOG0291|consen 407 LLSSSLDG-------------TVRAWDLKRYRNFRTFTSP------------EPIQFSCVAVDPSGE--LVCAGAQ---- 455 (893)
T ss_pred EEEeecCC-------------eEEeeeecccceeeeecCC------------CceeeeEEEEcCCCC--EEEeecc----
Confidence 98877654 4667887533 23332211 123344677777787 5554422
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
+.-.||+|+++ +|.....|..+++.+. ++|+|+|..|+-.++..+ -++|-+=...++.++..+. .
T Consensus 456 ------d~F~IfvWS~q--TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~----s 521 (893)
T KOG0291|consen 456 ------DSFEIFVWSVQ--TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR----S 521 (893)
T ss_pred ------ceEEEEEEEee--cCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----c
Confidence 22489999986 3445566677888888 999999999988776543 3666543333212222222 2
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
++.. ++|+|||+.|+....+
T Consensus 522 dvl~------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 522 DVLA------VSFRPDGKELAVATLD 541 (893)
T ss_pred ceeE------EEEcCCCCeEEEEEec
Confidence 2222 8899999999999854
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=108.71 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=133.3
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..|.+.+-. +| .-...+|.|.. ..|+.||+|||.|..++-...+ .....+..+||+|+.
T Consensus 44 r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~cl------------siv~~a~~~gY~vas 102 (270)
T KOG4627|consen 44 RVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMCL------------SIVGPAVRRGYRVAS 102 (270)
T ss_pred chhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhccc------------chhhhhhhcCeEEEE
Confidence 445555542 22 45667777754 1589999999988665433222 223455789999998
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNK 638 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~ 638 (751)
..| +-. ......+..+.++...++|+.+... ..+++.+.|||.|+++|+.+.++. ..++.++++++|+++.
T Consensus 103 vgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l 174 (270)
T KOG4627|consen 103 VGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL 174 (270)
T ss_pred ecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH
Confidence 444 222 2233567889999999999988643 346799999999999999998764 3478999999999873
Q ss_pred CC---CccCcccccccchhhHHHHHhcCc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 004475 639 TL---TPFGFQTEFRTLWEATNVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714 (751)
Q Consensus 639 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 714 (751)
.- ...+ ...+ -..+.....|+ +...+.++.|+|++.+++|.--- +++.+.+...+.++ .+..|++
T Consensus 175 ~EL~~te~g--~dlg---Lt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espkl--ieQnrdf~~q~~~a----~~~~f~n 243 (270)
T KOG4627|consen 175 RELSNTESG--NDLG---LTERNAESVSCDLWEYTDVTVWILVVAAEHESPKL--IEQNRDFADQLRKA----SFTLFKN 243 (270)
T ss_pred HHHhCCccc--cccC---cccchhhhcCccHHHhcCceeeeeEeeecccCcHH--HHhhhhHHHHhhhc----ceeecCC
Confidence 21 1111 0000 00011111111 22356688999999999998765 88999999888754 7889999
Q ss_pred CCCcC
Q 004475 715 EHHVY 719 (751)
Q Consensus 715 ~~H~~ 719 (751)
.+|.-
T Consensus 244 ~~hy~ 248 (270)
T KOG4627|consen 244 YDHYD 248 (270)
T ss_pred cchhh
Confidence 88963
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=118.18 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=121.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchh--HHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF--VEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~v 589 (751)
...+|++||.|-+.+ .| ......|+. .+.|.+ +|..|+|.+..+.-. .+...+.+.+.+
T Consensus 90 ~~plVliHGyGAg~g-----------~f----~~Nf~~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesi 150 (365)
T KOG4409|consen 90 KTPLVLIHGYGAGLG-----------LF----FRNFDDLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESI 150 (365)
T ss_pred CCcEEEEeccchhHH-----------HH----HHhhhhhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHH
Confidence 466889999752110 01 122233344 888988 677788877543211 122233556666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---CCccC------cc----------ccc-
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---LTPFG------FQ----------TEF- 649 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---~~~~~------~~----------~~~- 649 (751)
+..+..-. -.|..|+|||+||++|..+|.++|++++.+++.+|.--.. ..+.. +. +..
T Consensus 151 E~WR~~~~--L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~ 228 (365)
T KOG4409|consen 151 EQWRKKMG--LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLA 228 (365)
T ss_pred HHHHHHcC--CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHH
Confidence 55554433 3589999999999999999999999999999999852111 00000 00 000
Q ss_pred ----ccchh-------hHHHH---------------------------------------HhcCcccccCCCC--CCEEE
Q 004475 650 ----RTLWE-------ATNVY---------------------------------------IEMSPITHANKIK--KPILI 677 (751)
Q Consensus 650 ----~~~~~-------~~~~~---------------------------------------~~~~~~~~~~~~~--~P~li 677 (751)
.-+|. .++.+ +...-++.+..++ +|+++
T Consensus 229 ~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~f 308 (365)
T KOG4409|consen 229 LLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTF 308 (365)
T ss_pred HHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEE
Confidence 00000 00000 0111122233344 99999
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|+|++|..- ...+.++...+. ...++.+++|++||-.. .++.+.+.+.++.+++.
T Consensus 309 iyG~~dWmD---~~~g~~~~~~~~--~~~~~~~~v~~aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 309 IYGDRDWMD---KNAGLEVTKSLM--KEYVEIIIVPGAGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred EecCccccc---chhHHHHHHHhh--cccceEEEecCCCceee-cCCHHHHHHHHHHHHhc
Confidence 999999864 566666666653 34689999999999876 67788888888888764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=103.77 Aligned_cols=271 Identities=13% Similarity=0.191 Sum_probs=157.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+.+.+|+.||.++|--+- +....+|.++ .. +.+...........+..++|+|-..-++++....
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e--~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d--- 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLE--RD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD--- 86 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEec--ch--hhhhhhcccCCCcchhhheeCCCCCcceEEecCC---
Confidence 5789999999999998542 4455666555 33 3333333322233567889998776666663321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i 189 (751)
..+.++|. .|+.. ++.....-..+.|||||+++
T Consensus 87 ---------------------------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 87 ---------------------------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred ---------------------------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 35677777 66443 34333666689999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
++...+. .|-.+|..+-++..- .+.. ..+.+++|+-++. ++|+..
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~--~~~~-----------~e~ne~~w~~~nd--~Fflt~------- 166 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNE--EQFK-----------FEVNEISWNNSND--LFFLTN------- 166 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeeh--hccc-----------ceeeeeeecCCCC--EEEEec-------
Confidence 9875442 455666654433211 1111 1133678984444 455431
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 348 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 348 (751)
.-+.+-++.-.. =+....|..++..+- +.|+|+|++++.++.. ..-.|| |++.- -=.+.++..... +
T Consensus 167 ----GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsAD--AlvSLW--D~~EL-iC~R~isRldwp-V 234 (313)
T KOG1407|consen 167 ----GLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSAD--ALVSLW--DVDEL-ICERCISRLDWP-V 234 (313)
T ss_pred ----CCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeecccc--ceeecc--ChhHh-hhheeeccccCc-e
Confidence 224455544321 123344556666666 9999999999987632 112344 44331 011223332222 2
Q ss_pred cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCC
Q 004475 349 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428 (751)
Q Consensus 349 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 428 (751)
.. ++||.||++|+..+.+. .|-.-+++||.. +|..+-. +.+
T Consensus 235 RT------lSFS~dg~~lASaSEDh---------------------~IDIA~vetGd~--~~eI~~~----~~t------ 275 (313)
T KOG1407|consen 235 RT------LSFSHDGRMLASASEDH---------------------FIDIAEVETGDR--VWEIPCE----GPT------ 275 (313)
T ss_pred EE------EEeccCcceeeccCccc---------------------eEEeEecccCCe--EEEeecc----CCc------
Confidence 22 88999999999988542 566667888853 4443321 111
Q ss_pred cceeeccCCCEEEEEEecCC
Q 004475 429 GEEDINLNQLKILTSKESKT 448 (751)
Q Consensus 429 ~~~~~s~dg~~l~~~~~~~~ 448 (751)
..++|.|....|+|+.....
T Consensus 276 ~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 276 FTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eeEEecCCCceeeEEecCCC
Confidence 22689999999999876554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-10 Score=103.72 Aligned_cols=258 Identities=16% Similarity=0.086 Sum_probs=154.2
Q ss_pred CcceeEEeecCCCCC-CCC-cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 3 FFTGIGIHRLLPDDS-LGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~-~g~-~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
....|.+|+|..|+. -|. .+.+++ ....+.....|+||++..-. .....|.++|+++|+.++..-+
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~G--HsH~v~dv~~s~dg~~alS~----------swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTG--HSHFVSDVVLSSDGNFALSA----------SWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeec--cceEecceEEccCCceEEec----------cccceEEEEEecCCcEEEEEEe
Confidence 345677888877432 232 334553 23368899999999776554 3347888889999987776655
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
... .+..+++|||.+.|+-.+.+ ..|-
T Consensus 104 H~~----dVlsva~s~dn~qivSGSrD-------------------------------------------------kTik 130 (315)
T KOG0279|consen 104 HTK----DVLSVAFSTDNRQIVSGSRD-------------------------------------------------KTIK 130 (315)
T ss_pred cCC----ceEEEEecCCCceeecCCCc-------------------------------------------------ceee
Confidence 543 36789999999999876543 3566
Q ss_pred EEcCCC-CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 161 LGSLDG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~~G-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
+++.-| ..-.+.+. +.+..++|||...-.++.+.. +...+-+||+++-+.+.-
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----------~DktvKvWnl~~~~l~~~------------ 187 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----------WDKTVKVWNLRNCQLRTT------------ 187 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----------CCceEEEEccCCcchhhc------------
Confidence 677734 22233322 568899999997443333322 244678999998766532
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
+.....++..+++||||.. .+... ..++++++|++. +..... ......+. ..|||+--+|+..
T Consensus 188 ~~gh~~~v~t~~vSpDGsl-casGg------------kdg~~~LwdL~~--~k~lys-l~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDGSL-CASGG------------KDGEAMLWDLNE--GKNLYS-LEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred cccccccEEEEEECCCCCE-EecCC------------CCceEEEEEccC--CceeEe-ccCCCeEeeEEecCCceeEeec
Confidence 2223345668999999985 33311 236899999962 222111 12233445 8999988888765
Q ss_pred eeecccceeEEEecCCCCCCcceeeee-cccc-cccCCCCCCCeeeCCCCCEEEEee
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFD-RVFE-NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.. ..|-+.+++++ .....|.. .... .-...+.--.++||+||..|+...
T Consensus 252 t~-----~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 252 TA-----TSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cC-----CceEEEeccch-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 52 12555566664 11111111 1000 000000111288999999987766
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=117.50 Aligned_cols=319 Identities=12% Similarity=0.068 Sum_probs=179.8
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcC--CCCe-eeccCCCCccc---cceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICL---NAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~--~g~~-~~lt~~~~~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..|.+.+|....+ .....-+|+.... .|.. +.|.+.....- ...+..+.+||||++|+|+...+..+
T Consensus 76 ~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e-- 148 (414)
T PF02897_consen 76 RRGGYYYYSRNQG-----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE-- 148 (414)
T ss_dssp EETTEEEEEEE-S-----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS--
T ss_pred EECCeEEEEEEcC-----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCc--
Confidence 4566887766421 1334566666665 3443 44433221100 11234678999999999995543222
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ceEEeeeeCCCCceE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPDQKYV 189 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~~~~~~~SpDG~~i 189 (751)
...|+++|+ +|+. +.+. .....+.|++||+.|
T Consensus 149 ------------------------------------------~~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 149 ------------------------------------------WYTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp ------------------------------------------EEEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEE
T ss_pred ------------------------------------------eEEEEEEECCCCcC--cCCcccccccceEEEeCCCCEE
Confidence 168999999 7732 2222 122249999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+..+....-. ......++|++.+.+.... .|...+.... ....+..|+||++ |++....
T Consensus 185 ~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~----------~~~~~~~s~d~~~-l~i~~~~---- 247 (414)
T PF02897_consen 185 FYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEPF----------WFVSVSRSKDGRY-LFISSSS---- 247 (414)
T ss_dssp EEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT----------SEEEEEE-TTSSE-EEEEEES----
T ss_pred EEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCCc----------EEEEEEecCcccE-EEEEEEc----
Confidence 999876421100 1223578999999876544 4433332211 0226789999998 4443311
Q ss_pred CccccCcccceeeccCCCC--CCCCceEeEee-ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCC-cce-eee
Q 004475 268 ANVEVSPRDIIYTQPAEPA--EGEKPEILHKL-DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APR-VLF 341 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~-~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~-~l~ 341 (751)
.. ....+|++++... .....+.+... .+... +... |..+++.++.......|+.++++.... ... .+.
T Consensus 248 ---~~-~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~ 321 (414)
T PF02897_consen 248 ---GT-SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI 321 (414)
T ss_dssp ---SS-SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE
T ss_pred ---cc-cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEc
Confidence 11 1368999998621 12355666553 33333 3333 777888887666678999999988621 122 333
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC-CCceeEEeeccchhhhhc
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFET 420 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~ 420 (751)
........ -.++..+.+|++.... ....+|.++++. +.....+...... .
T Consensus 322 ~~~~~~~l-------~~~~~~~~~Lvl~~~~------------------~~~~~l~v~~~~~~~~~~~~~~p~~g----~ 372 (414)
T PF02897_consen 322 PEDEDVSL-------EDVSLFKDYLVLSYRE------------------NGSSRLRVYDLDDGKESREIPLPEAG----S 372 (414)
T ss_dssp --SSSEEE-------EEEEEETTEEEEEEEE------------------TTEEEEEEEETT-TEEEEEEESSSSS----E
T ss_pred CCCCceeE-------EEEEEECCEEEEEEEE------------------CCccEEEEEECCCCcEEeeecCCcce----E
Confidence 32211100 2355666677766633 245589999998 4444433322211 1
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
+.. .+..++++.+.|..++...|+.+|.+|+.+++.+.+..
T Consensus 373 v~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 373 VSG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred Eec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 111 34567899999999999999999999999999888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=125.63 Aligned_cols=241 Identities=21% Similarity=0.278 Sum_probs=155.3
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+....+.++..||+++.+.+|+|++ .+++|+++..+=.|+...+ + ..+ ...... .....|+.+||+|
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~--~-~~~--~~~~~~--p~~~~~aa~GYav 83 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRN--G-TFG--PQLSAL--PQPAWFAAQGYAV 83 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccccc--c-cCc--chhhcc--cccceeecCceEE
Confidence 35566778888999999999999987 4679999999833322211 0 000 000000 0113678999999
Q ss_pred EEcCCCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 558 LAGPSIPIIGEGDKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+. .+.+|.+.+++.... ..+..+|..+.|+||.++++.+ .+|+++|.|++|+..+.+|+..|..+++++...+..
T Consensus 84 V~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 84 VN---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred EE---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 99 667787777654322 2257899999999999999876 699999999999999999999998999999988876
Q ss_pred CCCCCc--------------cC-----------ccc-----------------------ccccchhh---------HHHH
Q 004475 637 NKTLTP--------------FG-----------FQT-----------------------EFRTLWEA---------TNVY 659 (751)
Q Consensus 637 d~~~~~--------------~~-----------~~~-----------------------~~~~~~~~---------~~~~ 659 (751)
|..... |. ... ....+|.. .+.|
T Consensus 160 D~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW 239 (563)
T COG2936 160 DRYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFW 239 (563)
T ss_pred cccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchh
Confidence 511000 00 000 00011110 0123
Q ss_pred HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc-----HHHHHHHHHH
Q 004475 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN-----VMHVIWETDR 734 (751)
Q Consensus 660 ~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-----~~~~~~~~~~ 734 (751)
...+......++++|+|++.|=.|.. ...+.+++..+... +..+++-|- .|....... ....++...+
T Consensus 240 ~~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~ 312 (563)
T COG2936 240 RRGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDD 312 (563)
T ss_pred hccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHh
Confidence 33455556778999999999999975 34556677666653 345666665 365433222 2344455566
Q ss_pred HHHHHhc
Q 004475 735 WLQKYCL 741 (751)
Q Consensus 735 fl~~~l~ 741 (751)
||..++.
T Consensus 313 ~l~~~~~ 319 (563)
T COG2936 313 FLDAYLD 319 (563)
T ss_pred hhhHhhh
Confidence 6665554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=110.47 Aligned_cols=138 Identities=23% Similarity=0.291 Sum_probs=95.3
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 114 (751)
.-.|||+|++||-.++ .+|.|.|..+=+..+|...-. -+..+.|+.|+.+|+......
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk~------ 70 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYKD------ 70 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeecc------
Confidence 5689999999999653 589999988877777743321 145679999999988774321
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-C-ceecCCC-ceEEeeeeCCCCceEEE
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~-~~~lt~~-~~~~~~~~SpDG~~i~~ 191 (751)
..+.++++.. + .-.+..+ .++...+|||||+.|+.
T Consensus 71 ------------------------------------------~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 71 ------------------------------------------PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred ------------------------------------------ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 2344445533 1 1234444 77889999999999998
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
++. |...|-+|.+.+.+...+.. ...++..++|.|||++ .+.++.
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~f-~ai~sR 153 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQF-CAILSR 153 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCce-eeeeec
Confidence 753 35678889988775544321 1233457899999998 677663
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=105.35 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=136.4
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..+.+.++.+.+..+-+.+..-. ..-+||++||- .+ .-+ .-+....+..++..||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg--------s~e~vvlcHGf--rS---------~Kn--~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG--------STEIVVLCHGF--RS---------HKN--AIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC--------CceEEEEeecc--cc---------ccc--hHHHHHHHHHHHhcCceEEE
Confidence 34556666666655555333221 24689999993 11 000 01112345577789999999
Q ss_pred cCCCCCCCCCCCCCCchh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+++.|.|++.....+ +...++|+..+++++.... ..=-+++|||-||.+++..+.++++ +.-+|-.+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 788888887553322 3455699999999997632 1224699999999999999999965 677777777665
Q ss_pred CCCCc--------------cCcc------cccccchhhHHHHHhcC-cc--cccC-CCCCCEEEEEcCCCCCCCCChHHH
Q 004475 638 KTLTP--------------FGFQ------TEFRTLWEATNVYIEMS-PI--THAN-KIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 638 ~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
....- -++. ......|.......... .. +.++ ..+||+|-+||..|.+|| .+.+
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 22100 0000 00111111111111110 00 0111 236999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
.++++.+.. ..+.+++|+.|.+...+ .+.....+.|+.-.
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q--~~l~~lgl~f~k~r 258 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ--SQLVSLGLEFIKTR 258 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh--hhHhhhcceeEEee
Confidence 999988875 47999999999986433 23334444444433
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-09 Score=98.39 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=167.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC-----CCCeeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-----TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-----~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+..+++..+++...+| ..+.++++. .|.+.+...+.++ .+..++-|+||++.+-.+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH----~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSH----FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccce----EecceEEccCCceEEeccc
Confidence 677888888888888865432 344444433 3554444444433 4788999999997665543
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC-ceEEeeeeC
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYTAVEPS 183 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~-~~~~~~~~S 183 (751)
+ ..+.++|+ +|+. +++-.+ .++.++++|
T Consensus 84 D-------------------------------------------------~~lrlWDl~~g~~t~~f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 84 D-------------------------------------------------GTLRLWDLATGESTRRFVGHTKDVLSVAFS 114 (315)
T ss_pred c-------------------------------------------------ceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence 2 46888899 6644 445444 788999999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
||.++|+--+.++ .|-+|+.-+...-.+.... ++.-+..+.|+|+... .++++..
T Consensus 115 ~dn~qivSGSrDk-------------Tiklwnt~g~ck~t~~~~~-----------~~~WVscvrfsP~~~~-p~Ivs~s 169 (315)
T KOG0279|consen 115 TDNRQIVSGSRDK-------------TIKLWNTLGVCKYTIHEDS-----------HREWVSCVRFSPNESN-PIIVSAS 169 (315)
T ss_pred CCCceeecCCCcc-------------eeeeeeecccEEEEEecCC-----------CcCcEEEEEEcCCCCC-cEEEEcc
Confidence 9999998655443 5778988776544432221 1233568999999755 3333211
Q ss_pred cCCCCccccCcccceeeccCCCCCCC-CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
....+-+++++ +- .........+.+. +.+||||...++.. ...++++.|++.+ +.+.
T Consensus 170 ----------~DktvKvWnl~---~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~----k~ly 228 (315)
T KOG0279|consen 170 ----------WDKTVKVWNLR---NCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEG----KNLY 228 (315)
T ss_pred ----------CCceEEEEccC---CcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCC----ceeE
Confidence 34577888875 22 2333445566667 99999999877633 2346777777764 2232
Q ss_pred -ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 342 -DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
......+.+ ++|||.--+|.... ...|..||++++....-...+.. +
T Consensus 229 sl~a~~~v~s------l~fspnrywL~~at----------------------~~sIkIwdl~~~~~v~~l~~d~~----g 276 (315)
T KOG0279|consen 229 SLEAFDIVNS------LCFSPNRYWLCAAT----------------------ATSIKIWDLESKAVVEELKLDGI----G 276 (315)
T ss_pred eccCCCeEee------EEecCCceeEeecc----------------------CCceEEEeccchhhhhhcccccc----c
Confidence 233333333 88999987776655 22588899988754322221110 0
Q ss_pred eeeeecCCc--ceeeccCCCEEEEEEe
Q 004475 421 AVALVFGQG--EEDINLNQLKILTSKE 445 (751)
Q Consensus 421 ~~~~~~~~~--~~~~s~dg~~l~~~~~ 445 (751)
...-..++. ..+||+||.+|+.-+.
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeec
Confidence 100001111 2699999999887653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-09 Score=106.97 Aligned_cols=222 Identities=9% Similarity=0.028 Sum_probs=111.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-cee-eeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
.....++++|||++|++.... ...+.+|+++. +.. +.+...++ ..+...+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCC
Confidence 345678999999999887532 24577787752 211 11111110 123456789999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-------EeEeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-------ILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
|++ ++.+.. ..+.|++++++. . +... .+.... ... +.|+|||++++..... ...-.
T Consensus 137 g~~-l~v~~~-----------~~~~v~v~d~~~-~-g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~~-~~~v~ 200 (330)
T PRK11028 137 NRT-LWVPCL-----------KEDRIRLFTLSD-D-GHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNEL-NSSVD 200 (330)
T ss_pred CCE-EEEeeC-----------CCCEEEEEEECC-C-CcccccCCCceecCCCC-CCceEEECCCCCEEEEEecC-CCEEE
Confidence 998 555431 235788888752 1 1111 111122 223 7899999987765432 22233
Q ss_pred EEEecCCCCCCcceeeeecc-cccccCCCCCC-CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 325 TWLVCPGSKDVAPRVLFDRV-FENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
+|.++..++ ..+.+.... .......+..+ .+.++|||++|+.... ....|.+|+++
T Consensus 201 v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------------------~~~~I~v~~i~ 258 (330)
T PRK11028 201 VWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--------------------TASLISVFSVS 258 (330)
T ss_pred EEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--------------------CCCeEEEEEEe
Confidence 444443232 212211111 00000000011 2668999998877541 12256666654
Q ss_pred CCc-eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 403 TGS-KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 403 ~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
... ...+..... ....+..+.++|||++|+.+.... ..-.+|.++..+|..+.+.
T Consensus 259 ~~~~~~~~~~~~~---------~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 259 EDGSVLSFEGHQP---------TETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCCeEEEeEEEe---------ccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCCcEEEcc
Confidence 321 112221110 011234478999999998875332 2334555565566655543
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-12 Score=126.98 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=122.4
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcC-CCCcCcccCCcccCCCCccCCCC-chHHHHHHhCC----eEEEEcCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYP-EDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARR----FAVLAGPSIP 564 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HG-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G----~~v~~~~~~~ 564 (751)
|..+..++|+|+++.+ ..++|+|+++|| .++. .... ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~--~~~~PvlylldG~~~~~---------------~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDP--SKPYPVLYLLDGQSGWF---------------RNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGT--TTTEEEEEEESHTTHHH---------------HHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCC--CCCCEEEEEccCCcccc---------------ccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 5678999999999843 346999999999 3210 0000 01122334443 3444423211
Q ss_pred CC-CCC---------CCCC----CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 565 II-GEG---------DKLP----NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 565 ~~-g~g---------~~~~----~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
.. .++ .... ...+...+. .+++.++.++..+.+.+.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLT---EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHH---THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehh---ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 11 100 0000 111222222 366777777766666669999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCC--------ChHHHHHHHHHHHh
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGL--------FPMQAERFFDALKG 702 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~--------~~~~~~~~~~~l~~ 702 (751)
+++|.++.....|.. .....|.....+..... .....-..++++.+|+.|..... ......++.+.|..
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEAWKENDPFDLIKA-LSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKA 221 (251)
T ss_dssp EESEESETTHCHHHH--STCGHHGGCHHHHHHHH-HHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccccccCc--CCcHHhhhccHHHHhhh-hhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHH
Confidence 999986644222211 11111111111110000 01123357899999999983210 01223334444555
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+.+..++.++| +|.+ ..+...+...+.||
T Consensus 222 ~g~~~~~~~~~G-~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 222 KGIPHTYHVFPG-GHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp EECTTESEEEHS-ESSH---HHHHHHHHHHHHHH
T ss_pred cCCCceEEEecC-ccch---hhHHHHHHHHHhhC
Confidence 667788889985 6764 23556666666664
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.7e-10 Score=118.07 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=161.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....|||||+.++.... + ..+.+..+.+++...+....++ ...+..++|||||+.|+-.+.+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~--~~i~~~~~~~~~~~~~~~l~~h--~~~v~~~~fs~d~~~l~s~s~D---- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------D--GLIRIWKLEGIKSNLLRELSGH--TRGVSDVAFSPDGSYLLSGSDD---- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------C--CcEEEeecccccchhhcccccc--ccceeeeEECCCCcEEEEecCC----
Confidence 4666899999999988642 3 4444445445541111111111 2257899999999988776443
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|+++++ +. ..+.+..+ ..+..++|+|+|+
T Consensus 225 ---------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~ 259 (456)
T KOG0266|consen 225 ---------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN 259 (456)
T ss_pred ---------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC
Confidence 46777777 33 44555555 7788999999996
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.|+..+.+ ..+.+||+.+++..... ......+..++|++||+. |+..+
T Consensus 260 ~i~Sgs~D-------------~tvriWd~~~~~~~~~l------------~~hs~~is~~~f~~d~~~-l~s~s------ 307 (456)
T KOG0266|consen 260 LLVSGSDD-------------GTVRIWDVRTGECVRKL------------KGHSDGISGLAFSPDGNL-LVSAS------ 307 (456)
T ss_pred EEEEecCC-------------CcEEEEeccCCeEEEee------------eccCCceEEEEECCCCCE-EEEcC------
Confidence 55554433 46889999976544321 222334668899999997 55533
Q ss_pred CccccCcccceeeccCCCCCCCC---ceEeEeece--eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDL--RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~--~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+.|.++|+. ++. ...+..... .+. +.|+|+|++|+..... ..+-+.++..+ .......
T Consensus 308 ------~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~~-~~~~~~~ 373 (456)
T KOG0266|consen 308 ------YDGTIRVWDLE---TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD----RTLKLWDLRSG-KSVGTYT 373 (456)
T ss_pred ------CCccEEEEECC---CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----CeEEEEEccCC-cceeeec
Confidence 34688888886 333 233333333 356 8999999998876632 23444444443 1122222
Q ss_pred ecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 342 DRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 342 ~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
..... .+. .. +..+++|++++..+.+ ..++.|+.+++...+.......
T Consensus 374 ~~~~~~~~~---~~--~~~~~~~~~i~sg~~d---------------------~~v~~~~~~s~~~~~~l~~h~~----- 422 (456)
T KOG0266|consen 374 GHSNLVRCI---FS--PTLSTGGKLIYSGSED---------------------GSVYVWDSSSGGILQRLEGHSK----- 422 (456)
T ss_pred ccCCcceeE---ec--ccccCCCCeEEEEeCC---------------------ceEEEEeCCccchhhhhcCCCC-----
Confidence 22111 111 11 3358899988887743 3788999987655333222100
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEE
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYH 454 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~ 454 (751)
......++++..+.++......+..-.+|
T Consensus 423 -----~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 423 -----AAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred -----CceeccccCCCcCeeeecCcCCCceEEEe
Confidence 00112456666666665543334333333
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-08 Score=95.77 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=168.4
Q ss_pred eEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCc
Q 004475 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPK 123 (751)
Q Consensus 44 ~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (751)
+.+|+...++.. +..-.+|.++.++|+...+-..... .....++|+|++++|+.........
T Consensus 3 ~~~YiGtyT~~~---s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~~~~~~~LY~v~~~~~~g------------ 64 (346)
T COG2706 3 QTVYIGTYTKRE---SQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAVNPDQRHLYVVNEPGEEG------------ 64 (346)
T ss_pred eEEEEeeecccC---CCceEEEEEeCcccccchhhhcccc---CCCceEEECCCCCEEEEEEecCCcC------------
Confidence 455665532111 3345666666566664443222211 1246789999999998875432211
Q ss_pred eeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC----CceEEeeeeCCCCceEEEEEecCCc
Q 004475 124 IQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRPY 198 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~----~~~~~~~~~SpDG~~i~~~~~~~~~ 198 (751)
.-.-|.+|- +|..+.+-. ......++.++||++|+...-..
T Consensus 65 --------------------------------gvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-- 110 (346)
T COG2706 65 --------------------------------GVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-- 110 (346)
T ss_pred --------------------------------cEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence 135566776 575554422 23336788999999988765432
Q ss_pred ccccccCCCceeEEEEeCCC-ceeeeec---cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCc
Q 004475 199 SYKVPCARFSQKVQVWTTDG-KLVRELC---DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (751)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~-~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~ 274 (751)
..+-++.+.. +.+..+. .+.+. .|. ...+........+.|||++ |+.... .
T Consensus 111 ----------g~v~v~p~~~dG~l~~~v~~~~h~g~--~p~-~rQ~~~h~H~a~~tP~~~~-l~v~DL-----------G 165 (346)
T COG2706 111 ----------GSVSVYPLQADGSLQPVVQVVKHTGS--GPH-ERQESPHVHSANFTPDGRY-LVVPDL-----------G 165 (346)
T ss_pred ----------ceEEEEEcccCCccccceeeeecCCC--CCC-ccccCCccceeeeCCCCCE-EEEeec-----------C
Confidence 2344444421 3332221 11111 110 0000111335688999998 555431 2
Q ss_pred ccceeeccCCCC--CCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCC
Q 004475 275 RDIIYTQPAEPA--EGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 352 (751)
Q Consensus 275 ~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (751)
.++++++++++. +...+..+..+.+.-.+.|.|+|+..+...+- +..-.+|.++...++.+..+....-..+.....
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 247777777511 11112222222332228899999976665543 233567777776542222222111112222222
Q ss_pred CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCccee
Q 004475 353 GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED 432 (751)
Q Consensus 353 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (751)
+...+..||||+.|+..- + ......++.+|..+|++.-+-..... -..+..+.
T Consensus 245 ~~aaIhis~dGrFLYasN-R-----------------g~dsI~~f~V~~~~g~L~~~~~~~te---------g~~PR~F~ 297 (346)
T COG2706 245 WAAAIHISPDGRFLYASN-R-----------------GHDSIAVFSVDPDGGKLELVGITPTE---------GQFPRDFN 297 (346)
T ss_pred ceeEEEECCCCCEEEEec-C-----------------CCCeEEEEEEcCCCCEEEEEEEeccC---------CcCCccce
Confidence 333477999999876644 2 12233455666667765444222111 01134468
Q ss_pred eccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 433 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 433 ~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
++++|+.|+....... .-.+|.+|-.+|+...+..
T Consensus 298 i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 298 INPSGRFLIAANQKSD-NITVFERDKETGRLTLLGR 332 (346)
T ss_pred eCCCCCEEEEEccCCC-cEEEEEEcCCCceEEeccc
Confidence 9999999888865544 4678999989998776554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-09 Score=106.48 Aligned_cols=233 Identities=10% Similarity=0.127 Sum_probs=134.2
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
..-.|-|..|+| .++..+++.+++......+.....+ .+....+||.|.+|+-.-.
T Consensus 24 ig~dpkgd~ilY-----------~nGksv~ir~i~~~~~~~iYtEH~~----~vtVAkySPsG~yiASGD~--------- 79 (603)
T KOG0318|consen 24 IGGDPKGDNILY-----------TNGKSVIIRNIDNPASVDIYTEHAH----QVTVAKYSPSGFYIASGDV--------- 79 (603)
T ss_pred eccCCCCCeEEE-----------eCCCEEEEEECCCccceeeeccccc----eeEEEEeCCCceEEeecCC---------
Confidence 345688999999 5668999999988765444322222 2567789999998875411
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-----ceEEeeeeCCCCceEE
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-----AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-----~~~~~~~~SpDG~~i~ 190 (751)
.+.+.+++.+++..-|.+. +.+.++.|+.||++|+
T Consensus 80 ----------------------------------------sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 80 ----------------------------------------SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIA 119 (603)
T ss_pred ----------------------------------------cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEE
Confidence 1456667765533333222 6778999999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCc------eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGK------LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
.....++. -..+++||..+. ..+++....+....| .|.++-+-|+. ++|-+
T Consensus 120 avGEGrer---------fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP---------fRi~T~sdDn~--v~ffe--- 176 (603)
T KOG0318|consen 120 AVGEGRER---------FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP---------FRIATGSDDNT--VAFFE--- 176 (603)
T ss_pred EEecCccc---------eeEEEEecCCCccceeeccceeEeeeeccCCCc---------eEEEeccCCCe--EEEee---
Confidence 98766431 245778876532 122222222221112 11222233322 22222
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeE----eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
+.+.... .+..-+. +.|||||.+++... ....++++|-.++ +..-
T Consensus 177 ------------------------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g----sDgki~iyDGktg--e~vg 226 (603)
T KOG0318|consen 177 ------------------------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG----SDGKIYIYDGKTG--EKVG 226 (603)
T ss_pred ------------------------CCCeeeeecccccccceeeEEECCCCCeEEEec----CCccEEEEcCCCc--cEEE
Confidence 1111111 1111234 89999999877644 2358999998885 2222
Q ss_pred eee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 340 LFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 340 l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
... ...+. .+...++||||+++++..+.+. .+.+||+.+.+..+.|
T Consensus 227 ~l~~~~aHk----GsIfalsWsPDs~~~~T~SaDk---------------------t~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 227 ELEDSDAHK----GSIFALSWSPDSTQFLTVSADK---------------------TIKIWDVSTNSLVSTW 273 (603)
T ss_pred EecCCCCcc----ccEEEEEECCCCceEEEecCCc---------------------eEEEEEeeccceEEEe
Confidence 222 11111 1223389999999999888442 5677777776654433
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=106.84 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 574 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~ 574 (751)
...++.|.+ .+.+|+||++||.. ....+ +..+...+++.||+|+.++.+...+..
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~------------~~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL------------LINSW---YSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC------------CCHHH---HHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456778876 56799999999952 11222 346677899999999996644332211
Q ss_pred chhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEccCCCCCCCC
Q 004475 575 DRFVEQLVSSAEAAVEEVVRR--G------VADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~--~------~id~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~d~~~~ 641 (751)
.....+++.+.++|+.+. . .+|-+||+|+|||.||-+|..++..+ +.++++++++.|+-.....
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 134567778888888762 1 25888999999999999999999887 4589999999997421111
Q ss_pred ccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCC---------CCCChHHHHHHHHHHHhCCCcEEEEEe
Q 004475 642 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDK---------VGLFPMQAERFFDALKGHGALSRLVLL 712 (751)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~---------vp~~~~~~~~~~~~l~~~~~~~~~~~~ 712 (751)
.. .. +.. ..+.+ ..-+...|+|++-..-... +| .-.+-.+|++.+ ..+....+.
T Consensus 137 ~~---~~-------P~v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP-~g~n~~~Ff~~~---~~p~~~~v~ 199 (259)
T PF12740_consen 137 SQ---TE-------PPV-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP-AGVNYREFFDEC---KPPSWHFVA 199 (259)
T ss_pred cC---CC-------Ccc-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCC-CCCCHHHHHHhc---CCCEEEEEe
Confidence 00 00 000 00001 1112458999887766642 22 122345566655 356677778
Q ss_pred CCCCCcC
Q 004475 713 PFEHHVY 719 (751)
Q Consensus 713 ~~~~H~~ 719 (751)
++.||.-
T Consensus 200 ~~~GH~d 206 (259)
T PF12740_consen 200 KDYGHMD 206 (259)
T ss_pred CCCCchH
Confidence 8999964
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=124.04 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=96.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEc------C--CCCeeeccCCCCc----cccceeeeeEEecCCc
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGEAKPLFESPDI----CLNAVFGSFVWVNNST 99 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~------~--~g~~~~lt~~~~~----~~~~~~~~~~wspDg~ 99 (751)
.+.-.+|||||++||+-+. +....||-... - +|...-+...... +....+..+.||||+.
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 5778899999999999542 33345555552 0 1111111111100 0011356889999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ce
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AV 176 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~ 176 (751)
+|+-.+.+ ..|.+++. +.+ .+.+-.+ .-
T Consensus 143 ~lvS~s~D-------------------------------------------------nsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 143 LLVSVSLD-------------------------------------------------NSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred EEEEeccc-------------------------------------------------ceEEEEccccceeeeeeeccccc
Confidence 99877443 46777777 553 3444444 66
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
+.++.|.|=||+|+..++++ .|-+|+...=........++.+. ......+.++|||||.+
T Consensus 174 VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~pf~~~------~~~T~f~RlSWSPDG~~- 233 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITKPFEES------PLTTFFLRLSWSPDGHH- 233 (942)
T ss_pred ccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeeccchhhC------CCcceeeecccCCCcCe-
Confidence 77999999999999987765 46677754322322222232211 11234568999999999
Q ss_pred EEEEEeccCCCCccc
Q 004475 257 LYWVEAQDRGDANVE 271 (751)
Q Consensus 257 i~~~~~~~~~~~~~~ 271 (751)
|+...+-+++.....
T Consensus 234 las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIA 248 (942)
T ss_pred ecchhhccCCcceeE
Confidence 777655555444333
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=120.74 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=58.6
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+.++++|+|+++|+.|.++| +..++++.+.++..+..++++++++ .||... .+....+.+.+.+||.+
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 345789999999999999999 9999999988887666789999985 899876 56777888899999875
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=107.15 Aligned_cols=173 Identities=18% Similarity=0.155 Sum_probs=113.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCch-h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPNDR-F-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~~~-~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
.-+.|++ .+-+|||.+-++.. + .+...+|...+++-+++. +..++.++|+|-||..|+.+|+++++.+..+|
T Consensus 70 l~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 3488888 55668887755432 2 345578888888888775 35789999999999999999999999998888
Q ss_pred EccCCCCCCCCc-cC---------cccccccchhh-------HHHHHh----------cC----cccccCCCCCCEEEEE
Q 004475 631 ARSGSYNKTLTP-FG---------FQTEFRTLWEA-------TNVYIE----------MS----PITHANKIKKPILIIH 679 (751)
Q Consensus 631 ~~~~~~d~~~~~-~~---------~~~~~~~~~~~-------~~~~~~----------~~----~~~~~~~~~~P~li~~ 679 (751)
.+.+........ .. +....+.++++ +..+++ .. =...+.+++||+||+|
T Consensus 144 iwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~h 223 (277)
T KOG2984|consen 144 IWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMH 223 (277)
T ss_pred eecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEee
Confidence 877642211100 00 00000111111 001111 00 0123678999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|++|++++ ..++--+. ....-.++.++|.+.|.+. .....++...+++||++
T Consensus 224 G~kDp~~~--~~hv~fi~----~~~~~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 224 GGKDPFCG--DPHVCFIP----VLKSLAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCcCCCCC--CCCccchh----hhcccceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 99999997 45533232 2223458999999999987 55567888899999975
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-10 Score=109.13 Aligned_cols=259 Identities=14% Similarity=0.088 Sum_probs=155.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCc-ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+.++-+++ ..-..|+++--. -.+....|+|+|+..+|++ ....-+|.+|+.+++..++....+.
T Consensus 235 ~~lrifqvDG----k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---------~rrky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 235 GTLRIFQVDG----KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---------GRRKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred CcEEEEEecC----ccChhheeeeeccCccceeeecCCCceEEEec---------ccceEEEEeeccccccccccCCCCc
Confidence 3455666666 444455543222 2578899999999777765 3447899999999988777544433
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
+ ..++..+.-||||++|++... .+.|+++.
T Consensus 302 e-~~~~e~FeVShd~~fia~~G~-------------------------------------------------~G~I~lLh 331 (514)
T KOG2055|consen 302 E-EKSMERFEVSHDSNFIAIAGN-------------------------------------------------NGHIHLLH 331 (514)
T ss_pred c-cchhheeEecCCCCeEEEccc-------------------------------------------------CceEEeeh
Confidence 3 224678899999999988621 16788887
Q ss_pred C-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
. +++. ..+.-.+.+.+++||.||+.|+.... ..++|+||+............+.
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-------------~GeV~v~nl~~~~~~~rf~D~G~----------- 387 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGG-------------TGEVYVWNLRQNSCLHRFVDDGS----------- 387 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-------------CceEEEEecCCcceEEEEeecCc-----------
Confidence 7 6632 22333377889999999999987643 34799999986543332222221
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC-CCCCCCceEeEe---eceeEE-EEEecCCceEEEee
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHK---LDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~---~~~~~~-~~~spdg~~l~~~~ 316 (751)
..-..++.|++|++ ++.-+ ..+.+-+++.+ ...+..++++.. .-..+. +.|++|++.|+..+
T Consensus 388 v~gts~~~S~ng~y-lA~GS------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSY-LATGS------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCce-EEecc------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 11226788999997 55533 23444444432 123445555543 334556 89999999999887
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.... .+-++.+.+- +...+.+....- ....--++|||.|-++++.-
T Consensus 455 ~~~kn--alrLVHvPS~----TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKN--ALRLVHVPSC----TVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hcccc--ceEEEeccce----eeeccCCCCCCc-ccceEEEEecCCCceEEeec
Confidence 54332 3333433331 111111100000 00011178999999998876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-09 Score=108.46 Aligned_cols=301 Identities=10% Similarity=0.033 Sum_probs=151.3
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
.-.+|.+|.++|+...+..... ......++++|++++|+.........
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~---~~~Ps~l~~~~~~~~LY~~~e~~~~~----------------------------- 61 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAE---GENPSWLAVSPDGRRLYVVNEGSGDS----------------------------- 61 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE---SSSECCEEE-TTSSEEEEEETTSSTT-----------------------------
T ss_pred cEEEEEEcCCCCCceEeeeecC---CCCCceEEEEeCCCEEEEEEccccCC-----------------------------
Confidence 3444555557777665532111 00236789999999998885532000
Q ss_pred ccCCccchhhhhhheeeEEEEEcCC-CCceecC----CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFG----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~-G~~~~lt----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
..-..|.++-+ |+.+.+. .......++.+|||++|++..-. ...+.+++
T Consensus 62 --------------g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~------------~g~v~v~~ 115 (345)
T PF10282_consen 62 --------------GGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG------------GGSVSVFP 115 (345)
T ss_dssp --------------TEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT------------TTEEEEEE
T ss_pred --------------CCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc------------CCeEEEEE
Confidence 11234444444 6544432 22444578899999999987543 23566666
Q ss_pred CCC-ceeeee---ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc
Q 004475 216 TDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP 291 (751)
Q Consensus 216 ~~~-~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 291 (751)
++. +.+... ...++. .|..-.........+.++|||++ ++.+.. ..+.|++++++..+ +..
T Consensus 116 l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~-v~v~dl-----------G~D~v~~~~~~~~~-~~l 180 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRF-VYVPDL-----------GADRVYVYDIDDDT-GKL 180 (345)
T ss_dssp ECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSE-EEEEET-----------TTTEEEEEEE-TTS--TE
T ss_pred ccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCE-EEEEec-----------CCCEEEEEEEeCCC-ceE
Confidence 653 333322 111111 11111112233457899999998 555431 23467777775222 122
Q ss_pred eE---e--EeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc--ccccCCCCCCCeeeCCCCC
Q 004475 292 EI---L--HKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF--ENVYSDPGSPMMTRTSTGT 364 (751)
Q Consensus 292 ~~---l--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~spDG~ 364 (751)
.. + ..+.+...+.|+|||++++...+. .+.|..++.+...+..+.+..... ...........+++||||+
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 22 1 112222227899999987766532 234444444421122222211111 0100000112277999999
Q ss_pred EEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec--CCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEE
Q 004475 365 NVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI--NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILT 442 (751)
Q Consensus 365 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 442 (751)
+|+.... ....|..+++ ++|+++.+-..... -..+..++++|||++|++
T Consensus 258 ~lyvsnr--------------------~~~sI~vf~~d~~~g~l~~~~~~~~~---------G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 258 FLYVSNR--------------------GSNSISVFDLDPATGTLTLVQTVPTG---------GKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEEEEC--------------------TTTEEEEEEECTTTTTEEEEEEEEES---------SSSEEEEEE-TTSSEEEE
T ss_pred EEEEEec--------------------cCCEEEEEEEecCCCceEEEEEEeCC---------CCCccEEEEeCCCCEEEE
Confidence 8877662 1235555555 56777655322110 011334689999998887
Q ss_pred EEecCCCCCeEEEEEcCCCceeEee
Q 004475 443 SKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 443 ~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
...... .-.++.+|.++|+++.+.
T Consensus 309 a~~~s~-~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 309 ANQDSN-TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EETTTT-EEEEEEEETTTTEEEEEE
T ss_pred EecCCC-eEEEEEEeCCCCcEEEec
Confidence 654333 345777787888877654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=107.69 Aligned_cols=279 Identities=10% Similarity=0.041 Sum_probs=159.3
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
....++...|+|--..+..... ++..+||-+| |..-..|++..-.. . .+....++|+|+..+|++.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~--------d~~lrifqvD--Gk~N~~lqS~~l~~-f-Pi~~a~f~p~G~~~i~~s~-- 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGL--------DGTLRIFQVD--GKVNPKLQSIHLEK-F-PIQKAEFAPNGHSVIFTSG-- 277 (514)
T ss_pred CcCCceEEEecCCCceEEEecC--------CCcEEEEEec--CccChhheeeeecc-C-ccceeeecCCCceEEEecc--
Confidence 3346889999997766555321 4445555555 44333443221110 1 2557799999995555522
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-----ceEEeeee
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEP 182 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-----~~~~~~~~ 182 (751)
+..-+|.+|+ +++..++... ..+..+..
T Consensus 278 ----------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 278 ----------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred ----------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 1146889999 7776666443 35678999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|||+++|++.... ..|++....+++.. +.... +..++++.|+.||+. |+.+.
T Consensus 312 Shd~~fia~~G~~-------------G~I~lLhakT~eli--~s~Ki-----------eG~v~~~~fsSdsk~-l~~~~- 363 (514)
T KOG2055|consen 312 SHDSNFIAIAGNN-------------GHIHLLHAKTKELI--TSFKI-----------EGVVSDFTFSSDSKE-LLASG- 363 (514)
T ss_pred cCCCCeEEEcccC-------------ceEEeehhhhhhhh--heeee-----------ccEEeeEEEecCCcE-EEEEc-
Confidence 9999999987543 35777776666432 11111 123568999999987 55433
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E--EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S--VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~--~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+++|++++.. . ...... ..++.+ . +..|++|.+|+.++. .+--.||-.+---....++.
T Consensus 364 -----------~~GeV~v~nl~~-~-~~~~rf-~D~G~v~gts~~~S~ng~ylA~GS~--~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 364 -----------GTGEVYVWNLRQ-N-SCLHRF-VDDGSVHGTSLCISLNGSYLATGSD--SGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred -----------CCceEEEEecCC-c-ceEEEE-eecCccceeeeeecCCCceEEeccC--cceEEEeccchhhccCCCCc
Confidence 336899999851 1 122222 223333 3 788999999888773 22223443221111134444
Q ss_pred eeecc--cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhh
Q 004475 340 LFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 417 (751)
Q Consensus 340 l~~~~--~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 417 (751)
+.... ...+.+ ++|+||++.|+..+.. ....|++..+.+-.+-.-|..... .
T Consensus 428 ik~~dNLtt~Its------l~Fn~d~qiLAiaS~~-------------------~knalrLVHvPS~TVFsNfP~~n~-~ 481 (514)
T KOG2055|consen 428 IKTVDNLTTAITS------LQFNHDAQILAIASRV-------------------KKNALRLVHVPSCTVFSNFPTSNT-K 481 (514)
T ss_pred hhhhhhhheeeee------eeeCcchhhhhhhhhc-------------------cccceEEEeccceeeeccCCCCCC-c
Confidence 43211 011111 8899999999888832 234666666654433333332211 1
Q ss_pred hhceeeeecCCcceeeccCCCEEEEEE
Q 004475 418 FETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+.+++. .+|||.|..|++-.
T Consensus 482 vg~vtc-------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 482 VGHVTC-------MAFSPNSGYLAVGN 501 (514)
T ss_pred ccceEE-------EEecCCCceEEeec
Confidence 122222 58999999998864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-10 Score=104.53 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=79.2
Q ss_pred eeeEEEEEcC-CCCceec--CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 155 TTAQLVLGSL-DGTAKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 155 ~~~~l~~~~~-~G~~~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
....||.++. +.....+ ...+.+.+++|||+|+.+++.... .+..+.+||+++.....+...
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~~---- 101 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGTQ---- 101 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecCC----
Confidence 4478999988 4444444 333569999999999999887432 134678899875554443211
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDS 309 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg 309 (751)
....+.|||+|+. |+.+... ...+.|.++|.+ ..+.+.... .... +.|||||
T Consensus 102 -----------~~n~i~wsP~G~~-l~~~g~~---------n~~G~l~~wd~~-----~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 102 -----------PRNTISWSPDGRF-LVLAGFG---------NLNGDLEFWDVR-----KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred -----------CceEEEECCCCCE-EEEEEcc---------CCCcEEEEEECC-----CCEEeeccccCcEEEEEEcCCC
Confidence 1236899999998 6665411 123678889885 233343322 2345 9999999
Q ss_pred ceEEEee
Q 004475 310 LALVNET 316 (751)
Q Consensus 310 ~~l~~~~ 316 (751)
++|+.++
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9998765
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-10 Score=136.76 Aligned_cols=201 Identities=16% Similarity=0.215 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----------hhHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----------RFVEQL 581 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----------~~~~~~ 581 (751)
.|+||++||.+. +...|. ..... ...+|.|++ ++.+|+|.+.... ...+..
T Consensus 1371 ~~~vVllHG~~~-----------s~~~w~----~~~~~-L~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLG-----------TGEDWI----PIMKA-ISGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCC-----------CHHHHH----HHHHH-HhCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 578999999641 111111 22223 345799999 5666777653221 123344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---c---------------
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---F--------------- 643 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~--------------- 643 (751)
.+++...++.+ ..+++.++||||||.+|+.++.++|++++++|++++........ .
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 44444444432 34689999999999999999999999999999887642110000 0
Q ss_pred Ccc---c--ccccchhh----H---------------H----HHHhc------CcccccCCCCCCEEEEEcCCCCCCCCC
Q 004475 644 GFQ---T--EFRTLWEA----T---------------N----VYIEM------SPITHANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 644 ~~~---~--~~~~~~~~----~---------------~----~~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
+.. . .....|.. . . .+... .....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 000 0 00000000 0 0 00000 0112366789999999999998764
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 690 PMQAERFFDALKGHG--------ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~--------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.++.+.+.+.. ..++++++|++||..+ .+....+.+.+.+||...-.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhccc
Confidence 56666776665421 1368999999999876 67788899999999997543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-09 Score=106.11 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=148.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~ 82 (751)
...|++|++.+ ++...... .....+....|+|+++.|++.. ..+.|+++++.+++. ..+.....
T Consensus 30 ~g~i~i~~~~~----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 30 DGTIKVWDLET----GELLRTLK-GHTGPVRDVAASADGTYLASGS----------SDKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred CcEEEEEEeeC----CCcEEEEe-cCCcceeEEEECCCCCEEEEEc----------CCCeEEEEEcCcccceEEEeccCC
Confidence 34688999987 65333221 1222456899999998888863 347888888877543 33322221
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.+..+.|+|+++.|+....+ ..|.++
T Consensus 95 -----~i~~~~~~~~~~~~~~~~~~-------------------------------------------------~~i~~~ 120 (289)
T cd00200 95 -----YVSSVAFSPDGRILSSSSRD-------------------------------------------------KTIKVW 120 (289)
T ss_pred -----cEEEEEEcCCCCEEEEecCC-------------------------------------------------CeEEEE
Confidence 36788999998766655311 467778
Q ss_pred cC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++ +++ ...+..+ ..+..+.|+|+++.|+.... ...+.+||+.+++...... .
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~------------~ 175 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLT------------G 175 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEe------------c
Confidence 87 453 3334433 56889999999887776542 2358899987554332211 1
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|+|+++. +++.. ..+.+.++++.. +.....+......+. +.|+|++..++...
T Consensus 176 ~~~~i~~~~~~~~~~~-l~~~~------------~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 238 (289)
T cd00200 176 HTGEVNSVAFSPDGEK-LLSSS------------SDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLASGS-- 238 (289)
T ss_pred CccccceEEECCCcCE-EEEec------------CCCcEEEEECCC--CceecchhhcCCceEEEEEcCCCcEEEEEc--
Confidence 1123568999999987 55543 135788888741 122222323444566 89999977665543
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
....|++++..++ ............... +.|+|+|+.|+..+
T Consensus 239 --~~~~i~i~~~~~~--~~~~~~~~~~~~i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 --EDGTIRVWDLRTG--ECVQTLSGHTNSVTS------LAWSPDGKRLASGS 280 (289)
T ss_pred --CCCcEEEEEcCCc--eeEEEccccCCcEEE------EEECCCCCEEEEec
Confidence 1246777777653 222222211111112 78999999887766
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-09 Score=93.09 Aligned_cols=267 Identities=8% Similarity=0.008 Sum_probs=162.5
Q ss_pred CCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchh
Q 004475 59 SCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (751)
.+...|.++.+.+|.-.+ +-.... -++.+..+||++.|+...
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~ds-----qVNrLeiTpdk~~LAaa~-------------------------------- 59 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDS-----QVNRLEITPDKKDLAAAG-------------------------------- 59 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcc-----ceeeEEEcCCcchhhhcc--------------------------------
Confidence 566888888998998444 433333 367889999999998762
Q ss_pred hhhccCCccchhhhhhheeeEEEEEcC-CCCceecC---CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEE
Q 004475 138 TDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG---TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (751)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt---~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~ 212 (751)
..+|.++|+ ++...++. .+ ..+..+.|--|||+++..+.+ ..+.
T Consensus 60 ------------------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~k 108 (311)
T KOG0315|consen 60 ------------------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVK 108 (311)
T ss_pred ------------------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEE
Confidence 147888888 66443332 23 678899999999999865443 3577
Q ss_pred EEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce
Q 004475 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (751)
Q Consensus 213 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (751)
+||+..-..+++...... +..+..+|+...||.- . ..+.|+++|+.. .....
T Consensus 109 IWdlR~~~~qR~~~~~sp-------------Vn~vvlhpnQteLis~-d------------qsg~irvWDl~~--~~c~~ 160 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQHNSP-------------VNTVVLHPNQTELISG-D------------QSGNIRVWDLGE--NSCTH 160 (311)
T ss_pred EEeccCcccchhccCCCC-------------cceEEecCCcceEEee-c------------CCCcEEEEEccC--Ccccc
Confidence 899987655555444322 3477889998884333 1 346899999841 22333
Q ss_pred Ee-EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC--CCcceeeeecccccccCCCCCCCeeeCCCCCEEEE
Q 004475 293 IL-HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 368 (751)
Q Consensus 293 ~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~ 368 (751)
++ .+.+..+. +...|||++++...++ ...|..++-+. ....+.++........ .-.-.+|||+|+|+.
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnk----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~----il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNK----GNCYVWRLLNHQTASELEPVHKFQAHNGH----ILRCLLSPDVKYLAT 232 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCC----ccEEEEEccCCCccccceEhhheecccce----EEEEEECCCCcEEEe
Confidence 33 34445566 8899999999876643 35666665443 1222233221111100 001458999999999
Q ss_pred eeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC-ceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC
Q 004475 369 KIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 447 (751)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 447 (751)
.+.++ .+++|+.++- +......... .+ ...++||.||++|+ +.++.
T Consensus 233 ~ssdk---------------------tv~iwn~~~~~kle~~l~gh~--------rW---vWdc~FS~dg~Ylv-Tassd 279 (311)
T KOG0315|consen 233 CSSDK---------------------TVKIWNTDDFFKLELVLTGHQ--------RW---VWDCAFSADGEYLV-TASSD 279 (311)
T ss_pred ecCCc---------------------eEEEEecCCceeeEEEeecCC--------ce---EEeeeeccCccEEE-ecCCC
Confidence 88442 6777777654 2222222111 11 12378999998665 44444
Q ss_pred CCCCeEEEEEcCCCceeE
Q 004475 448 TEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~ 465 (751)
. ...++++..+++.+
T Consensus 280 ~---~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 280 H---TARLWDLSAGKEVR 294 (311)
T ss_pred C---ceeecccccCceee
Confidence 2 34455666666543
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=128.82 Aligned_cols=211 Identities=15% Similarity=0.166 Sum_probs=120.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+-+.+ .|+||++||.+. +...|. .....| .+||.|++ ++.+|+
T Consensus 10 ~~g~~l~~~~~g~~~--------~~~ivllHG~~~-----------~~~~w~----~~~~~L-~~~~~Vi~---~D~~G~ 62 (582)
T PRK05855 10 SDGVRLAVYEWGDPD--------RPTVVLVHGYPD-----------NHEVWD----GVAPLL-ADRFRVVA---YDVRGA 62 (582)
T ss_pred eCCEEEEEEEcCCCC--------CCeEEEEcCCCc-----------hHHHHH----HHHHHh-hcceEEEE---ecCCCC
Confidence 467777766653321 478999999631 111111 223334 68999999 666788
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCCCC---
Q 004475 569 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKT--- 639 (751)
Q Consensus 569 g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d~~--- 639 (751)
|.+.... ....+..+|+..+++.+. . ..++.|+||||||.+++.++... ++.+..+++.++.....
T Consensus 63 G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~ 137 (582)
T PRK05855 63 GRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGF 137 (582)
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHH
Confidence 7764322 235667777777777652 1 23599999999999998777653 33444333333221000
Q ss_pred -----C---CccCcc---cc-----------------------cccchhh-------------------------HHHHH
Q 004475 640 -----L---TPFGFQ---TE-----------------------FRTLWEA-------------------------TNVYI 660 (751)
Q Consensus 640 -----~---~~~~~~---~~-----------------------~~~~~~~-------------------------~~~~~ 660 (751)
. .+.... .. ....+.. ...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (582)
T PRK05855 138 WLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYR 217 (582)
T ss_pred HHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHH
Confidence 0 000000 00 0000000 00000
Q ss_pred hc----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 661 EM----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 661 ~~----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.. .....+..+++|+|+++|++|..+| ......+.+.+. ..++++++ ++|... .+....+...+.+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl 289 (582)
T PRK05855 218 ANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFV 289 (582)
T ss_pred hhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHH
Confidence 00 0001133478999999999999998 777766654432 34677776 589876 566778889999999
Q ss_pred HHH
Q 004475 737 QKY 739 (751)
Q Consensus 737 ~~~ 739 (751)
...
T Consensus 290 ~~~ 292 (582)
T PRK05855 290 DAV 292 (582)
T ss_pred Hhc
Confidence 864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=106.17 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=108.9
Q ss_pred eEEEEEcCCCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
.-+|.+..++. ..++..+ ..+..+.||||.++|+.-..+ ..+.+||+++++.+.++....
T Consensus 248 aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~-------------e~~~lwDv~tgd~~~~y~~~~--- 311 (519)
T KOG0293|consen 248 AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD-------------EVLSLWDVDTGDLRHLYPSGL--- 311 (519)
T ss_pred EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch-------------HheeeccCCcchhhhhcccCc---
Confidence 45777766664 2334444 778899999999999865433 248899999998887655431
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCCc
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDSL 310 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg~ 310 (751)
...+.+++|-|||.+ ++..+ .+..++.++++ |.....-... ...+. ++.++||+
T Consensus 312 --------~~S~~sc~W~pDg~~-~V~Gs------------~dr~i~~wdlD---gn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 312 --------GFSVSSCAWCPDGFR-FVTGS------------PDRTIIMWDLD---GNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred --------CCCcceeEEccCCce-eEecC------------CCCcEEEecCC---cchhhcccccccceeEEEEEcCCCc
Confidence 123458899999999 44422 23578888886 4221111111 12345 88999999
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
+++.... ..++.+++.++. .....+.. ..+.. ++.|-||++++..-.
T Consensus 368 ~vl~v~~----d~~i~l~~~e~~-~dr~lise~~~its---------~~iS~d~k~~LvnL~------------------ 415 (519)
T KOG0293|consen 368 YVLLVTV----DKKIRLYNREAR-VDRGLISEEQPITS---------FSISKDGKLALVNLQ------------------ 415 (519)
T ss_pred EEEEEec----ccceeeechhhh-hhhccccccCceeE---------EEEcCCCcEEEEEcc------------------
Confidence 9876552 246666776653 11112221 22222 678999998777662
Q ss_pred CCCCceeEEEecCCCc
Q 004475 390 EGNIPFLDLFDINTGS 405 (751)
Q Consensus 390 ~~~~~~l~~~d~~~g~ 405 (751)
...+.+||++...
T Consensus 416 ---~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENK 428 (519)
T ss_pred ---cCeeEEeecchhh
Confidence 2368888987443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.9e-09 Score=101.73 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=168.5
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
...++...|+-||..||+- ...+.+.+++..|+...-|-.+.. .+..+.|+-+|.+|+....+
T Consensus 235 nkdVT~L~Wn~~G~~LatG----------~~~G~~riw~~~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD-- 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATG----------SEDGEARIWNKDGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVD-- 297 (524)
T ss_pred cCCcceEEecCCCCeEEEe----------ecCcEEEEEecCchhhhhhhccCC-----ceEEEEEcCCCCEEEeccCC--
Confidence 3467899999999999995 345677788877877777755554 37789999999999876332
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceec-CCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l-t~~-~~~~~~~~SpDG 186 (751)
..+.++|. +|+..+. +.+ ..-.++.|--+.
T Consensus 298 -----------------------------------------------~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 298 -----------------------------------------------GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred -----------------------------------------------ccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 35677888 7854443 333 222467776555
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
++ +.... ...|+++.++.+.+. .+.. ....+..+.|.|.|+- |+-++
T Consensus 331 ~F-~ts~t-------------d~~i~V~kv~~~~P~~t~~G-------------H~g~V~alk~n~tg~L-LaS~S---- 378 (524)
T KOG0273|consen 331 EF-ATSST-------------DGCIHVCKVGEDRPVKTFIG-------------HHGEVNALKWNPTGSL-LASCS---- 378 (524)
T ss_pred eE-eecCC-------------CceEEEEEecCCCcceeeec-------------ccCceEEEEECCCCce-EEEec----
Confidence 43 22221 234667766544332 2222 2233568999999986 45444
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce---------EEEeeeecccceeEEEecCCCCCC
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA---------LVNETWYKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~---------l~~~~~~~~~~~~l~~~~~~~~~~ 335 (751)
....|-++.... +.....+..+...+. ..|||+|.. |+..+ ..+.+-+.|...+
T Consensus 379 --------dD~TlkiWs~~~--~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~g-- 442 (524)
T KOG0273|consen 379 --------DDGTLKIWSMGQ--SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESG-- 442 (524)
T ss_pred --------CCCeeEeeecCC--CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCC--
Confidence 334666666531 233444445554555 889998763 22222 2345666677664
Q ss_pred cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 336 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 336 ~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
.+..........++. ++|||||++|+..+.++ .|..|+.++++..+-...+..
T Consensus 443 v~i~~f~kH~~pVys------vafS~~g~ylAsGs~dg---------------------~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYS------VAFSPNGRYLASGSLDG---------------------CVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred ceeEeeccCCCceEE------EEecCCCcEEEecCCCC---------------------eeEeccccchheeEeecCCCe
Confidence 223333344455555 89999999999988432 678889988876544443321
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
. ....|+.+|+.|....+. ..+.++|+
T Consensus 496 -----I-------fel~Wn~~G~kl~~~~sd----~~vcvldl 522 (524)
T KOG0273|consen 496 -----I-------FELCWNAAGDKLGACASD----GSVCVLDL 522 (524)
T ss_pred -----E-------EEEEEcCCCCEEEEEecC----CCceEEEe
Confidence 1 125789999887766532 23555554
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=108.50 Aligned_cols=191 Identities=24% Similarity=0.221 Sum_probs=117.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEEEeChHHHHHHHHHHhC-
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVA-DPSRIAVGGHSYGAFMTAHLLAHA- 622 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~i-d~~~i~l~G~S~GG~~a~~~a~~~- 622 (751)
.....++++||+|+++|| .|.|............+-|..++.+.+.....+ ...+|+++|+|.||+.+++++...
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 345578899999999555 455553322222233344444554444332122 246899999999999998887543
Q ss_pred ---CCc---eeEEEEccCCCCCCCC-------cc---------C----ccccc---c-----------------------
Q 004475 623 ---PHL---FCCGIARSGSYNKTLT-------PF---------G----FQTEF---R----------------------- 650 (751)
Q Consensus 623 ---p~~---~~~~v~~~~~~d~~~~-------~~---------~----~~~~~---~----------------------- 650 (751)
|+. +.++++.++..|.... .. + ++... .
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 554 6888887776551100 00 0 00000 0
Q ss_pred ------cc--------------hhhH---HHHHhcCc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-C
Q 004475 651 ------TL--------------WEAT---NVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-A 705 (751)
Q Consensus 651 ------~~--------------~~~~---~~~~~~~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~ 705 (751)
.. ...+ ..+.+.+. ...-..-+.|++|.||..|.+|| +..+.++++.+.++| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 00 0000 00111111 00011225899999999999999 999999999999999 8
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
+++++.+++.+|.... .......+.||...|...+
T Consensus 252 ~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAA----FASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhh----hcCcHHHHHHHHHHHCCCC
Confidence 9999999999997532 2234677899999997544
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9e-09 Score=107.41 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=165.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+.||||+.||.-. ..+.|.|+|..+|= ....+.+.. ++..+.|+.+|+.|+..+.+
T Consensus 352 ~i~~l~YSpDgq~iaTG~----------eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA----------EDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEecc----------CCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecC---
Confidence 578899999999999942 33556666765553 233333222 57899999999988877554
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC--ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~--~~~~~~~~SpDG 186 (751)
+.+..+|+ .+ .-+.+|.+ .....++..|-|
T Consensus 414 ----------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 414 ----------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ----------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 35566676 34 55666666 445567777778
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
..+...+.+ ..+|++|+..+|++.. |..+++. +.+++|+|+|+. |+-.+
T Consensus 448 elV~AG~~d------------~F~IfvWS~qTGqllDiLsGHEgP-------------Vs~l~f~~~~~~-LaS~S---- 497 (893)
T KOG0291|consen 448 ELVCAGAQD------------SFEIFVWSVQTGQLLDILSGHEGP-------------VSGLSFSPDGSL-LASGS---- 497 (893)
T ss_pred CEEEeeccc------------eEEEEEEEeecCeeeehhcCCCCc-------------ceeeEEccccCe-EEecc----
Confidence 765544322 4689999999887543 3333333 457899999996 55543
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC-------------
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG------------- 331 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~------------- 331 (751)
+...+.+|++=.. .+..+++. ....+. ++|+|||+.|+.++-. ++..+|-....
T Consensus 498 --------WDkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld--gqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 498 --------WDKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFRPDGKELAVATLD--GQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred --------ccceEEEEEeecc-CceeeeEe-eccceeEEEEcCCCCeEEEEEec--ceEEEEEhhhceeeccccchhhcc
Confidence 4456777776311 12333333 233344 8999999999987732 22233322211
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
++.......+..+... ...--.+.+|+||+.|+... ..+.+.+|++.++-+-+.+.
T Consensus 566 ~gR~~~D~~ta~~sa~---~K~Ftti~ySaDG~~IlAgG---------------------~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 566 GGRKETDRITAENSAK---GKTFTTICYSADGKCILAGG---------------------ESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred ccccccceeehhhccc---CCceEEEEEcCCCCEEEecC---------------------CcccEEEEECchhheeeeEE
Confidence 1100001111111000 00001278999999887755 44588999998887666665
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
...+ -|.||-...+.....+..+.+-++|-
T Consensus 622 iS~N-----------------~sLdg~~efln~rkmtEfG~~~LiD~ 651 (893)
T KOG0291|consen 622 ISDN-----------------RSLDGVLEFLNRRKMTEFGNMDLIDT 651 (893)
T ss_pred eccc-----------------cchhHHHHHhccccccccCCcccccc
Confidence 4432 23344444455555666667777774
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-09 Score=110.43 Aligned_cols=250 Identities=13% Similarity=0.175 Sum_probs=156.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..+|+|+..+ |+.+.|..+. ...+....|+|||+.||.- ...+.|.|+|....+..+-..+. +
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG----------~~~g~v~iwD~~~~k~~~~~~~~-h- 259 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVG----------TSDGTVQIWDVKEQKKTRTLRGS-H- 259 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEe----------ecCCeEEEEehhhccccccccCC-c-
Confidence 4799999999 9999988654 3468999999999999984 34577788887654432222221 1
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
...+..++|. +..+...+.+ ..|...|+
T Consensus 260 -~~rvg~laW~--~~~lssGsr~-------------------------------------------------~~I~~~dv 287 (484)
T KOG0305|consen 260 -ASRVGSLAWN--SSVLSSGSRD-------------------------------------------------GKILNHDV 287 (484)
T ss_pred -CceeEEEecc--CceEEEecCC-------------------------------------------------CcEEEEEE
Confidence 1146788997 4444443221 23444444
Q ss_pred -CC-C-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCC
Q 004475 165 -DG-T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 -~G-~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~ 239 (751)
.. . ...+..+ ..+....|++||++++--.. .+.+++||....+ ...+..+.
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn-------------DN~~~Iwd~~~~~p~~~~~~H~----------- 343 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN-------------DNVVFIWDGLSPEPKFTFTEHT----------- 343 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCC-------------ccceEeccCCCccccEEEeccc-----------
Confidence 22 2 2224434 67889999999999986433 3468899984432 33333333
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
..+..++|+|=.+.+|+.... . ....|..++.. .+...........+. +.||+..+-|+.+...
T Consensus 344 --aAVKA~awcP~q~~lLAsGGG-----s-----~D~~i~fwn~~---~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 344 --AAVKALAWCPWQSGLLATGGG-----S-----ADRCIKFWNTN---TGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred --eeeeEeeeCCCccCceEEcCC-----C-----cccEEEEEEcC---CCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 335688999999984444221 1 23478888764 333333334455666 9999999999988865
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
....-.||.++.-. ....+..+... +.. +++||||..|+..+.+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~gH~~R-Vl~------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELLGHTSR-VLY------LALSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEEEEeccccc---eeeeecCCcce-eEE------EEECCCCCEEEEeccc
Confidence 55556788776522 11222222211 222 7899999999998844
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-10 Score=114.75 Aligned_cols=187 Identities=18% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC-----C-----C-------
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD-----K-----L------- 572 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~-----~-----~------- 572 (751)
+++|+|||.||.+ +....+...+..||++||+|++++.++..+... . .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 4599999999963 223334577889999999999977766543210 0 0
Q ss_pred -------C----Cchh------HHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 004475 573 -------P----NDRF------VEQLVSSAEAAVEEVVRR--------------------GVADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 573 -------~----~~~~------~~~~~~d~~~~v~~l~~~--------------------~~id~~~i~l~G~S~GG~~a 615 (751)
. ...+ ...-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 0 0000 111246677777777641 23567889999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHH
Q 004475 616 AHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
+.++.+. .+++++|++.|..-.. . .+ ....++.|+|+|+.+. ... ......
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~~Pl----~--~~------------------~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWMFPL----G--DE------------------IYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES---TTS-------GG------------------GGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcccCC----C--cc------------------cccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9988888 7899999999864211 0 00 0134678999999875 332 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCc-----cc-------------c----HHHHHHHHHHHHHHHhc
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAA-----RE-------------N----VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~-----~~-------------~----~~~~~~~~~~fl~~~l~ 741 (751)
+.+ +........+..+.|+.|.-.. .+ . .+...+.+++||+++|+
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3334456789999999995211 00 1 23346678999999987
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=118.09 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+.+|++||||+++||+..... ...++..+||+.+. +++.+++|.+.. ...+.|||||++|+|.+......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~--~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR--GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecC--CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcceE
Confidence 5789999999999999986332 12246689999996 666788887653 46789999999999985421100
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCCceEEeeeeCCCCceEE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
. ... .....++|++++++ +.++ .-...+.++.|||||++|+
T Consensus 422 ~-------------v~~------------------------~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 422 R-------------VIR------------------------DPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred E-------------Eec------------------------cCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 0 000 00125899999854 5554 2236788999999999999
Q ss_pred EEEecCCcccccccCCCceeEEE---EeCCCceeeeeccCCCCCCCCCccCCccCC-CceeeeecCCCceEEEEEeccCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQV---WTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
|... .+|++ ...++++ ..|+... .+...... ...+.|.+|+.- ++..+ +
T Consensus 464 ~i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~-------~l~~~l~~~~~~l~W~~~~~L-~V~~~---~- 516 (591)
T PRK13616 464 MIIG--------------GKVYLAVVEQTEDGQ-YALTNPR-------EVGPGLGDTAVSLDWRTGDSL-VVGRS---D- 516 (591)
T ss_pred EEEC--------------CEEEEEEEEeCCCCc-eeecccE-------EeecccCCccccceEecCCEE-EEEec---C-
Confidence 9862 14565 5545554 3332210 01111111 246799999983 43322 1
Q ss_pred CCccccCcccceeeccCC
Q 004475 267 DANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~ 284 (751)
....++.++++
T Consensus 517 -------~~~~v~~v~vD 527 (591)
T PRK13616 517 -------PEHPVWYVNLD 527 (591)
T ss_pred -------CCCceEEEecC
Confidence 12358888886
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=100.81 Aligned_cols=151 Identities=13% Similarity=0.261 Sum_probs=95.6
Q ss_pred ccceeecCCCCeEEEEEee--cccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRV--DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~--~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.....|+|+|++|++...+ ++.....-+..+||.++..+.....+.-.... .+..++|||+|+.++......
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~~-- 81 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGSM-- 81 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEccC--
Confidence 3457899999999998863 21111123467999998877665555322221 378999999999988763210
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC-ceecCCCceEEeeeeCCCCceE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~-~~~lt~~~~~~~~~~SpDG~~i 189 (751)
...+.++++.++ ...+. ......+.|||+|++|
T Consensus 82 ---------------------------------------------~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 82 ---------------------------------------------PAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFL 115 (194)
T ss_pred ---------------------------------------------CcccEEEcCcccEeEeec-CCCceEEEECCCCCEE
Confidence 024555565552 23332 2344578999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
++....+ ...+|.+||.+..+....... .....+.|||||++++..
T Consensus 116 ~~~g~~n----------~~G~l~~wd~~~~~~i~~~~~--------------~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 116 VLAGFGN----------LNGDLEFWDVRKKKKISTFEH--------------SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEEEccC----------CCcEEEEEECCCCEEeecccc--------------CcEEEEEEcCCCCEEEEE
Confidence 9976432 246789999985543321111 123478999999994444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=95.28 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=146.7
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeec-CCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
.++|+++|.++++.......... -.. ..||||+.|+.... -.+... +
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~~-----------------G--------- 73 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIAR-----------------G--------- 73 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecccccccc-----------------C---------
Confidence 38999999998874332222211 122 48999999987743 111110 0
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC--------ceEEeeeeCCCCceEEEEEecCCcccccccCCCce
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQ 209 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~ 209 (751)
.+...|-++|+ +++ ..+|.-+ .....+++|||||+|++..... ..
T Consensus 74 --------------~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~ 128 (352)
T TIGR02658 74 --------------KRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SP 128 (352)
T ss_pred --------------CCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CC
Confidence 01246777888 663 3334322 1223789999999999864331 34
Q ss_pred eEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCC
Q 004475 210 KVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (751)
Q Consensus 210 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (751)
.+-++|+.+++...-...+..... +.. .....+...+||+. +.+.... .+....
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~v---y~t--~e~~~~~~~~Dg~~-~~v~~d~-----------~g~~~~--------- 182 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHI---FPT--ANDTFFMHCRDGSL-AKVGYGT-----------KGNPKI--------- 182 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEE---EEe--cCCccEEEeecCce-EEEEecC-----------CCceEE---------
Confidence 678899987765432122211000 000 00112233455544 2222111 011000
Q ss_pred CceEeEee--ceeEE-EEEec-CCceEEEeeeecccceeEEEecCCCCCCccee---e-eecccccccCCCCCCCeeeCC
Q 004475 290 KPEILHKL--DLRFS-VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRV---L-FDRVFENVYSDPGSPMMTRTS 361 (751)
Q Consensus 290 ~~~~l~~~--~~~~~-~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---l-~~~~~~~~~~~~~~~~~~~sp 361 (751)
....+... ..... |.+++ ||++++.+.+ ..|+.+|+.+....... + +......-|.-.+...++++|
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 00111111 11123 55677 7876655442 58999997663111111 1 111111111111111177899
Q ss_pred CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEE
Q 004475 362 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 362 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 441 (751)
||+.|+...+. +...++...-.+|+++|+++++.......... ...+++||||+-++
T Consensus 258 dg~~lyV~~~~-----------~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~------------~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 ARDRIYLLADQ-----------RAKWTHKTASRFLFVVDAKTGKRLRKIELGHE------------IDSINVSQDAKPLL 314 (352)
T ss_pred CCCEEEEEecC-----------CccccccCCCCEEEEEECCCCeEEEEEeCCCc------------eeeEEECCCCCeEE
Confidence 99988875532 11122233345899999999877554443221 22358999999555
Q ss_pred EEEecCCCCCeEEEEEcCCCcee
Q 004475 442 TSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 442 ~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
|..... ...+.++|+.+++..
T Consensus 315 yvtn~~--s~~VsViD~~t~k~i 335 (352)
T TIGR02658 315 YALSTG--DKTLYIFDAETGKEL 335 (352)
T ss_pred EEeCCC--CCcEEEEECcCCeEE
Confidence 544322 345999999888644
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=108.41 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=103.3
Q ss_pred HHHcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---------CCccCcccccccchh-h-HHH
Q 004475 592 VVRRGVADP--SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---------LTPFGFQTEFRTLWE-A-TNV 658 (751)
Q Consensus 592 l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~---------~~~~~~~~~~~~~~~-~-~~~ 658 (751)
+.+....+. ++.+|+||||||+-|+.+|+++|++|+.+.+++|+++.. ...++...... .|. . ...
T Consensus 141 ~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~ 219 (316)
T COG0627 141 WEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPA 219 (316)
T ss_pred HHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCcccc
Confidence 333333444 389999999999999999999999999999999998865 33222211111 111 1 113
Q ss_pred HHhcCcccccCC--------------CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 659 YIEMSPITHANK--------------IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 659 ~~~~~~~~~~~~--------------~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
+.++++...+++ ...++++-+|..|.+........+.+.+++.+.|.+..+...++..|.+..
T Consensus 220 w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~--- 296 (316)
T COG0627 220 WQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF--- 296 (316)
T ss_pred ccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---
Confidence 344444444432 457788889999987520133478899999999999999999889998643
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 004475 725 VMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 725 ~~~~~~~~~~fl~~~l~~ 742 (751)
+...+..++.|+...+..
T Consensus 297 w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 297 WASQLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 667888999999988763
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=104.24 Aligned_cols=248 Identities=8% Similarity=0.032 Sum_probs=142.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCC--CCeEEEEEeecccccccCCceeEEEEEcCCC-CeeeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-~~~~lt~~~ 81 (751)
..+.+|+..+ .+..+.- ......+....|+|. +..||..+. ++...|| ++++. ....|+...
T Consensus 197 G~~kvW~~~~----~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~--------Dgtvklw--~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 197 GLVKVWSVPQ----CNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASA--------DGTVKLW--KLSQETPLQDLEGHL 261 (459)
T ss_pred CceeEeecCC----cceeEEE-eccccceeeEEEccCCCccceeeecc--------CCceeee--ccCCCcchhhhhcch
Confidence 3467788877 6544322 122336889999998 567777643 4445555 44442 234444333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .+..++|.|+|++|...+.+ .+..|
T Consensus 262 ~-----RVs~VafHPsG~~L~TasfD-----------------------------------------------~tWRl-- 287 (459)
T KOG0272|consen 262 A-----RVSRVAFHPSGKFLGTASFD-----------------------------------------------STWRL-- 287 (459)
T ss_pred h-----hheeeeecCCCceeeecccc-----------------------------------------------cchhh--
Confidence 2 36789999999999987553 11333
Q ss_pred EcC-CCCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +++.-.+..+ ..+.+++|.|||..++.-..+. --.+||+.++...-+ +.
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-------------~~RvWDlRtgr~im~------------L~ 342 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-------------LGRVWDLRTGRCIMF------------LA 342 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccc-------------hhheeecccCcEEEE------------ec
Confidence 466 4433223333 7788999999998766543332 234899987754322 22
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
..-..+..++|||+|-. |+-.+ ..+...++|+.. -.....+......++ +.|+|++.+++.++.
T Consensus 343 gH~k~I~~V~fsPNGy~-lATgs------------~Dnt~kVWDLR~--r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYH-LATGS------------SDNTCKVWDLRM--RSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ccccceeeEeECCCceE-EeecC------------CCCcEEEeeecc--cccceecccccchhhheEecccCCeEEEEcc
Confidence 22334668999999977 54433 224566666631 112344445555566 899996544444442
Q ss_pred ecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+ ..-.||. ..+. ...+.|. +....+.+ +..|+||.+++..+.+
T Consensus 408 yD-~t~kiWs--~~~~-~~~ksLa-GHe~kV~s------~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 408 YD-NTVKIWS--TRTW-SPLKSLA-GHEGKVIS------LDISPDSQAIATSSFD 451 (459)
T ss_pred cC-cceeeec--CCCc-ccchhhc-CCccceEE------EEeccCCceEEEeccC
Confidence 22 2234553 3342 2223333 33333333 6689999999888744
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-08 Score=88.85 Aligned_cols=266 Identities=11% Similarity=0.114 Sum_probs=160.3
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.++....||+|+++|+-.+ ..+.|.|+|.-+.........+.. .+..+++||.|+.||....+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaS----------qDGklIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLdN-- 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSAS----------QDGKLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLDN-- 119 (343)
T ss_pred cceeeeEecCCcCeEEeec----------cCCeEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcCc--
Confidence 3688999999999998864 346788889877654444333332 467889999999999873321
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CC---CceecCCC-ceEEeeeeC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG---TAKDFGTP-AVYTAVEPS 183 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G---~~~~lt~~-~~~~~~~~S 183 (751)
.-.||-+.. +| ..+.|..+ +.+....|-
T Consensus 120 ---------------------------------------------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 120 ---------------------------------------------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred ---------------------------------------------eeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence 134554443 33 22345555 666788888
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc-CCCCCCCCCccCCccCCCceeeeec-CCCceEEEEE
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVE 261 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~ 261 (751)
+|+. |+..+.+ ...-+||+++++..+... +.+. +-.++++| |++. .+-..
T Consensus 155 dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~GH~gD-------------V~slsl~p~~~nt-FvSg~ 206 (343)
T KOG0286|consen 155 DDNH-ILTGSGD-------------MTCALWDIETGQQTQVFHGHTGD-------------VMSLSLSPSDGNT-FVSGG 206 (343)
T ss_pred CCCc-eEecCCC-------------ceEEEEEcccceEEEEecCCccc-------------EEEEecCCCCCCe-EEecc
Confidence 7775 4444322 346689999876554332 2222 44778999 8886 22211
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
-....+++|+- .+...+.....+..+. +.|-|+|..++..+. ...-++|-+..+-. ..+
T Consensus 207 ------------cD~~aklWD~R--~~~c~qtF~ghesDINsv~ffP~G~afatGSD--D~tcRlyDlRaD~~----~a~ 266 (343)
T KOG0286|consen 207 ------------CDKSAKLWDVR--SGQCVQTFEGHESDINSVRFFPSGDAFATGSD--DATCRLYDLRADQE----LAV 266 (343)
T ss_pred ------------cccceeeeecc--CcceeEeecccccccceEEEccCCCeeeecCC--CceeEEEeecCCcE----Eee
Confidence 12356667763 1445566666777888 999999998887663 33346665555442 223
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
+...... .+...++||..|+.|+....+ ....+||.-.++..-+....++ +
T Consensus 267 ys~~~~~----~gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~GHeN----R 317 (343)
T KOG0286|consen 267 YSHDSII----CGITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLAGHEN----R 317 (343)
T ss_pred eccCccc----CCceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEeeccCC----e
Confidence 3221111 122227899999877665522 2677889766665444333221 2
Q ss_pred eeeeecCCcceeeccCCCEEE
Q 004475 421 AVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~ 441 (751)
+.- ...+|||--+.
T Consensus 318 vSc-------l~~s~DG~av~ 331 (343)
T KOG0286|consen 318 VSC-------LGVSPDGMAVA 331 (343)
T ss_pred eEE-------EEECCCCcEEE
Confidence 333 36788885443
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=105.63 Aligned_cols=208 Identities=14% Similarity=0.072 Sum_probs=83.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC-CCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
.-+|||+-|-+ +++. ...+...++..+...||.|+.+.-. .+.|+|- ...++.++|+.++|+
T Consensus 33 ~~~llfIGGLt-----------DGl~-tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~-----~SL~~D~~eI~~~v~ 95 (303)
T PF08538_consen 33 PNALLFIGGLT-----------DGLL-TVPYLPDLAEALEETGWSLFQVQLSSSYSGWGT-----SSLDRDVEEIAQLVE 95 (303)
T ss_dssp SSEEEEE--TT-------------TT--STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHH
T ss_pred CcEEEEECCCC-----------CCCC-CCchHHHHHHHhccCCeEEEEEEecCccCCcCc-----chhhhHHHHHHHHHH
Confidence 34799997743 2211 1223345566666689999873332 2455554 356777999999999
Q ss_pred HHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEccCCCCCCCCccCccc-cc-------------
Q 004475 591 EVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAP-----HLFCCGIARSGSYNKTLTPFGFQT-EF------------- 649 (751)
Q Consensus 591 ~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~~~v~~~~~~d~~~~~~~~~~-~~------------- 649 (751)
||+... .-..++|+|+|||-|..-++.++.+.. ..+.++|+.+|+.|+......... +.
T Consensus 96 ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~ 175 (303)
T PF08538_consen 96 YLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIA 175 (303)
T ss_dssp HHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHH
T ss_pred HHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHH
Confidence 999873 124689999999999999999997652 569999999999986654432211 00
Q ss_pred ------------------ccchhhHHHHHhcC----------------cccccCCCCCCEEEEEcCCCCCCCCChHHHHH
Q 004475 650 ------------------RTLWEATNVYIEMS----------------PITHANKIKKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 650 ------------------~~~~~~~~~~~~~~----------------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
..+....+++...+ ......++..|+|++.+++|..|| +....++
T Consensus 176 ~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP-~~vdk~~ 254 (303)
T PF08538_consen 176 EGKGDEILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP-PWVDKEA 254 (303)
T ss_dssp CT-TT-GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------
T ss_pred cCCCCceeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec-ccccccc
Confidence 00000000100000 112345678899999999999998 2233455
Q ss_pred HHHHHHhCCCc----EEEEEeCCCCCcCCcccc---HHHHHHHHHHHHH
Q 004475 696 FFDALKGHGAL----SRLVLLPFEHHVYAAREN---VMHVIWETDRWLQ 737 (751)
Q Consensus 696 ~~~~l~~~~~~----~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~ 737 (751)
+.++++.+-.+ -...++||++|.+..... .+...+++..||+
T Consensus 255 Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 255 LLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 66666543222 234689999999865433 2356677777763
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-09 Score=122.33 Aligned_cols=234 Identities=14% Similarity=0.102 Sum_probs=135.7
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC-chHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
.+.-+-|.|......++...|.||++||.+. ....|.... ..+...|+++||.|+++|. +..+....
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~-----------~~~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~~~~ 115 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMM-----------SADMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDKVEG 115 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCC-----------CccceecCCcccHHHHHHHCCCEEEEEcC-CCCChhHc
Confidence 4566667665421111112478999999531 112222110 1135678899999999663 22111000
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCC-ccC-----
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLT-PFG----- 644 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~~-~~~----- 644 (751)
.......+.+..+.++++.+++.. .+++.++||||||.+++.+++.+ +++++.+|++++..|.... +..
T Consensus 116 -~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~ 191 (994)
T PRK07868 116 -GMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGL 191 (994)
T ss_pred -CccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhh
Confidence 001122333455666666665543 24799999999999999888754 5589999887766542110 000
Q ss_pred -----------------cccc-----------------c----------c--------------cch-hh-----H---H
Q 004475 645 -----------------FQTE-----------------F----------R--------------TLW-EA-----T---N 657 (751)
Q Consensus 645 -----------------~~~~-----------------~----------~--------------~~~-~~-----~---~ 657 (751)
.+.. . . ..| .. . .
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~ 271 (994)
T PRK07868 192 AAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLK 271 (994)
T ss_pred hhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHH
Confidence 0000 0 0 001 00 0 0
Q ss_pred HHHh-cCcc----------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEE-EEeCCCCCcCCc--cc
Q 004475 658 VYIE-MSPI----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL-VLLPFEHHVYAA--RE 723 (751)
Q Consensus 658 ~~~~-~~~~----------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~H~~~~--~~ 723 (751)
.+.. .... ..+.++++|+|+++|++|.++| +..++.+.+.+.. .++ .+++++||.... ..
T Consensus 272 ~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~ 345 (994)
T PRK07868 272 QFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSR 345 (994)
T ss_pred HHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechh
Confidence 0110 0011 1357889999999999999999 8888888776543 345 577899998533 34
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCC
Q 004475 724 NVMHVIWETDRWLQKYCLSNTSDGK 748 (751)
Q Consensus 724 ~~~~~~~~~~~fl~~~l~~~~~~~~ 748 (751)
...+.+..+.+||.++-.....+.+
T Consensus 346 a~~~~wp~i~~wl~~~~~~~~~~~~ 370 (994)
T PRK07868 346 AAQQTWPTVADWVKWLEGDGDKPEN 370 (994)
T ss_pred hhhhhChHHHHHHHHhccCCCCCcc
Confidence 4667899999999998766555544
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-09 Score=94.09 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCE
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPI 675 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 675 (751)
..++.+||++-|+||||.+|+.++..+|..+.+++..+++......... . | -+ ..+ .+|+
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~--~-----~---------~~---~~~-~~~i 147 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLP--G-----W---------LP---GVN-YTPI 147 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhcc--C-----C---------cc---ccC-cchh
Confidence 3478899999999999999999999998888888888886542221110 0 0 00 001 6899
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++.||+.|++|| ..-..+..+.|+..+.+++++.|++.+|.... +-+.++..|+.+
T Consensus 148 ~~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 148 LLCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred heecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999999998753 556778888876
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=111.85 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCC-CCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
.++-+-|.|.... ...+.||++||.. ....-+.- -...+..+|+++||.|++++ .+|.|.+
T Consensus 173 ~~eLi~Y~P~t~~----~~~~PlLiVp~~i-----------~k~yilDL~p~~Slv~~L~~qGf~V~~iD---wrgpg~s 234 (532)
T TIGR01838 173 LFQLIQYEPTTET----VHKTPLLIVPPWI-----------NKYYILDLRPQNSLVRWLVEQGHTVFVIS---WRNPDAS 234 (532)
T ss_pred cEEEEEeCCCCCc----CCCCcEEEECccc-----------ccceeeecccchHHHHHHHHCCcEEEEEE---CCCCCcc
Confidence 4677777775421 1245688888841 11111110 01246778899999999944 4455544
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHHhC-CCceeEEEEccCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLAHA-PHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~~~-p~~~~~~v~~~~~~d 637 (751)
.......+-..+++.++++.+++.. +..++.++||||||.+++. +++.. +++++++++++...|
T Consensus 235 ~~~~~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 235 QADKTFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLD 303 (532)
T ss_pred cccCChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcC
Confidence 3322222233355778888887653 4578999999999998632 34444 678999998888766
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-09 Score=87.13 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCC-CCchHHHHHHhCCeEEEE--cCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLA--GPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~v~~--~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
-+||+.||.|-. +.. .....+..|+.+|+.|+. .+|+..+-.|...++... ...-...+.++
T Consensus 15 ~tilLaHGAGas--------------mdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~-~t~~~~~~~~~ 79 (213)
T COG3571 15 VTILLAHGAGAS--------------MDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGS-GTLNPEYIVAI 79 (213)
T ss_pred EEEEEecCCCCC--------------CCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCcc-ccCCHHHHHHH
Confidence 468889997521 111 122456688899999987 444333334432222111 11122233455
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccC
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN 669 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (751)
..|++. .+..++++-|+||||.++.+++..--..+.++++++=.+. +.+.+.. -...++.
T Consensus 80 aql~~~--l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfh----ppGKPe~--------------~Rt~HL~ 139 (213)
T COG3571 80 AQLRAG--LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFH----PPGKPEQ--------------LRTEHLT 139 (213)
T ss_pred HHHHhc--ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccC----CCCCccc--------------chhhhcc
Confidence 555554 3456899999999999999998654344777777653322 2222211 1235678
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
.+++|+||.||+.|.+-. .+++ ... ....+++++++.++.|..-
T Consensus 140 gl~tPtli~qGtrD~fGt--r~~V---a~y--~ls~~iev~wl~~adHDLk 183 (213)
T COG3571 140 GLKTPTLITQGTRDEFGT--RDEV---AGY--ALSDPIEVVWLEDADHDLK 183 (213)
T ss_pred CCCCCeEEeecccccccC--HHHH---Hhh--hcCCceEEEEeccCccccc
Confidence 899999999999999865 4443 211 2235789999999999864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-07 Score=86.68 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=152.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+....||+||..++..+ ....|.+++...|..........+ ++..+.|.-....+.+.+...+
T Consensus 16 ~i~sl~fs~~G~~litss----------~dDsl~LYd~~~g~~~~ti~skky----G~~~~~Fth~~~~~i~sStk~d-- 79 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS----------EDDSLRLYDSLSGKQVKTINSKKY----GVDLACFTHHSNTVIHSSTKED-- 79 (311)
T ss_pred ceeEEEecCCCCEEEEec----------CCCeEEEEEcCCCceeeEeecccc----cccEEEEecCCceEEEccCCCC--
Confidence 578899999999998843 234677778878775555444433 4667788877777776643111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|..+++ +-+ ++....+ ..+..+..||-+..
T Consensus 80 ---------------------------------------------~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 80 ---------------------------------------------DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------------------------------------CceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 25666666 443 3344444 67789999998877
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++-.+.+ ..+.+||+...+.+-+-.... ....+++|+|- +|+.+.
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~GL---ifA~~~----- 159 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEGL---IFALAN----- 159 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCCc---EEEEec-----
Confidence 6655444 368899998654432222111 11459999994 443321
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE---eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
....|.++|+...+++.-.... ....... +.||||||.|+.+++ .+.++++|+=.| ....-....
T Consensus 160 -----~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G--~~~~tfs~~ 228 (311)
T KOG1446|consen 160 -----GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG--TVKSTFSGY 228 (311)
T ss_pred -----CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC--cEeeeEeec
Confidence 1235666666433222222221 1133445 899999999998773 346888888665 222222221
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
.+... ....-.|+|||+.|+..+.+ .+|..|++++|.....+...
T Consensus 229 ~~~~~---~~~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGN---LPLSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCC---cceeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 11100 01125699999988877732 37999999999887776653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-08 Score=89.71 Aligned_cols=251 Identities=8% Similarity=0.056 Sum_probs=147.2
Q ss_pred CCcceeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
|+-..+.++++.. ++.+ .+.....+..+-+..|+|--.-+.++. .+...+.+++...++...-+..
T Consensus 39 s~dktv~v~n~e~----~r~~~~~~~~gh~~svdql~w~~~~~d~~ata---------s~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 39 SFDKTVSVWNLER----DRFRKELVYRGHTDSVDQLCWDPKHPDLFATA---------SGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred ccCCceEEEEecc----hhhhhhhcccCCCcchhhheeCCCCCcceEEe---------cCCceEEEEEeccCcEEEEeec
Confidence 3445677888877 4222 222222232567888998887776665 4557888888888887666544
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.... ....|||||+++++...+ ..|-
T Consensus 106 ~~en-----i~i~wsp~g~~~~~~~kd-------------------------------------------------D~it 131 (313)
T KOG1407|consen 106 KGEN-----INITWSPDGEYIAVGNKD-------------------------------------------------DRIT 131 (313)
T ss_pred cCcc-----eEEEEcCCCCEEEEecCc-------------------------------------------------ccEE
Confidence 4322 356999999999998432 2344
Q ss_pred EEcC-CCCceec-CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 161 LGSL-DGTAKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 161 ~~~~-~G~~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
.+|. +-++..- .......++.|+-++..++.+ .... .+.+..-. .++.+ ..+.
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt-~GlG------------~v~ILsyp--sLkpv----------~si~ 186 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT-NGLG------------CVEILSYP--SLKPV----------QSIK 186 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEe-cCCc------------eEEEEecc--ccccc----------cccc
Confidence 4444 2211111 111445678899666655444 3311 22222111 12221 1223
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
+...+--.+.|+|+|++ ++.-+ ....+-++|++. =-..+.++..++.+. ++||-||++|+-+++
T Consensus 187 AH~snCicI~f~p~Gry-fA~Gs------------ADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRY-FATGS------------ADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred cCCcceEEEEECCCCce-Eeecc------------ccceeeccChhH--hhhheeeccccCceEEEEeccCcceeeccCc
Confidence 33344568999999999 55533 123566777741 124567778899999 999999999998763
Q ss_pred ecccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeec
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKE 373 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~ 373 (751)
. .-|=+...++| .++++..- ...+. ++|.|.--.|+|+..++
T Consensus 252 D----h~IDIA~vetG----d~~~eI~~~~~t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 252 D----HFIDIAEVETG----DRVWEIPCEGPTFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred c----ceEEeEecccC----CeEEEeeccCCcee------EEecCCCceeeEEecCC
Confidence 2 23445566665 23332211 11112 88999999999999654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-08 Score=105.07 Aligned_cols=270 Identities=18% Similarity=0.130 Sum_probs=151.0
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
...++||||++|||....+ ++....|+++|+++|+...- .-.. .....+.|++||+.++|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~l~d--~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKFLPD--GIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEEEEE--EEEE---EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcCcCC--cccc---cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3678999999999987532 25568999999999853321 1010 012248999999999999654322100
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--eecCCC---ce-EEeeeeCCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTP---AV-YTAVEPSPDQ 186 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--~~lt~~---~~-~~~~~~SpDG 186 (751)
......+||+..+ ++.. +.|-.. .. ...+..|+||
T Consensus 197 --------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 197 --------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp --------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred --------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0001268999988 5522 344322 33 5688999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCc-----eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
++|++.+..... .+++|+.++..+ ..+.+..... +. .......|.. +++..
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~-~~~v~~~~~~-~yi~T 294 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GV-EYYVDHHGDR-LYILT 294 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S--EEEEEEETTE-EEEEE
T ss_pred cEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ce-EEEEEccCCE-EEEee
Confidence 999988765421 268999999864 3444432211 11 1112222555 44433
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCce-EeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC-CCCCcce
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG-SKDVAPR 338 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~ 338 (751)
. ....++.|+.++++........ .+........ -.++..+.+|++.... ....+|.++++. +. ...
T Consensus 295 n--------~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~~~~--~~~ 363 (414)
T PF02897_consen 295 N--------DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLDDGK--ESR 363 (414)
T ss_dssp ---------TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT-TE--EEE
T ss_pred C--------CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECCCCc--EEe
Confidence 1 2224468888888622111122 4555444333 4566777887766643 455789999998 52 222
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.+.......+.. ....+++..+.|.... -.....++.+|+++++.+.+
T Consensus 364 ~~~~p~~g~v~~------~~~~~~~~~~~~~~ss-----------------~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 364 EIPLPEAGSVSG------VSGDFDSDELRFSYSS-----------------FTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEESSSSSEEEE------EES-TT-SEEEEEEEE-----------------TTEEEEEEEEETTTTCEEEE
T ss_pred eecCCcceEEec------cCCCCCCCEEEEEEeC-----------------CCCCCEEEEEECCCCCEEEE
Confidence 222211111111 3345667766666532 12455899999999988765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=93.67 Aligned_cols=94 Identities=14% Similarity=-0.055 Sum_probs=57.1
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee-eccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~-~lt~~~~~ 83 (751)
..|+++|..+ ++..... +.+..-.. .+||||+.|+.+...-.....+.....|-++|+++.+.. .|...+..
T Consensus 27 ~~v~ViD~~~----~~v~g~i--~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMT--DGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CEEEEEE--EccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 5788999887 7765433 34443444 599999999776641111112235578889999998743 33222211
Q ss_pred cc--cceeeeeEEecCCcEEEEee
Q 004475 84 CL--NAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 84 ~~--~~~~~~~~wspDg~~l~~~~ 105 (751)
.+ -..-..++.||||++|++..
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec
Confidence 10 00123679999999999773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.3e-08 Score=102.54 Aligned_cols=174 Identities=12% Similarity=0.073 Sum_probs=97.7
Q ss_pred cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 171 FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 171 lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
+..+ ..+..++|+|++..++++... ...+.+||+.+++..... ......+..++|
T Consensus 121 L~gH~~~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~~~~~l------------~~h~~~V~sla~ 176 (493)
T PTZ00421 121 LQGHTKKVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGKAVEVI------------KCHSDQITSLEW 176 (493)
T ss_pred ecCCCCcEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCeEEEEE------------cCCCCceEEEEE
Confidence 3334 667889999998544444332 346889999876543211 111233668999
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece-eEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
+|||+. |+..+ ..+.|.++|+.. +.....+....+ ... ..|++++..|+...........|.+
T Consensus 177 spdG~l-Latgs------------~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 177 NLDGSL-LCTTS------------KDKKLNIIDPRD--GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred ECCCCE-EEEec------------CCCEEEEEECCC--CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 999987 55433 235788888741 222233333322 234 7899998877654322222345666
Q ss_pred ecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 328 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
.|+... ..+..+....... ....+.|++|++.|+..+.. ...|+.||+.+++..
T Consensus 242 WDlr~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 242 WDTRKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLT 295 (493)
T ss_pred EeCCCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceE
Confidence 666543 2222222211111 11126689999988776621 126888898877654
Q ss_pred EE
Q 004475 408 RI 409 (751)
Q Consensus 408 ~l 409 (751)
..
T Consensus 296 ~~ 297 (493)
T PTZ00421 296 FC 297 (493)
T ss_pred EE
Confidence 33
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=102.40 Aligned_cols=316 Identities=9% Similarity=-0.013 Sum_probs=149.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCccc-ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAK-INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~ 82 (751)
..|.++|..+ .+..... +.+.. .....+||||++++.. .+ .+.|-++|+.+++. +++-.+.
T Consensus 16 ~~v~viD~~t----~~~~~~i--~~~~~~h~~~~~s~Dgr~~yv~-~r---------dg~vsviD~~~~~~v~~i~~G~- 78 (369)
T PF02239_consen 16 GSVAVIDGAT----NKVVARI--PTGGAPHAGLKFSPDGRYLYVA-NR---------DGTVSVIDLATGKVVATIKVGG- 78 (369)
T ss_dssp TEEEEEETTT-----SEEEEE--E-STTEEEEEE-TT-SSEEEEE-ET---------TSEEEEEETTSSSEEEEEE-SS-
T ss_pred CEEEEEECCC----CeEEEEE--cCCCCceeEEEecCCCCEEEEE-cC---------CCeEEEEECCcccEEEEEecCC-
Confidence 3678888877 6654322 22222 2446799999987554 21 25899999998874 3442222
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+++||||++|+..... ..++.++
T Consensus 79 -----~~~~i~~s~DG~~~~v~n~~------------------------------------------------~~~v~v~ 105 (369)
T PF02239_consen 79 -----NPRGIAVSPDGKYVYVANYE------------------------------------------------PGTVSVI 105 (369)
T ss_dssp -----EEEEEEE--TTTEEEEEEEE------------------------------------------------TTEEEEE
T ss_pred -----CcceEEEcCCCCEEEEEecC------------------------------------------------CCceeEe
Confidence 24678999999999877331 1467777
Q ss_pred cC-CCCc-eecCCC--------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 163 SL-DGTA-KDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 163 ~~-~G~~-~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
|. +.++ +.+... ..+..+.-||+...++++..+ ..+++++|.............
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~---- 169 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIK---- 169 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE----
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeec----
Confidence 76 4433 222111 234466678888877666544 347888887643222111111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE---EEE-ec
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS---VSW-CD 307 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~---~~~-sp 307 (751)
....+....|+|||+++++... ..+.+-+++.+ ......+.. ...... ..| .|
T Consensus 170 -------~g~~~~D~~~dpdgry~~va~~------------~sn~i~viD~~---~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 170 -------VGRFPHDGGFDPDGRYFLVAAN------------GSNKIAVIDTK---TGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp ---------TTEEEEEE-TTSSEEEEEEG------------GGTEEEEEETT---TTEEEEEEE-SSSBEETTEEEEEET
T ss_pred -------ccccccccccCcccceeeeccc------------ccceeEEEeec---cceEEEEeeccccccccccccccCC
Confidence 1122347899999998444322 22366666654 222211111 111100 111 23
Q ss_pred CCceEEEeeeecccceeEE------EecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 308 DSLALVNETWYKTSQTRTW------LVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
....++...........+. ..+... .+...........++ +..+||+++|++...-
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~--wkvv~~I~~~G~glF-------i~thP~s~~vwvd~~~--------- 289 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYA--WKVVKTIPTQGGGLF-------IKTHPDSRYVWVDTFL--------- 289 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTB--TSEEEEEE-SSSS---------EE--TT-SEEEEE-TT---------
T ss_pred CcceEEeeccccceecccccCCccccchhhc--CeEEEEEECCCCcce-------eecCCCCccEEeeccC---------
Confidence 3222222111100000111 122222 111111111111111 6679999999887310
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEee-ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWE-SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+ .....|.++|.++.+...-.. ..+. .+.. +.|++||+++.++.+.... .|.++|..+
T Consensus 290 ------~--~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h-------~ef~~dG~~v~vS~~~~~~--~i~v~D~~T 348 (369)
T PF02239_consen 290 ------N--PDADTVQVIDKKTLKVVKTITPGPGK----RVVH-------MEFNPDGKEVWVSVWDGNG--AIVVYDAKT 348 (369)
T ss_dssp ---------SSHT-EEEEECCGTEEEE-HHHHHT------EEE-------EEE-TTSSEEEEEEE--TT--EEEEEETTT
T ss_pred ------C--CCCceEEEEECcCcceeEEEeccCCC----cEec-------cEECCCCCEEEEEEecCCC--EEEEEECCC
Confidence 0 125589999998875432211 1110 1222 4799999999998876554 899999888
Q ss_pred Ccee-Eee
Q 004475 461 KKSS-QIT 467 (751)
Q Consensus 461 g~~~-~lt 467 (751)
.++. +++
T Consensus 349 l~~~~~i~ 356 (369)
T PF02239_consen 349 LKEKKRIP 356 (369)
T ss_dssp TEEEEEEE
T ss_pred cEEEEEEE
Confidence 7644 443
|
... |
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=111.63 Aligned_cols=164 Identities=23% Similarity=0.237 Sum_probs=102.2
Q ss_pred eEEEEcCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 555 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
|.|++ .+.+|.|.+.. ......-..+|+.+.++.+++.-.+ +++.++||||||.+++.+++.+|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 55667777653 1233334466677777777765333 45999999999999999999999999999999
Q ss_pred cCCC--C----CCCCcc-Ccccc---------c--------cc-----ch-----------------hh-----------
Q 004475 633 SGSY--N----KTLTPF-GFQTE---------F--------RT-----LW-----------------EA----------- 655 (751)
Q Consensus 633 ~~~~--d----~~~~~~-~~~~~---------~--------~~-----~~-----------------~~----------- 655 (751)
++.. . ...... ..... . .. .+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 9851 0 000000 00000 0 00 00 00
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHH
Q 004475 656 ---TNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 656 ---~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
...+........+.++++|+|+++|+.|.++| +.....+.+.+. ..++++++++||... .+...+..+
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~----~~~~~~~~~~GH~~~-~~~~~~~~~ 226 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIP----NSQLVLIEGSGHFAF-LEGPDEFNE 226 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHST----TEEEEEETTCCSTHH-HHSHHHHHH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcC----CCEEEECCCCChHHH-hcCHHhhhh
Confidence 00011111223456799999999999999998 777777554443 478999999999865 333333333
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=95.65 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=69.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...-|+.|.-+|..+.. ..+-|.++++..-+-.--.+.. .+++....|||||+.|+.+++
T Consensus 50 ki~yieW~ads~~ilC~~y---------k~~~vqvwsl~Qpew~ckIdeg----~agls~~~WSPdgrhiL~tse----- 111 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAY---------KDPKVQVWSLVQPEWYCKIDEG----QAGLSSISWSPDGRHILLTSE----- 111 (447)
T ss_pred Hhhheeeeccceeeeeeee---------ccceEEEEEeecceeEEEeccC----CCcceeeeECCCcceEeeeec-----
Confidence 5788999999999988753 2356666676555433322222 225778899999999987743
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i 189 (751)
....|-++.+ +.+...+..+ .....++|.|||++.
T Consensus 112 -------------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 112 -------------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred -------------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 1135555666 4444444444 566899999999999
Q ss_pred EEEEec
Q 004475 190 LITSMH 195 (751)
Q Consensus 190 ~~~~~~ 195 (751)
++.+..
T Consensus 149 ai~sRr 154 (447)
T KOG4497|consen 149 AILSRR 154 (447)
T ss_pred eeeecc
Confidence 887654
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-09 Score=99.42 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=129.5
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC--chHHHHHHhCC---
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARR--- 554 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G--- 554 (751)
..+.+.+.+.-..+...++|+|+++.+.. ++|+++++||--| ...+ ......+...|
T Consensus 68 ~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~----------------~~~g~i~~~~dsli~~g~i~ 129 (299)
T COG2382 68 PVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDW----------------FRSGRIPRILDSLIAAGEIP 129 (299)
T ss_pred chhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHH----------------HhcCChHHHHHHHHHcCCCC
Confidence 34555555554467888899999877654 5999999999421 1111 12233444443
Q ss_pred -eEEEEcCCCCCCCCCCCC-CCchhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 555 -FAVLAGPSIPIIGEGDKL-PNDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 555 -~~v~~~~~~~~~g~g~~~-~~~~~~~~~~~d~~~~v~~l~~~~~--id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
-+++.+++.+..-..... .+..+...+.+ +.+=++.++.. -+.+.-+|+|.|+||.++++++.++|+.|..++
T Consensus 130 pai~vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~ 206 (299)
T COG2382 130 PAILVGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVL 206 (299)
T ss_pred CceEEecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceee
Confidence 445554553321111111 11223333333 44455555422 345678999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
+.+|.++....... .....+.. .+....+.....-++...++.+.+ ....+++++.|..++.++.+.
T Consensus 207 s~Sps~~~~~~~~~---~~~~~~~~------l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yr 273 (299)
T COG2382 207 SQSGSFWWTPLDTQ---PQGEVAES------LKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYR 273 (299)
T ss_pred ccCCccccCccccc---cccchhhh------hhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceee
Confidence 99998775533211 11111110 111111222223233334444444 345678999999999999999
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.|+| ||.+. .+...+.++|...+.
T Consensus 274 e~~G-gHdw~------~Wr~~l~~~L~~l~~ 297 (299)
T COG2382 274 EYPG-GHDWA------WWRPALAEGLQLLLP 297 (299)
T ss_pred ecCC-CCchh------HhHHHHHHHHHHhhc
Confidence 9999 89864 344556666665543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.5e-08 Score=102.78 Aligned_cols=251 Identities=13% Similarity=0.094 Sum_probs=148.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEc-CCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~-~~g~~~~lt~~~~~ 83 (751)
-|.++.+.+ ++.+.+..+.. ...+...+|||||++|+-. .....|+++++ +.+...+...+...
T Consensus 182 ~i~~~~~~~----~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~----------s~D~tiriwd~~~~~~~~~~l~gH~~ 247 (456)
T KOG0266|consen 182 LIRIWKLEG----IKSNLLRELSGHTRGVSDVAFSPDGSYLLSG----------SDDKTLRIWDLKDDGRNLKTLKGHST 247 (456)
T ss_pred cEEEeeccc----ccchhhccccccccceeeeEECCCCcEEEEe----------cCCceEEEeeccCCCeEEEEecCCCC
Confidence 456666655 44112222222 2368999999999987775 34578888888 44444333333221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|+|+.|+..+.+ ..+.+++
T Consensus 248 ----~v~~~~f~p~g~~i~Sgs~D-------------------------------------------------~tvriWd 274 (456)
T KOG0266|consen 248 ----YVTSVAFSPDGNLLVSGSDD-------------------------------------------------GTVRIWD 274 (456)
T ss_pred ----ceEEEEecCCCCEEEEecCC-------------------------------------------------CcEEEEe
Confidence 36789999999877776443 4677778
Q ss_pred C-CCCce-ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 164 L-DGTAK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 164 ~-~G~~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ +|+.. .|..+ ..+..++|++||+.|+..+. ...+.+||+.++..+.+......+..
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~------- 334 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-------------DGTIRVWDLETGSKLCLKLLSGAENS------- 334 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-------------CccEEEEECCCCceeeeecccCCCCC-------
Confidence 8 56544 44444 78889999999999987643 34688999998874311111111111
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecCCceEEEee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDDSLALVNET 316 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spdg~~l~~~~ 316 (751)
. -+..+.|+|||++ ++... ....+.++++.. +........... -+. +..+++|++|+-..
T Consensus 335 ~-~~~~~~fsp~~~~-ll~~~------------~d~~~~~w~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~ 398 (456)
T KOG0266|consen 335 A-PVTSVQFSPNGKY-LLSAS------------LDRTLKLWDLRS--GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS 398 (456)
T ss_pred C-ceeEEEECCCCcE-EEEec------------CCCeEEEEEccC--CcceeeecccCCcceeEecccccCCCCeEEEEe
Confidence 0 1458899999998 44432 234666666631 222233322222 122 55588999888766
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. ...|+..+..++ .....+..+....+.. ++|+|....+++.+
T Consensus 399 ~----d~~v~~~~~~s~-~~~~~l~~h~~~~~~~------~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 399 E----DGSVYVWDSSSG-GILQRLEGHSKAAVSD------LSSHPTENLIASSS 441 (456)
T ss_pred C----CceEEEEeCCcc-chhhhhcCCCCCceec------cccCCCcCeeeecC
Confidence 3 246777777764 2222232221111111 66888888777766
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=108.37 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=112.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--------CeeeccCCCCccccceeeeeEEecCCcEEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--------EAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--------~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 103 (751)
.+.....||||.++|.-.. ..+++..||-.+.-.. -+++|+....+ .+.+..+.|||||++||+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq------~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h--~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQ------VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDH--DGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred eEEEEEecCCceeEecCCc------cccccceeeccccccchhhhhhcccchhheeeccc--cCceeEEEECCCCCeEee
Confidence 4678999999999998321 1122333664433211 13444444332 224667889999999999
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc------C---CC--------
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS------L---DG-------- 166 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~---~G-------- 166 (751)
.+++.- ..||... + +|
T Consensus 87 GSDD~~-----------------------------------------------v~iW~~~~~~~~~~fgs~g~~~~vE~w 119 (942)
T KOG0973|consen 87 GSDDRL-----------------------------------------------VMIWERAEIGSGTVFGSTGGAKNVESW 119 (942)
T ss_pred ccCcce-----------------------------------------------EEEeeecccCCccccccccccccccee
Confidence 876521 1122221 0 01
Q ss_pred -CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCC
Q 004475 167 -TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 167 -~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
....+-.+ .++.++.||||+++++-.+.+ +.+.+|+..+-+. +.+-.+.. -
T Consensus 120 k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H~s-------------~ 173 (942)
T KOG0973|consen 120 KVVSILRGHDSDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGHQS-------------L 173 (942)
T ss_pred eEEEEEecCCCccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeecccc-------------c
Confidence 01122234 788899999999998876554 3578898876532 33322222 2
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe------eceeEE-EEEecCCceEEEee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK------LDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~~~~~~-~~~spdg~~l~~~~ 316 (751)
+.+++|.|-|++ ++-.+ ....|-++.+.+ -+..+.+++ ..-.+. ++|||||++|+...
T Consensus 174 VKGvs~DP~Gky-~ASqs------------dDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 174 VKGVSWDPIGKY-FASQS------------DDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceEECCccCe-eeeec------------CCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 447899999998 55533 112344444321 112223332 112234 89999999998765
Q ss_pred eecccceeEEEecC
Q 004475 317 WYKTSQTRTWLVCP 330 (751)
Q Consensus 317 ~~~~~~~~l~~~~~ 330 (751)
...+....+-+++-
T Consensus 239 A~n~~~~~~~IieR 252 (942)
T KOG0973|consen 239 AVNGGKSTIAIIER 252 (942)
T ss_pred hccCCcceeEEEec
Confidence 33333334444443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-07 Score=85.64 Aligned_cols=221 Identities=10% Similarity=0.098 Sum_probs=133.1
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
+.|.++|. ++ +..-++-+ ..+...+|||.|++|+--..++ ... +|++.+.+.+-. ...
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN-----------~Cs--iy~ls~~d~~g~------~~v 137 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN-----------KCS--IYPLSTRDAEGN------VRV 137 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-----------eeE--EEeccccccccc------cee
Confidence 57888888 66 66666555 7888999999999998765443 223 444443211100 000
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec-CCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD-DSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp-dg~~ 311 (751)
..-+.....++..+.|-+|+. |+-.+ ......++|++. +........+.+.+. ++++| +++.
T Consensus 138 ~r~l~gHtgylScC~f~dD~~--ilT~S------------GD~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNH--ILTGS------------GDMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeecCccceeEEEEEcCCCc--eEecC------------CCceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCe
Confidence 011223334566888888775 44433 234678888862 334444555677777 89999 8998
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 391 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (751)
++-.. ......||-+. . +..++.+.++..++.. +.|-|+|..++..+.+
T Consensus 202 FvSg~--cD~~aklWD~R--~--~~c~qtF~ghesDINs------v~ffP~G~afatGSDD------------------- 250 (343)
T KOG0286|consen 202 FVSGG--CDKSAKLWDVR--S--GQCVQTFEGHESDINS------VRFFPSGDAFATGSDD------------------- 250 (343)
T ss_pred EEecc--cccceeeeecc--C--cceeEeecccccccce------EEEccCCCeeeecCCC-------------------
Confidence 77654 23334566544 3 2446777666665554 8899999888777632
Q ss_pred CCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 392 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 392 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
...++||+-......+++.+.. ..+...++||..|+.|+.-+.. ....++|.
T Consensus 251 --~tcRlyDlRaD~~~a~ys~~~~---------~~gitSv~FS~SGRlLfagy~d----~~c~vWDt 302 (343)
T KOG0286|consen 251 --ATCRLYDLRADQELAVYSHDSI---------ICGITSVAFSKSGRLLFAGYDD----FTCNVWDT 302 (343)
T ss_pred --ceeEEEeecCCcEEeeeccCcc---------cCCceeEEEcccccEEEeeecC----CceeEeec
Confidence 3677889887777677765432 1223346888888644433322 23556664
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=97.93 Aligned_cols=188 Identities=18% Similarity=0.131 Sum_probs=118.1
Q ss_pred CCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC-----------------
Q 004475 509 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK----------------- 571 (751)
Q Consensus 509 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~----------------- 571 (751)
.+++|+|||.||-| + +...+..++..+|++||+|+++..+|....-..
T Consensus 115 ~~k~PvvvFSHGLg-----------g----sRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG-----------G----SRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc-----------c----chhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45799999999964 1 222334678899999999999766655432100
Q ss_pred ----CCCch-------hHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 004475 572 ----LPNDR-------FVEQLVSSAEAAVEEVVRR---------------------GVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 572 ----~~~~~-------~~~~~~~d~~~~v~~l~~~---------------------~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
..+.. -...-++++..|++-|++. +.+|..+++++|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 00000 0112245666676666542 235678899999999999999888
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
+.+ ..|+|+|++.+.+-+... .+..+.+-|+|+|. ..|... -+.....+.
T Consensus 260 s~~-t~FrcaI~lD~WM~Pl~~------------------------~~~~~arqP~~fin-v~~fQ~----~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAWMFPLDQ------------------------LQYSQARQPTLFIN-VEDFQW----NENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeeeecccch------------------------hhhhhccCCeEEEE-cccccc----hhHHHHHHh
Confidence 877 679999988875321110 12345678999998 445543 233344444
Q ss_pred HHhCCCcEEEEEeCCCCCcCCc----------------------cccHHHHHHHHHHHHHHHhc
Q 004475 700 LKGHGALSRLVLLPFEHHVYAA----------------------RENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~----------------------~~~~~~~~~~~~~fl~~~l~ 741 (751)
+...+..-.+..+.|+-|.-.. .+..+...+..++||++++.
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 4444444578888888884211 01123456778999999875
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-08 Score=97.06 Aligned_cols=216 Identities=16% Similarity=0.066 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchH-HHHHHhCCeEEEE--cCCCCCCCCC-
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-SLIFLARRFAVLA--GPSIPIIGEG- 569 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~v~~--~~~~~~~g~g- 569 (751)
....+++|...+. ...|++|++.|.| +.+......+ +..|++.|++.+. .+|++.+---
T Consensus 77 a~~~~~~P~~~~~---~~rp~~IhLagTG--------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~ 139 (348)
T PF09752_consen 77 ARFQLLLPKRWDS---PYRPVCIHLAGTG--------------DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKD 139 (348)
T ss_pred eEEEEEECCcccc---CCCceEEEecCCC--------------ccchhhhhhhhhhHHHHcCcceEEEecccccccChhH
Confidence 4555666766422 2379999999964 2222222233 6677888998776 4443322100
Q ss_pred ---CCCCC--ch--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--
Q 004475 570 ---DKLPN--DR--FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 570 ---~~~~~--~~--~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-- 640 (751)
..... .. .....+.++...+.|+.+++. .++++.|.||||+||.++++.+|..+..+-++++......
T Consensus 140 Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt 216 (348)
T PF09752_consen 140 QRRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFT 216 (348)
T ss_pred hhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchh
Confidence 00000 00 123557888999999999854 5899999999999999999999987776666665432110
Q ss_pred -------CccCccccc--------------ccc-----------hhhHHHH----HhcCcccccCCCC-----CCEEEEE
Q 004475 641 -------TPFGFQTEF--------------RTL-----------WEATNVY----IEMSPITHANKIK-----KPILIIH 679 (751)
Q Consensus 641 -------~~~~~~~~~--------------~~~-----------~~~~~~~----~~~~~~~~~~~~~-----~P~li~~ 679 (751)
..|...... ... +.+.+.. ....-..++.+.. -.+.++.
T Consensus 217 ~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~ 296 (348)
T PF09752_consen 217 EGVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVA 296 (348)
T ss_pred hhhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEE
Confidence 001000000 000 0001110 0111122333333 3378899
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
+++|..|| ......+.+.. ..+++.++++ ||.....-....+.+.|.+=|
T Consensus 297 A~~DaYVP--r~~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf 346 (348)
T PF09752_consen 297 AKNDAYVP--RHGVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAF 346 (348)
T ss_pred ecCceEec--hhhcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHh
Confidence 99999998 66655554444 4567888887 897544444445555555433
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-08 Score=89.96 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=72.2
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCc---ccccccchhhHHHHHhcCccccc-CCCCC
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGF---QTEFRTLWEATNVYIEMSPITHA-NKIKK 673 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 673 (751)
..++|+|.|+||+.|.+++.+++ +++ |+++|.+.....- .+. .......+-....+.+...+... .....
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~ 135 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPE 135 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCc
Confidence 45999999999999999999884 344 7778875522110 000 00000001111122222221111 12246
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
++++++++.|.+++ +..+...+ .. +...+.+|++|.+.. ..+.+..+++|+
T Consensus 136 ~~lvll~~~DEvLd--~~~a~~~~---~~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 136 RYLVLLQTGDEVLD--YREAVAKY---RG----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred cEEEEEecCCcccC--HHHHHHHh---cC----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 89999999999988 65554444 22 234566888999764 667888888887
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-07 Score=87.46 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=150.3
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.++|+.++ |+.. -.+++.. .+....||-||.+||.- +..+.|.|....+|..+.-...+..
T Consensus 88 AflW~~~~----ge~~--~eltgHKDSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~-- 149 (399)
T KOG0296|consen 88 AFLWDIST----GEFA--GELTGHKDSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE-- 149 (399)
T ss_pred EEEEEccC----Ccce--eEecCCCCceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC--
Confidence 57899988 7733 2233433 68999999999999983 4446666777767765554432221
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
.+.++.|.|-+..|++.+.+ ..+|.+.+
T Consensus 150 --dieWl~WHp~a~illAG~~D-------------------------------------------------GsvWmw~ip 178 (399)
T KOG0296|consen 150 --DIEWLKWHPRAHILLAGSTD-------------------------------------------------GSVWMWQIP 178 (399)
T ss_pred --ceEEEEecccccEEEeecCC-------------------------------------------------CcEEEEECC
Confidence 37799999999888887543 57888888
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCcc
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~ 241 (751)
++ ..+.+.-+ .....-.|.||||+|+....+ ..|.+|++.++++. .++........+..+...
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~- 244 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLA- 244 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccc-
Confidence 54 33444333 556677899999999876443 46889999887543 333211111111111000
Q ss_pred CCCceeeeecCCC--------ceEEEEEec---------cCCCCc-------------cccCcccceeeccCCCCCCCCc
Q 004475 242 EGMRSISWRADKP--------STLYWVEAQ---------DRGDAN-------------VEVSPRDIIYTQPAEPAEGEKP 291 (751)
Q Consensus 242 ~~~~~~~~spdG~--------~~i~~~~~~---------~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~~ 291 (751)
+-..++=+.+|. .-++.+... +..... .--...+.|.++|+. ....
T Consensus 245 -~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a---~~~~ 320 (399)
T KOG0296|consen 245 -GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA---ASTL 320 (399)
T ss_pred -cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc---cchh
Confidence 000111122221 111221110 000000 001123578888875 4566
Q ss_pred eEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 292 EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 292 ~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.+...+..+. ..|-+ ..+|+... .+..|+..|..++ ..+....+....+.. ++.+||++.|+..+
T Consensus 321 R~~c~he~~V~~l~w~~-t~~l~t~c----~~g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLN-TDYLLTAC----ANGKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred heeccCCCceEEEEEcC-cchheeec----cCceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 66666666666 88988 55555443 2346777888775 223333333332322 77899999888777
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-07 Score=88.30 Aligned_cols=278 Identities=13% Similarity=0.165 Sum_probs=151.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC--CCeeeccC-CCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~--g~~~~lt~-~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.++...||.||++||.++ +...|.+++++. .++.+... .-... + ...++|+||=+.+++....+
T Consensus 88 ~vt~~~FsSdGK~lat~~----------~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-h--pT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATIS----------GDRSIRLWDVRDFENKEHRCIRQNVEYD-H--PTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ceeeeEEcCCCceeEEEe----------CCceEEEEecchhhhhhhhHhhccccCC-C--ceEEEECCCcceEEEEEccC
Confidence 688999999999999985 334555556554 22222111 11111 1 24679999998888764321
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC----CCC----ceecCC------C
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGT----AKDFGT------P 174 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~G~----~~~lt~------~ 174 (751)
..|+++.+ +|. ...+.+ +
T Consensus 155 ------------------------------------------------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh 186 (420)
T KOG2096|consen 155 ------------------------------------------------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH 186 (420)
T ss_pred ------------------------------------------------CEEEEEEeeecccCCCCcccccccccccchhc
Confidence 23333333 231 111110 1
Q ss_pred -ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+.++-..-.+++|+-.+. ..+|.+|++.|..+..+. ++.......+.||||
T Consensus 187 ~v~~i~iGiA~~~k~imsas~-------------dt~i~lw~lkGq~L~~id-------------tnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 187 QVDIINIGIAGNAKYIMSASL-------------DTKICLWDLKGQLLQSID-------------TNQSSNYDAAVSPDG 240 (420)
T ss_pred ccceEEEeecCCceEEEEecC-------------CCcEEEEecCCceeeeec-------------cccccccceeeCCCC
Confidence 23445666667777766543 347899999865444432 222223456999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCC-CCCC--CCc---eEeEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEG--EKP---EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~~~---~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
+. |+.+.-. .++.++..- ..+| ++. ..|......+. ++||+++++++..+ ..+..+||
T Consensus 241 RF-ia~~gFT------------pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriw 305 (420)
T KOG2096|consen 241 RF-IAVSGFT------------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIW 305 (420)
T ss_pred cE-EEEecCC------------CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEe
Confidence 98 5553311 122222210 0112 122 22334444555 89999999998777 34567888
Q ss_pred EecCCCC-CCcceeeeecccccccCCCCCC-CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 327 LVCPGSK-DVAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 327 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
-.|..-. ...++.|-.++...... .+.| -++.||.|+.|+.... ..|.++..++|
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~g----------------------s~l~~~~se~g 362 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFG----------------------SDLKVFASEDG 362 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecC----------------------CceEEEEcccC
Confidence 8776532 12344443332221111 1122 2778999998887662 15777777776
Q ss_pred ceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 405 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
+...-...-. ...-..++|++||+.++--.
T Consensus 363 ~~~~~~e~~h----------~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 363 KDYPELEDIH----------STTISSISYSSDGKYIATCG 392 (420)
T ss_pred ccchhHHHhh----------cCceeeEEecCCCcEEeeec
Confidence 5432221110 01112368999999887653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-08 Score=100.51 Aligned_cols=289 Identities=13% Similarity=0.077 Sum_probs=141.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.++|+.+ ++...- +..+......++||||++|+.... ..+++-++|.++.+..+.......
T Consensus 57 dg~vsviD~~~----~~~v~~--i~~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 57 DGTVSVIDLAT----GKVVAT--IKVGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp TSEEEEEETTS----SSEEEE--EE-SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE
T ss_pred CCeEEEEECCc----ccEEEE--EecCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeecccccc
Confidence 35788899987 664432 344556788999999999976542 337899999888775443211110
Q ss_pred c---ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 84 C---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 84 ~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. ..+.+..+.-||+....++...+ ..++|
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd------------------------------------------------~~~I~ 153 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKD------------------------------------------------TGEIW 153 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETT------------------------------------------------TTEEE
T ss_pred cccccCCCceeEEecCCCCEEEEEEcc------------------------------------------------CCeEE
Confidence 0 01123345557777755554321 15899
Q ss_pred EEcC-CCC---ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 161 LGSL-DGT---AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~-~G~---~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++|. +.+ .+.+.......+..|+|||++++..... ...+-++|..+++...+... +..-.+..
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~------------sn~i~viD~~~~k~v~~i~~-g~~p~~~~ 220 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG------------SNKIAVIDTKTGKLVALIDT-GKKPHPGP 220 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG------------GTEEEEEETTTTEEEEEEE--SSSBEETT
T ss_pred EEEeccccccceeeecccccccccccCcccceeeecccc------------cceeEEEeeccceEEEEeec-cccccccc
Confidence 9998 332 2233223456688999999999886544 23577888877655443221 00000000
Q ss_pred cCCccCCCceeeeecCCCc--eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEE
Q 004475 237 YNSVREGMRSISWRADKPS--TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVN 314 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~--~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 314 (751)
...-..-..+..|.-.+.. .+..+. ...+.+++... -...+.+....+.+.+..+||+++|+.
T Consensus 221 ~~~~php~~g~vw~~~~~~~~~~~~ig-------------~~~v~v~d~~~--wkvv~~I~~~G~glFi~thP~s~~vwv 285 (369)
T PF02239_consen 221 GANFPHPGFGPVWATSGLGYFAIPLIG-------------TDPVSVHDDYA--WKVVKTIPTQGGGLFIKTHPDSRYVWV 285 (369)
T ss_dssp EEEEEETTTEEEEEEEBSSSSEEEEEE---------------TTT-STTTB--TSEEEEEE-SSSS--EE--TT-SEEEE
T ss_pred cccccCCCcceEEeeccccceeccccc-------------CCccccchhhc--CeEEEEEECCCCcceeecCCCCccEEe
Confidence 0000000112344433332 111111 11222233220 122333333222322677999999988
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
..........|.++|.++. .....+.......... +.|++||+.+++..++. +.
T Consensus 286 d~~~~~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h------~ef~~dG~~v~vS~~~~-------------------~~ 339 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTL-KVVKTITPGPGKRVVH------MEFNPDGKEVWVSVWDG-------------------NG 339 (369)
T ss_dssp E-TT-SSHT-EEEEECCGT-EEEE-HHHHHT--EEE------EEE-TTSSEEEEEEE---------------------TT
T ss_pred eccCCCCCceEEEEECcCc-ceeEEEeccCCCcEec------cEECCCCCEEEEEEecC-------------------CC
Confidence 6322233568999999884 1112222221100111 78999999998888542 12
Q ss_pred eeEEEecCCCceeEE
Q 004475 395 FLDLFDINTGSKERI 409 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l 409 (751)
.|.++|.+|.+....
T Consensus 340 ~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCcEEEEE
Confidence 788999998876444
|
... |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-06 Score=80.24 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=132.9
Q ss_pred EEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
.|.++|. +| +.+.+... -++.-+.|......+++.+... +..|...++.+.+..+.
T Consensus 37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~-----------d~tIryLsl~dNkylRY---------- 95 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE-----------DDTIRYLSLHDNKYLRY---------- 95 (311)
T ss_pred eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC-----------CCceEEEEeecCceEEE----------
Confidence 6777888 77 55566555 5677788888888887765521 34566777765544332
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVN 314 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 314 (751)
|......+..+..+|=+.. .+-. .....|++||+. .....-+....+.-.++|.|+|-.+|.
T Consensus 96 --F~GH~~~V~sL~~sP~~d~-FlS~------------S~D~tvrLWDlR---~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 96 --FPGHKKRVNSLSVSPKDDT-FLSS------------SLDKTVRLWDLR---VKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred --cCCCCceEEEEEecCCCCe-EEec------------ccCCeEEeeEec---CCCCceEEecCCCcceeECCCCcEEEE
Confidence 2223333456777777754 2221 133578888884 222222222222111689999987776
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecc--cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+... . .|.++|+..-+..|.+.+... ...-|. .+.||||||.|+....
T Consensus 158 ~~~~--~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-----~l~FS~dGK~iLlsT~--------------------- 207 (311)
T KOG1446|consen 158 ANGS--E--LIKLYDLRSFDKGPFTTFSITDNDEAEWT-----DLEFSPDGKSILLSTN--------------------- 207 (311)
T ss_pred ecCC--C--eEEEEEecccCCCCceeEccCCCCcccee-----eeEEcCCCCEEEEEeC---------------------
Confidence 5522 1 455555543223333332211 111111 1889999999998883
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
...++++|.=+|....-+..... -....-.+.|+|||+.++... . -+.|..+++++|+..-....
T Consensus 208 ~s~~~~lDAf~G~~~~tfs~~~~--------~~~~~~~a~ftPds~Fvl~gs-~---dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKSTFSGYPN--------AGNLPLSATFTPDSKFVLSGS-D---DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCcEEEEEccCCcEeeeEeeccC--------CCCcceeEEECCCCcEEEEec-C---CCcEEEEEcCCCcEeeEecC
Confidence 33788889888876544443221 001112368999999777654 2 35688899998876654443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=103.72 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=92.3
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..++.+.|+|-|-+++-.+.++ ...+|..+...+.++..... ..++.+.|+|+..
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~-------------tArLWs~d~~~PlRifaghl------------sDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQ-------------TARLWSTDHNKPLRIFAGHL------------SDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCCc-------------eeeeeecccCCchhhhcccc------------cccceEEECCccc
Confidence 6677889999998887765443 23455555444544433322 2355789999998
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+ ++--+ ....+.+||+. +|..++..+.+-+.+. +.|||+|++|+.+.. ...|-+.|+.++
T Consensus 549 Y-~aTGS------------sD~tVRlWDv~--~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 Y-VATGS------------SDRTVRLWDVS--TGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLANG 609 (707)
T ss_pred c-cccCC------------CCceEEEEEcC--CCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCCC
Confidence 7 33311 12356666664 2556666667777788 999999999987662 245666777774
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
....++..+ ....++ ++||.||..|+..+.
T Consensus 610 -~~v~~l~~H-t~ti~S------lsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 610 -SLVKQLKGH-TGTIYS------LSFSRDGNVLASGGA 639 (707)
T ss_pred -cchhhhhcc-cCceeE------EEEecCCCEEEecCC
Confidence 222233333 333344 889999999888773
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-06 Score=94.62 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|+|++..+++++.. ...+.+||+.+++........ ..+..++|+|||+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~~~-------------~~V~SlswspdG~ 180 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQINMP-------------KKLSSLKWNIKGN 180 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEecC-------------CcEEEEEECCCCC
Confidence 668899999999987765432 346889999876533211111 2356899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-----E-EEEecCCceEEEeeeecccceeEEEe
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-----S-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-----~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
. |+.+. ..+.|.++|+.. +.....+..+.+.. . ..|++|+++|+.+.......++|.+.
T Consensus 181 l-Lat~s------------~D~~IrIwD~Rs--g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 181 L-LSGTC------------VGKHMHIIDPRK--QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred E-EEEEe------------cCCEEEEEECCC--CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 7 54432 224788888741 22223333333321 1 23568999877655332222456666
Q ss_pred cCCC
Q 004475 329 CPGS 332 (751)
Q Consensus 329 ~~~~ 332 (751)
|+..
T Consensus 246 Dlr~ 249 (568)
T PTZ00420 246 DLKN 249 (568)
T ss_pred ECCC
Confidence 6664
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-08 Score=95.07 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=120.5
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC-chhHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAA 588 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~~ 588 (751)
+.|.++++||- .++...|. .....|+. -|-.|+++ +.+-+|.+..- ......+.+|+...
T Consensus 51 ~~Pp~i~lHGl-----------~GS~~Nw~----sv~k~Ls~~l~~~v~~v---d~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGL-----------LGSKENWR----SVAKNLSRKLGRDVYAV---DVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEeccc-----------ccCCCCHH----HHHHHhcccccCceEEE---ecccCCCCccccccCHHHHHHHHHHH
Confidence 47899999993 33322222 23334443 35566663 34445554321 22256778888888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEcc--C-CCCCCCC------------ccC--------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARS--G-SYNKTLT------------PFG-------- 644 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~--~-~~d~~~~------------~~~-------- 644 (751)
++....... ..++.++|||||| .+++..+...|+.+..+|... | .+..... +..
T Consensus 113 i~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHcccccc--cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 888865433 3579999999999 777777788888766555432 3 1110000 000
Q ss_pred ----------------------cc---cccccchhh-----HHHHH---hcCccccc--CCCCCCEEEEEcCCCCCCCCC
Q 004475 645 ----------------------FQ---TEFRTLWEA-----TNVYI---EMSPITHA--NKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 645 ----------------------~~---~~~~~~~~~-----~~~~~---~~~~~~~~--~~~~~P~li~~G~~D~~vp~~ 689 (751)
+. ......|.- .+.+. ..+.-..+ .....|+|+++|.++..+|
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~-- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVP-- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcC--
Confidence 00 000011110 11111 11221222 4457999999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+-.++.+.+ ..+++++++++||+.+ .++++.+++.+.+|+..+
T Consensus 269 ~~~~~~~~~~f----p~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 DEHYPRMEKIF----PNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred hhHHHHHHHhc----cchheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 56544444444 3479999999999997 788999999999988764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-06 Score=98.04 Aligned_cols=229 Identities=11% Similarity=0.128 Sum_probs=125.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--ee----eccCCCCccccceeeeeEEecC-CcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AK----PLFESPDICLNAVFGSFVWVNN-STLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~----~lt~~~~~~~~~~~~~~~wspD-g~~l~~~ 104 (751)
.+...+|||||++||... ....|.+++..+.. .+ ++..... +..+..++|+|. ++.|+..
T Consensus 485 ~V~~i~fs~dg~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred cEEEEEECCCCCEEEEEe----------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 477899999999998863 23556666654311 00 1100011 113567899875 6666655
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~ 181 (751)
..+ ..|.++|+ +++ ...+..+ ..+..++
T Consensus 552 ~~D-------------------------------------------------g~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 NFE-------------------------------------------------GVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred eCC-------------------------------------------------CeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 321 46777888 553 4445445 7788999
Q ss_pred eCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeee-cCCCceEEE
Q 004475 182 PSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYW 259 (751)
Q Consensus 182 ~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-pdG~~~i~~ 259 (751)
|+| ||..|+..+.+ ..+.+||+.++........ ...+..+.|+ ++|+. ++.
T Consensus 583 ~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~-------------~~~v~~v~~~~~~g~~-lat 635 (793)
T PLN00181 583 YSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT-------------KANICCVQFPSESGRS-LAF 635 (793)
T ss_pred EcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec-------------CCCeEEEEEeCCCCCE-EEE
Confidence 997 77777665433 3688999976543211111 0123467885 56776 555
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC--CCc
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVA 336 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~ 336 (751)
.+ ..+.|+++++.. .......+......+. +.|+ ++..|+.++. +..-.||-+..... ...
T Consensus 636 gs------------~dg~I~iwD~~~-~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~--D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 636 GS------------ADHKVYYYDLRN-PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST--DNTLKLWDLSMSISGINET 699 (793)
T ss_pred Ee------------CCCeEEEEECCC-CCccceEecCCCCCEEEEEEe-CCCEEEEEEC--CCEEEEEeCCCCccccCCc
Confidence 43 235788888741 1112233444455666 8887 6777766552 22234554432110 011
Q ss_pred ceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 337 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+........... ..++|+|+|++|+..+.
T Consensus 700 ~l~~~~gh~~~i------~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 700 PLHSFMGHTNVK------NFVGLSVSDGYIATGSE 728 (793)
T ss_pred ceEEEcCCCCCe------eEEEEcCCCCEEEEEeC
Confidence 111111111111 12779999998888773
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-06 Score=78.36 Aligned_cols=195 Identities=15% Similarity=0.238 Sum_probs=113.9
Q ss_pred cccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCC---eeeccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+...+|+|- |..||-. .....|.+++..++. -+.+++... ...++.++|||.|++|+..+.+
T Consensus 16 r~W~~awhp~~g~ilAsc----------g~Dk~vriw~~~~~~s~~ck~vld~~h---krsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASC----------GTDKAVRIWSTSSGDSWTCKTVLDDGH---KRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCceEEEee----------cCCceEEEEecCCCCcEEEEEeccccc---hheeeeeeecCCCcEEEEeecc
Confidence 4788999998 7766653 334567777765433 232322211 1258899999999999988664
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC--c-eecCCC-ceEEeeeeC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT--A-KDFGTP-AVYTAVEPS 183 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~--~-~~lt~~-~~~~~~~~S 183 (751)
.. ..||.-. +|+ . ..|-.+ ..+..++||
T Consensus 83 ~t-----------------------------------------------~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 AT-----------------------------------------------VVIWKKE-DGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred ce-----------------------------------------------EEEeecC-CCceeEEeeeeccccceeEEEEc
Confidence 21 2233221 332 1 122223 567899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
++|.+|+..+.++ .+|+|..+. .+...+.-. ......+..+.|+|...- |+-.+
T Consensus 115 ~sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL----------~~HtqDVK~V~WHPt~dl-L~S~S- 169 (312)
T KOG0645|consen 115 ASGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVL----------QEHTQDVKHVIWHPTEDL-LFSCS- 169 (312)
T ss_pred CCCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeee----------ccccccccEEEEcCCcce-eEEec-
Confidence 9999999876654 588888873 333322111 111123457899997664 33333
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
..+.|.++.-++ +.. ...|......+- ..|.+.|.+|+..++ ...-.||+
T Consensus 170 -----------YDnTIk~~~~~~--dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd--D~tv~Iw~ 223 (312)
T KOG0645|consen 170 -----------YDNTIKVYRDED--DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD--DGTVSIWR 223 (312)
T ss_pred -----------cCCeEEEEeecC--CCCeeEEEEecCccceEEEEEecCCCceEEEecC--CcceEeee
Confidence 234454444431 222 233333444444 889999999988773 34457777
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-07 Score=91.54 Aligned_cols=267 Identities=14% Similarity=0.160 Sum_probs=146.3
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcc--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.|.+||+.+ |..++-=..+.+. .-...+||-|++++|-+.. ..|-|.+..+ ...| .....
T Consensus 283 ~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-----------~sisIyEtps--f~ll-d~Ksl 344 (698)
T KOG2314|consen 283 QLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-----------NSISIYETPS--FMLL-DKKSL 344 (698)
T ss_pred eEEEEEccc----cchhcceeccCCCccccceEEeccCCceeEEecc-----------ceEEEEecCc--eeee-ccccc
Confidence 578999998 8877532222233 2245689999999998642 4555555433 1111 22222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
... ++..+.|||-++.|||-+....... ..+-++.
T Consensus 345 ki~-gIr~FswsP~~~llAYwtpe~~~~p--------------------------------------------arvtL~e 379 (698)
T KOG2314|consen 345 KIS-GIRDFSWSPTSNLLAYWTPETNNIP--------------------------------------------ARVTLME 379 (698)
T ss_pred CCc-cccCcccCCCcceEEEEcccccCCc--------------------------------------------ceEEEEe
Confidence 222 4789999999999999865433321 2444455
Q ss_pred C-CCCceecCCCceE--EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 164 L-DGTAKDFGTPAVY--TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 164 ~-~G~~~~lt~~~~~--~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ +++.-+..+--.+ .-+.|-..|++|.|..+.-.... ....-+.+.++.+..+++- +-..++.
T Consensus 380 vPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdIp-ve~velk---------- 445 (698)
T KOG2314|consen 380 VPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDIP-VEVVELK---------- 445 (698)
T ss_pred cCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCCC-ceeeecc----------
Confidence 5 4432222222222 35679999999999765432110 0111133444444333211 1111122
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E-EEEecCCceEEEeeee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S-VSWCDDSLALVNETWY 318 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~spdg~~l~~~~~~ 318 (751)
..+-.++|-|.|++ .+.++... ....-..|-+.. +...+..+...+... . +.|||-|++++.++-.
T Consensus 446 -e~vi~FaWEP~gdk-F~vi~g~~-------~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 446 -ESVIAFAWEPHGDK-FAVISGNT-------VKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred -hheeeeeeccCCCe-EEEEEccc-------cccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEec
Confidence 22447899999999 55554221 111123444432 244555555554443 3 8999999998877643
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+..+.|+-+|++-. ..+++. ...+. ....+.|.|.|++++..+
T Consensus 514 -s~~g~l~F~D~~~a--~~k~~~-~~eh~-----~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 514 -SRRGDLEFYDTDYA--DLKDTA-SPEHF-----AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred -ccccceEEEecchh--hhhhcc-Ccccc-----ccccceECCCCCEEEEee
Confidence 34567888888752 222221 11111 111167999999998877
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=84.70 Aligned_cols=207 Identities=17% Similarity=0.149 Sum_probs=110.3
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+.-.+|..|..|--.|....+. +.|+||+..|-+ ..+.. +..++.+|+.+||.|+..|....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~---~~~tiliA~Gf~--------------rrmdh-~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPK---RNNTILIAPGFA--------------RRMDH-FAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT---------------GGGGG-GHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCcc---cCCeEEEecchh--------------HHHHH-HHHHHHHHhhCCeEEEecccccc
Confidence 3345788999999999764433 368999998853 11211 23567899999999999555444
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---
Q 004475 566 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--- 642 (751)
Q Consensus 566 ~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~--- 642 (751)
.|...............+++..+++||.+++ ..+++++--|.-|-+|...++.- + +.-+|...|+++...+.
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 5543333344445677899999999999776 36799999999999999999855 3 67777777887622110
Q ss_pred -----cCc-----ccc---ccc-----chhhHHHHH-h----cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 643 -----FGF-----QTE---FRT-----LWEATNVYI-E----MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 643 -----~~~-----~~~---~~~-----~~~~~~~~~-~----~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
... +.. .+. .|- .+.+. . -+....++.+.+|++.++++.|..|. .....++...
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv-~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~ 220 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFV-TDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDN 220 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHH-HHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT
T ss_pred hccchhhcchhhCCCcccccccccchHHHH-HHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHh
Confidence 000 000 000 000 00000 0 12234567789999999999999987 7777666665
Q ss_pred HHhCCCcEEEEEeCCCCCcCC
Q 004475 700 LKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+.. ..+++..++|+.|...
T Consensus 221 ~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 221 INS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp -TT----EEEEEETT-SS-TT
T ss_pred cCC--CceeEEEecCccchhh
Confidence 543 3688999999999874
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-08 Score=96.47 Aligned_cols=223 Identities=10% Similarity=0.052 Sum_probs=137.0
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
....|++|++-. ..+-.|... .....+...+||++|+.+.-++ ....|.++|+++|+...-.....
T Consensus 235 mD~~vklW~vy~--~~~~lrtf~--gH~k~Vrd~~~s~~g~~fLS~s----------fD~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 235 MDGLVKLWNVYD--DRRCLRTFK--GHRKPVRDASFNNCGTSFLSAS----------FDRFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred CCceEEEEEEec--Ccceehhhh--cchhhhhhhhccccCCeeeeee----------cceeeeeeccccceEEEEEecCC
Confidence 456799999976 223333332 2334689999999999998863 45788888999998544322222
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
....+.+.||+..+++.... ...|..+
T Consensus 301 -----~~~cvkf~pd~~n~fl~G~s------------------------------------------------d~ki~~w 327 (503)
T KOG0282|consen 301 -----VPTCVKFHPDNQNIFLVGGS------------------------------------------------DKKIRQW 327 (503)
T ss_pred -----CceeeecCCCCCcEEEEecC------------------------------------------------CCcEEEE
Confidence 24567899999777766221 1478888
Q ss_pred cC-CCCcee-cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
|. +|++.+ ...+ +.+..+.|-++|++++.++.+. .+.+|+-.......+-..+..
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~--------- 385 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEM--------- 385 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhh---------
Confidence 88 785433 3333 7788999999999998877654 355666654433222111111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE--EEEecCCceEEEe
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS--VSWCDDSLALVNE 315 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~--~~~spdg~~l~~~ 315 (751)
.....++.+|+|++ ++.-+ ..+.|+++.+.+.-....+....+ ...+. +.|||||++|+.+
T Consensus 386 --hsmP~~~~~P~~~~-~~aQs------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 386 --HTMPCLTLHPNGKW-FAAQS------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred --ccCcceecCCCCCe-ehhhc------------cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 22347899999997 33322 224566655432111111222221 12233 8999999999875
Q ss_pred eeecccceeEEEecCCCC
Q 004475 316 TWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~ 333 (751)
. ....+|..|-.+.
T Consensus 451 d----sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 451 D----SDGKVNFWDWKTT 464 (503)
T ss_pred c----CCccEEEeechhh
Confidence 5 3457888887763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-06 Score=82.84 Aligned_cols=352 Identities=12% Similarity=0.101 Sum_probs=180.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.+++++..+ .....+......-........+|++|+.+|| .....++|.+...+. ..+|.....
T Consensus 12 ~~~l~~~~~--~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~-----------~~~~~v~i~~~~~~~-~~lt~~~~~-- 75 (566)
T KOG2315|consen 12 GFYLFNGPG--SKDAVTVFEQNKTSRPCNVFAYSNNGRLFAY-----------SDNQVVKVFEIATLK-VVLCVELKK-- 75 (566)
T ss_pred eeEEeccCC--ccccccccccCCCCCcceeEEEcCCCcEEEE-----------EcCCeEEEEEccCCc-EEEEeccce--
Confidence 567777765 2222222221111223467899999999999 445788888877765 334333321
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeec----cccccccchhhhh--ccCCccchhhhhhheeeEE
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSN----EQKNIIISRMTDN--LLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 159 (751)
...+.+||-|++|.--....... +.... .+-.+.. ...........+. ...++-|+.+..+.-...+
T Consensus 76 ---~~~L~fSP~g~yL~T~e~~~i~~-~~~~~---~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev 148 (566)
T KOG2315|consen 76 ---TYDLLFSPKGNYLLTWEPWAIYG-PKNAS---NPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEV 148 (566)
T ss_pred ---eeeeeeccccccccccccccccc-CCCCC---CCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceE
Confidence 35678999998875331111100 00000 0000000 0000011111122 3445556666665555677
Q ss_pred EEEcCCC---CceecCCCceEEeeeeCCCCc--eEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCC
Q 004475 160 VLGSLDG---TAKDFGTPAVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDI 233 (751)
Q Consensus 160 ~~~~~~G---~~~~lt~~~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~ 233 (751)
+.+++.+ ...+|. ...+..+.+||-+. .|++-..+.. .....+.+|... .+....+....
T Consensus 149 ~f~~~~~f~~~~~kl~-~~~i~~f~lSpgp~~~~vAvyvPe~k--------GaPa~vri~~~~~~~~~~~~a~ks----- 214 (566)
T KOG2315|consen 149 QFYDLGSFKTIQHKLS-VSGITMLSLSPGPEPPFVAVYVPEKK--------GAPASVRIYKYPEEGQHQPVANKS----- 214 (566)
T ss_pred EEEecCCccceeeeee-ccceeeEEecCCCCCceEEEEccCCC--------CCCcEEEEeccccccccchhhhcc-----
Confidence 7777744 222222 24566788888754 4444322211 112233333322 11111111110
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
.|..+ --.+.|.+-|..+|++++.. -.....+--....||+++++ +.....-....+.+. +.|+|+|+-+
T Consensus 215 --FFkad---kvqm~WN~~gt~LLvLastd-VDktn~SYYGEq~Lyll~t~---g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 215 --FFKAD---KVQMKWNKLGTALLVLASTD-VDKTNASYYGEQTLYLLATQ---GESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred --ccccc---eeEEEeccCCceEEEEEEEe-ecCCCccccccceEEEEEec---CceEEEecCCCCCceEEEECCCCCEE
Confidence 11111 12689999999977776532 10000011123489999885 433333334466777 9999999987
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+.....-. ..+-+.|+.+ ..+.+........ ..|+|-|+.|+++.-+. -
T Consensus 286 ~VvyGfMP--Akvtifnlr~-----~~v~df~egpRN~------~~fnp~g~ii~lAGFGN------------------L 334 (566)
T KOG2315|consen 286 AVVYGFMP--AKVTIFNLRG-----KPVFDFPEGPRNT------AFFNPHGNIILLAGFGN------------------L 334 (566)
T ss_pred EEEEeccc--ceEEEEcCCC-----CEeEeCCCCCccc------eEECCCCCEEEEeecCC------------------C
Confidence 66553333 3455567766 2444332222111 66999999999888431 2
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 447 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 447 (751)
+..+-+||+.+.+. +..... .+-..+.|+|||++++....++
T Consensus 335 ~G~mEvwDv~n~K~--i~~~~a-----------~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKL--IAKFKA-----------ANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCceEEEeccchhh--cccccc-----------CCceEEEEcCCCcEEEEEeccc
Confidence 34677888876433 222111 1112368999999988776553
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-07 Score=88.56 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=152.0
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...+.+|+..+ +....+.. ....+....|+-+|.+|+-.. -...+.++|..+|+.+|.....
T Consensus 254 ~~~G~~riw~~~G----~l~~tl~~--HkgPI~slKWnk~G~yilS~~----------vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 254 SEDGEARIWNKDG----NLISTLGQ--HKGPIFSLKWNKKGTYILSGG----------VDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ecCcEEEEEecCc----hhhhhhhc--cCCceEEEEEcCCCCEEEecc----------CCccEEEEeccCceEEEeeeec
Confidence 3455678888888 76666653 334689999999999998853 3356677788888866654333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
+.. .-.+.|-.+.++.....+ ..-.++.
T Consensus 318 s~~----~lDVdW~~~~~F~ts~td------------------------------------------------~~i~V~k 345 (524)
T KOG0273|consen 318 SAP----ALDVDWQSNDEFATSSTD------------------------------------------------GCIHVCK 345 (524)
T ss_pred cCC----ccceEEecCceEeecCCC------------------------------------------------ceEEEEE
Confidence 211 135688777764432211 0023444
Q ss_pred EcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCC
Q 004475 162 GSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++.++....+..+ +.+..+.|.|.|+.|+-.+.+. .+-+|.... .....| ..
T Consensus 346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l-------------~~ 399 (524)
T KOG0273|consen 346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG-------------TLKIWSMGQSNSVHDL-------------QA 399 (524)
T ss_pred ecCCCcceeeecccCceEEEEECCCCceEEEecCCC-------------eeEeeecCCCcchhhh-------------hh
Confidence 4445555555545 8889999999999888776543 456776432 211111 12
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|||+|.- -. -...+...........+.+++++. +.....+..+...+. ++|||||++|++.+.
T Consensus 400 Hskei~t~~wsp~g~v--~~--n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~ylAsGs~- 472 (524)
T KOG0273|consen 400 HSKEIYTIKWSPTGPV--TS--NPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGRYLASGSL- 472 (524)
T ss_pred hccceeeEeecCCCCc--cC--CCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCcEEEecCC-
Confidence 2233557789988853 00 011111111222345777788752 334455556666777 999999999998662
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
...|.+.+..++ +..+-...+ . +.+.++|+.+|..|.....
T Consensus 473 ---dg~V~iws~~~~--~l~~s~~~~-~------~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 473 ---DGCVHIWSTKTG--KLVKSYQGT-G------GIFELCWNAAGDKLGACAS 513 (524)
T ss_pred ---CCeeEeccccch--heeEeecCC-C------eEEEEEEcCCCCEEEEEec
Confidence 345666666663 212211111 1 1222889999998887773
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=96.57 Aligned_cols=219 Identities=19% Similarity=0.165 Sum_probs=121.7
Q ss_pred eEEEEEEcCC-CceEEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 481 KEMIKYQRKD-GVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 481 ~e~i~~~~~~-~~~i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+++.... +.++...+++|..... ....++|+|++-||.|.. ..+ +.+.+..+++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~-----------~~~----f~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY-----------VTG----FAWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC-----------ccc----hhhhHHHHhhCceEEE
Confidence 5556665543 5578999999976422 112369999999996511 122 2367889999999999
Q ss_pred EcCCCCCCCCCCCCC---C-----chhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 559 AGPSIPIIGEGDKLP---N-----DRFVEQLVSSAEAAVEEVVRR---G----VADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~---~-----~~~~~~~~~d~~~~v~~l~~~---~----~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
.++..+ .-.|+... . ....-+...|+..++++|.+. + .+|+.+|+++|||+||+.++.++.-..
T Consensus 103 ~~~hpg-s~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPG-SNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCC-cccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 844322 22222111 0 011123457888888888876 4 478999999999999999998875443
Q ss_pred Cc---eeEEEEcc-CCCCCCCCccCcccccccchhhHHHHHhcCc-----------------ccccCCCCCCEEEEEcCC
Q 004475 624 HL---FCCGIARS-GSYNKTLTPFGFQTEFRTLWEATNVYIEMSP-----------------ITHANKIKKPILIIHGEV 682 (751)
Q Consensus 624 ~~---~~~~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~P~li~~G~~ 682 (751)
+. ...+..-+ -..+..........+....|.....+...++ ..-+.+++.|++++.|..
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~ 261 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGRLLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSA 261 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChhhhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceeeecccc
Confidence 21 11111000 0000000000000111111111111111111 123467889999999999
Q ss_pred CCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 683 DDKVGLFPMQ-AERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 683 D~~vp~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
|...| +.. ....+..|. +....+.+.|++.|.-
T Consensus 262 D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 262 DGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred cccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 99876 332 222333332 3334688899999964
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=112.03 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=88.5
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-C-eEEEEcCCC-CCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-R-FAVLAGPSI-PIIGEG 569 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G-~~v~~~~~~-~~~g~g 569 (751)
-+...+|.|....+ ..++|+||++|||||..++.. .. ....++.+ + ++|+.++|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~--~~~~pv~v~ihGG~~~~g~~~--------~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKP--GNSLPVMVWIHGGGFMFGSGS--------LY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCC--CCCCCEEEEEcCCccccCCCC--------CC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 47778888875432 235899999999987544321 11 12334443 3 899998886 555554
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 570 DKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 570 ~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
............+.|+..+++|+++. -..|+++|.|+|+|+||+++..++... +..|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 33221122234578999999999875 236999999999999999999888763 457899999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=88.76 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=81.2
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~ 558 (751)
+.+.+.++..+. ++..++-+|.. + .-|++++.||+|..+ -.|. .++..+.. --..++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~-----------LSfA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSA-----------LSFA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccc-----------hhHH----HHHHHHHhhcceeEE
Confidence 345666665444 68888888863 1 269999999986322 1111 23334443 356667
Q ss_pred EcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEE
Q 004475 559 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIA 631 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~ 631 (751)
+ +|.+|+|++... ....+....|+...++++-.. .+.+|+|+||||||.+|.+.|... |. +.+++.
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~v 177 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVV 177 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEE
Confidence 7 788899987432 233567788999888888543 346799999999999998887653 44 444443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=91.37 Aligned_cols=239 Identities=8% Similarity=0.082 Sum_probs=130.2
Q ss_pred eEEEEEcCCC------CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC
Q 004475 157 AQLVLGSLDG------TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (751)
Q Consensus 157 ~~l~~~~~~G------~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (751)
..+..+|+.| .-++|... ..+....||+.|..|++.+... +.-++|.+|.+..+...+.
T Consensus 189 y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a-------------qakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 189 YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA-------------QAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-------------ceeEEccCCceeeeeeccc
Confidence 4566677766 12334322 5677999999999999886543 3456777766554433322
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---ecee--EE-
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLR--FS- 302 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~--~~- 302 (751)
-....-..-...-..+..-.|+|+.+. .+++.+ ..+.|.+|+++ ...+....+.. .... ..
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s-----------~DgtlRiWdv~-~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCS-----------YDGTLRIWDVN-NTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCccc-ceEEec-----------CCCcEEEEecC-CchhheeEEeeccCCCcccCcee
Confidence 110000000111123456699999998 555432 33567777774 22233333322 2222 23
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec---ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR---VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
.+|++||++|+.+. ..+..++|...-.+ ..+...... ..++... ++||+||++|+..+.+.
T Consensus 323 C~~nrdg~~iAagc--~DGSIQ~W~~~~~~--v~p~~~vk~AH~~g~~Its------i~FS~dg~~LlSRg~D~------ 386 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGC--LDGSIQIWDKGSRT--VRPVMKVKDAHLPGQDITS------ISFSYDGNYLLSRGFDD------ 386 (641)
T ss_pred eecCCCcchhhhcc--cCCceeeeecCCcc--cccceEeeeccCCCCceeE------EEeccccchhhhccCCC------
Confidence 79999999987766 33445777653322 222222211 1112222 88999999998877432
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec---CCCCCeEEEE
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQYHIL 456 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~~l~~~ 456 (751)
.|.+||+..-+ +.|..-. ...... ....+.||||.+ |+++..+ ...++.|+.+
T Consensus 387 ---------------tLKvWDLrq~k-kpL~~~t------gL~t~~-~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 387 ---------------TLKVWDLRQFK-KPLNVRT------GLPTPF-PGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred ---------------ceeeeeccccc-cchhhhc------CCCccC-CCCccccCCCce-EEEecccccCCCCCceEEEE
Confidence 78899986432 2221110 011111 123489999997 5555443 2345668888
Q ss_pred EcCCC
Q 004475 457 SWPLK 461 (751)
Q Consensus 457 ~~~~g 461 (751)
|..+-
T Consensus 443 d~~t~ 447 (641)
T KOG0772|consen 443 DRMTL 447 (641)
T ss_pred eccce
Confidence 86553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=90.23 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeecc-CCCCccccceeeeeEEecCCcEEEEeec
Q 004475 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 28 ~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+.+-+|.+||..++-.+ -+...+.|+++++|...+|- .+.+ ++..+.|||||.+|+..+.
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecc
Confidence 4444688999999999998865 45688999999999988885 2222 5788999999998887744
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCCceEEeeeeCCC
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPD 185 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpD 185 (751)
+. ...||-..-+- +.+.++..+.++...|||+
T Consensus 259 da-----------------------------------------------vfrlw~e~q~wt~erw~lgsgrvqtacWspc 291 (445)
T KOG2139|consen 259 DA-----------------------------------------------VFRLWQENQSWTKERWILGSGRVQTACWSPC 291 (445)
T ss_pred cc-----------------------------------------------eeeeehhcccceecceeccCCceeeeeecCC
Confidence 21 12344222211 2223333368889999999
Q ss_pred CceEEEEEecCC
Q 004475 186 QKYVLITSMHRP 197 (751)
Q Consensus 186 G~~i~~~~~~~~ 197 (751)
|++|+|+....+
T Consensus 292 GsfLLf~~sgsp 303 (445)
T KOG2139|consen 292 GSFLLFACSGSP 303 (445)
T ss_pred CCEEEEEEcCCc
Confidence 999999877643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-06 Score=92.78 Aligned_cols=260 Identities=13% Similarity=0.096 Sum_probs=145.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
+....|||||++|||... ..++...+|+++++++|+ ...+.... ..++|++||+.|+|+......
T Consensus 129 l~~~~~Spdg~~la~~~d-----~~G~E~~~l~v~d~~tg~~l~~~i~~~~--------~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAED-----FLSRRQYGIRFRNLETGNWYPELLDNVE--------PSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EeEEEECCCCCEEEEEec-----CCCcEEEEEEEEECCCCCCCCccccCcc--------eEEEEeeCCCEEEEEEecCCC
Confidence 567889999999999864 233566899999999887 44442211 347999999999998653110
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC--ceEE-eeeeCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYT-AVEPSP 184 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~--~~~~-~~~~Sp 184 (751)
. +..+||+.++ ++ +.+.|... .... ....+.
T Consensus 196 ~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~ 232 (686)
T PRK10115 196 L-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT 232 (686)
T ss_pred C-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC
Confidence 0 1158999999 66 44555432 2222 344456
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|++++++...... .+++++++.+ .+..+.+...+.. . .+.....+.. +++.+.
T Consensus 233 d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-ly~~tn 287 (686)
T PRK10115 233 SKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRRKD-------------H-EYSLDHYQHR-FYLRSN 287 (686)
T ss_pred CCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECCCC-------------C-EEEEEeCCCE-EEEEEc
Confidence 9999987655432 3467777743 2222322222111 0 1122233344 444331
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEee-c-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-D-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
. ...+..|+.+++.. .+..+.+... . ..+. +.++ ++.|++.... .+...|++++..++ ..+.
T Consensus 288 ~--------~~~~~~l~~~~~~~--~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~l~~~~~~~~--~~~~ 352 (686)
T PRK10115 288 R--------HGKNFGLYRTRVRD--EQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTSLRQINRKTR--EVIG 352 (686)
T ss_pred C--------CCCCceEEEecCCC--cccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEEEEEEcCCCC--ceEE
Confidence 1 11234677777741 1344455544 2 3556 6776 5577766643 34567999987653 3333
Q ss_pred ee-ecccccccCCCCCCCeeeC--CCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 340 LF-DRVFENVYSDPGSPMMTRT--STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 340 l~-~~~~~~~~~~~~~~~~~~s--pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
+. ........ +.++ +++..+++.... ......++.+|+.+++.+.+...
T Consensus 353 l~~~~~~~~~~-------~~~~~~~~~~~~~~~~ss-----------------~~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 353 IAFDDPAYVTW-------IAYNPEPETSRLRYGYSS-----------------MTTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred ecCCCCceEee-------ecccCCCCCceEEEEEec-----------------CCCCCEEEEEECCCCcEEEEEec
Confidence 33 11111000 1123 555555555421 23456899999988876666543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-06 Score=92.02 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=116.7
Q ss_pred cccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCe-----eeccCCCCccccceeeeeEEecCCc-EEEEe
Q 004475 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST-LLIFT 104 (751)
Q Consensus 32 ~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~-~l~~~ 104 (751)
.+....||| |++.||..+ ....|.++++.++.. .++.....+ ...+..++|+|++. .|+..
T Consensus 77 ~V~~v~fsP~d~~~LaSgS----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS----------EDGTIMGWGIPEEGLTQNISDPIVHLQGH--TKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe----------CCCEEEEEecCCCccccccCcceEEecCC--CCcEEEEEeCcCCCCEEEEE
Confidence 578999999 888887753 335666667655421 111111111 11367889999874 55544
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~ 181 (751)
+.+ ..|.++|+ +++ ...+..+ ..+..++
T Consensus 145 s~D-------------------------------------------------gtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 145 GAD-------------------------------------------------MVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred eCC-------------------------------------------------CEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 322 46778888 564 3444444 6788999
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
|+|||+.|+..+.+ ..|.+||+.+++.. .+..+... ....+.|++++.. |+.+
T Consensus 176 ~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~~------------~~~~~~w~~~~~~-ivt~ 229 (493)
T PTZ00421 176 WNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHASA------------KSQRCLWAKRKDL-IITL 229 (493)
T ss_pred EECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCCC------------cceEEEEcCCCCe-EEEE
Confidence 99999988876543 36889999865432 22221111 0124689999887 4433
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
... ....+.|.++|+.. ...+..... ...... +.|++|++.|+.+.. +...|.++++..+
T Consensus 230 G~s--------~s~Dr~VklWDlr~--~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~ 292 (493)
T PTZ00421 230 GCS--------KSQQRQIMLWDTRK--MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNE 292 (493)
T ss_pred ecC--------CCCCCeEEEEeCCC--CCCceeEeccCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCC
Confidence 211 11235788888741 112222211 122334 789999998776542 2245666666653
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.4e-08 Score=89.93 Aligned_cols=183 Identities=17% Similarity=0.179 Sum_probs=112.4
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
..+..++.|.. ++.+|+|+++||. .....++......+++.||+|++++.....+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 56777888876 6679999999994 1123334466778899999999965543222
Q ss_pred CCchhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCCCCCCCCc
Q 004475 573 PNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 573 ~~~~~~~~~~~d~~~~v~~l~~~--------~~id~~~i~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~~~~d~~~~~ 642 (751)
....+.++++.++++||.+. -..+..+++++|||.||..|..+|+.+. -.|.++|.+.|+.-.....
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12245678888999999763 1246679999999999999999998662 2477888777763211100
Q ss_pred cCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCC----CCC-CCCh--HHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 643 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD----DKV-GLFP--MQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D----~~v-p~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
... +. ...+.|. --++..|+++|-..-- ... ||.+ .+=++|+...+ .++...+-.+-
T Consensus 164 ---~t~-------P~-iLty~p~--SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dY 227 (307)
T PF07224_consen 164 ---QTP-------PP-ILTYVPQ--SFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDY 227 (307)
T ss_pred ---CCC-------CC-eeecCCc--ccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeeccc
Confidence 000 00 0001111 1135689888765443 111 1212 23456776654 45566666777
Q ss_pred CCcC
Q 004475 716 HHVY 719 (751)
Q Consensus 716 ~H~~ 719 (751)
||.-
T Consensus 228 GHmD 231 (307)
T PF07224_consen 228 GHMD 231 (307)
T ss_pred cccc
Confidence 8853
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-06 Score=78.04 Aligned_cols=249 Identities=11% Similarity=0.111 Sum_probs=151.2
Q ss_pred CCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeeccCCCCccccceeeeeEEecCCcEEEE
Q 004475 27 YPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (751)
Q Consensus 27 ~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 103 (751)
+++.. .+....|+|||..+|-- ....+|+++++.+-. .-.+. +. .+.+..+.|++||..|+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSg----------G~Dr~I~LWnv~gdceN~~~lk-gH----sgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASG----------GSDRAIVLWNVYGDCENFWVLK-GH----SGAVMELHGMRDGSHILS 107 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeec----------CCcceEEEEeccccccceeeec-cc----cceeEeeeeccCCCEEEE
Confidence 44433 57889999999999884 445788888876533 22222 11 124778999999999987
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEee
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAV 180 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~ 180 (751)
.+.+ ..++.+|+ +| ..++...+ .-+..+
T Consensus 108 ~gtD-------------------------------------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 108 CGTD-------------------------------------------------KTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred ecCC-------------------------------------------------ceEEEEecccceeeehhccccceeeec
Confidence 7443 47888999 88 45555555 334455
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
..+.-|-.++-+..+ ..++.+||...++..++... ..++.++.|..++.. +...
T Consensus 139 ~p~rrg~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~-------------kyqltAv~f~d~s~q-v~sg 192 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSD------------DGTLKLWDIRKKEAIKTFEN-------------KYQLTAVGFKDTSDQ-VISG 192 (338)
T ss_pred CccccCCeEEEecCC------------CceEEEEeecccchhhcccc-------------ceeEEEEEecccccc-eeec
Confidence 556666666665443 34688999987654433211 123457888888887 3331
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc-e
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP-R 338 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~ 338 (751)
- -.+.|-++|+- . ......+......+. ++.||+|..+.-.+.. ..-.+|-+.+--. +.+ .
T Consensus 193 g------------Idn~ikvWd~r-~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd--~tvrvwd~rp~~p-~~R~v 255 (338)
T KOG0265|consen 193 G------------IDNDIKVWDLR-K-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMD--NTVRVWDVRPFAP-SQRCV 255 (338)
T ss_pred c------------ccCceeeeccc-c-CcceEEeecccCceeeEEeccCCCcccccccc--ceEEEEEecccCC-CCceE
Confidence 1 12456666662 1 123444455555666 8899999988654432 2345666655443 222 3
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
.+............- .-+|||+++.+.+.+.+ ..+|+||..+..
T Consensus 256 ~if~g~~hnfeknlL--~cswsp~~~~i~ags~d---------------------r~vyvwd~~~r~ 299 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLL--KCSWSPNGTKITAGSAD---------------------RFVYVWDTTSRR 299 (338)
T ss_pred EEeecchhhhhhhcc--eeeccCCCCcccccccc---------------------ceEEEeeccccc
Confidence 344333322111000 15699999999888844 388999987643
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-07 Score=100.28 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred eeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc
Q 004475 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA 168 (751)
Q Consensus 89 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~ 168 (751)
+..++.||||+.++|......... ...++||+++..|+.
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~-----------------------------------------d~~s~Lwv~~~gg~~ 390 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAP-----------------------------------------DPASSLWVGPLGGVA 390 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCC-----------------------------------------CcceEEEEEeCCCcc
Confidence 568899999999999953211100 022699999987777
Q ss_pred eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceee
Q 004475 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 169 ~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
++++.......+.|||||+.|+|.+..+...+.. ......++++.++++++.++ .. ...+..+.
T Consensus 391 ~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~-~~~~~gql~~~~vd~ge~~~--~~-------------~g~Issl~ 454 (591)
T PRK13616 391 VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI-RDPATGQLARTPVDASAVAS--RV-------------PGPISELQ 454 (591)
T ss_pred eeeecCCCCCCceECCCCCceEEEecCcceEEEe-ccCCCceEEEEeccCchhhh--cc-------------CCCcCeEE
Confidence 8888775588999999999999986542211100 11113567777777665543 11 12356899
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-----eEeEeecee-EE-EEEecCCceEEEeeeeccc
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLR-FS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~l~~~~~~-~~-~~~spdg~~l~~~~~~~~~ 321 (751)
|||||++ |+++. .++|++-.+...+++.. ..+...... .. +.|..|+.. +..+. ..
T Consensus 455 wSpDG~R-iA~i~-------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~--~~ 517 (591)
T PRK13616 455 LSRDGVR-AAMII-------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRS--DP 517 (591)
T ss_pred ECCCCCE-EEEEE-------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEec--CC
Confidence 9999999 66654 14677722211113332 224433333 35 899999994 44432 34
Q ss_pred ceeEEEecCCCC
Q 004475 322 QTRTWLVCPGSK 333 (751)
Q Consensus 322 ~~~l~~~~~~~~ 333 (751)
...+|.+++++.
T Consensus 518 ~~~v~~v~vDG~ 529 (591)
T PRK13616 518 EHPVWYVNLDGS 529 (591)
T ss_pred CCceEEEecCCc
Confidence 467999999985
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-06 Score=82.83 Aligned_cols=294 Identities=11% Similarity=0.066 Sum_probs=162.0
Q ss_pred cccceeecCCCCeEEEEEeecc---c--ccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDE---E--DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~---~--~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.+....|||.|++|..-++.+. + ........+++++|.++|....-....... ..+...+.||-|.+++|....
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhhcc
Confidence 4678889999999988776322 1 122234458999999888755443322211 001225688888888776521
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC----CceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT----PAVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~----~~~~~~~~~ 182 (751)
..|++.++++...++.- ..++.++.|
T Consensus 152 --------------------------------------------------~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 152 --------------------------------------------------SSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred --------------------------------------------------CeEEEEecCCccccCchhhccccceeeEEe
Confidence 46777777553333221 267889999
Q ss_pred CCCC--ceEEEEEecCCcccccccCCCceeEEEEeCCCce-ee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceE
Q 004475 183 SPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (751)
Q Consensus 183 SpDG--~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i 257 (751)
||-| ..|+|...... .-+..+.++.+..+. +. .+.... --.+.|.+.|++++
T Consensus 182 sP~~n~~~la~~tPEk~--------~kpa~~~i~sIp~~s~l~tk~lfk~~---------------~~qLkW~~~g~~ll 238 (561)
T COG5354 182 SPEGNHDELAYWTPEKL--------NKPAMVRILSIPKNSVLVTKNLFKVS---------------GVQLKWQVLGKYLL 238 (561)
T ss_pred cCCCCCceEEEEccccC--------CCCcEEEEEEccCCCeeeeeeeEeec---------------ccEEEEecCCceEE
Confidence 9975 44566543321 113345555554221 11 111111 12689999999966
Q ss_pred EEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCc
Q 004475 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 336 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (751)
+.+...- .....--....||++++. +..........+.+. +.|.|+++.++..+...+ ..+-..++.+.
T Consensus 239 ~l~~t~~--ksnKsyfgesnLyl~~~~---e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N--- 308 (561)
T COG5354 239 VLVMTHT--KSNKSYFGESNLYLLRIT---ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN--- 308 (561)
T ss_pred EEEEEee--ecccceeccceEEEEeec---ccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc---
Confidence 5544221 000011122589999985 333333224456667 999999999887773322 23444555552
Q ss_pred ceeee-ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 337 PRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 337 ~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
.+-.. ....+. +.|||.++++++...+. .+..+-.||..+. ...+..-.
T Consensus 309 l~~~~Pe~~rNT---------~~fsp~~r~il~agF~n------------------l~gni~i~~~~~r-f~~~~~~~-- 358 (561)
T COG5354 309 LRFYFPEQKRNT---------IFFSPHERYILFAGFDN------------------LQGNIEIFDPAGR-FKVAGAFN-- 358 (561)
T ss_pred eEEecCCccccc---------ccccCcccEEEEecCCc------------------cccceEEeccCCc-eEEEEEee--
Confidence 12211 111111 66999999999987442 2224555566532 22221111
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCC
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKT 448 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 448 (751)
......+.|||||+.+.....+..
T Consensus 359 ---------~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 359 ---------GLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ---------cCCceEeeccCCceEEEecCCCcc
Confidence 111234789999998777665543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-06 Score=84.07 Aligned_cols=303 Identities=13% Similarity=0.105 Sum_probs=158.1
Q ss_pred cccceeecCCCCeEEEEEeecc-cccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDE-EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~-~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+....|||.-++|+..+.... ...+...+.+|.|+|+.+|..++-....... .....-+.||-|++++|-...+.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm~~~s-- 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARMTGNS-- 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEeccce--
Confidence 4777888888888877664211 0111145679999999999876654332111 11123569999999988662210
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCCceEEeeeeCCCCceEE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
+.+++ ...+.+++ ++...+ .++.++.|||-+..|+
T Consensus 328 -------------isIyE---------------------------tpsf~lld--~Kslki---~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 328 -------------ISIYE---------------------------TPSFMLLD--KKSLKI---SGIRDFSWSPTSNLLA 362 (698)
T ss_pred -------------EEEEe---------------------------cCceeeec--ccccCC---ccccCcccCCCcceEE
Confidence 00000 01222222 222222 5788999999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCC--ceeeeecCCCceEEEEEeccCCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM--RSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|-...... .+..+-+..+-+++..+..+. .++ -.+.|-.+|.+|-+.+.......
T Consensus 363 Ywtpe~~~--------~parvtL~evPs~~~iRt~nl--------------fnVsDckLhWQk~gdyLcvkvdR~tK~~- 419 (698)
T KOG2314|consen 363 YWTPETNN--------IPARVTLMEVPSKREIRTKNL--------------FNVSDCKLHWQKSGDYLCVKVDRHTKSK- 419 (698)
T ss_pred EEcccccC--------CcceEEEEecCccceeeeccc--------------eeeeccEEEeccCCcEEEEEEEeecccc-
Confidence 97644211 123334444433322111000 011 15799999999444443221111
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc-cceeEEEecCCCCCCcceeeeecccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
....-..-+|+.+.-. ..+.........+- ++|-|.|..++..+.... ..-..|.+.... ..+..+......
T Consensus 420 ~~g~f~n~eIfrireK----dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREK----DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDKK 493 (698)
T ss_pred ccceEeeEEEEEeecc----CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhccc
Confidence 0000011245555432 23333334444444 899999999987764322 334566666544 233333222222
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 426 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 426 (751)
.+.. +.|||-|++++.+...+ .+..|.-+|.+-...+.+-..+ + .
T Consensus 494 ~~N~------vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e------h-----~ 538 (698)
T KOG2314|consen 494 FANT------VFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE------H-----F 538 (698)
T ss_pred ccce------EEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc------c-----c
Confidence 2222 77999999999988542 3335666676532333222211 1 1
Q ss_pred CCcceeeccCCCEEEEEEec
Q 004475 427 GQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 427 ~~~~~~~s~dg~~l~~~~~~ 446 (751)
....+.|.|.|++++-..+.
T Consensus 539 ~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 539 AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccccceECCCCCEEEEeeeh
Confidence 12335799999877655433
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-07 Score=96.45 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=105.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHH
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLA 620 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~----~a~ 620 (751)
.+..+|+++||.|+.++.. ..+ .... ....++.++.+.++++.+++.. ...+|.++|+|+||.+++. +++
T Consensus 238 SlVr~lv~qG~~VflIsW~-nP~--~~~r-~~~ldDYv~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWR-NPD--KAHR-EWGLSTYVDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred hHHHHHHHcCCeEEEEeCC-CCC--hhhc-CCCHHHHHHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHh
Confidence 5677899999999995552 222 1211 1223555567888899888764 3468999999999999997 677
Q ss_pred hCCC-ceeEEEEccCCCCCCCCc-cC-ccc------------------------------ccc-----------------
Q 004475 621 HAPH-LFCCGIARSGSYNKTLTP-FG-FQT------------------------------EFR----------------- 650 (751)
Q Consensus 621 ~~p~-~~~~~v~~~~~~d~~~~~-~~-~~~------------------------------~~~----------------- 650 (751)
++++ +++.++++....|..... .. +.. ...
T Consensus 312 ~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~ 391 (560)
T TIGR01839 312 LGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPP 391 (560)
T ss_pred cCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcc
Confidence 7775 799999888877743210 00 000 000
Q ss_pred ----cchhh-------------HHHHHhcCccc-----------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 651 ----TLWEA-------------TNVYIEMSPIT-----------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 651 ----~~~~~-------------~~~~~~~~~~~-----------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
..|.. .+.|.++...+ .+.+|++|+|++.|+.|.++| +..+..+.+.+.
T Consensus 392 ~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvP--w~s~~~~~~l~g- 468 (560)
T TIGR01839 392 AFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITP--WDAVYRSALLLG- 468 (560)
T ss_pred hhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCC--HHHHHHHHHHcC-
Confidence 00100 01222222221 356789999999999999999 898888877663
Q ss_pred CCCcEEEEEeCCCCCc
Q 004475 703 HGALSRLVLLPFEHHV 718 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~ 718 (751)
.++++++.++ ||.
T Consensus 469 --s~~~fvl~~g-GHI 481 (560)
T TIGR01839 469 --GKRRFVLSNS-GHI 481 (560)
T ss_pred --CCeEEEecCC-Ccc
Confidence 3578888865 684
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=87.16 Aligned_cols=250 Identities=13% Similarity=0.165 Sum_probs=138.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC----ccccceeeeeEEecCCcEEEEeecC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD----ICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~----~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+..++|||||++|+.-+. ++--.+| +--+|+.+.=..... .-+...+....||.|++.|+..+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSv--------DGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV--------DGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred chhheeeCCCCceEeeccc--------cceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence 4567899999999988432 4444555 444676543221111 1112235567899999988866432
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCC-C-ceEEeeeeC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-P-AVYTAVEPS 183 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~-~-~~~~~~~~S 183 (751)
+.|.++.+ +| -.+++.. + .++..+.||
T Consensus 285 -------------------------------------------------GkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 285 -------------------------------------------------GKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred -------------------------------------------------CcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 34555555 67 4455542 2 788899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
.|+.+|+-.+.+ ..+.+.-+..++ ++.. ......+.+..|++||.+ |+-++
T Consensus 316 rD~SqiLS~sfD-------------~tvRiHGlKSGK~LKEf-------------rGHsSyvn~a~ft~dG~~-iisaS- 367 (508)
T KOG0275|consen 316 RDNSQILSASFD-------------QTVRIHGLKSGKCLKEF-------------RGHSSYVNEATFTDDGHH-IISAS- 367 (508)
T ss_pred cCcchhhccccc-------------ceEEEeccccchhHHHh-------------cCccccccceEEcCCCCe-EEEec-
Confidence 999999876543 234444444332 2211 222234557799999999 65554
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+.+.+|+.+. +...... ...+..+. +..-|-+---.... +..+.+|++++.+. -.+.
T Consensus 368 -----------sDgtvkvW~~Kt--teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC---Nrsntv~imn~qGQ--vVrs 429 (508)
T KOG0275|consen 368 -----------SDGTVKVWHGKT--TECLSTFKPLGTDYPVNSVILLPKNPEHFIVC---NRSNTVYIMNMQGQ--VVRS 429 (508)
T ss_pred -----------CCccEEEecCcc--hhhhhhccCCCCcccceeEEEcCCCCceEEEE---cCCCeEEEEeccce--EEee
Confidence 224566666531 1111111 11222333 33334332211222 23468999999883 2222
Q ss_pred eeecccccccCCCCCCC-eeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 340 LFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~-~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
...+.... +.+. -..||-|.|++....+ ..||-+...+|+..+....
T Consensus 430 fsSGkREg-----GdFi~~~lSpkGewiYcigED---------------------~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 430 FSSGKREG-----GDFINAILSPKGEWIYCIGED---------------------GVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred eccCCccC-----CceEEEEecCCCcEEEEEccC---------------------cEEEEEEeecCceeeeeec
Confidence 22222111 1111 4479999999888743 2788888888887655443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-07 Score=86.88 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=82.6
Q ss_pred ceeEEeecCCCCCCC---CcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEE------cCC---
Q 004475 5 TGIGIHRLLPDDSLG---PEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD------AET--- 71 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g---~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~------~~~--- 71 (751)
.+|.+|-+..+..+| +...+..|..+. .+.-.+|||+|..+|-... ++..-||... .++
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D--------~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD--------GGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC--------CceEEEEEecCcCCccccchhh
Confidence 456666665544555 444555555543 6788999999999998431 3445555444 112
Q ss_pred --CC---eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCcc
Q 004475 72 --GE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEY 146 (751)
Q Consensus 72 --g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (751)
.+ .+....+. ...+-.++|+||+..+.+.+.+
T Consensus 108 ~~ke~w~v~k~lr~h----~~diydL~Ws~d~~~l~s~s~d--------------------------------------- 144 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH----RDDIYDLAWSPDSNFLVSGSVD--------------------------------------- 144 (434)
T ss_pred hCccceEEEEEeccc----ccchhhhhccCCCceeeeeecc---------------------------------------
Confidence 00 00000000 0124467999999999988543
Q ss_pred chhhhhhheeeEEEEEcC-CCCceecCCC--ceEEeeeeCCCCceEEEEEecC
Q 004475 147 DESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~-~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..++++|+ .|+...+.+. ..++.++|.|-+++|+..+.++
T Consensus 145 ----------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 ----------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ----------ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 46778888 7865555444 6678999999999999887665
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-06 Score=86.51 Aligned_cols=266 Identities=12% Similarity=0.142 Sum_probs=159.5
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
.....||.. ..||. .....||+++..+|+..+|...... .+..+.|+++|+.|+.....
T Consensus 180 ~nlldWss~-n~laV-----------alg~~vylW~~~s~~v~~l~~~~~~----~vtSv~ws~~G~~LavG~~~----- 238 (484)
T KOG0305|consen 180 LNLLDWSSA-NVLAV-----------ALGQSVYLWSASSGSVTELCSFGEE----LVTSVKWSPDGSHLAVGTSD----- 238 (484)
T ss_pred hhHhhcccC-CeEEE-----------EecceEEEEecCCCceEEeEecCCC----ceEEEEECCCCCEEEEeecC-----
Confidence 345678843 35666 3447999999999999998766421 47899999999999988432
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCC-C-ceEEeeeeCCCCce
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~-~-~~~~~~~~SpDG~~ 188 (751)
+.+.++|. +- .++.+.. + ..+..++|. +.
T Consensus 239 --------------------------------------------g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~- 271 (484)
T KOG0305|consen 239 --------------------------------------------GTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS- 271 (484)
T ss_pred --------------------------------------------CeEEEEehhhccccccccCCcCceeEEEecc--Cc-
Confidence 46777777 33 5555655 4 778899998 32
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++..... ...|..+|+...+...-+ +......+-.+.|++||++ ++-
T Consensus 272 ~lssGsr------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~-lAS--------- 318 (484)
T KOG0305|consen 272 VLSSGSR------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQ-LAS--------- 318 (484)
T ss_pred eEEEecC------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCe-ecc---------
Confidence 2222111 234556665533211000 1122234557899999987 222
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN 347 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 347 (751)
-...+.++++|.. .......+.++.+.+- ++|+|=..-|+.+... .....|...+..++ ......+...+
T Consensus 319 ---GgnDN~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g--~~i~~vdtgsQ- 389 (484)
T KOG0305|consen 319 ---GGNDNVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTG--ARIDSVDTGSQ- 389 (484)
T ss_pred ---CCCccceEeccCC--CccccEEEeccceeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCC--cEecccccCCc-
Confidence 1133578888873 1234566677777887 9999987776554422 33456777777664 22222222222
Q ss_pred ccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecC
Q 004475 348 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 427 (751)
Q Consensus 348 ~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 427 (751)
+.+ +.||+..+-|+... |. .+..|.+|...+-+......... .++..+
T Consensus 390 Vcs------L~Wsk~~kEi~sth---------------G~----s~n~i~lw~~ps~~~~~~l~gH~----~RVl~l--- 437 (484)
T KOG0305|consen 390 VCS------LIWSKKYKELLSTH---------------GY----SENQITLWKYPSMKLVAELLGHT----SRVLYL--- 437 (484)
T ss_pred eee------EEEcCCCCEEEEec---------------CC----CCCcEEEEeccccceeeeecCCc----ceeEEE---
Confidence 222 88999999887766 11 22356666665544333322221 123333
Q ss_pred CcceeeccCCCEEEEEE
Q 004475 428 QGEEDINLNQLKILTSK 444 (751)
Q Consensus 428 ~~~~~~s~dg~~l~~~~ 444 (751)
++||||..++...
T Consensus 438 ----a~SPdg~~i~t~a 450 (484)
T KOG0305|consen 438 ----ALSPDGETIVTGA 450 (484)
T ss_pred ----EECCCCCEEEEec
Confidence 8999998877654
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-07 Score=91.82 Aligned_cols=241 Identities=16% Similarity=0.142 Sum_probs=152.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC--chHHHHHHhCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARR 554 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G 554 (751)
..++.|...+.+.||. |-..--.|... +++|+|++.||- .++...|...+ ..++-.|+++|
T Consensus 44 ~gy~~E~h~V~T~DgY-iL~lhRIp~~~-----~~rp~Vll~HGL-----------l~sS~~Wv~n~p~~sLaf~LadaG 106 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGY-ILTLHRIPRGK-----KKRPVVLLQHGL-----------LASSSSWVLNGPEQSLAFLLADAG 106 (403)
T ss_pred cCCceEEEEEEccCCe-EEEEeeecCCC-----CCCCcEEEeecc-----------ccccccceecCccccHHHHHHHcC
Confidence 3477999999999987 44444446542 468999999994 22223332222 24556788999
Q ss_pred eEEEEcCCCCCCCCCCC-----------CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 555 FAVLAGPSIPIIGEGDK-----------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~-----------~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
|.|-..+.|+ ..+++. +..-.+.+-...|+-+.|+++.+.. ...++..+|||+|+.....++...|
T Consensus 107 YDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p 183 (403)
T KOG2624|consen 107 YDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERP 183 (403)
T ss_pred CceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccc
Confidence 9998855543 222221 1112234456789999999998864 3579999999999999998888876
Q ss_pred C---ceeEEEEccCCCCCCCC---------c-----------cC----cccc-----------ccc--------------
Q 004475 624 H---LFCCGIARSGSYNKTLT---------P-----------FG----FQTE-----------FRT-------------- 651 (751)
Q Consensus 624 ~---~~~~~v~~~~~~d~~~~---------~-----------~~----~~~~-----------~~~-------------- 651 (751)
+ +++..++++|..-.... . ++ ++.. ...
T Consensus 184 ~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~ 263 (403)
T KOG2624|consen 184 EYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLL 263 (403)
T ss_pred hhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 5 68888888886421100 0 00 0000 000
Q ss_pred ------ch--------------------------------------h---hHHHHHh-cCcccccCCCCCCEEEEEcCCC
Q 004475 652 ------LW--------------------------------------E---ATNVYIE-MSPITHANKIKKPILIIHGEVD 683 (751)
Q Consensus 652 ------~~--------------------------------------~---~~~~~~~-~~~~~~~~~~~~P~li~~G~~D 683 (751)
.| . +...|.. ..|...+.++++|+.+..|..|
T Consensus 264 ~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D 343 (403)
T KOG2624|consen 264 VGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDND 343 (403)
T ss_pred cCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCc
Confidence 00 0 0011111 1233456778999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CccccHHHHHHHHHHHHHHHh
Q 004475 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 684 ~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~l 740 (751)
.++. ++.+..+...+..... ....-+++-+|.- ...+..+.+++.+++.|....
T Consensus 344 ~l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 344 WLAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred ccCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 9998 8888878777765533 2333367878852 224457788889999888665
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-07 Score=82.21 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEE
Q 004475 601 SRIAVGGHSYGAFMTAHLL-AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
..++++|||.|+..++.++ .....+++++++.+|+..... ........ ...+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~~~----------~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPELD----------GFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCGGC----------CCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhhcc----------ccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667788999999999743100 00000000 00000 1122346779999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+++|+.+| +..+..+.+.+. .+++.++++||...
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred cCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 99999999 999999998884 46999999999764
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.6e-06 Score=77.33 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=142.4
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
...-+||+-|.+||.-. ..+.|.|+|..+-..-++..... + .+.+++||+||+.|+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc----------~nG~vvI~D~~T~~iar~lsaH~---~-pi~sl~WS~dgr~LltsS~D----- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC----------ANGRVVIYDFDTFRIARMLSAHV---R-PITSLCWSRDGRKLLTSSRD----- 86 (405)
T ss_pred cceEEeccCcceeeeec----------cCCcEEEEEccccchhhhhhccc---c-ceeEEEecCCCCEeeeecCC-----
Confidence 56678999999999843 34677778877755333322222 2 27799999999999877543
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCCceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~ 190 (751)
..+.++|+ +| -.+++.-...+....|.|-.+..+
T Consensus 87 --------------------------------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 87 --------------------------------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred --------------------------------------------ceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 46778888 77 345554446677888888665444
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC-CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
+...-+. .-++.+......+.|...+ +..+ ...+...|.+-|++ |+...
T Consensus 123 va~~~~~------------sp~vi~~s~~~h~~Lp~d~d~dln---------~sas~~~fdr~g~y-IitGt-------- 172 (405)
T KOG1273|consen 123 VATIMEE------------SPVVIDFSDPKHSVLPKDDDGDLN---------SSASHGVFDRRGKY-IITGT-------- 172 (405)
T ss_pred EEEEecC------------CcEEEEecCCceeeccCCCccccc---------cccccccccCCCCE-EEEec--------
Confidence 4332211 1234444433333332221 1111 11123368888998 55432
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEec-CCC--CCCccee------
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC-PGS--KDVAPRV------ 339 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~-~~~--~~~~~~~------ 339 (751)
.++.|.+++.+..+=-....++. ...+. ..++-.|+.|++.+.. +-.+.|-.. +.. ..+++..
T Consensus 173 ----sKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsD--RvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 173 ----SKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSD--RVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred ----CcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCC--ceEEEEehhhhcccCccCCcChhHHHHH
Confidence 34678888775211011111222 12344 7788999998886522 212233221 221 1112211
Q ss_pred eeecc-cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 340 LFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 340 l~~~~-~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
+.+.. ... ..||.||.+|+..+ ...-.||.|....|.+.++.....
T Consensus 246 vVNk~~Wk~---------ccfs~dgeYv~a~s--------------------~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 246 VVNKLQWKK---------CCFSGDGEYVCAGS--------------------ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHhhhhhhh---------eeecCCccEEEecc--------------------ccceeEEEEecCCcceeeeecCCc
Confidence 11111 111 66899999987766 234589999999999988877654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-06 Score=86.59 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=138.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
..++.+++.. ..+...+|. ..++..-.+||-+.- ||+-. .+........+||-+.. .+.-..+..-..
T Consensus 146 nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyv---Pe~kGaPa~vri~~~~~-~~~~~~~a~ksF 215 (566)
T KOG2315|consen 146 NEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYV---PEKKGAPASVRIYKYPE-EGQHQPVANKSF 215 (566)
T ss_pred ceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEc---cCCCCCCcEEEEecccc-ccccchhhhccc
Confidence 3677777766 445555554 235778888887543 44322 22222344566666652 233223311110
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
+...--.+.|.+-|+-|+.+... ..|.....||+...||++
T Consensus 216 --Fkadkvqm~WN~~gt~LLvLast-------------------------------------dVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 216 --FKADKVQMKWNKLGTALLVLAST-------------------------------------DVDKTNASYYGEQTLYLL 256 (566)
T ss_pred --cccceeEEEeccCCceEEEEEEE-------------------------------------eecCCCccccccceEEEE
Confidence 00011267899999887776321 123334456777899999
Q ss_pred cCCCC--ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 163 SLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 163 ~~~G~--~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+.+|+ ..+|...+.++++.|+|+|+.+++. .+-.+..+-++|+++..+-.+..++..
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv-----------yGfMPAkvtifnlr~~~v~df~egpRN---------- 315 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVV-----------YGFMPAKVTIFNLRGKPVFDFPEGPRN---------- 315 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEE-----------EecccceEEEEcCCCCEeEeCCCCCcc----------
Confidence 99883 4566655889999999999998887 333456788899988765544333322
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE-E-EEEecCCceEEEee
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-S-VSWCDDSLALVNET 316 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~-~-~~~spdg~~l~~~~ 316 (751)
.+-|||.|+. |+++. ..+ .++++-++|+. ..+.|......- . +.|+|||++|+.++
T Consensus 316 -----~~~fnp~g~i-i~lAG-------FGN--L~G~mEvwDv~-----n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 316 -----TAFFNPHGNI-ILLAG-------FGN--LPGDMEVWDVP-----NRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred -----ceEECCCCCE-EEEee-------cCC--CCCceEEEecc-----chhhccccccCCceEEEEcCCCcEEEEEe
Confidence 6799999998 67654 111 45788888884 245555554433 4 89999999988765
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-06 Score=80.15 Aligned_cols=139 Identities=22% Similarity=0.186 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhH
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 656 (751)
|...+.+++.. |+.++..++.++.+|+|||+||.+++.+...+|+.|.+.++.+|..-+ .+.
T Consensus 116 f~~fL~~~lkP---~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw---------------~n~ 177 (264)
T COG2819 116 FREFLTEQLKP---FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW---------------HNE 177 (264)
T ss_pred HHHHHHHhhHH---HHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh---------------CCH
Confidence 33444443333 333456688899999999999999999999999999999999995322 112
Q ss_pred HHHHhcCcccccCCCCCCEEEEEcCCCCCCC----CChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCCccccHHHHHHH
Q 004475 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVG----LFPMQAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWE 731 (751)
Q Consensus 657 ~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 731 (751)
..+.........+..++-+++-.|+.|.... .....+.+..+.+.. .+....+..+|+.+|.-. ....+..
T Consensus 178 ~~l~~~~~~~~~~~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~ 253 (264)
T COG2819 178 AILREIESLKLLKTKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGSV----IHASLPS 253 (264)
T ss_pred HHhccccccccCCCcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccch----HHHHHHH
Confidence 2222222222221222334444444443211 013334444455555 778889999998888643 3344445
Q ss_pred HHHHHH
Q 004475 732 TDRWLQ 737 (751)
Q Consensus 732 ~~~fl~ 737 (751)
++.|+.
T Consensus 254 al~~l~ 259 (264)
T COG2819 254 ALRFLD 259 (264)
T ss_pred HHHhhh
Confidence 555554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=88.30 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=131.4
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|...|..||+.+-++.-+.-+...-.+...+.+.+|||.|..|+.++ +..+..++|-+|-+......+.
T Consensus 186 s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs----------g~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 186 SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS----------GSAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe----------cCcceeEEccCCceeeeeeccc
Confidence 566788999999844444443322222233688999999999999985 4456666666655544443332
Q ss_pred Ccc-------c-cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhh
Q 004475 82 DIC-------L-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (751)
Q Consensus 82 ~~~-------~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (751)
.+. . -..+..-+|.|+.+..+.+... +
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-D-------------------------------------------- 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-D-------------------------------------------- 290 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEecC-C--------------------------------------------
Confidence 211 0 0124456899999877766321 0
Q ss_pred heeeEEEEEcCCC-Cceec---CCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 154 YTTAQLVLGSLDG-TAKDF---GTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 154 ~~~~~l~~~~~~G-~~~~l---t~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
++-.||-++-.. +.+-+ +.. -.+...+|+|||+.|+-...+ ..|.+|+..+-..+....
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-------------GSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-------------GSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC-------------CceeeeecCCcccccceE
Confidence 112333333222 21111 111 235688999999998765443 357778763222211100
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee--EE-E
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FS-V 303 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-~ 303 (751)
..-+ ......+.+++||+||++ |+-.. ..+.|-+||+.... .....-+...-. -. .
T Consensus 357 vk~A-------H~~g~~Itsi~FS~dg~~-LlSRg------------~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 357 VKDA-------HLPGQDITSISFSYDGNY-LLSRG------------FDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred eeec-------cCCCCceeEEEeccccch-hhhcc------------CCCceeeeeccccc-cchhhhcCCCccCCCCcc
Confidence 0000 011124678999999998 33321 23578888874221 111111111111 12 6
Q ss_pred EEecCCceEEEeeee--cccceeEEEecCCC
Q 004475 304 SWCDDSLALVNETWY--KTSQTRTWLVCPGS 332 (751)
Q Consensus 304 ~~spdg~~l~~~~~~--~~~~~~l~~~~~~~ 332 (751)
.||||.+.|+..+.. ......|+.++..+
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 899999988776532 22334688888766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-06 Score=80.12 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=115.4
Q ss_pred eEEEEEcCCC-CceecCCCceEEeeeeC-CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~~~~~~~~~S-pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..|+.++..+ +.+.+..+. ...+.+. +||+ |++.... .+.++|..+++.+.+...+....
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~-- 83 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG--------------GIAVVDPDTGKVTVLADLPDGGV-- 83 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT--------------CEEEEETTTTEEEEEEEEETTCS--
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC--------------ceEEEecCCCcEEEEeeccCCCc--
Confidence 5899999955 443333223 5566666 6755 4444322 35566888887776655421100
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
.......++++|||+ |+++.......... ..+.||+++.+ +....+...-.... ++|+|||+.|+
T Consensus 84 -----~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~~----~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 84 -----PFNRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDPD----GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp -----CTEEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEETT----SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred -----ccCCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECCC----CeEEEEecCcccccceEECCcchhee
Confidence 112244789999998 67765432211110 11679999874 23444443333334 89999999888
Q ss_pred EeeeecccceeEEEecCCCCCC---cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 390 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (751)
+.. +...+||.++++.... ..+.+....... . ..--+++..+|+ |+....
T Consensus 150 v~d---s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g--~pDG~~vD~~G~-l~va~~------------------- 202 (246)
T PF08450_consen 150 VAD---SFNGRIWRFDLDADGGELSNRRVFIDFPGGP--G--YPDGLAVDSDGN-LWVADW------------------- 202 (246)
T ss_dssp EEE---TTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--C--EEEEEEEBTTS--EEEEEE-------------------
T ss_pred ecc---cccceeEEEeccccccceeeeeeEEEcCCCC--c--CCCcceEcCCCC-EEEEEc-------------------
Confidence 755 3446799999865312 112222211110 0 000166778885 333331
Q ss_pred CCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceee-ccCCCEEEEEE
Q 004475 391 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSK 444 (751)
Q Consensus 391 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~ 444 (751)
....|++++.+ |+.......... .+. .++| .+|.++|+++.
T Consensus 203 -~~~~I~~~~p~-G~~~~~i~~p~~----~~t-------~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 -GGGRIVVFDPD-GKLLREIELPVP----RPT-------NCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -TTTEEEEEETT-SCEEEEEE-SSS----SEE-------EEEEESTTSSEEEEEE
T ss_pred -CCCEEEEECCC-ccEEEEEcCCCC----CEE-------EEEEECCCCCEEEEEe
Confidence 23378888987 666554443311 122 2456 46778888775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=93.05 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=123.2
Q ss_pred ceeEEeecCCCCCCCCcc--cccCCCCcccccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEK--EVHGYPDGAKINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~--~l~~~~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
..|++|++.....++... .+..+.....+....|+|. +++||.. .....|.++|+.+++........
T Consensus 505 ~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~----------~~Dg~v~lWd~~~~~~~~~~~~H 574 (793)
T PLN00181 505 KKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASS----------NFEGVVQVWDVARSQLVTEMKEH 574 (793)
T ss_pred CEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEE----------eCCCeEEEEECCCCeEEEEecCC
Confidence 468888875411112111 1111122224677899875 6666654 34478888898877644332222
Q ss_pred CccccceeeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 82 DICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 82 ~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. ..+..++|+| |+..|+..+.+ ..|.
T Consensus 575 ~----~~V~~l~~~p~~~~~L~Sgs~D-------------------------------------------------g~v~ 601 (793)
T PLN00181 575 E----KRVWSIDYSSADPTLLASGSDD-------------------------------------------------GSVK 601 (793)
T ss_pred C----CCEEEEEEcCCCCCEEEEEcCC-------------------------------------------------CEEE
Confidence 1 1477899997 77777766432 4677
Q ss_pred EEcC-CCC-ceecCCCceEEeeee-CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCC
Q 004475 161 LGSL-DGT-AKDFGTPAVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPV 235 (751)
Q Consensus 161 ~~~~-~G~-~~~lt~~~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~ 235 (751)
++|+ ++. ...+.....+..+.| +++|+.|++.+.+ ..|++||+..... ..+.
T Consensus 602 iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~---------- 658 (793)
T PLN00181 602 LWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMI---------- 658 (793)
T ss_pred EEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC-------------CeEEEEECCCCCccceEec----------
Confidence 7777 553 233333345667788 5678888876433 4688999875431 1221
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC----CCCceEeEeeceeEE-EEEecCCc
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE----GEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
.....+..+.|+ |+.. |+..+ ..+.|.++++.... ......+........ +.|+|+++
T Consensus 659 ---~h~~~V~~v~f~-~~~~-lvs~s------------~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 659 ---GHSKTVSYVRFV-DSST-LVSSS------------TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred ---CCCCCEEEEEEe-CCCE-EEEEE------------CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence 112235577887 6665 44433 23467777763110 112233333344445 88999999
Q ss_pred eEEEeeeecccceeEEEecCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+|+.++. ...+++++...
T Consensus 722 ~lasgs~----D~~v~iw~~~~ 739 (793)
T PLN00181 722 YIATGSE----TNEVFVYHKAF 739 (793)
T ss_pred EEEEEeC----CCEEEEEECCC
Confidence 8887662 23455555443
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=83.17 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=128.9
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
..++..||..+.+..|...+. .+-.+++-|+ .+.+..+ +..++...+.+||.|+. +
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~-------~~g~~~va~a-----------~Gv~~~f---YRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGK-------ASGRLVVAGA-----------TGVGQYF---YRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccccCCCC-------CCCcEEeccc-----------CCcchhH---hHHHHHHhhccCceEEE---E
Confidence 456677888888888754431 2322333332 1111111 12345566779999999 6
Q ss_pred CCCCCCCCCC------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE-EEccC--
Q 004475 564 PIIGEGDKLP------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG-IARSG-- 634 (751)
Q Consensus 564 ~~~g~g~~~~------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~-v~~~~-- 634 (751)
+++|.|++.. ...+.+-...|+..+|+++++.. .......+|||+||.+...+. +++ ++.+. +.-++
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 6667776533 23455666799999999998753 245789999999999775444 443 33222 22221
Q ss_pred ---CCC------------CCCCccCcccc-------------c---ccc---hhhHHHHHhcCc-----ccccCCCCCCE
Q 004475 635 ---SYN------------KTLTPFGFQTE-------------F---RTL---WEATNVYIEMSP-----ITHANKIKKPI 675 (751)
Q Consensus 635 ---~~d------------~~~~~~~~~~~-------------~---~~~---~~~~~~~~~~~~-----~~~~~~~~~P~ 675 (751)
... ....+..+... . ... |+....|....| .+..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 111 00000000000 0 001 111111111111 11235678999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC----CCcCCccccHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE----HHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~fl 736 (751)
+.+...+|+-+| +.....+.+...++ +++++.++.. ||.-...+..+...++++.||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 88888888777654 6677777654 887655665677888888887
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-07 Score=90.02 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=143.6
Q ss_pred cccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCC-CCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.++...|.| -|..|+-. .....|+++++-+ ++..+-..+.. ..+..++||.+|..++..+.+
T Consensus 216 gvsai~~fp~~~hLlLS~----------gmD~~vklW~vy~~~~~lrtf~gH~----k~Vrd~~~s~~g~~fLS~sfD-- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSG----------GMDGLVKLWNVYDDRRCLRTFKGHR----KPVRDASFNNCGTSFLSASFD-- 279 (503)
T ss_pred ccchhhhccceeeEEEec----------CCCceEEEEEEecCcceehhhhcch----hhhhhhhccccCCeeeeeecc--
Confidence 588999999 66655553 3446777777655 33222222221 147788999999988776543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCCceEEeeeeCCCCc
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQK 187 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~ 187 (751)
..|.++|+ +| ...++........+.|.||+.
T Consensus 280 -----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 280 -----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQ 312 (503)
T ss_pred -----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCC
Confidence 46778888 88 445555555666889999997
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.+++.... +..|..||..++++.+-+...+ ..+..+.|-++|++ .+.++
T Consensus 313 n~fl~G~s------------d~ki~~wDiRs~kvvqeYd~hL------------g~i~~i~F~~~g~r-FissS------ 361 (503)
T KOG0282|consen 313 NIFLVGGS------------DKKIRQWDIRSGKVVQEYDRHL------------GAILDITFVDEGRR-FISSS------ 361 (503)
T ss_pred cEEEEecC------------CCcEEEEeccchHHHHHHHhhh------------hheeeeEEccCCce-Eeeec------
Confidence 77776443 4578899999887654333221 12347799999998 33332
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE---EEEecCCceEEEeeeecccceeEEEecCCCC-CCcceeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS---VSWCDDSLALVNETWYKTSQTRTWLVCPGSK-DVAPRVLFDR 343 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~ 343 (751)
....+.+++.. ...+.........++ +.-+|.+++++..+. .+.|++..+.-. ....+..+.+
T Consensus 362 ------Ddks~riWe~~---~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 362 ------DDKSVRIWENR---IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred ------cCccEEEEEcC---CCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccccCHhhhhcc
Confidence 11234444432 112222222233333 567899998877552 234444443221 0111222222
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
. .+.+ ..-.+.|||||.+|+....+ ..++.||-++-+....+
T Consensus 429 h--~vaG--ys~~v~fSpDG~~l~SGdsd---------------------G~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 429 H--SVAG--YSCQVDFSPDGRTLCSGDSD---------------------GKVNFWDWKTTKLVSKL 470 (503)
T ss_pred e--eccC--ceeeEEEcCCCCeEEeecCC---------------------ccEEEeechhhhhhhcc
Confidence 1 1111 22227799999999887732 26777887765544333
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-07 Score=93.71 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=130.9
Q ss_pred CCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeE
Q 004475 14 PDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFV 93 (751)
Q Consensus 14 ~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ 93 (751)
.+++++..+.+.+ ....+...+||||.+.|.-.+. +....||-++ +-...-+-.+... -+-.++
T Consensus 437 D~~~~~~~~~L~G--H~GPVyg~sFsPd~rfLlScSE--------D~svRLWsl~--t~s~~V~y~GH~~----PVwdV~ 500 (707)
T KOG0263|consen 437 DDDSSGTSRTLYG--HSGPVYGCSFSPDRRFLLSCSE--------DSSVRLWSLD--TWSCLVIYKGHLA----PVWDVQ 500 (707)
T ss_pred cccCCceeEEeec--CCCceeeeeecccccceeeccC--------Ccceeeeecc--cceeEEEecCCCc----ceeeEE
Confidence 3445566666653 3446889999999999988653 4556666555 4333333222221 144667
Q ss_pred EecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC
Q 004475 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT 173 (751)
Q Consensus 94 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~ 173 (751)
|+|-|-+.+.. ..+ +...||..|-.-..+-+..
T Consensus 501 F~P~GyYFata--s~D---------------------------------------------~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 501 FAPRGYYFATA--SHD---------------------------------------------QTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred ecCCceEEEec--CCC---------------------------------------------ceeeeeecccCCchhhhcc
Confidence 89998444433 211 2257887776444444444
Q ss_pred C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
+ .++..+.|.|+..+++--+.+ ..+.+||..++...++..+ +..-+..+++||+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~G------------H~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTG------------HKGPVTALAFSPC 588 (707)
T ss_pred cccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecC------------CCCceEEEEEcCC
Confidence 5 677789999999999865433 3577999987766655432 1222558899999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
|++ |+-.+ ..+.|.+||+. ++.....+..+.+.+. ++||.||..|+.... +..-++|
T Consensus 589 Gr~-LaSg~------------ed~~I~iWDl~--~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW 646 (707)
T KOG0263|consen 589 GRY-LASGD------------EDGLIKIWDLA--NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW 646 (707)
T ss_pred Cce-Eeecc------------cCCcEEEEEcC--CCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE
Confidence 998 55533 33688899985 1233444555566666 999999999887652 2234566
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=93.47 Aligned_cols=108 Identities=10% Similarity=-0.047 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~ 588 (751)
.|++|++||.+ ++. ...|.......++ ..+|.|+++|.. +.+..... ........+++...
T Consensus 36 ~p~vilIHG~~-----------~~~--~~~~~~~l~~~ll~~~~~nVi~vD~~---~~~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWT-----------SSG--EESWISDLRKAYLSRGDYNVIVVDWG---RGANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCC-----------CCC--CCcHHHHHHHHHHhcCCCEEEEEECc---cccccChHHHHHhHHHHHHHHHHH
Confidence 58999999942 111 1122223333344 468999996553 32221110 01122345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++|.+...++.++|.++||||||++|..++.+.|++++.++++.|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88887765567789999999999999999999999999999998875
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=85.97 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=118.5
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC
Q 004475 495 TATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573 (751)
Q Consensus 495 ~~~~~~-P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~ 573 (751)
..|++. |....+.. -|+|||+||||+..... |.....+ .... .+.. ..+++..|| ...... ..
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~-------p~qi~~L-~~i~-~~l~-~~SILvLDY-sLt~~~--~~ 170 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTT-------PSQIEFL-LNIY-KLLP-EVSILVLDY-SLTSSD--EH 170 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCC-------HHHHHHH-HHHH-HHcC-CCeEEEEec-cccccc--cC
Confidence 456665 65544433 49999999998643211 1111100 0111 1222 446766555 222200 11
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--C---CceeEEEEccCCCCCCCCccC----
Q 004475 574 NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--P---HLFCCGIARSGSYNKTLTPFG---- 644 (751)
Q Consensus 574 ~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p---~~~~~~v~~~~~~d~~~~~~~---- 644 (751)
...+ +..+.++.+++++|.+.. ..++|.++|-|+||++++.++..- + ...+.+|+++|..+.......
T Consensus 171 ~~~y-PtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 171 GHKY-PTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCcC-chHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 2223 334677889999998432 247899999999999999887532 1 135899999998775421100
Q ss_pred cc-cccc--cchhh----HHHHHhc---------Cccccc---------CC--CCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 645 FQ-TEFR--TLWEA----TNVYIEM---------SPITHA---------NK--IKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 645 ~~-~~~~--~~~~~----~~~~~~~---------~~~~~~---------~~--~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+. +... ..+.. .+.|... .+..+. ++ -++-+|++.|+++.+ .++.+++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 00 0000 00000 0111111 111111 11 135799999999977 67889999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 698 DALKGHGA-----LSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 698 ~~l~~~~~-----~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+...+. ..++.+-+++.|.-. .......+-.|..
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~P----~~~~~~~~~~W~~ 364 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIGP----ILNYSRDLDKWSK 364 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCccccc----hhhhhcCHHHHhc
Confidence 99886543 367788888889642 3334444555543
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-05 Score=74.10 Aligned_cols=219 Identities=9% Similarity=0.065 Sum_probs=124.1
Q ss_pred eEEEEEcCCCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCC
Q 004475 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~ 231 (751)
.+|+++++.|. ...++-+ +.+.++.|.+||..|+-.+.++ .++.||.++++..+ ...+..-
T Consensus 69 r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-------------~v~~wD~~tG~~~rk~k~h~~~- 134 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-------------TVRGWDAETGKRIRKHKGHTSF- 134 (338)
T ss_pred ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-------------eEEEEecccceeeehhccccce-
Confidence 58888988662 3344444 7889999999999998776543 68899999775432 2111111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
+..+. |..+.+.++++.+ ..+++.++|+- ......+......+. +.|..++.
T Consensus 135 ------------vNs~~--p~rrg~~lv~Sgs----------dD~t~kl~D~R---~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 135 ------------VNSLD--PSRRGPQLVCSGS----------DDGTLKLWDIR---KKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred ------------eeecC--ccccCCeEEEecC----------CCceEEEEeec---ccchhhccccceeEEEEEeccccc
Confidence 11222 3333323444322 33577777764 222223333445555 88988888
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 390 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (751)
.+..+. ..+.|-+.++... ....+..+....+.. ++.||+|..|.-.+++
T Consensus 188 qv~sgg----Idn~ikvWd~r~~--d~~~~lsGh~DtIt~------lsls~~gs~llsnsMd------------------ 237 (338)
T KOG0265|consen 188 QVISGG----IDNDIKVWDLRKN--DGLYTLSGHADTITG------LSLSRYGSFLLSNSMD------------------ 237 (338)
T ss_pred ceeecc----ccCceeeeccccC--cceEEeecccCceee------EEeccCCCcccccccc------------------
Confidence 765432 2234444455332 224444555554444 7789999999887754
Q ss_pred CCCceeEEEecCCC---ce-eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 391 GNIPFLDLFDINTG---SK-ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 391 ~~~~~l~~~d~~~g---~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
..|.+||...- +. ..++..... .++. .+ =.++|||+++.+-+-... ..+|++|..+
T Consensus 238 ---~tvrvwd~rp~~p~~R~v~if~g~~h-nfek--nl----L~cswsp~~~~i~ags~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 238 ---NTVRVWDVRPFAPSQRCVKIFQGHIH-NFEK--NL----LKCSWSPNGTKITAGSAD----RFVYVWDTTS 297 (338)
T ss_pred ---ceEEEEEecccCCCCceEEEeecchh-hhhh--hc----ceeeccCCCCcccccccc----ceEEEeeccc
Confidence 37888887532 21 233332211 1100 01 127999999877655322 3488888654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-05 Score=72.01 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=109.3
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+.+|+-.++|.- .+...-|+++..+|+ +-.+|..+. ++..+.||-||.+|+..-.+
T Consensus 66 svFavsl~P~~~l~aTG----------GgDD~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLATGdms--- 127 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG----------GGDDLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLATGDMS--- 127 (399)
T ss_pred ceEEEEeCCCCceEEec----------CCCceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEecCCC---
Confidence 57889999977666651 223344555666776 556665554 57889999999999866221
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
+.|.+... +| ....+... ..+.-+.|.|-+.
T Consensus 128 ----------------------------------------------G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 128 ----------------------------------------------GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred ----------------------------------------------ccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 45556666 55 44445434 7888999999888
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.|+.-+. ...+|.|.+..+...++..+... + ...=.|.|||++ ++-..
T Consensus 162 illAG~~-------------DGsvWmw~ip~~~~~kv~~Gh~~---~---------ct~G~f~pdGKr-~~tgy------ 209 (399)
T KOG0296|consen 162 ILLAGST-------------DGSVWMWQIPSQALCKVMSGHNS---P---------CTCGEFIPDGKR-ILTGY------ 209 (399)
T ss_pred EEEeecC-------------CCcEEEEECCCcceeeEecCCCC---C---------cccccccCCCce-EEEEe------
Confidence 7776543 34799999987544444333211 1 112388999999 55433
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceEE
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLALV 313 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l~ 313 (751)
..+.|.+++.. ++.....+...++... ..++.++..+.
T Consensus 210 ------~dgti~~Wn~k--tg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 210 ------DDGTIIVWNPK--TGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred ------cCceEEEEecC--CCceeEEecccccCcCCccccccccceeE
Confidence 23578888864 3433344443332222 45566665443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-05 Score=85.71 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=85.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+...+++-+|+++++.+.+- .|-+.+.+.... +.+-. ....+.++.++|.|
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrg-------------h~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRG-------------HDAPVLQLSYDPKG 150 (933)
T ss_pred ccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeecc-------------cCCceeeeeEcCCC
Confidence 4567889999999999876542 344566654322 22211 22335588999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------e-ceeEE-EEEecCCceEEEeeeeccccee
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------L-DLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~-~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
+. ++..+ -.+.+++++++.. .....++. . ...+. ++|+|+|..+++.. ....
T Consensus 151 ~f-LAvss------------~dG~v~iw~~~~~--~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~----~d~~ 211 (933)
T KOG1274|consen 151 NF-LAVSS------------CDGKVQIWDLQDG--ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP----VDNT 211 (933)
T ss_pred CE-EEEEe------------cCceEEEEEcccc--hhhhhcccCCccccccccceeeeeeecCCCCeEEeec----cCCe
Confidence 97 55543 3468888888521 11122221 1 22344 99999977666544 1246
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
|-+++..+-. ....|-.......+.. .+|||.|++|+....+
T Consensus 212 Vkvy~r~~we-~~f~Lr~~~~ss~~~~-----~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 212 VKVYSRKGWE-LQFKLRDKLSSSKFSD-----LQWSPNGKYIAASTLD 253 (933)
T ss_pred EEEEccCCce-eheeecccccccceEE-----EEEcCCCcEEeeeccC
Confidence 6677776641 1122221111111111 7899999999988843
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0001 Score=80.03 Aligned_cols=229 Identities=9% Similarity=0.103 Sum_probs=118.6
Q ss_pred ecCCC-ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCc
Q 004475 170 DFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 170 ~lt~~-~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
.+..+ ..+..++|+|+ +..|+..+. ...+.+|++.++.. ..+.. + ...+......+.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~-------------DgtIrIWDi~t~~~~~~~i~~-p-----~~~L~gH~~~V~ 129 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSE-------------DLTIRVWEIPHNDESVKEIKD-P-----QCILKGHKKKIS 129 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeC-------------CCeEEEEECCCCCcccccccc-c-----eEEeecCCCcEE
Confidence 34444 67889999997 566655433 34688999864321 11100 0 001122234467
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
.++|+|++.. ++.+.. ..+.|.++|+.. +.....+ .....+. ++|+|||+.|+.+.. ...
T Consensus 130 sVaf~P~g~~-iLaSgS-----------~DgtIrIWDl~t--g~~~~~i-~~~~~V~SlswspdG~lLat~s~----D~~ 190 (568)
T PTZ00420 130 IIDWNPMNYY-IMCSSG-----------FDSFVNIWDIEN--EKRAFQI-NMPKKLSSLKWNIKGNLLSGTCV----GKH 190 (568)
T ss_pred EEEECCCCCe-EEEEEe-----------CCCeEEEEECCC--CcEEEEE-ecCCcEEEEEECCCCCEEEEEec----CCE
Confidence 8999999987 443321 235788888851 2222223 2344566 999999998876541 235
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC-
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT- 403 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~- 403 (751)
|.++|+.++ .....+..+. ...... ......|++|+++|+..+.+. .....|.+||+..
T Consensus 191 IrIwD~Rsg-~~i~tl~gH~-g~~~s~-~v~~~~fs~d~~~IlTtG~d~-----------------~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 191 MHIIDPRKQ-EIASSFHIHD-GGKNTK-NIWIDGLGGDDNYILSTGFSK-----------------NNMREMKLWDLKNT 250 (568)
T ss_pred EEEEECCCC-cEEEEEeccc-CCceeE-EEEeeeEcCCCCEEEEEEcCC-----------------CCccEEEEEECCCC
Confidence 677777764 1111221111 100000 000023568888877766221 1234688999874
Q ss_pred CceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecC
Q 004475 404 GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 404 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
++.......+.. ...+ .+.+.++.+.++.+... -..++++++..+....|...
T Consensus 251 ~~pl~~~~ld~~-----~~~L-----~p~~D~~tg~l~lsGkG---D~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 251 TSALVTMSIDNA-----SAPL-----IPHYDESTGLIYLIGKG---DGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred CCceEEEEecCC-----ccce-----EEeeeCCCCCEEEEEEC---CCeEEEEEccCCcEEeeccc
Confidence 433333222211 1111 12444555555555433 23477777766666666554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-06 Score=77.86 Aligned_cols=167 Identities=11% Similarity=0.160 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCc-eecC-CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC---CceeeeeccCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt-~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~~~~~~l~~~~~~~ 231 (751)
..|.++++.|+. ..+. +.-.....+.||||++|+.... +.++.+|.+- .+..+.+..
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gF-------------TpDVkVwE~~f~kdG~fqev~r----- 270 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF-------------TPDVKVWEPIFTKDGTFQEVKR----- 270 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecC-------------CCCceEEEEEeccCcchhhhhh-----
Confidence 467788887743 3332 2244567889999999998754 3455666542 222221111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC--CCCCCCceEeEee-------ce-eE
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE--PAEGEKPEILHKL-------DL-RF 301 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~~-------~~-~~ 301 (751)
.+.+......+..++||++..+ ++-++ . .+.+.++|.+ =.-++.++.|..+ .. .+
T Consensus 271 --vf~LkGH~saV~~~aFsn~S~r-~vtvS-k-----------DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~ 335 (420)
T KOG2096|consen 271 --VFSLKGHQSAVLAAAFSNSSTR-AVTVS-K-----------DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV 335 (420)
T ss_pred --hheeccchhheeeeeeCCCcce-eEEEe-c-----------CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence 0112222334557788888888 55543 1 1222232221 0012223333222 11 22
Q ss_pred EEEEecCCceEEEeeeecccceeEEEecCCCCCC--cceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 302 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV--APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 302 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++.||.|+.|+.+. .+.|..+..+++.. ....+....+.. ++|++||++++...
T Consensus 336 RL~lsP~g~~lA~s~-----gs~l~~~~se~g~~~~~~e~~h~~~Is~---------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 336 RLELSPSGDSLAVSF-----GSDLKVFASEDGKDYPELEDIHSTTISS---------ISYSSDGKYIATCG 392 (420)
T ss_pred EEEeCCCCcEEEeec-----CCceEEEEcccCccchhHHHhhcCceee---------EEecCCCcEEeeec
Confidence 278999999998765 23455555555411 112222233333 88999999998776
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-06 Score=80.08 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.||+.++.|++|..|. .+...... +..+..+++++++| +|.+.. +..+++++++.+.+.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~---~~t~~~f~l~~fdG-gHFfl~-----~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWR---EHTKGDFTLRVFDG-GHFFLN-----QQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHH---HhhcCCceEEEecC-cceehh-----hhHHHHHHHHHHHhh
Confidence 4578999999999999886 44433333 33445789999987 698863 334455555555554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-06 Score=78.37 Aligned_cols=118 Identities=10% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee----------eccCCCCccccce
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK----------PLFESPDICLNAV 88 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~----------~lt~~~~~~~~~~ 88 (751)
...+.|+.. ....+...+|-|-+....-+.= ...--||-.+....-.+ ++..++++ .-
T Consensus 130 t~pt~Lks~-sQrnvtclawRPlsaselavgC--------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh---~p 197 (445)
T KOG2139|consen 130 TCPTKLKSV-SQRNVTCLAWRPLSASELAVGC--------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH---NP 197 (445)
T ss_pred CCCceecch-hhcceeEEEeccCCcceeeeee--------cceeEEEEcCcccccccccccccccchhheeCCCC---ce
Confidence 556666632 2236788999999877433321 23345554443222122 23333332 24
Q ss_pred eeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC
Q 004475 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (751)
Q Consensus 89 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~ 167 (751)
+..++|.+||..|+-.+. ..+.|.++|+ +|+
T Consensus 198 Vtsmqwn~dgt~l~tAS~------------------------------------------------gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASF------------------------------------------------GSSSIMIWDPDTGQ 229 (445)
T ss_pred eeEEEEcCCCCEEeeccc------------------------------------------------CcceEEEEcCCCCC
Confidence 778999999988876643 2267888899 777
Q ss_pred ceecCCC--ceEEeeeeCCCCceEEEEEecC
Q 004475 168 AKDFGTP--AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 168 ~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
..+|... +++....|||||.+|+..+.+.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 7777633 8888999999999998876553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-05 Score=72.35 Aligned_cols=224 Identities=14% Similarity=0.123 Sum_probs=126.8
Q ss_pred ccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeec-cCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
...++.+| ++.-+||.++ -..-++++|..+|+..+. ...+.+- ....-+|||||++|+.+-.+-..
T Consensus 7 gH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeEEcCCCCCE---EecCEEEcCCCCEEEEeccccCC
Confidence 56789999 5666666553 236788899999986544 3333321 23466999999988766221100
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceec---CCC-ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~l---t~~-~~~~~~~~SpDG 186 (751)
..+.|-++|+....+++ ..+ -+-.++.|.|||
T Consensus 75 --------------------------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 75 --------------------------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred --------------------------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 22678888886433333 333 445688999999
Q ss_pred ceEEEEEecCCc-----ccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 187 KYVLITSMHRPY-----SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 187 ~~i~~~~~~~~~-----~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
+.|++..-.-.. ....-.......|...|..++++..-...+- ......+|.+++++||. +++..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~--------~~~~lSiRHLa~~~~G~--V~~a~ 180 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP--------DLHQLSIRHLAVDGDGT--VAFAM 180 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc--------cccccceeeEEecCCCc--EEEEE
Confidence 999885432110 0011112234667778777665432211111 11234588999999996 44432
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeE-------eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+..+... ....-|.+... ++..+.+. ...+.+. ++++++|..++.++.+ ...+.+.|..++
T Consensus 181 -Q~qg~~~---~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg 249 (305)
T PF07433_consen 181 -QYQGDPG---DAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATG 249 (305)
T ss_pred -ecCCCCC---ccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCC
Confidence 2222211 01123444443 22222222 2234455 8999999999988854 346666777775
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=78.51 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--------CceeEEEEccCCCCCCCCccCcccccccchhhH
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP--------HLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p--------~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 656 (751)
+.-+.+|+.+++..| ||+|+|+|+.|+..++.... -.|+-+|+++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455567788888777 69999999999999987221 13688888888633210
Q ss_pred HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 657 ~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...-..+...+++|.|-+.|+.|.++| ...+..+++.+..+ .+..-|+ ||.+.. ...+.+.+.+||
T Consensus 152 ----~~~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~fi 217 (230)
T KOG2551|consen 152 ----KLDESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADFI 217 (230)
T ss_pred ----hhhhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHHH
Confidence 000112244689999999999999999 89899999988765 4555554 798643 447788889999
Q ss_pred HHHhcC
Q 004475 737 QKYCLS 742 (751)
Q Consensus 737 ~~~l~~ 742 (751)
...+.+
T Consensus 218 ~~~~~~ 223 (230)
T KOG2551|consen 218 QSFLQE 223 (230)
T ss_pred HHHHHh
Confidence 877653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00014 Score=76.14 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=116.5
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--e---eceeEE-EEEecCC
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--K---LDLRFS-VSWCDDS 309 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~---~~~~~~-~~~spdg 309 (751)
.+..+...+...+.||||++ |++... .+..||.+.-+ + ..+... . ...... ..|+-|+
T Consensus 377 l~~k~~~nIs~~aiSPdg~~-Ia~st~-----------~~~~iy~L~~~---~-~vk~~~v~~~~~~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 377 LFTKEKENISCAAISPDGNL-IAISTV-----------SRTKIYRLQPD---P-NVKVINVDDVPLALLDASAISFTIDK 440 (691)
T ss_pred eecCCccceeeeccCCCCCE-EEEeec-----------cceEEEEeccC---c-ceeEEEeccchhhhccceeeEEEecC
Confidence 34555667788999999999 777431 23466766654 2 221111 1 111233 7889999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
..+++.+. ....+..+.++++ ..+.+...... .+ +..--+..||||.+|+..+
T Consensus 441 ~k~~~~s~---~~~~le~~el~~p--s~kel~~~~~~~~~---~~I~~l~~SsdG~yiaa~~------------------ 494 (691)
T KOG2048|consen 441 NKLFLVSK---NIFSLEEFELETP--SFKELKSIQSQAKC---PSISRLVVSSDGNYIAAIS------------------ 494 (691)
T ss_pred ceEEEEec---ccceeEEEEecCc--chhhhhccccccCC---CcceeEEEcCCCCEEEEEe------------------
Confidence 98877662 2346777777664 22233222111 11 1111267899999999988
Q ss_pred CCCCCceeEEEecCCCceeEEee-ccchhhhhceeeeecCCcceeecc-CCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 389 PEGNIPFLDLFDINTGSKERIWE-SNREKYFETAVALVFGQGEEDINL-NQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
....|+.|++++++.+.+.. .+. .+++ .+++| +-+.|+...+ ..++|..|++..+..++
T Consensus 495 ---t~g~I~v~nl~~~~~~~l~~rln~-----~vTa-------~~~~~~~~~~lvvats----~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 495 ---TRGQIFVYNLETLESHLLKVRLNI-----DVTA-------AAFSPFVRNRLVVATS----NNQVFEFDIEARNLTRW 555 (691)
T ss_pred ---ccceEEEEEcccceeecchhccCc-----ceee-------eeccccccCcEEEEec----CCeEEEEecchhhhhhh
Confidence 33478999999887766542 111 1222 35553 3445665542 34689999855544444
Q ss_pred ecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCC
Q 004475 467 TNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 523 (751)
Q Consensus 467 t~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~ 523 (751)
...+.. .+ ..+ +... ...+.++.+-|+ .|..+++|++.|
T Consensus 556 s~~nt~--nl---pk~---~~~l-~~~~~gisfd~~---------n~s~~~~~~a~w 594 (691)
T KOG2048|consen 556 SKNNTR--NL---PKE---PKTL-IPGIPGISFDPK---------NSSRFIVYDAHW 594 (691)
T ss_pred hhcccc--cc---ccC---hhhc-CCCCceEEeCCC---------CccEEEEEcCcE
Confidence 433320 11 111 1111 124677777764 367888888654
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.2e-06 Score=77.43 Aligned_cols=103 Identities=15% Similarity=0.033 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
+..+||-+||.| |+-+.|. .....|.+.|++++..++ +|.|....+..... .-++-...++
T Consensus 34 ~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN~---PGf~~t~~~~~~~~-~n~er~~~~~ 94 (297)
T PF06342_consen 34 PLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGINY---PGFGFTPGYPDQQY-TNEERQNFVN 94 (297)
T ss_pred CceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeCC---CCCCCCCCCccccc-ChHHHHHHHH
Confidence 366899999976 2223443 345577889999999554 45544433221110 0112223344
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.|.+.-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 95 ~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 95 ALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred HHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 444443455 78999999999999999999995 4677777765
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-06 Score=83.21 Aligned_cols=153 Identities=17% Similarity=0.067 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCCceeEEEEccCCCC-------------------C
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-------------------K 638 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d-------------------~ 638 (751)
.-.++|..++-+.|.++-.| +++. ++|.||||+.|+..+..+|+++..+|.+++... .
T Consensus 126 ~~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP 203 (368)
T COG2021 126 VITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADP 203 (368)
T ss_pred cccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCC
Confidence 34567777777777665344 4665 999999999999999999999988887776411 0
Q ss_pred CC--Cc-c-Cccccc--------------------ccchh--------------hHHHH---------------------
Q 004475 639 TL--TP-F-GFQTEF--------------------RTLWE--------------ATNVY--------------------- 659 (751)
Q Consensus 639 ~~--~~-~-~~~~~~--------------------~~~~~--------------~~~~~--------------------- 659 (751)
.. -. + +...+. ..++. ..+.|
T Consensus 204 ~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 204 DWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred CccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 00 00 0 000000 00000 11111
Q ss_pred ---HhcCccc-------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 660 ---IEMSPIT-------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 660 ---~~~~~~~-------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
..+++.. -+++++.|+|++.-+.|.+.| +.+.+++.+.|...+. -..+-...||.-... ....+.
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~--~~~i~S~~GHDaFL~-e~~~~~ 358 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA--LREIDSPYGHDAFLV-ESEAVG 358 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc--eEEecCCCCchhhhc-chhhhh
Confidence 1111222 266789999999999999999 9999999999988765 223444568875432 233455
Q ss_pred HHHHHHHHH
Q 004475 730 WETDRWLQK 738 (751)
Q Consensus 730 ~~~~~fl~~ 738 (751)
..+..||..
T Consensus 359 ~~i~~fL~~ 367 (368)
T COG2021 359 PLIRKFLAL 367 (368)
T ss_pred HHHHHHhhc
Confidence 677777753
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-07 Score=92.03 Aligned_cols=109 Identities=8% Similarity=-0.022 Sum_probs=74.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~ 587 (751)
.|++|++||.+. . ..+..|...+...|.. ..|.|++ .|..|.|.+... ........+++.+
T Consensus 41 ~ptvIlIHG~~~-----------s-~~~~~w~~~l~~al~~~~~d~nVI~---VDw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTV-----------T-GMFESWVPKLVAALYEREPSANVIV---VDWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCc-----------C-CcchhhHHHHHHHHHhccCCCEEEE---EECCCcCCCCCccccccHHHHHHHHHH
Confidence 589999999521 0 0112222223333332 3699999 445555554221 2233455677888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+++|.+...++.+++.|+||||||++|..++.+.|+++..++++.|.
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 889887654467789999999999999999999999999999998885
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=84.62 Aligned_cols=104 Identities=24% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCCCCCCCCccCcccccccchhhHHH
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNV 658 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 658 (751)
.+.+++.+.+.+ .+|+|+|+||.+|..++... ...++.+|++++.......
T Consensus 92 ~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~----------------- 150 (212)
T PF03959_consen 92 YLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD----------------- 150 (212)
T ss_dssp HHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE------------------
T ss_pred HHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-----------------
Confidence 333444444433 58999999999999988642 1247899999886431100
Q ss_pred HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 659 YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 659 ~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
+.......++++|+|-++|++|.+++ .+.++.+++.+... .+++..++ ||.+.
T Consensus 151 ---~~~~~~~~~i~iPtlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 151 ---YQELYDEPKISIPTLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp ---GTTTT--TT---EEEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred ---hhhhhccccCCCCeEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 00000234578999999999999998 88999999988764 57777776 67763
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-07 Score=91.19 Aligned_cols=127 Identities=22% Similarity=0.177 Sum_probs=84.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC-eEEEEcCCC-CCCCCCC-
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PIIGEGD- 570 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~v~~~~~~-~~~g~g~- 570 (751)
+.--+|.|+. + ..++|+|||+|||++..++... .+ .....|+++| ++|+.++|+ +..|+=.
T Consensus 80 L~LNIwaP~~--~--a~~~PVmV~IHGG~y~~Gs~s~----------~~--ydgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPEV--P--AEKLPVMVYIHGGGYIMGSGSE----------PL--YDGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccCC--C--CCCCcEEEEEeccccccCCCcc----------cc--cChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 6777888982 1 3348999999999876543321 11 1245678888 888887774 2333211
Q ss_pred -CCC--CchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 571 -KLP--NDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 571 -~~~--~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
+.. ........+.|.+.+++|++++ =.=|+++|-|+|.|+||+.++.+++.. ...|..+|+.+|..
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~ 217 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAA 217 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCC
Confidence 000 0001123578899999999875 124899999999999999998887652 23577778888764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.8e-05 Score=74.41 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=141.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe---eeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~---~~lt~~ 80 (751)
.+.+|++|.+. ++..=.. +.+ -..+..+||||+.++.+...-.....++..--|-++|+++=.+ ..|-..
T Consensus 16 ~~rv~viD~d~----~k~lGmi--~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 16 TSRVYVIDADS----GKLLGMI--DTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK 88 (342)
T ss_dssp SEEEEEEETTT----TEEEEEE--EEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred cceEEEEECCC----CcEEEEe--ecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence 35789999877 6654322 333 3567889999999987664111011112233455667665322 122110
Q ss_pred CCcccc-ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 81 PDICLN-AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 81 ~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
+ +-.. ......+.|+||+++++.... ....+
T Consensus 89 ~-R~~~~~~~~~~~ls~dgk~~~V~N~T-----------------------------------------------Pa~SV 120 (342)
T PF06433_consen 89 P-RAQVVPYKNMFALSADGKFLYVQNFT-----------------------------------------------PATSV 120 (342)
T ss_dssp --B--BS--GGGEEE-TTSSEEEEEEES-----------------------------------------------SSEEE
T ss_pred c-hheecccccceEEccCCcEEEEEccC-----------------------------------------------CCCeE
Confidence 0 0000 112366899999999887321 11578
Q ss_pred EEEcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE--EeCCCceeeeeccCCCCCCCCC
Q 004475 160 VLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 160 ~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
-++|+ .++. ..+.-++...-+-+.+++ +...+.+. .+.. .|.+|+..+..+..-..+..|.
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~~~~--F~~lC~DG-------------sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSGNRG--FSMLCGDG-------------SLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEETTE--EEEEETTS-------------CEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred EEEECCCCceeeeecCCCEEEEEecCCCc--eEEEecCC-------------ceEEEEECCCCCEeEeeccccCCCCccc
Confidence 88999 4433 233222222223333333 22222221 2333 3444554433322111111111
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------eceeEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------LDLRFS 302 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~~~~~~ 302 (751)
.....++.++.+ ++|.+ ..+.+|.+++. +..++.... .++...
T Consensus 186 --------f~~~~~~~~~~~-~~F~S------------y~G~v~~~dls---g~~~~~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 186 --------FEHPAYSRDGGR-LYFVS------------YEGNVYSADLS---GDSAKFGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp ---------S--EEETTTTE-EEEEB------------TTSEEEEEEET---TSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred --------ccccceECCCCe-EEEEe------------cCCEEEEEecc---CCcccccCcccccCccccccCcCCccee
Confidence 113356666666 67765 55789998885 333222211 122334
Q ss_pred -EEEecCCceEEEeeee------cccceeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 303 -VSWCDDSLALVNETWY------KTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
+++.+..++|+..-.. .....+||.+|+.++ ....++. ..... + ++.|.|.+-++|....
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~~~~---S------i~Vsqd~~P~L~~~~~-- 309 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEHPID---S------IAVSQDDKPLLYALSA-- 309 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEEEEES---E------EEEESSSS-EEEEEET--
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCCCccc---e------EEEccCCCcEEEEEcC--
Confidence 6777777666654321 224478999999996 1112222 12222 2 7789999977776521
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
....|.++|..+|+..+..
T Consensus 310 -----------------~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 310 -----------------GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp -----------------TTTEEEEEETTT--EEEEE
T ss_pred -----------------CCCeEEEEeCcCCcEEeeh
Confidence 2237999999999876553
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-05 Score=72.86 Aligned_cols=167 Identities=14% Similarity=0.207 Sum_probs=101.1
Q ss_pred EEEEEcCC-C---CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 158 QLVLGSLD-G---TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 158 ~l~~~~~~-G---~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
.|.+++.. + ..+.+.+. ..++.++|||.|++|+..+.+. ...+|....++.+.+...++-
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-------------t~~Iw~k~~~efecv~~lEGH 104 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-------------TVVIWKKEDGEFECVATLEGH 104 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc-------------eEEEeecCCCceeEEeeeecc
Confidence 45555553 3 33333332 6788999999999998876553 455666666655555444433
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEe
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWC 306 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~s 306 (751)
+..+..++||++|++ |+-++ ....++++.++. +.+ ...|..+...+- +.|.
T Consensus 105 ----------EnEVK~Vaws~sG~~-LATCS------------RDKSVWiWe~de--ddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 105 ----------ENEVKCVAWSASGNY-LATCS------------RDKSVWIWEIDE--DDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ----------ccceeEEEEcCCCCE-EEEee------------CCCeEEEEEecC--CCcEEEEeeeccccccccEEEEc
Confidence 234568999999998 66665 123677777641 222 223344444555 8999
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
|.-.. +|+..+++ .-.+|.-..+. +-...+..++....+|. ++|.++|..|+..+.
T Consensus 160 Pt~dl-L~S~SYDn-TIk~~~~~~dd-dW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 160 PTEDL-LFSCSYDN-TIKVYRDEDDD-DWECVQTLDGHENTVWS------LAFDNIGSRLVSCSD 215 (312)
T ss_pred CCcce-eEEeccCC-eEEEEeecCCC-CeeEEEEecCccceEEE------EEecCCCceEEEecC
Confidence 97664 45443332 24566554422 13334444444456676 889999999988883
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=103.60 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~~ 571 (751)
=+..-+|.|....... ++|++|++|||++..++... . .......++.++++||.++||- ..|+-..
T Consensus 108 CL~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~------~-----~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSF------P-----PYDGASLAASKDVIVVTINYRLGAFGFLSL 174 (535)
T ss_dssp --EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTS------G-----GGHTHHHHHHHTSEEEEE----HHHHH-BS
T ss_pred HHHHhhhhcccccccc--ccceEEEeecccccCCCccc------c-----cccccccccCCCEEEEEecccccccccccc
Confidence 3778888898754432 59999999999876543210 0 1122345578899999987752 2232111
Q ss_pred CCCch-hHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCC
Q 004475 572 LPNDR-FVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~-~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~ 635 (751)
..... .....+.|...|++|+++.- .=||++|-|+|+|.||..+..++... ...|..+|+.+|.
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 11111 13456789999999999851 13899999999999999998887753 3579999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-05 Score=75.53 Aligned_cols=281 Identities=12% Similarity=0.067 Sum_probs=144.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCC---cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD---GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~---~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
-||.|.+.+ |...+-+++-+ ...+...+|.++|+-|-= +..+.|.|++..+.+. +++.-.+
T Consensus 223 H~~Fw~~~~----~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----------DS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 223 HLYFWTLRG----GSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----------DSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred eEEEEEccC----CceEEEeeccccccceEEEEEEEcCCCCEEee-----------cCCceEEEEeCCCceEEeEeeecC
Confidence 467788877 66555443322 235778899999987644 6668899999866552 3332112
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
+++..+.-.-||+.|- ...+.+- ..++....+.-.+..+.....-|++ +....| .+-...+..|-.
T Consensus 288 -----ggv~~L~~lr~GtllS-GgKDRki---~~Wd~~y~k~r~~elPe~~G~iRtv---~e~~~d--i~vGTtrN~iL~ 353 (626)
T KOG2106|consen 288 -----GGVFSLCMLRDGTLLS-GGKDRKI---ILWDDNYRKLRETELPEQFGPIRTV---AEGKGD--ILVGTTRNFILQ 353 (626)
T ss_pred -----CceEEEEEecCccEee-cCccceE---EeccccccccccccCchhcCCeeEE---ecCCCc--EEEeeccceEEE
Confidence 2466667777886553 3222111 1111000000000000000011111 000111 111111122333
Q ss_pred EcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
-.+ +| ...-.........++-.|+..+++....+ ..+.+|+-..-+-..+...
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d------------ 408 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIED------------ 408 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecC------------
Confidence 333 22 22222222567788889988887765443 2566777211111122111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
......|.|-| . |+.-. ..+..++++.+ ......+...+..++ ++|||||..|+..+-
T Consensus 409 ---~~~~~~fhpsg-~-va~Gt------------~~G~w~V~d~e---~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~- 467 (626)
T KOG2106|consen 409 ---PAECADFHPSG-V-VAVGT------------ATGRWFVLDTE---TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH- 467 (626)
T ss_pred ---ceeEeeccCcc-e-EEEee------------ccceEEEEecc---cceeEEEEecCCceEEEEEcCCCCEEEEecC-
Confidence 13367999999 5 55533 23688999886 444444444467778 999999999998772
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+....||+++.++ ..-..+-....+.... +.||+|+++|.-.+
T Consensus 468 -d~~iyiy~Vs~~g--~~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 468 -DNHIYIYRVSANG--RKYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred -CCeEEEEEECCCC--cEEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 2233455555555 2222332222222111 77999999988877
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=69.78 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=110.0
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc-eE
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS-TL 257 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~-~i 257 (751)
.+.+|.|||++++..... ...+-++|++.++...-.+.|+... .-|-|+. +.
T Consensus 99 ~~~ls~dgk~~~V~N~TP-----------a~SVtVVDl~~~kvv~ei~~PGC~~----------------iyP~~~~~F~ 151 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTP-----------ATSVTVVDLAAKKVVGEIDTPGCWL----------------IYPSGNRGFS 151 (342)
T ss_dssp GEEE-TTSSEEEEEEESS-----------SEEEEEEETTTTEEEEEEEGTSEEE----------------EEEEETTEEE
T ss_pred ceEEccCCcEEEEEccCC-----------CCeEEEEECCCCceeeeecCCCEEE----------------EEecCCCceE
Confidence 578999999999875442 4578899999887655444444422 1122211 12
Q ss_pred EEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-----eceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-----LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
..|. .+.+..+.++ .+|+..+..+. .+..+. +.++.++.+++|.+ ....||.+++.
T Consensus 152 ~lC~-------------DGsl~~v~Ld-~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~dls 213 (342)
T PF06433_consen 152 MLCG-------------DGSLLTVTLD-ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSADLS 213 (342)
T ss_dssp EEET-------------TSCEEEEEET-STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEEEET
T ss_pred EEec-------------CCceEEEEEC-CCCCEeEeeccccCCCCcccccccceECCCCeEEEEe----cCCEEEEEecc
Confidence 2221 2344444442 11222211111 111223 67888887788855 34689999988
Q ss_pred CCCCcceeeee------cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 332 SKDVAPRVLFD------RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 332 ~~~~~~~~l~~------~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
+. .++.... .....-|--.+-..+++.+....|++.-+ .+...++...-..||.+|+++++
T Consensus 214 g~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh-----------~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 214 GD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH-----------QGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp TS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE-----------E--TT-TTS-EEEEEEEETTTTE
T ss_pred CC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec-----------CCCCCCccCCceEEEEEECCCCe
Confidence 75 2222211 11111111112222455555545544332 12223344556689999999987
Q ss_pred eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 406 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 406 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
...-+..+.. . ..+++|-|.+=++|..... -..|++.|+.+|+..+
T Consensus 281 rv~Ri~l~~~-----~-------~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 281 RVARIPLEHP-----I-------DSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEEE-----E-------SEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEE
T ss_pred EEEEEeCCCc-----c-------ceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEe
Confidence 6544443221 1 1246777888788776442 3679999999997654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-06 Score=83.15 Aligned_cols=235 Identities=14% Similarity=0.163 Sum_probs=142.7
Q ss_pred cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCc
Q 004475 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNST 99 (751)
Q Consensus 21 ~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~ 99 (751)
.+++..|..+.-+-..++|-+-++++. .+++.|.|+++...+ ..++....-..-...++.+..+|||+
T Consensus 410 arq~~tL~HGEvVcAvtIS~~trhVyT-----------gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTRHVYT-----------GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcceeEe-----------cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc
Confidence 344444556655667889988888866 566777777875532 23332222110011367889999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc----eecCCC-
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA----KDFGTP- 174 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~----~~lt~~- 174 (751)
.|+...+. +.|-+||+.... ..|+..
T Consensus 479 tLivGGea-------------------------------------------------stlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 479 TLIVGGEA-------------------------------------------------STLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred eEEecccc-------------------------------------------------ceeeeeeccCCCcchhhhcCCcc
Confidence 99887221 567777884421 234444
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
.....++.|||.|.. |.... ...|.+||+..... +++ .....+...+..|+||
T Consensus 510 paCyALa~spDakvc-Fsccs------------dGnI~vwDLhnq~~Vrqf-------------qGhtDGascIdis~dG 563 (705)
T KOG0639|consen 510 PACYALAISPDAKVC-FSCCS------------DGNIAVWDLHNQTLVRQF-------------QGHTDGASCIDISKDG 563 (705)
T ss_pred hhhhhhhcCCcccee-eeecc------------CCcEEEEEcccceeeecc-------------cCCCCCceeEEecCCC
Confidence 456688999999854 44433 24688999976543 333 2233456689999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
.+ | |+.. ..+.+..||+. +.+.+.+. .-.+. +.++|.+.||+..-. ++.+|+...
T Consensus 564 tk-l-WTGG-----------lDntvRcWDlr-----egrqlqqhdF~SQIfSLg~cP~~dWlavGMe----ns~vevlh~ 621 (705)
T KOG0639|consen 564 TK-L-WTGG-----------LDNTVRCWDLR-----EGRQLQQHDFSSQIFSLGYCPTGDWLAVGME----NSNVEVLHT 621 (705)
T ss_pred ce-e-ecCC-----------Cccceeehhhh-----hhhhhhhhhhhhhheecccCCCccceeeecc----cCcEEEEec
Confidence 87 3 3221 23577778874 22233322 23344 778999999988652 246777776
Q ss_pred CCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 331 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+. +.-+|..+..- +.+ +.|++=|+|++...++
T Consensus 622 skp--~kyqlhlheSc-VLS------lKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 622 SKP--EKYQLHLHESC-VLS------LKFAYCGKWFVSTGKD 654 (705)
T ss_pred CCc--cceeecccccE-EEE------EEecccCceeeecCch
Confidence 663 44455433211 122 7799999998877744
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-06 Score=79.99 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=125.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|.|+|++|...+. .+...|| +..+=..+.+-.... ..++.+.||++|.+++.....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLW--Ng~~fnFEtilQaHD----s~Vr~m~ws~~g~wmiSgD~g---- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLW--NGTSFNFETILQAHD----SPVRTMKWSHNGTWMISGDKG---- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEe--cCceeeHHHHhhhhc----ccceeEEEccCCCEEEEcCCC----
Confidence 5778999999999998643 4445555 422211112211111 137789999999998865211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC-ceecCC-C-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGT-P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~-~~~lt~-~-~~~~~~~~SpDG~~ 188 (751)
.-|..++.+=. ++.+.. + ..+.+++|||....
T Consensus 160 ---------------------------------------------G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 160 ---------------------------------------------GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ---------------------------------------------ceEEecccchhhhHHhhHhhhhhhheeccCCCCce
Confidence 23444444221 111211 2 56789999995544
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
++-.+.+ +.|.+||.. .++.+.|..+- ..++++.|+|.... |+..+
T Consensus 195 F~t~SdD-------------g~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgL-iasgs------ 241 (464)
T KOG0284|consen 195 FLTCSDD-------------GTIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGL-IASGS------ 241 (464)
T ss_pred eEEecCC-------------CeEEEEeccCCchhheeccCC-------------CCcceeccCCccce-eEEcc------
Confidence 4433332 367889885 44445553222 23568899999875 44432
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
..+-+-++|. .++.....+......+. +.|+|+|.+|+..+.. ..+-++|..+- .+ .........
T Consensus 242 ------kDnlVKlWDp--rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD----~~~kv~DiR~m-kE-l~~~r~Hkk 307 (464)
T KOG0284|consen 242 ------KDNLVKLWDP--RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD----QSCKVFDIRTM-KE-LFTYRGHKK 307 (464)
T ss_pred ------CCceeEeecC--CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC----ceEEEEehhHh-HH-HHHhhcchh
Confidence 1125666664 34555555555555566 8999999999876632 24445555432 11 112222223
Q ss_pred cccCCCCCCCeeeCCCCCEEEEee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++.. ..|+|=...|+...
T Consensus 308 dv~~------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 308 DVTS------LTWHPLNESLFTSG 325 (464)
T ss_pred hhee------eccccccccceeec
Confidence 3333 66888777665544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-05 Score=75.97 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=130.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||-|++|++.- ...|-++.-..+. .|+.... +.+..+.+||.+++|..-+......
T Consensus 34 p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~--~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 34 PVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKA--KLVRFRH----PDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred chhheeecCcchheehhh-----------ccceEEccccchh--heeeeec----CCceecccCcccceeeeeccCCccC
Confidence 577899999999998832 2333333322222 2211121 1367789999999997664433221
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC----CceEE-eeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----PAVYT-AVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~----~~~~~-~~~~SpD 185 (751)
. + ....|.+ ...++.++|. +|.+..--. ....+ -..||-|
T Consensus 97 p-e---~e~sp~~------------------------------~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~ 142 (561)
T COG5354 97 P-E---IEISPFT------------------------------SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID 142 (561)
T ss_pred h-h---hccCCcc------------------------------ccCceeEEeccCceeEeeccccCCcccccceeeeeec
Confidence 0 0 0000000 1137888888 664322111 11122 5779999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce--EEEEEec
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST--LYWVEAQ 263 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~--i~~~~~~ 263 (751)
.++++... ..+++++++ ++...+ ++..... ..+++.++|||.|++- .+|+- +
T Consensus 143 D~y~ARvv--------------~~sl~i~e~-t~n~~~---~p~~~lr-------~~gi~dFsisP~~n~~~la~~tP-E 196 (561)
T COG5354 143 DKYVARVV--------------GSSLYIHEI-TDNIEE---HPFKNLR-------PVGILDFSISPEGNHDELAYWTP-E 196 (561)
T ss_pred chhhhhhc--------------cCeEEEEec-CCcccc---Cchhhcc-------ccceeeEEecCCCCCceEEEEcc-c
Confidence 99887652 346888887 544432 2222111 2567899999997652 23321 1
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeec-----c--cceeEEEecCCCC
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYK-----T--SQTRTWLVCPGSK 333 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~-----~--~~~~l~~~~~~~~ 333 (751)
-.+ ....+.++.+. .+ ....+.. ...-. +.|-+.|++|++..... + +.+.||+.+....
T Consensus 197 k~~-------kpa~~~i~sIp-~~---s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 197 KLN-------KPAMVRILSIP-KN---SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred cCC-------CCcEEEEEEcc-CC---CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 111 11345555552 11 1111222 22222 89999999988766432 1 3468999888753
Q ss_pred CCcceee--eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 334 DVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 334 ~~~~~~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..+.. .....++ ++|+|+++.++..+
T Consensus 266 --~i~V~~~~~~pVhd---------f~W~p~S~~F~vi~ 293 (561)
T COG5354 266 --SIPVEKDLKDPVHD---------FTWEPLSSRFAVIS 293 (561)
T ss_pred --ccceecccccccee---------eeecccCCceeEEe
Confidence 22222 2233344 88999999888777
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-06 Score=75.09 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=104.4
Q ss_pred cCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 539 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 539 ~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
|.......+..|+++|+.|+..|...+. ......++...|+.+++++..++.. ..+++|+|.|+|+-+...+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvdsl~Yf------w~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDSLRYF------WSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEechHHHH------hhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 3344456788999999999985543222 1223456778999999999888743 5799999999999998888
Q ss_pred HHhCCC----ceeEEEEccCCCC--CCCCccCcccccccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChH
Q 004475 619 LAHAPH----LFCCGIARSGSYN--KTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 619 a~~~p~----~~~~~v~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~ 691 (751)
..+-|. +++.++++++... +.....++...... . ..+.+...+.++. .|++.+.|++|....||
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~-----~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp-- 156 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGD-----D--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCP-- 156 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCC-----c--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCc--
Confidence 877664 5778888877532 11111111100000 0 0112223344554 58999999887544322
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 692 QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 692 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.. ..++.+..||+.|. .++.....+.|++-++
T Consensus 157 -------~l~~--~~~~~i~lpGgHHf---d~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 157 -------SLRQ--PGVEVIALPGGHHF---DGDYDALAKRILDALK 190 (192)
T ss_pred -------cccC--CCcEEEEcCCCcCC---CCCHHHHHHHHHHHHh
Confidence 2333 35788999997664 3344455555555543
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-06 Score=81.89 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=146.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCC---cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee---eccC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD---GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFE 79 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~---~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~---~lt~ 79 (751)
.|+|||++.- |....+..|+. +..++.-.++|||+.|..- .....|-|+|++.-..+ +||.
T Consensus 441 cVKVWdis~p---g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG----------GeastlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 441 CVKVWDISQP---GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG----------GEASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred eEEEeeccCC---CCCCccccccccCcccceeeeEecCCCceEEec----------cccceeeeeeccCCCcchhhhcCC
Confidence 5899999882 33334444433 3467788899999999872 23466777777654332 2332
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
... ....++.|||.+ |+|.... .+.|
T Consensus 508 sap-----aCyALa~spDak-vcFsccs------------------------------------------------dGnI 533 (705)
T KOG0639|consen 508 SAP-----ACYALAISPDAK-VCFSCCS------------------------------------------------DGNI 533 (705)
T ss_pred cch-----hhhhhhcCCccc-eeeeecc------------------------------------------------CCcE
Confidence 222 234678999997 5555331 1578
Q ss_pred EEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 160 VLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 160 ~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
.++|+ +. .++++..+ .+...+..|+||..|+.-.. .+.+..||+..+ +++-.+.+.
T Consensus 534 ~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~------ 592 (705)
T KOG0639|consen 534 AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFS------ 592 (705)
T ss_pred EEEEcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhh------
Confidence 88899 55 55666655 77889999999999986433 346778998754 333333333
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
.++..+...|+|.++++-++ .+++.++... +.....+...+--+- +.|++.|+|++-+
T Consensus 593 -----SQIfSLg~cP~~dWlavGMe-------------ns~vevlh~s---kp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 593 -----SQIFSLGYCPTGDWLAVGME-------------NSNVEVLHTS---KPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred -----hhheecccCCCccceeeecc-------------cCcEEEEecC---CccceeecccccEEEEEEecccCceeeec
Confidence 23447788999999444433 2456666653 444455555554444 8999999988754
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. .+.-...|+...... .-++-+. ..+.. -..|.|.++|+..+
T Consensus 652 G--kDnlLnawrtPyGas---iFqskE~--SsVls------CDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 652 G--KDNLLNAWRTPYGAS---IFQSKES--SSVLS------CDISFDDKYIVTGS 693 (705)
T ss_pred C--chhhhhhccCccccc---eeecccc--Cccee------eeeccCceEEEecC
Confidence 4 122234565554331 1111111 11111 22578888887766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=78.77 Aligned_cols=212 Identities=17% Similarity=0.135 Sum_probs=121.7
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeec-CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.|+.++..+ ++.+.+. ++. .....+. +|| .|+++. ...+.++++++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~~---~~G~~~~~~~g-~l~v~~-----------~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LPG---PNGMAFDRPDG-RLYVAD-----------SGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SSS---EEEEEEECTTS-EEEEEE-----------TTCEEEEETTTTEEEEEEEEETTC
T ss_pred EEEEEECCC----CeEEEEe-cCC---CceEEEEccCC-EEEEEE-----------cCceEEEecCCCcEEEEeeccCCC
Confidence 577777766 6655544 222 3344555 675 444432 134455698899877776542111
Q ss_pred -ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 85 -LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 85 -~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
-....+.++..|||+ |+|+......... .....||+++
T Consensus 83 ~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~----------------------------------------~~~g~v~~~~ 121 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGN-LYVTDSGGGGASG----------------------------------------IDPGSVYRID 121 (246)
T ss_dssp SCTEEEEEEEE-TTS--EEEEEECCBCTTC----------------------------------------GGSEEEEEEE
T ss_pred cccCCCceEEEcCCCC-EEEEecCCCcccc----------------------------------------ccccceEEEC
Confidence 111356889999998 7777443221100 0015799999
Q ss_pred CCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--Cce---eeeeccCCCCCCCCCcc
Q 004475 164 LDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKL---VRELCDLPPAEDIPVCY 237 (751)
Q Consensus 164 ~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~---~~~l~~~~~~~~~~~~~ 237 (751)
.+|+.+.+... .....++|||||+.|++.... ...|+.++.+ +.. .+.+...+...
T Consensus 122 ~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------ 183 (246)
T PF08450_consen 122 PDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------ 183 (246)
T ss_dssp TTSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS------
T ss_pred CCCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC------
Confidence 98876666554 555689999999999886443 3468888885 331 12222222111
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEE-ecCCceEEEe
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSW-CDDSLALVNE 315 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~-spdg~~l~~~ 315 (751)
..+.++++..+|+ |+.+.. ..+.|++++.+ +.....+.-...... ++| .+|.+.|+.+
T Consensus 184 ----g~pDG~~vD~~G~--l~va~~-----------~~~~I~~~~p~---G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 184 ----GYPDGLAVDSDGN--LWVADW-----------GGGRIVVFDPD---GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----CEEEEEEEBTTS---EEEEEE-----------TTTEEEEEETT---SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ----cCCCcceEcCCCC--EEEEEc-----------CCCEEEEECCC---ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 1245789999997 444421 23588888875 544444433323555 788 4777877765
Q ss_pred e
Q 004475 316 T 316 (751)
Q Consensus 316 ~ 316 (751)
+
T Consensus 244 t 244 (246)
T PF08450_consen 244 T 244 (246)
T ss_dssp E
T ss_pred e
Confidence 5
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=88.23 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=61.8
Q ss_pred HHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHH
Q 004475 659 YIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRW 735 (751)
Q Consensus 659 ~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~f 735 (751)
+....+...+.++. +|+|++||..|..|| ...+..++...... +....++++++|....... ..+.+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 45555666666776 799999999999999 89999999888764 5678888999998764232 34788999999
Q ss_pred HHHHh
Q 004475 736 LQKYC 740 (751)
Q Consensus 736 l~~~l 740 (751)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-05 Score=74.60 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=97.4
Q ss_pred EEEEEcC-CCCceec---CCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccC-
Q 004475 158 QLVLGSL-DGTAKDF---GTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDL- 227 (751)
Q Consensus 158 ~l~~~~~-~G~~~~l---t~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~- 227 (751)
-|.++|. +|+.+.- -++ ....++.|||||.+|+.-- +..|.++|+. .+.-..+...
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------------krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------------KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------------cceEEEeeccCCCCCCcchhhh
Confidence 5777888 8854422 112 2345889999999997531 3457778773 3322211111
Q ss_pred C-CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEE
Q 004475 228 P-PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSW 305 (751)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 305 (751)
. +..+. ..-+..+++||-....+++-+ -..+-.||..+- .+....+....+.+. +.|
T Consensus 200 ~~~k~gq-------~giisc~a~sP~~~~~~a~gs----------Y~q~~giy~~~~----~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 200 TKGKFGQ-------KGIISCFAFSPMDSKTLAVGS----------YGQRVGIYNDDG----RRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred hcccccc-------cceeeeeeccCCCCcceeeec----------ccceeeeEecCC----CCceeeecccCCCeeeEEe
Confidence 1 01000 011357899998886455532 112234555442 223344556677788 999
Q ss_pred ecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
.+||..|+..+.. .. .|...|+... ..+..-......+.. ..-.+-..|+|++|+-..
T Consensus 259 ~edGn~lfsGaRk-~d--kIl~WDiR~~-~~pv~~L~rhv~~TN---QRI~FDld~~~~~LasG~--------------- 316 (406)
T KOG2919|consen 259 CEDGNKLFSGARK-DD--KILCWDIRYS-RDPVYALERHVGDTN---QRILFDLDPKGEILASGD--------------- 316 (406)
T ss_pred ccCcCeecccccC-CC--eEEEEeehhc-cchhhhhhhhccCcc---ceEEEecCCCCceeeccC---------------
Confidence 9999998776643 23 3444444332 111111111111000 010134568888877654
Q ss_pred CCCCCCCCceeEEEecCC-Cce
Q 004475 386 GFTPEGNIPFLDLFDINT-GSK 406 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~-g~~ 406 (751)
+...+.+||+++ |..
T Consensus 317 ------tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 317 ------TDGSVRVWDLKDLGNE 332 (406)
T ss_pred ------CCccEEEEecCCCCCc
Confidence 334788999987 553
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.7e-06 Score=81.26 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=47.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
|.++. .+.+|+|.+...........+++...++ ..+ ..++.++|||+||.++..++.++|+.++++++.++
T Consensus 51 ~~~~~---~d~~g~g~s~~~~~~~~~~~~~~~~~~~---~~~---~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 51 YRVIA---PDLRGHGRSDPAGYSLSAYADDLAALLD---ALG---LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred eEEEE---ecccCCCCCCcccccHHHHHHHHHHHHH---HhC---CCceEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 89988 4555777664000111111333333333 222 23499999999999999999999999999998886
Q ss_pred C
Q 004475 635 S 635 (751)
Q Consensus 635 ~ 635 (751)
.
T Consensus 122 ~ 122 (282)
T COG0596 122 A 122 (282)
T ss_pred C
Confidence 4
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=84.60 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=118.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+++-||+++|+- .....|-++++.++..+..+.+... .+..+.++|.|+.||..+.+
T Consensus 98 p~r~~~v~g~g~~iaag----------sdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~d---- 159 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAG----------SDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSCD---- 159 (933)
T ss_pred cceEEEEecCCcEEEee----------cCceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEecC----
Confidence 46789999999999995 3446788888877665555444332 36788999999999988543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCC------C---ceEEee
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT------P---AVYTAV 180 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~------~---~~~~~~ 180 (751)
+.|.++++ +|. ...++. . ..+..+
T Consensus 160 ---------------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~ 194 (933)
T KOG1274|consen 160 ---------------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRL 194 (933)
T ss_pred ---------------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeee
Confidence 57788888 662 222221 1 345578
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
+|+|||..+++...++ .+-+|+.++-+..-..... .....+..++|||+|++ |+..
T Consensus 195 aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~----------~~ss~~~~~~wsPnG~Y-iAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDK----------LSSSKFSDLQWSPNGKY-IAAS 250 (933)
T ss_pred eecCCCCeEEeeccCC-------------eEEEEccCCceeheeeccc----------ccccceEEEEEcCCCcE-Eeee
Confidence 9999987777765443 4667777765443211111 11122457899999999 6553
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
. ..++|-+|+.+ .-.+ ......+. .+|-|+...|-+..+
T Consensus 251 ~------------~~g~I~vWnv~---t~~~---~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 251 T------------LDGQILVWNVD---THER---HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred c------------cCCcEEEEecc---cchh---ccccceeEEEecCCCCCeeEEEee
Confidence 3 44789999986 2111 23334455 899999988877663
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.3e-06 Score=83.61 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=126.1
Q ss_pred eeEEeecCCCCCCCCc-ccccCCCCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.|.+++|+. ++.-. .-+.++-++.-++...|.| |.++||.... ++..+||.+.+.+...-..|-....
T Consensus 604 ~iai~el~~--PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 604 VIAIYELNE--PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred eEEEEEcCC--CCCCCcccccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCCcceee
Confidence 466777755 11110 1122334455678889998 7788888643 6778899888766543333221111
Q ss_pred cccc-eeeeeEEecC-CcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 CLNA-VFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~~~~-~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
..+. -+..+.|.|= ...|+..+ ....|-+
T Consensus 674 t~h~eKI~slRfHPLAadvLa~as-------------------------------------------------yd~Ti~l 704 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVAS-------------------------------------------------YDSTIEL 704 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhh-------------------------------------------------ccceeee
Confidence 0000 1234455542 12222221 1156788
Q ss_pred EcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ ++ ..-++..+ +.+.+++|||||++|+....+ ..|.+|++... .+.+...++..+.
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~-e~pv~Eg~gpvgt----- 765 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSR-EQPVYEGKGPVGT----- 765 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCC-CCccccCCCCccC-----
Confidence 888 66 33455555 889999999999999987654 36888988765 3444444433221
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCceEEEee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
.--.+.|.-||+. |+... - +.....+|-+++.+....... +.........- |.|.+|...|+.+.
T Consensus 766 ----RgARi~wacdgr~-viv~G-f-------dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 766 ----RGARILWACDGRI-VIVVG-F-------DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred ----cceeEEEEecCcE-EEEec-c-------cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 1115899999998 44322 1 111223666666542221111 11111122223 78899988654433
Q ss_pred eecccceeEEEecCCC
Q 004475 317 WYKTSQTRTWLVCPGS 332 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~ 332 (751)
. +...++.+.+--
T Consensus 833 -K--GD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 833 -K--GDRFVNMYEVIY 845 (1012)
T ss_pred -C--CCceEEEEEecC
Confidence 2 334666665543
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=83.93 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=110.5
Q ss_pred ceEEEEEEcCCCceEEEEEEcCC-CCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPP-GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~-~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..++..+.+.+|.+|...++--. +..++. .-+||++-|. .+|++.+-.. .=++.||.|+
T Consensus 213 NG~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGN---------------AGFYEvG~m~--tP~~lgYsvL 272 (517)
T KOG1553|consen 213 NGQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGN---------------AGFYEVGVMN--TPAQLGYSVL 272 (517)
T ss_pred CCeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCC---------------ccceEeeeec--ChHHhCceee
Confidence 35677788888888888777532 111111 3578877773 2333333211 1266899999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
..+. +|.+++.+- .+.....+.+..+++|..+.-....+.|+++|+|-||+-++++|..+|+ ++++|+-+.+-|.
T Consensus 273 GwNh---PGFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDl 347 (517)
T KOG1553|consen 273 GWNH---PGFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDL 347 (517)
T ss_pred ccCC---CCccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhh
Confidence 9444 444444221 2223345556677788887655677899999999999999999999986 7999988876553
Q ss_pred CCCccC-ccccc-ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCC
Q 004475 639 TLTPFG-FQTEF-RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 639 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp 687 (751)
...... ++... +..-.....+......+.+...+.|+.+|--++|.++.
T Consensus 348 lpLAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 348 LPLALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hhHHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 221110 11000 00001122333334444566778999998888887653
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-05 Score=69.34 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=71.7
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCcccccccchhhHHHHHhcCcccccCCCCCCEEE
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILI 677 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li 677 (751)
++++|+|.|+||+.|.+++.++. + .+|++.|.+.....- .+...+ .. .-..+...+.. + +..-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~~ig~~~~-y~-~~~~~h~~eL~----~-~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEGKIDRPEE-YA-DIATKCVTNFR----E-KNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHHHhCCCcc-hh-hhhHHHHHHhh----h-cCcccEEE
Confidence 46999999999999999999983 3 356667765432110 011111 11 00111111111 0 11123689
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+..+.|.+.. +.++.+.+... .+..+.+|++|.|.. .++.+..|++|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999987 77766555321 157899999999765 6678889999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=67.58 Aligned_cols=261 Identities=11% Similarity=0.105 Sum_probs=142.6
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC----CCCeeeccCCCCccccc----------eeeeeEEec
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE----TGEAKPLFESPDICLNA----------VFGSFVWVN 96 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~----~g~~~~lt~~~~~~~~~----------~~~~~~wsp 96 (751)
..++..+|||||+.+|.- .....|.|++++ ..+++++..+.....++ .++.+.|.|
T Consensus 113 ~~cR~aafs~DG~lvATG----------saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATG----------SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceeeeeeCCCCcEEEcc----------CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 357889999999999883 344778888875 12333333222211111 244667888
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-----Cceec
Q 004475 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF 171 (751)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~l 171 (751)
-.+.|+-.+.+ ..|.+.|.+. ..+.+
T Consensus 183 re~ILiS~srD-------------------------------------------------~tvKlFDfsK~saKrA~K~~ 213 (430)
T KOG0640|consen 183 RETILISGSRD-------------------------------------------------NTVKLFDFSKTSAKRAFKVF 213 (430)
T ss_pred hhheEEeccCC-------------------------------------------------CeEEEEecccHHHHHHHHHh
Confidence 77766655332 3556666644 22344
Q ss_pred CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec
Q 004475 172 GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 172 t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp 251 (751)
++...+..++|.|.|.+|++.... ..+.+||+++-+.- +...|.. .....+..+.+|+
T Consensus 214 qd~~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~Qcf-vsanPd~--------qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 214 QDTEPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQCF-VSANPDD--------QHTGAITQVRYSS 271 (430)
T ss_pred hccceeeeEeecCCCceEEEecCC-------------CceeEEeccceeEe-eecCccc--------ccccceeEEEecC
Confidence 444788899999999999986443 35778888876432 1111211 1223466889999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
.|+ +|.+.+. .+.|.++|=- .....+.+.. ....+. ..|+.+|++|+-+. ..+.+++.
T Consensus 272 t~~--lYvTaSk-----------DG~IklwDGV--S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLW 332 (430)
T KOG0640|consen 272 TGS--LYVTASK-----------DGAIKLWDGV--SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVKLW 332 (430)
T ss_pred Ccc--EEEEecc-----------CCcEEeeccc--cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceeeee
Confidence 998 5665432 2456666521 1112222221 222344 88999999887544 22344455
Q ss_pred cCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeE
Q 004475 329 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 408 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 408 (751)
.+.++ ...+...+....-... ..-.-.|.....+++|... ....|.-||.-++....
T Consensus 333 Ei~t~--R~l~~YtGAg~tgrq~-~rtqAvFNhtEdyVl~pDE--------------------as~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 333 EISTG--RMLKEYTGAGTTGRQK-HRTQAVFNHTEDYVLFPDE--------------------ASNSLCSWDARTADRVA 389 (430)
T ss_pred eecCC--ceEEEEecCCcccchh-hhhhhhhcCccceEEcccc--------------------ccCceeeccccchhhhh
Confidence 55553 1122211111000000 0000224555555555442 23368888888887777
Q ss_pred Eeeccc
Q 004475 409 IWESNR 414 (751)
Q Consensus 409 l~~~~~ 414 (751)
++....
T Consensus 390 l~slgH 395 (430)
T KOG0640|consen 390 LLSLGH 395 (430)
T ss_pred hcccCC
Confidence 776543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-06 Score=80.91 Aligned_cols=146 Identities=11% Similarity=0.133 Sum_probs=88.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..+.||++|.+++-...+ ..|-.|++.-..++.+. ....+.+|+++|||+..
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~g-------------G~iKyWqpnmnnVk~~~------------ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKG-------------GMIKYWQPNMNNVKIIQ------------AHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ccceeEEEccCCCEEEEcCCC-------------ceEEecccchhhhHHhh------------HhhhhhhheeccCCCCc
Confidence 567899999999998754222 23556766533222211 11224578999999887
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
. ++-++ ..+.|.+++.- .......|....+.+. +.|.|.-..|+..+ . .+-+-+.|+.++
T Consensus 194 k-F~t~S------------dDg~ikiWdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgs-k---DnlVKlWDprSg 254 (464)
T KOG0284|consen 194 K-FLTCS------------DDGTIKIWDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGS-K---DNLVKLWDPRSG 254 (464)
T ss_pred e-eEEec------------CCCeEEEEecc--CCchhheeccCCCCcceeccCCccceeEEcc-C---CceeEeecCCCc
Confidence 7 44443 34567777753 1234455667777777 99999876555433 2 236777788775
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
...-.|. ..-+.+.. +.|+|+|.+|+..+.+
T Consensus 255 -~cl~tlh-~HKntVl~------~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 255 -SCLATLH-GHKNTVLA------VKFNPNGNWLLTGSKD 285 (464)
T ss_pred -chhhhhh-hccceEEE------EEEcCCCCeeEEccCC
Confidence 2211221 11222222 7799999999988854
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.3e-05 Score=77.57 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=53.7
Q ss_pred cCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCcC--CccccHHHHHHHHHHHHHHH
Q 004475 668 ANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 668 ~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.+|+ +|+|.+.|++|.++| +.+++.+.+.+...+ .+.+.++.+++||.. .......+....+.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 45788 999999999999999 999998888764332 245677777889964 33344567889999999763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=74.19 Aligned_cols=207 Identities=11% Similarity=0.074 Sum_probs=110.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC-CccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN-SVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~spdG 253 (751)
..+..+.||.|...++.-+. ...|-+|.+.+++-.+ .|+ +...++..+.||.|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsq-------------DGkIKvWri~tG~ClR------------rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQ-------------DGKIKVWRIETGQCLR------------RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred cceEEEeecccHHHhhccCc-------------CCcEEEEEEecchHHH------------HhhhhhccCeeEEEEccCc
Confidence 45668899999998876433 3457788888775321 111 334567789999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
.. |+-++ ....+.+..++ .|...++......-+. ..|++||..|+..+. .+ .+-+.+..+
T Consensus 319 Sq-iLS~s------------fD~tvRiHGlK--SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs--Dg--tvkvW~~Kt 379 (508)
T KOG0275|consen 319 SQ-ILSAS------------FDQTVRIHGLK--SGKCLKEFRGHSSYVNEATFTDDGHHIISASS--DG--TVKVWHGKT 379 (508)
T ss_pred ch-hhccc------------ccceEEEeccc--cchhHHHhcCccccccceEEcCCCCeEEEecC--Cc--cEEEecCcc
Confidence 98 55533 11234444443 1333344444444445 899999999887662 22 334444444
Q ss_pred CCCcceeeeecccccccCCCCCCCeeeCCCC-CEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+ +-...+.....+.. .+. +-.-|-. ..+++.- ..+.++.++.. |+..+-++
T Consensus 380 t--eC~~Tfk~~~~d~~---vns-v~~~PKnpeh~iVCN---------------------rsntv~imn~q-GQvVrsfs 431 (508)
T KOG0275|consen 380 T--ECLSTFKPLGTDYP---VNS-VILLPKNPEHFIVCN---------------------RSNTVYIMNMQ-GQVVRSFS 431 (508)
T ss_pred h--hhhhhccCCCCccc---cee-EEEcCCCCceEEEEc---------------------CCCeEEEEecc-ceEEeeec
Confidence 3 11111111111100 000 1011111 1222222 22367888885 55444444
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
+... + -+++-.+..||.|.++++.... ..+|-....+|+.++
T Consensus 432 SGkR---E-----gGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 432 SGKR---E-----GGDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLER 473 (508)
T ss_pred cCCc---c-----CCceEEEEecCCCcEEEEEccC----cEEEEEEeecCceee
Confidence 3211 1 1122236789999999888643 458888888887665
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.001 Score=71.61 Aligned_cols=195 Identities=12% Similarity=0.024 Sum_probs=110.2
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.....++.|+.|.+.++-.. ...|-++++..|-.+.-.... ......+++++..--++
T Consensus 449 ~~~~av~vs~CGNF~~IG~S-------------~G~Id~fNmQSGi~r~sf~~~---------~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYS-------------KGTIDRFNMQSGIHRKSFGDS---------PAHKGEVTGLAVDGTNR 506 (910)
T ss_pred cceEEEEEeccCceEEEecc-------------CCeEEEEEcccCeeecccccC---------ccccCceeEEEecCCCc
Confidence 55678999999998776432 346788999877554221100 01112233444433333
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
. ++-+. ..+.|..++.+ +.. .+... ..... +.++-....++... ..-.|.++|..
T Consensus 507 ~-~vsa~------------~~Gilkfw~f~---~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~~----ddf~I~vvD~~ 564 (910)
T KOG1539|consen 507 L-LVSAG------------ADGILKFWDFK---KKV--LKKSLRLGSSITGIVYHRVSDLLAIAL----DDFSIRVVDVV 564 (910)
T ss_pred e-EEEcc------------CcceEEEEecC---Ccc--eeeeeccCCCcceeeeeehhhhhhhhc----CceeEEEEEch
Confidence 2 22222 33566677664 222 11111 11112 34444444443332 23467888887
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+. ...+.+.+..+.... ++|||||+||+.++++. .|+.||+.++...-...
T Consensus 565 t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 565 TR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------TIRTWDLPTGTLIDGLL 615 (910)
T ss_pred hh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------cEEEEeccCcceeeeEe
Confidence 73 222222222222222 88999999999999653 79999999998765555
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
.+.. ... .++||+|..|+.+...-+ .||++.
T Consensus 616 vd~~-----~~s-------ls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 616 VDSP-----CTS-------LSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred cCCc-----cee-------eEECCCCCEEEEEEecCc---eEEEEE
Confidence 4432 222 489999999998885533 467665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00082 Score=79.57 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=93.2
Q ss_pred EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC---CCCccCCccCCCceeeeecCCC
Q 004475 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED---IPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..++++|++..|+++... +..|++++..++....+... +... ........-.++.+++++|||+
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~ 752 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLK 752 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecC-CccccCCCCccccccccCccEEEEeCCCC
Confidence 468999988788876433 45688999877655443211 1000 0000011113456899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec----------------------eeEE-EEEecCCce
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------------------LRFS-VSWCDDSLA 311 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~----------------------~~~~-~~~spdg~~ 311 (751)
+ |+++.. ..+.|.+++++ ++....+.... ..-. +++++||+
T Consensus 753 ~-LYVADs-----------~n~~Irv~D~~---tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 753 E-LYIADS-----------ESSSIRALDLK---TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred E-EEEEEC-----------CCCeEEEEECC---CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 8 666542 22467777764 22211111100 0112 67889997
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeeccccc------cc-CCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEcc
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN------VY-SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 384 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 384 (751)
| |.++ ..+.+|.+++.+++ ....+....... .. .......+++++||+ |++..
T Consensus 817 L-YVAD--s~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-------------- 876 (1057)
T PLN02919 817 I-YVAD--SYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-------------- 876 (1057)
T ss_pred E-EEEE--CCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE--------------
Confidence 3 3332 23467888888774 222222111000 00 001111267889996 44433
Q ss_pred CCCCCCCCCceeEEEecCCCceeEE
Q 004475 385 RGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 385 ~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
..+..|.+||+.+++..++
T Consensus 877 ------t~Nn~Irvid~~~~~~~~~ 895 (1057)
T PLN02919 877 ------TNNSLIRYLDLNKGEAAEI 895 (1057)
T ss_pred ------CCCCEEEEEECCCCcccee
Confidence 2345889999988765333
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.6e-05 Score=77.61 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=41.1
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHH-------HHHHHhCCCcEEEEEeCCCCCc
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERF-------FDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
+++|++|+++++|..|.+.| ++++... .+.++..|..+.+.+.+..||-
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 56889999999999999999 8988433 3556778888899999999996
|
Their function is unknown. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-05 Score=70.46 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=125.2
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC-------CC-eeec
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-------GE-AKPL 77 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-------g~-~~~l 77 (751)
.+.+||+.+ |+....- .-+..+...-||++|.+++++.. .. -.+...|.+.++.. .+ ...+
T Consensus 75 t~kLWDv~t----Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD----~~-mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 75 TAKLWDVET----GKQLATW--KTNSPVKRVDFSFGGNLILASTD----KQ-MGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred eeEEEEcCC----CcEEEEe--ecCCeeEEEeeccCCcEEEEEeh----hh-cCcceEEEEEEccCChhhhcccCceEEe
Confidence 578999999 9888664 33345788999999999999763 11 13446666666652 22 2222
Q ss_pred cCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
..... -+....|+|-|+.|+..-++ +
T Consensus 144 ~t~~s-----kit~a~Wg~l~~~ii~Ghe~-------------------------------------------------G 169 (327)
T KOG0643|consen 144 PTPDS-----KITSALWGPLGETIIAGHED-------------------------------------------------G 169 (327)
T ss_pred cCCcc-----ceeeeeecccCCEEEEecCC-------------------------------------------------C
Confidence 21111 24577999999999987322 4
Q ss_pred EEEEEcC-CC-Cceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee--ccCCCCC
Q 004475 158 QLVLGSL-DG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL--CDLPPAE 231 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~ 231 (751)
.|-.+|+ +| +...- ..+ ..+.++.+|||..+++..+.+. .-.+||..+-+...- +..|
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~P--- 233 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERP--- 233 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeeccc---
Confidence 6777888 66 33222 223 5678999999999987765543 234666665433221 1112
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcc----cceeeccCCCCCCCCceEeEeeceeEE-EEEe
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR----DIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC 306 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s 306 (751)
+...+++|--.+ ++....++.-+..-..... .+.|-+-.+ ++.-.+..+-+.+. ++++
T Consensus 234 ------------vN~aaisP~~d~-VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e----EEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 234 ------------VNTAAISPLLDH-VILGGGQEAMDVTTTSTRAGKFEARFYHLIFE----EEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred ------------ccceecccccce-EEecCCceeeeeeeecccccchhhhHHHHHHH----HHhccccccccCcceeEEC
Confidence 225688898887 5553222111000000000 011111110 12223344556677 9999
Q ss_pred cCCceEEEeeeecccceeEEEec
Q 004475 307 DDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
|||+. |++..+.+.-+|+..+
T Consensus 297 PdGks--YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKS--YSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcc--cccCCCCceEEEEEec
Confidence 99995 3443333334454443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00061 Score=68.17 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=78.8
Q ss_pred eEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 234 (751)
..|+.++. +|+.+.+..+..+.....--++..|+.... .+++++.+.+.. +.+.... .....
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~---------------g~~~~~~~~~~~~t~~~~~~-~~~~~ 110 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH---------------GVRLLDPDTGGKITLLAEPE-DGLPL 110 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc---------------ccEEEeccCCceeEEecccc-CCCCc
Confidence 58899998 677666665555554444444445555422 255666654444 3332221 11111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l 312 (751)
.........|||+ +++................+.||+++.. +...+.+ .....+. ++|||||+.+
T Consensus 111 -------~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~-~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 111 -------NRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLL-DDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred -------CCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC---CCEEEee-cCcEEecCceEECCCCCEE
Confidence 1123568889987 6775433100000011223589999863 4333333 3323333 9999999988
Q ss_pred EEeeeecccceeEEEecCC
Q 004475 313 VNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~ 331 (751)
+++- +...+||+++.+
T Consensus 178 y~aD---T~~~~i~r~~~d 193 (307)
T COG3386 178 YVAD---TPANRIHRYDLD 193 (307)
T ss_pred EEEe---CCCCeEEEEecC
Confidence 8765 334688888776
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=78.09 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=106.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH---hCCeEEEEcCCCCCCCCCCCCCC-----chhHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAGPSIPIIGEGDKLPN-----DRFVEQLVS 583 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~v~~~~~~~~~g~g~~~~~-----~~~~~~~~~ 583 (751)
.++++++.|.| +..+++..+...+. ...|.|++ .+..|+...... ....-.+.+
T Consensus 2 ~~li~~IPGNP---------------Glv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNP---------------GLVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCC---------------ChHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 47899999864 12222223334444 35888988 555565443222 111123334
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCC-CCCCccCcccc------c-
Q 004475 584 SAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN-KTLTPFGFQTE------F- 649 (751)
Q Consensus 584 d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d-~~~~~~~~~~~------~- 649 (751)
.+...++++.+. ......+++++|||.|+++++.++.+.+ ..+..++++.|... ....+.+..-. .
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~ 143 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPP 143 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccH
Confidence 444555555443 2113578999999999999999999998 67888888888633 11111110000 0
Q ss_pred ----------------------------ccc----------hhh-----------HHHHHhcCccc---ccCCC---CCC
Q 004475 650 ----------------------------RTL----------WEA-----------TNVYIEMSPIT---HANKI---KKP 674 (751)
Q Consensus 650 ----------------------------~~~----------~~~-----------~~~~~~~~~~~---~~~~~---~~P 674 (751)
..+ ... .+.+....... .++.. ...
T Consensus 144 ~~~~~~~~~~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~k 223 (266)
T PF10230_consen 144 LVWLASFLSFLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDK 223 (266)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCE
Confidence 000 000 00111111100 11111 568
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
+.+..|..|..|| .....++.+.+.....++.+.. ++..|.|
T Consensus 224 l~f~fg~~D~Wvp--~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 224 LWFYFGQNDHWVP--NETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred EEEEEeCCCCCCC--HHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 9999999999998 8888888888775545666666 7888876
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00026 Score=74.93 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=119.1
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 114 (751)
..+||++|+.|+.+ .+..|-++++++++.. +.+....+.. .+..++.+||++.|+.....
T Consensus 24 ~~~~s~nG~~L~t~-----------~~d~Vi~idv~t~~~~-l~s~~~ed~d-~ita~~l~~d~~~L~~a~rs------- 83 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTA-----------CGDRVIIIDVATGSIA-LPSGSNEDED-EITALALTPDEEVLVTASRS------- 83 (775)
T ss_pred ceeECCCCCEEEEe-----------cCceEEEEEccCCcee-cccCCccchh-hhheeeecCCccEEEEeecc-------
Confidence 38999999999884 4467888999998864 4333322211 35688999999988877321
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceec-CC-C-ceEEeeeeCCCCceEE
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GT-P-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l-t~-~-~~~~~~~~SpDG~~i~ 190 (751)
..|-++.+ +|+..+. .- + ..+..++|+|.|..++
T Consensus 84 ------------------------------------------~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA 121 (775)
T KOG0319|consen 84 ------------------------------------------QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA 121 (775)
T ss_pred ------------------------------------------ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE
Confidence 35566666 6643322 21 3 6677889999995444
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
.... ...+-+||...+... .+-.+++ -+..+.|.|+-++.+++...
T Consensus 122 tgga-------------D~~v~VWdi~~~~~th~fkG~gG-------------vVssl~F~~~~~~~lL~sg~------- 168 (775)
T KOG0319|consen 122 TGGA-------------DGRVKVWDIKNGYCTHSFKGHGG-------------VVSSLLFHPHWNRWLLASGA------- 168 (775)
T ss_pred eccc-------------cceEEEEEeeCCEEEEEecCCCc-------------eEEEEEeCCccchhheeecC-------
Confidence 3322 345779999876543 2212222 24577899998874444321
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.++++++..... ....+..+.-.+. +.+++|+..+++.. +...+++.++..
T Consensus 169 ----~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~----RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 169 ----TDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVG----RDKVIIVWDLVQ 223 (775)
T ss_pred ----CCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEec----cCcEEEEeehhh
Confidence 235788888752111 1222233344455 89999999887765 234566677644
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00018 Score=68.65 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=104.8
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|+-..+++++.+. -|.+||.-+++.+.-...--.. ........+.|||||.+ |+.-
T Consensus 121 P~t~l~a~ssr~~-------------PIh~wdaftG~lraSy~~ydh~-------de~taAhsL~Fs~DGeq-lfaG--- 176 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQ-------------PIHLWDAFTGKLRASYRAYDHQ-------DEYTAAHSLQFSPDGEQ-LFAG--- 176 (406)
T ss_pred CccceeeeccccC-------------ceeeeeccccccccchhhhhhH-------HhhhhheeEEecCCCCe-Eeec---
Confidence 6666776665543 3889999888776432221100 00122347899999998 4441
Q ss_pred cCCCCccccCcccceeeccCCCCCCCC---ceEeEe----eceeEE-EEEecCCc-eEEEeeeecccceeEEEecCCCCC
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHK----LDLRFS-VSWCDDSL-ALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~----~~~~~~-~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
....|.++++. .+|.. ...++. ..+-++ +++||-.. .++..+ ..+++=++.-++
T Consensus 177 ----------ykrcirvFdt~-RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs----Y~q~~giy~~~~-- 239 (406)
T KOG2919|consen 177 ----------YKRCIRVFDTS-RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS----YGQRVGIYNDDG-- 239 (406)
T ss_pred ----------ccceEEEeecc-CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec----ccceeeeEecCC--
Confidence 22466666662 22221 112222 234455 88998755 566544 122333333334
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
..+-.+..+....+.. +.|.+||..|+..+. ....|-.||+-. ....|+....
T Consensus 240 ~~pl~llggh~gGvTh------L~~~edGn~lfsGaR--------------------k~dkIl~WDiR~-~~~pv~~L~r 292 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTH------LQWCEDGNKLFSGAR--------------------KDDKILCWDIRY-SRDPVYALER 292 (406)
T ss_pred CCceeeecccCCCeee------EEeccCcCeeccccc--------------------CCCeEEEEeehh-ccchhhhhhh
Confidence 2334443333333222 889999998877662 223677888742 2233443322
Q ss_pred hhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC-Cc
Q 004475 415 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL-KK 462 (751)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~-g~ 462 (751)
. +.. ....-.+...|+|+.|+-- .+-+.+.++|+.+ |.
T Consensus 293 h-----v~~-TNQRI~FDld~~~~~LasG----~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 293 H-----VGD-TNQRILFDLDPKGEILASG----DTDGSVRVWDLKDLGN 331 (406)
T ss_pred h-----ccC-ccceEEEecCCCCceeecc----CCCccEEEEecCCCCC
Confidence 1 100 0001113567788766522 2356688888776 55
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00026 Score=69.46 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=49.0
Q ss_pred CCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
+..+.+.+.... .....|++||||+.+||+.. .++...||+.... ++.+.+.... .+..|.|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~-------~~~~~~L~~~~~~-~~~~~~~~g~------~l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSE-------GDGGRSLYVGPAG-GPVRPVLTGG------SLTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEE-------cCCCCEEEEEcCC-CcceeeccCC------ccccccccC
Confidence 666666654332 25789999999999999862 1566899999864 4444443222 267889999
Q ss_pred CCcEEEEe
Q 004475 97 NSTLLIFT 104 (751)
Q Consensus 97 Dg~~l~~~ 104 (751)
+|...++.
T Consensus 76 ~g~~W~v~ 83 (253)
T PF10647_consen 76 DGWVWTVD 83 (253)
T ss_pred CCCEEEEE
Confidence 97655544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00059 Score=66.67 Aligned_cols=248 Identities=15% Similarity=0.108 Sum_probs=131.7
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
++++|..+ |+..+....+.+. -..+..|||||++|+.+.+ +. ..+.+-|=|+|+. ...+++-..++..+
T Consensus 30 ~~v~D~~~----g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn----d~-~~g~G~IgVyd~~-~~~~ri~E~~s~GI 99 (305)
T PF07433_consen 30 ALVFDCRT----GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN----DY-ETGRGVIGVYDAA-RGYRRIGEFPSHGI 99 (305)
T ss_pred EEEEEcCC----CceeeEEcCCCCCEEecCEEEcCCCCEEEEecc----cc-CCCcEEEEEEECc-CCcEEEeEecCCCc
Confidence 56778877 8888755445544 4568999999999877653 11 2566888899987 45566644444322
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
. -..+.|.|||+.|+...- +....|+. + +.+.| .......|..+|.
T Consensus 100 G--PHel~l~pDG~tLvVANG-GI~Thpd~-----G-R~kLN------------------------l~tM~psL~~ld~~ 146 (305)
T PF07433_consen 100 G--PHELLLMPDGETLVVANG-GIETHPDS-----G-RAKLN------------------------LDTMQPSLVYLDAR 146 (305)
T ss_pred C--hhhEEEcCCCCEEEEEcC-CCccCccc-----C-ceecC------------------------hhhcCCceEEEecC
Confidence 2 247899999999887621 11110000 0 00000 0113357888877
Q ss_pred CCCc---eecCC--C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 165 DGTA---KDFGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 165 ~G~~---~~lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+. ..|.. + ..+.=+++++||.-+ +........ .....-+.+++..+. .+.+ ..+... ..
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~-~a~Q~qg~~-----~~~~PLva~~~~g~~-~~~~-~~p~~~-----~~ 213 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDGTVA-FAMQYQGDP-----GDAPPLVALHRRGGA-LRLL-PAPEEQ-----WR 213 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCCcEE-EEEecCCCC-----CccCCeEEEEcCCCc-ceec-cCChHH-----HH
Confidence 8842 33432 2 567889999999754 433322111 111223444443332 2222 211100 01
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcc-cceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR-DIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~ 317 (751)
.-..++.++++++||.. |+.++ .| +.+.+++.+ .+...........+.++-.+++ ++.++
T Consensus 214 ~l~~Y~gSIa~~~~g~~-ia~ts------------PrGg~~~~~d~~---tg~~~~~~~l~D~cGva~~~~~--f~~ss- 274 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRL-IAVTS------------PRGGRVAVWDAA---TGRLLGSVPLPDACGVAPTDDG--FLVSS- 274 (305)
T ss_pred hhCCceEEEEEeCCCCE-EEEEC------------CCCCEEEEEECC---CCCEeeccccCceeeeeecCCc--eEEeC-
Confidence 11245668999999998 66654 23 467777764 3333332222322225555555 33333
Q ss_pred ecccceeEEEecCCC
Q 004475 318 YKTSQTRTWLVCPGS 332 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~ 332 (751)
+...++......
T Consensus 275 ---G~G~~~~~~~~~ 286 (305)
T PF07433_consen 275 ---GQGQLIRLSPDG 286 (305)
T ss_pred ---CCccEEEccCcc
Confidence 234566665544
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.001 Score=74.63 Aligned_cols=282 Identities=12% Similarity=0.069 Sum_probs=141.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
|...+|+.+... .+.+ ..+..+..+.|||||+.++|.+.. .....++|+++.. | .++....
T Consensus 41 ~~~~~~~~d~~~------~~~~---~~~~~~~~~~~spdg~~~~~~~~~------~~~~~~l~l~~~~-g---~~~~~~~ 101 (620)
T COG1506 41 YKSSLWVSDGKT------VRLL---TFGGGVSELRWSPDGSVLAFVSTD------GGRVAQLYLVDVG-G---LITKTAF 101 (620)
T ss_pred cccceEEEeccc------cccc---ccCCcccccccCCCCCEEEEEecc------CCCcceEEEEecC-C---ceeeeec
Confidence 445667654422 2233 344568999999999999998731 1336899999987 4 2221111
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCC-CCCCCceeeccccccccchhhhhccCCccchhhhhh--heeeEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTM-VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY--YTTAQL 159 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 159 (751)
.+....|+|+|+.+++.............. ...... .++.. ....++
T Consensus 102 -----~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~g~~~~~l 151 (620)
T COG1506 102 -----GVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLP-------------------------VWFDGRGGERSDL 151 (620)
T ss_pred -----ccccceeCCCCCeEEEEecccccccCCceeeeecccc-------------------------eeecCCCCcccce
Confidence 256779999999999953322111100000 000000 00000 023688
Q ss_pred EEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 160 VLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 160 ~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
|+++..+....+... ..+..+++.+|++.++....... ...+....+++...++.+..++..+..
T Consensus 152 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (620)
T COG1506 152 YVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDD------ADPWVTNLYVLIEGNGELESLTPGEGS-------- 217 (620)
T ss_pred EEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccc------cCCceEeeEEEecCCCceEEEcCCCce--------
Confidence 999985544444444 66778888888888877665432 011122333333344445555443332
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeec--eeEE-EEEecCCceEEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLD--LRFS-VSWCDDSLALVN 314 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~--~~~~-~~~spdg~~l~~ 314 (751)
...+.|.+||+. +++......... .....+++++.+ ...... +...+ .... ..+.-++..++|
T Consensus 218 -----~~~~~~~~~gk~-~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (620)
T COG1506 218 -----ISKLAFDADGKS-IALLGTESDRGL----AEGDFILLLDGE---LGEVDGDLSSGDDTRGAWAVEGGLDGDGLLF 284 (620)
T ss_pred -----eeeeeeCCCCCe-eEEeccCCccCc----cccceEEEEecc---ccccceeeccCCcccCcHHhccccCCCcEEE
Confidence 346799999998 555443322111 112344444411 111111 11111 1111 333456666666
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
.+....+...++.+...++ . ..+...+...+ ..|+.+|+.+++...
T Consensus 285 ~~~~~~g~~~l~~~~~~~~-~--~~~~~~~~~~v--------~~f~~~~~~~~~~~s 330 (620)
T COG1506 285 IATDGGGSSPLFRVDDLGG-G--VEGLSGDDGGV--------PGFDVDGRKLALAYS 330 (620)
T ss_pred EEecCCCceEEEEEeccCC-c--eeeecCCCceE--------EEEeeCCCEEEEEec
Confidence 6654334445555554332 1 22222221111 446678888888773
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00047 Score=69.51 Aligned_cols=264 Identities=10% Similarity=0.086 Sum_probs=155.2
Q ss_pred cccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.+.+.+|||-.-+ +|.++ .-..+|| +..+-+.+. +..... .+.+..|-.||+.++..-.
T Consensus 28 ~vssl~fsp~~P~d~aVt~---------S~rvqly--~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~--- 88 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTS---------SVRVQLY--SSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDE--- 88 (487)
T ss_pred cceeEecCCCCCCceEEec---------ccEEEEE--ecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCC---
Confidence 6788999995443 45543 2335555 444544333 433333 3567788899998876511
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC--CceecCCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG 186 (751)
++.+-++|.+. -.+.+..+ ..+....|+|++
T Consensus 89 ----------------------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 89 ----------------------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred ----------------------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 14666677633 33444444 677889999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
..++....+. ..+-.||++++..+ + .+.....++|+.+|+|-..+ |+++.
T Consensus 123 ~t~l~s~sDd------------~v~k~~d~s~a~v~-~-----------~l~~htDYVR~g~~~~~~~h-ivvtG----- 172 (487)
T KOG0310|consen 123 NTMLVSGSDD------------KVVKYWDLSTAYVQ-A-----------ELSGHTDYVRCGDISPANDH-IVVTG----- 172 (487)
T ss_pred CeEEEecCCC------------ceEEEEEcCCcEEE-E-----------EecCCcceeEeeccccCCCe-EEEec-----
Confidence 9888876552 34567888887652 1 12233467889999999998 77643
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec--
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-- 343 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-- 343 (751)
...+.+.++|+... + ....-......+. +-+-|.|..|+.+. ...+-++|+.++ . +.++..
T Consensus 173 ------sYDg~vrl~DtR~~-~-~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G-~--qll~~~~~ 236 (487)
T KOG0310|consen 173 ------SYDGKVRLWDTRSL-T-SRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTG-G--QLLTSMFN 236 (487)
T ss_pred ------CCCceEEEEEeccC-C-ceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCC-c--eehhhhhc
Confidence 13457777777411 1 1111123333455 77889999887644 245666677654 2 222211
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
....+.. +.+..|++.|+..+.+. ++.++|..+-+..-=|.-.+. +
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD~---------------------~VKVfd~t~~Kvv~s~~~~~p-----v-- 282 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLDR---------------------HVKVFDTTNYKVVHSWKYPGP-----V-- 282 (487)
T ss_pred ccceEEE------EEeecCCceEeeccccc---------------------ceEEEEccceEEEEeeecccc-----e--
Confidence 1111222 66788999998888553 777888643332211221111 1
Q ss_pred eecCCcceeeccCCCEEEEEEe
Q 004475 424 LVFGQGEEDINLNQLKILTSKE 445 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~ 445 (751)
=.+++|||++.++.-.+
T Consensus 283 -----Lsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 283 -----LSIAVSPDDQTVVIGMS 299 (487)
T ss_pred -----eeEEecCCCceEEEecc
Confidence 12688999998887643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-05 Score=78.49 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCc-------eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccC
Q 004475 157 AQLVLGSLDGTA-------KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDL 227 (751)
Q Consensus 157 ~~l~~~~~~G~~-------~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~ 227 (751)
-.||.+...|-. ..||-+ .-+..+.|.|=---++.++. .+..|.+||+.+...+ .|
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------------yd~Ti~lWDl~~~~~~~~l--- 716 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------------YDSTIELWDLANAKLYSRL--- 716 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------------ccceeeeeehhhhhhhhee---
Confidence 467777775511 233434 55667788774432222211 2456889999865433 33
Q ss_pred CCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE----E-
Q 004475 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF----S- 302 (751)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~- 302 (751)
.....++.+++|||||+. ++-.- ..+.|+++.-. +..+.+.++.+.. .
T Consensus 717 ----------~gHtdqIf~~AWSpdGr~-~AtVc------------KDg~~rVy~Pr----s~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 717 ----------VGHTDQIFGIAWSPDGRR-IATVC------------KDGTLRVYEPR----SREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred ----------ccCcCceeEEEECCCCcc-eeeee------------cCceEEEeCCC----CCCCccccCCCCccCccee
Confidence 233345779999999999 44322 23577777642 2333444443322 2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.|.-||++|+...-......+|-++++++- ....|..... ...+..-.+.+.+|...|+...
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l--~~~pl~t~~l---Dvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTL--DLRPLYTQVL---DVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhc--cCCcceeeee---cccCccccccccCCCceEEEec
Confidence 7899999998876644444566777776653 2122221111 1111222255788887665555
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00079 Score=66.40 Aligned_cols=59 Identities=12% Similarity=0.267 Sum_probs=43.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.++.+.+|+||+.++.+.+.++ .+++||+..+...... ..+..++..++|.|-++
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dn-------------s~~l~Dv~~G~l~~~~------------~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDN-------------SVRLWDVHAGQLLAIL------------DDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred cchhhhhccCCCceeeeeeccc-------------eEEEEEeccceeEeec------------cccccccceeecchhhh
Confidence 6778899999999999887654 5789999877655331 22334455789999988
Q ss_pred ceEEE
Q 004475 255 STLYW 259 (751)
Q Consensus 255 ~~i~~ 259 (751)
+ |+-
T Consensus 179 y-v~s 182 (434)
T KOG1009|consen 179 Y-VAS 182 (434)
T ss_pred h-hhh
Confidence 7 444
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00034 Score=67.88 Aligned_cols=246 Identities=13% Similarity=0.091 Sum_probs=144.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...-+.|+=-.++. . .....|+++|..+|+..+-..+... ++..++++..|+.|+-.+.+
T Consensus 110 ~vt~v~~hp~~~~v~~-a---------s~d~tikv~D~~tg~~e~~LrGHt~----sv~di~~~a~Gk~l~tcSsD---- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVS-A---------SEDATIKVFDTETGELERSLRGHTD----SVFDISFDASGKYLATCSSD---- 171 (406)
T ss_pred ceeeeeeccCceEEEE-e---------cCCceEEEEEccchhhhhhhhcccc----ceeEEEEecCccEEEecCCc----
Confidence 4666778887544433 2 3447899999999986443333322 36788999999988877443
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
-++.++|.++ ..+.+..+ ..+..+.|-|-|.
T Consensus 172 ---------------------------------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 172 ---------------------------------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred ---------------------------------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 1234445533 33333344 6788999999998
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+-.+.++ .+..|+.+++-.... |....+-++-+..+-||.- ++-.+
T Consensus 207 ~ilS~srD~-------------tik~We~~tg~cv~t------------~~~h~ewvr~v~v~~DGti-~As~s------ 254 (406)
T KOG0295|consen 207 HILSCSRDN-------------TIKAWECDTGYCVKT------------FPGHSEWVRMVRVNQDGTI-IASCS------ 254 (406)
T ss_pred eeeeccccc-------------ceeEEecccceeEEe------------ccCchHhEEEEEecCCeeE-EEecC------
Confidence 887665443 477899988753321 1222234556777777753 33322
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE--EEeee---------ecccceeEEEecCCCCCC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL--VNETW---------YKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l--~~~~~---------~~~~~~~l~~~~~~~~~~ 335 (751)
....|.++.++. .....++...+..+. .+|.|...+= -.... ..+....|-+.|..++
T Consensus 255 ------~dqtl~vW~~~t--~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 255 ------NDQTLRVWVVAT--KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred ------CCceEEEEEecc--chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 223555555531 222344555566666 7777764421 11110 0123345666666664
Q ss_pred cceeeeec--ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 336 APRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 336 ~~~~l~~~--~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
..|... ..+++.. ++|+|-|++|+..+.+ ..|.+||+++++.-..+.
T Consensus 325 --~cL~tL~ghdnwVr~------~af~p~Gkyi~ScaDD---------------------ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 325 --MCLFTLVGHDNWVRG------VAFSPGGKYILSCADD---------------------KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred --eEEEEEecccceeee------eEEcCCCeEEEEEecC---------------------CcEEEEEeccceeeeccC
Confidence 344333 2333444 8899999999888843 379999999876644443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=60.47 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=96.1
Q ss_pred EEEEEcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.+.+||+ +| +...+..+..+....|+++|.++++..... ......+.++|+.........+.|.-
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--------mg~~~~v~~fdi~~~~~~~~s~ep~~----- 141 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ--------MGYTCFVSVFDIRDDSSDIDSEEPYL----- 141 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh--------cCcceEEEEEEccCChhhhcccCceE-----
Confidence 5666777 77 444554456788999999999999986553 11245677777763322221111100
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeeceeEE-EEEecCCceEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~-~~~spdg~~l~ 313 (751)
.+......+...-|+|-|+. |+... ..+.|..+|+. ++..... .......+. ..+|+|..+++
T Consensus 142 kI~t~~skit~a~Wg~l~~~-ii~Gh------------e~G~is~~da~--~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGET-IIAGH------------EDGSISIYDAR--TGKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred EecCCccceeeeeecccCCE-EEEec------------CCCcEEEEEcc--cCceeeechhhhccccccccccCCcceEE
Confidence 01111123446799999998 55532 23567777764 1211111 112333566 89999999887
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++. .....| +|..+-....+..++.+.+. .+.+|--..++...
T Consensus 207 T~s~--Dttakl--~D~~tl~v~Kty~te~PvN~---------aaisP~~d~VilgG 250 (327)
T KOG0643|consen 207 TGSK--DTTAKL--VDVRTLEVLKTYTTERPVNT---------AAISPLLDHVILGG 250 (327)
T ss_pred eccc--Ccccee--eeccceeeEEEeeecccccc---------eecccccceEEecC
Confidence 7662 222334 45544212233345555444 56788777776655
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0044 Score=72.06 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-EEEecCCceEEEeeeecc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
+.-.++|..||.+ ++..+...... .+..+.+++.+ |. ..-..+ .++--. ++|.|.|..|+.... ..
T Consensus 211 ~~~~ISWRGDG~y-FAVss~~~~~~------~~R~iRVy~Re---G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~ 278 (928)
T PF04762_consen 211 GRVRISWRGDGEY-FAVSSVEPETG------SRRVIRVYSRE---GE-LQSTSEPVDGLEGALSWRPSGNLIASSQR-LP 278 (928)
T ss_pred CceEEEECCCCcE-EEEEEEEcCCC------ceeEEEEECCC---ce-EEeccccCCCccCCccCCCCCCEEEEEEE-cC
Confidence 4457999999998 55544211111 24577778775 32 211112 222233 899999999887764 33
Q ss_pred cceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
....|.....+|-.-..-.|.. .....+.. +.|++|+..|+...
T Consensus 279 ~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 279 DRHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred CCcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 3355656665553100011111 11111111 88999999999877
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00049 Score=74.16 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=41.7
Q ss_pred CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCce
Q 004475 167 TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (751)
Q Consensus 167 ~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (751)
-...+.....+..++|.|-..+.+++. .....+.+|++...++..-++.. .-+.+
T Consensus 402 CL~~F~HndfVTcVaFnPvDDryFiSG------------SLD~KvRiWsI~d~~Vv~W~Dl~-------------~lITA 456 (712)
T KOG0283|consen 402 CLKVFSHNDFVTCVAFNPVDDRYFISG------------SLDGKVRLWSISDKKVVDWNDLR-------------DLITA 456 (712)
T ss_pred eeeEEecCCeeEEEEecccCCCcEeec------------ccccceEEeecCcCeeEeehhhh-------------hhhee
Confidence 334444337788999999444443432 22456889998776655433322 23568
Q ss_pred eeeecCCCceEE
Q 004475 247 ISWRADKPSTLY 258 (751)
Q Consensus 247 ~~~spdG~~~i~ 258 (751)
++++|||++.|+
T Consensus 457 vcy~PdGk~avI 468 (712)
T KOG0283|consen 457 VCYSPDGKGAVI 468 (712)
T ss_pred EEeccCCceEEE
Confidence 899999998433
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=62.00 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 570 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~ 570 (751)
|.++.+..|.|++ + ++++|+++||.+ .....+..++..|+++||.|++ .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 4578899999986 2 478999999953 2333445678899999999999 77889998
Q ss_pred CCCCc---hhHHHHHHHHHHHH
Q 004475 571 KLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 571 ~~~~~---~~~~~~~~d~~~~v 589 (751)
+.... ...++.++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 86532 23466677776665
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0023 Score=61.07 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=120.7
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~ 232 (751)
+.|.++|+ +- -.+.++.+ ..+.+++||+||+.|+.++.+. .+-+||+-.+.. .++ -
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-------------si~lwDl~~gs~l~ri---r---- 104 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-------------SIKLWDLLKGSPLKRI---R---- 104 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-------------eeEEEeccCCCceeEE---E----
Confidence 46777777 33 44555556 7888999999999998876543 577899865542 221 0
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-----EEEe
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-----VSWC 306 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-----~~~s 306 (751)
|. .-+....|.|-.+...+.+-. +..-+++++. ....+.|.. .++... ..|.
T Consensus 105 ----f~---spv~~~q~hp~k~n~~va~~~------------~~sp~vi~~s---~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 105 ----FD---SPVWGAQWHPRKRNKCVATIM------------EESPVVIDFS---DPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred ----cc---CccceeeeccccCCeEEEEEe------------cCCcEEEEec---CCceeeccCCCcccccccccccccc
Confidence 00 012355788877662333221 1122333332 112222221 122221 3478
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
+-|++|+.+. ....|.+++.++- +.+.-..... +..-. +-++..|+.|++...+
T Consensus 163 r~g~yIitGt----sKGkllv~~a~t~--e~vas~rits~~~IK~------I~~s~~g~~liiNtsD------------- 217 (405)
T KOG1273|consen 163 RRGKYIITGT----SKGKLLVYDAETL--ECVASFRITSVQAIKQ------IIVSRKGRFLIINTSD------------- 217 (405)
T ss_pred CCCCEEEEec----CcceEEEEecchh--eeeeeeeechheeeeE------EEEeccCcEEEEecCC-------------
Confidence 8899888755 2356777888773 2211111111 11111 6688899988887733
Q ss_pred CCCCCCCCceeEEEecCC----CceeEEeeccchhhhhce--eeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 386 GFTPEGNIPFLDLFDINT----GSKERIWESNREKYFETA--VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~----g~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
+.|+.++.+. |+-..+... .+ ..+-+ ..+ ..+-||-||.+++... ...-.||++.-.
T Consensus 218 --------RvIR~ye~~di~~~~r~~e~e~~-~K-~qDvVNk~~W----k~ccfs~dgeYv~a~s---~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 218 --------RVIRTYEISDIDDEGRDGEVEPE-HK-LQDVVNKLQW----KKCCFSGDGEYVCAGS---ARAHALYIWEKS 280 (405)
T ss_pred --------ceEEEEehhhhcccCccCCcChh-HH-HHHHHhhhhh----hheeecCCccEEEecc---ccceeEEEEecC
Confidence 2556666541 111111100 00 00000 011 1267888887665443 223469999888
Q ss_pred CCceeEeecCCC
Q 004475 460 LKKSSQITNFPH 471 (751)
Q Consensus 460 ~g~~~~lt~~~~ 471 (751)
.|...++.+-+.
T Consensus 281 ~GsLVKILhG~k 292 (405)
T KOG1273|consen 281 IGSLVKILHGTK 292 (405)
T ss_pred CcceeeeecCCc
Confidence 888888776553
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=71.40 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCccCc-----cc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTPFGF-----QT 647 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~~~~~-----~~ 647 (751)
.......+..++.+|+++..+ .++-++||||||..++.++..+.. .+..+|++++.++-....... ..
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 455678889999999998765 589999999999999999987522 478889888887743221100 00
Q ss_pred ccccchhhHHHHHhcCcc--cccCCCCCCEEEEEcC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 004475 648 EFRTLWEATNVYIEMSPI--THANKIKKPILIIHGE------VDDKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 717 (751)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~--~~~~~~~~P~li~~G~------~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 717 (751)
..+ +-.....|...-.. .+++ -.+.+|-|.|. .|..|| ...++.+...++......+-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~~~~~p-~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNRRKNFP-KNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTHGGGST-TT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHHHhhCC-CCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 22222333332222 1121 24679999998 799999 8998888888877767777788866 578
Q ss_pred cCCccccHHHHHHHHHHHH
Q 004475 718 VYAARENVMHVIWETDRWL 736 (751)
Q Consensus 718 ~~~~~~~~~~~~~~~~~fl 736 (751)
.-. .+..++.+.+.+||
T Consensus 236 S~L--heN~~V~~~I~~FL 252 (255)
T PF06028_consen 236 SQL--HENPQVDKLIIQFL 252 (255)
T ss_dssp CGG--GCCHHHHHHHHHHH
T ss_pred ccC--CCCHHHHHHHHHHh
Confidence 754 23446777888887
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.2e-05 Score=85.95 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC-----------------
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----------------- 574 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~----------------- 574 (751)
.|+||++||-+ +... ....++..|+++||.|++ ++.+|||.+...
T Consensus 449 ~P~VVllHG~~-----------g~~~----~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGIT-----------GAKE----NALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCC-----------CCHH----HHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 68999999942 1111 112456677889999999 555666665211
Q ss_pred --------chhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 575 --------DRFVEQLVSSAEAAVEEVV------RR----GVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 575 --------~~~~~~~~~d~~~~v~~l~------~~----~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
..-..+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 0124667788888888776 21 125668999999999999999998764
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00015 Score=75.30 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=83.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCC
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKP 674 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 674 (751)
+......|+|+|+|||+.++.++...+-+ .+.++|++.=.++-..-+-+... ..+..++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgirD------------------E~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIRD------------------EALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCcc------------------hhhHhcCCc
Confidence 44556789999999999988888776533 47778877655442221111111 123457899
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc--------cHHHHHHHHHHHHHHHh
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE--------NVMHVIWETDRWLQKYC 740 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--------~~~~~~~~~~~fl~~~l 740 (751)
+|++.|..|..++ +...+++.+++++ .++++++.+++|.+--.. .+..+-..+.+|+.+.+
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA---~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~efv 375 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQA---EVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFV 375 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhc---cceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999988 8888888888765 468999999999874322 23344445555555443
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=71.78 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=82.1
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~ 558 (751)
..+++.+.. |+..|.+..+.=+.+. +..-||++-|.|....+ ..+..........++ ..|..|+
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~-----~~RWiL~s~GNg~~~E~---------~~~~~~~~~~~~~~ak~~~aNvl 175 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAK-----PQRWILVSNGNGECYEN---------RAMLDYKDDWIQRFAKELGANVL 175 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCC-----CCcEEEEEcCChHHhhh---------hhhhccccHHHHHHHHHcCCcEE
Confidence 567777775 7888888776522221 24578888885421100 000000112233344 5799999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
. +.++|.|.+.+... ..+++.|..+.++||+++. .+.+++|++.|||.||.++..++.++
T Consensus 176 ~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 176 V---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred E---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 9 55567776655554 4899999999999999753 47889999999999999998766554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0031 Score=74.79 Aligned_cols=229 Identities=9% Similarity=0.044 Sum_probs=118.3
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC--C---CCCCCCccCCccCCCceeeeec
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP--P---AEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~~~~~sp 251 (751)
...++++++|..|+++... +..|.++|..++..+.+.... + ..+... ....-.....++++|
T Consensus 626 P~GIavd~~gn~LYVaDt~------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~-~~~~ln~P~gVa~dp 692 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTE------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKG-TSQVLNSPWDVCFEP 692 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCC------------CceEEEEecCCCEEEEEeccCcccCCCCCChhh-hHhhcCCCeEEEEec
Confidence 4578899999888876432 345778888877766653211 0 000000 000011245789999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---------------eceeEE-EEEecCCceEEEe
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------------LDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---------------~~~~~~-~~~spdg~~l~~~ 315 (751)
++.. ++++.. ...+|++++.. ++....+.. .-.... ++++|||+.|+++
T Consensus 693 ~~g~-LyVad~-----------~~~~I~v~d~~---~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 693 VNEK-VYIAMA-----------GQHQIWEYNIS---DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred CCCe-EEEEEC-----------CCCeEEEEECC---CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE
Confidence 7666 565431 22356666553 111111110 001122 7899999988765
Q ss_pred eeecccceeEEEecCCCCCCcceeeeeccc---cccc-----------CCCCCC-CeeeCCCCCEEEEeeeecCCcceEE
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVF---ENVY-----------SDPGSP-MMTRTSTGTNVIAKIKKENDEQIYI 380 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~~-----------~~~~~~-~~~~spDG~~l~~~~~~~~~~~~~~ 380 (751)
. .....|.+++++++ ....+..... .... .....| .+++++||+ |++..
T Consensus 758 D---s~n~~Irv~D~~tg--~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVAD---------- 821 (1057)
T PLN02919 758 D---SESSSIRALDLKTG--GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVAD---------- 821 (1057)
T ss_pred E---CCCCeEEEEECCCC--cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEE----------
Confidence 4 23457888888764 2222211100 0000 000111 256778886 33333
Q ss_pred EEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhh--ceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 381 LLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE--TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 381 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
..+..|.+||.+++....+.......+.+ ........+..+++++||+ ++++. + ....|.++|+
T Consensus 822 ----------s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irvid~ 887 (1057)
T PLN02919 822 ----------SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRYLDL 887 (1057)
T ss_pred ----------CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEEEEC
Confidence 23458999999888776554321100000 0111122345579999997 44443 2 2346899999
Q ss_pred CCCce
Q 004475 459 PLKKS 463 (751)
Q Consensus 459 ~~g~~ 463 (751)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=72.37 Aligned_cols=166 Identities=14% Similarity=0.211 Sum_probs=100.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||.-|+.+. ..+.|-++.-.|--...+..... .+..++|.|+++.|+|...
T Consensus 106 A~~~gRW~~dGtgLlt~G----------EDG~iKiWSrsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g----- 165 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAG----------EDGVIKIWSRSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQG----- 165 (737)
T ss_pred hhhhcccCCCCceeeeec----------CCceEEEEeccchHHHHHhhcCc-----eeEEEEECCCCCceEEecC-----
Confidence 467789999999998863 23556666643322222222233 3678899999999999832
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CCCceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
.++++-.+ .-++-+...+ +.+....|+|....
T Consensus 166 ---------------------------------------------~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 166 ---------------------------------------------GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred ---------------------------------------------CeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 47777776 3355555555 67789999999987
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+-... ....-+||..|..+-. . ..++.-+.+++|.||..+ +++.-
T Consensus 201 I~sgGE-------------D~kfKvWD~~G~~Lf~---S----------~~~ey~ITSva~npd~~~-~v~S~------- 246 (737)
T KOG1524|consen 201 IASGGE-------------DFRFKIWDAQGANLFT---S----------AAEEYAITSVAFNPEKDY-LLWSY------- 246 (737)
T ss_pred eeecCC-------------ceeEEeecccCccccc---C----------Chhccceeeeeeccccce-eeeee-------
Confidence 764321 2344578876653211 1 111223568999999433 33311
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
+.+. ++ ....+.+. .+||+||..++..+
T Consensus 247 -------nt~R---~~----------~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 247 -------NTAR---FS----------SPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -------eeee---ec----------CCCccceEEEEEcCCCceeeccc
Confidence 1111 11 11234455 89999999988765
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00051 Score=65.08 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=94.6
Q ss_pred eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCcee
Q 004475 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (751)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (751)
+.|-++ ..+..+.|.|-..-|+-.+.+ ..+-++|......++-. ..-.+...+|.+
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD-------------~tvKlFDfsK~saKrA~----------K~~qd~~~vrsi 222 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRD-------------NTVKLFDFSKTSAKRAF----------KVFQDTEPVRSI 222 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCC-------------CeEEEEecccHHHHHHH----------HHhhccceeeeE
Confidence 344555 677889999998766654433 34567776533222110 001122347899
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCC-CceEeEeeceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
+|+|.|.++++-+. ...+.++|++...-- ...+-.+..+.+. +.+|+.|+..+..+ . . ..|
T Consensus 223 SfHPsGefllvgTd-------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-k-D--G~I 285 (430)
T KOG0640|consen 223 SFHPSGEFLLVGTD-------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-K-D--GAI 285 (430)
T ss_pred eecCCCceEEEecC-------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-c-C--CcE
Confidence 99999998444432 235666666411000 0011123345566 89999998544333 2 2 244
Q ss_pred EEecCCCCCCcceeeee----cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 326 WLVCPGSKDVAPRVLFD----RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 326 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
-+.|--+. +-+.. +....+.+ ..|+.+||+|+...++. .+++|.+
T Consensus 286 klwDGVS~----rCv~t~~~AH~gsevcS------a~Ftkn~kyiLsSG~DS---------------------~vkLWEi 334 (430)
T KOG0640|consen 286 KLWDGVSN----RCVRTIGNAHGGSEVCS------AVFTKNGKYILSSGKDS---------------------TVKLWEI 334 (430)
T ss_pred EeeccccH----HHHHHHHhhcCCceeee------EEEccCCeEEeecCCcc---------------------eeeeeee
Confidence 44454332 22211 11122222 55899999887766442 6888999
Q ss_pred CCCceeEEeecc
Q 004475 402 NTGSKERIWESN 413 (751)
Q Consensus 402 ~~g~~~~l~~~~ 413 (751)
.+|.........
T Consensus 335 ~t~R~l~~YtGA 346 (430)
T KOG0640|consen 335 STGRMLKEYTGA 346 (430)
T ss_pred cCCceEEEEecC
Confidence 988876555443
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0078 Score=64.29 Aligned_cols=267 Identities=15% Similarity=0.102 Sum_probs=142.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+.|||++.+||... ..++..-.|.+.++++|+...-.-.. ....++|.+|++.++|+..+....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D-----~~G~e~y~lr~kdL~tg~~~~d~i~~------~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVD-----VLGDEQYTLRFKDLATGEELPDEITN------TSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEe-----cccccEEEEEEEecccccccchhhcc------cccceEEecCCCeEEEEEEcCCCC
Confidence 4567899999999999874 22356688999999998754432111 135679999999999997653321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecCCC---ceEEeeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP---AVYTAVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt~~---~~~~~~~~SpD 185 (751)
. ..||.-.+.+ +-+.+-+. .-...+.=|..
T Consensus 199 p--------------------------------------------~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s 234 (682)
T COG1770 199 P--------------------------------------------DKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRS 234 (682)
T ss_pred c--------------------------------------------ceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccC
Confidence 1 4677766633 33333222 34456777778
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
.++|++...+.. .+++++.+.+.. ..+.+...+-. -++....-|.+ .++.+..
T Consensus 235 ~~yi~i~~~~~~----------tsE~~ll~a~~p~~~p~vv~pr~~g--------------~eY~~eh~~d~-f~i~sN~ 289 (682)
T COG1770 235 EAYIVISLGSHI----------TSEVRLLDADDPEAEPKVVLPRENG--------------VEYSVEHGGDR-FYILSNA 289 (682)
T ss_pred CceEEEEcCCCc----------ceeEEEEecCCCCCceEEEEEcCCC--------------cEEeeeecCcE-EEEEecC
Confidence 888888754321 467788877643 23333222100 01122223444 3332211
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
++ . .-.|+...+ ..+.+..+.+........ -.++--.++|+..... ..-.+|++.+..++ ++ ..+.-
T Consensus 290 ~g--k------nf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~-~glp~v~v~~~~~~-~~-~~i~f 357 (682)
T COG1770 290 DG--K------NFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQ-EGLPRVVVRDRKTG-EE-RGIAF 357 (682)
T ss_pred CC--c------ceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecc-cCCceEEEEecCCC-ce-eeEEe
Confidence 11 1 125555555 222334444444433333 4555556777665532 34457888887664 22 22321
Q ss_pred cccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 343 RVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 343 ~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
.... ..+. .++ --+|-..|.+.... -.+...++-+|+.+++.+.|-..
T Consensus 358 ~~~ay~~~l-~~~----~e~~s~~lR~~ysS-----------------~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 358 DDEAYSAGL-SGN----PEFDSDRLRYSYSS-----------------MTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred cchhhhccc-cCC----CCCCCccEEEEeec-----------------ccccceeEEeeccCCcEEEEEec
Confidence 1111 1110 011 11233344443311 12455899999999988777554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0013 Score=69.92 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=113.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.++...+|.|...++- ..+..|-+++.++.+ .|.++.+- +-...|-|.++.|+.....
T Consensus 375 dVRsl~vS~d~~~~~S-----------ga~~SikiWn~~t~kciRTi~~~y-------~l~~~Fvpgd~~Iv~G~k~--- 433 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLAS-----------GAGESIKIWNRDTLKCIRTITCGY-------ILASKFVPGDRYIVLGTKN--- 433 (888)
T ss_pred heeEEEeecCceeeee-----------cCCCcEEEEEccCcceeEEecccc-------EEEEEecCCCceEEEeccC---
Confidence 5788889988766655 445777788887765 56664431 3455788999988877432
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
+.|-++|+ ++ -...+..+ +.++.++.+||++
T Consensus 434 ----------------------------------------------Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 434 ----------------------------------------------GELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred ----------------------------------------------CceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 46666777 45 23333334 7889999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.++..+.+.... .. .. -++.+..+.+.+.|.-..-.. -.-...+.++++||||++ ++..- .
T Consensus 468 g~vT~saDktVk----fW--df-~l~~~~~gt~~k~lsl~~~rt------Lel~ddvL~v~~Spdgk~-LaVsL-L---- 528 (888)
T KOG0306|consen 468 GFVTGSADKTVK----FW--DF-KLVVSVPGTQKKVLSLKHTRT------LELEDDVLCVSVSPDGKL-LAVSL-L---- 528 (888)
T ss_pred ceEEecCCcEEE----EE--eE-EEEeccCcccceeeeeccceE------EeccccEEEEEEcCCCcE-EEEEe-c----
Confidence 998876554210 00 00 011221122222221111000 001134568999999998 44422 1
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
+..-.+|-+|.= .-.-.|..+.-.+. ...|||++.|+..+.. .+-.+|=.|.
T Consensus 529 -----dnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSAD--KnVKiWGLdF 581 (888)
T KOG0306|consen 529 -----DNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSAD--KNVKIWGLDF 581 (888)
T ss_pred -----cCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCC--CceEEecccc
Confidence 122245554421 11122333444445 7889999999877632 2345665554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0036 Score=64.11 Aligned_cols=63 Identities=8% Similarity=0.088 Sum_probs=37.6
Q ss_pred ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 298 DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.+.+. +.|||||++|+..+. .+..+| .+.++. +..-+...-+....- ++||||||+|+....+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSq--DGfLRv--F~fdt~--eLlg~mkSYFGGLLC------vcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQ--DGFLRI--FDFDTQ--ELLGVMKSYFGGLLC------VCWSPDGKYIVTGGED 353 (636)
T ss_pred cccccceeEcCCCceEEEEec--CceEEE--eeccHH--HHHHHHHhhccceEE------EEEcCCccEEEecCCc
Confidence 44556 899999999998873 233344 455442 222222211111111 7899999999987743
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.3e-05 Score=74.64 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=62.4
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...++++|..|+.++.+ .+.. ......+.+-+.+.+..+++.+++... .++|-++|+|.||.+++.++++.+.
T Consensus 130 s~V~~l~~~g~~vfvIsw~-nPd~--~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWR-NPDA--SLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEecc-CchH--hhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 3466788999999884442 2222 112223333344788888888887643 3679999999999999999999887
Q ss_pred c-eeEEEEccCCCC
Q 004475 625 L-FCCGIARSGSYN 637 (751)
Q Consensus 625 ~-~~~~v~~~~~~d 637 (751)
+ ++.++.+....|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 7 888888887665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0011 Score=70.61 Aligned_cols=249 Identities=13% Similarity=0.078 Sum_probs=143.6
Q ss_pred eeEEeecCCCCCCCCc-ccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.|.+|+.++ ++. |.++ .+ .+....|=|-+++|+.- ...+.|-++++.+......+.-..
T Consensus 395 SikiWn~~t----~kciRTi~---~~-y~l~~~Fvpgd~~Iv~G----------~k~Gel~vfdlaS~~l~Eti~AHd-- 454 (888)
T KOG0306|consen 395 SIKIWNRDT----LKCIRTIT---CG-YILASKFVPGDRYIVLG----------TKNGELQVFDLASASLVETIRAHD-- 454 (888)
T ss_pred cEEEEEccC----cceeEEec---cc-cEEEEEecCCCceEEEe----------ccCCceEEEEeehhhhhhhhhccc--
Confidence 577888876 443 3343 44 35666788888888763 234566677777765333322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+.+-.++-+||++..+..+.+....+ | ...+..+.
T Consensus 455 --gaIWsi~~~pD~~g~vT~saDktVkf--------------------------------------W-----df~l~~~~ 489 (888)
T KOG0306|consen 455 --GAIWSISLSPDNKGFVTGSADKTVKF--------------------------------------W-----DFKLVVSV 489 (888)
T ss_pred --cceeeeeecCCCCceEEecCCcEEEE--------------------------------------E-----eEEEEecc
Confidence 12456677899998887754321110 0 01111122
Q ss_pred CCCc---------eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCC
Q 004475 165 DGTA---------KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (751)
Q Consensus 165 ~G~~---------~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 234 (751)
.|.. +.|.-...+..+++||||++|++.-.++ .+-+|-+++-+. ..|+.+.+.
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHkLP---- 552 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHKLP---- 552 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeecccccc----
Confidence 2311 1121126778999999999999976554 334444444322 233333322
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
+.++..|||++. |+-.++ ...+-+|.++ + |...+-+..++..+. +.|-|+.. +.
T Consensus 553 ---------V~smDIS~DSkl-ivTgSA------------DKnVKiWGLd-F-GDCHKS~fAHdDSvm~V~F~P~~~-~F 607 (888)
T KOG0306|consen 553 ---------VLSMDISPDSKL-IVTGSA------------DKNVKIWGLD-F-GDCHKSFFAHDDSVMSVQFLPKTH-LF 607 (888)
T ss_pred ---------eeEEeccCCcCe-EEeccC------------CCceEEeccc-c-chhhhhhhcccCceeEEEEcccce-eE
Confidence 558899999996 555431 1244444442 2 345666777777777 89999444 55
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
|++.. ...+-..|.+. .+..+..+.....+|- ++.+|+|.+++..+++
T Consensus 608 Ft~gK---D~kvKqWDg~k--Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 608 FTCGK---DGKVKQWDGEK--FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSHD 655 (888)
T ss_pred EEecC---cceEEeechhh--hhhheeeccchheeee------eEEcCCCCeEEeccCC
Confidence 66633 34566666655 4444545555555665 8899999998888754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.003 Score=64.59 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcee-cC-CCceEEeeeeCCCCceEEEEEec
Q 004475 157 AQLVLGSLDGTAKD-FG-TPAVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 157 ~~l~~~~~~G~~~~-lt-~~~~~~~~~~SpDG~~i~~~~~~ 195 (751)
+.|.++.-+|-.+. +. ....+..++|.|+...|+|....
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 46777777884332 22 23678899999999999997543
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00098 Score=58.67 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=79.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEc
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHG 680 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G 680 (751)
+.++|++||.|+..++.++.+....++++++.+|..-..... .........+.. ..++.-|.+++++
T Consensus 59 ~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~------------~~~~~~tf~~~p-~~~lpfps~vvaS 125 (181)
T COG3545 59 GPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI------------RPKHLMTFDPIP-REPLPFPSVVVAS 125 (181)
T ss_pred CCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc------------chhhccccCCCc-cccCCCceeEEEe
Confidence 459999999999999999988766899999999863211100 011111122222 2234568999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC--ccccHHHHHHHHHHHHHH
Q 004475 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA--ARENVMHVIWETDRWLQK 738 (751)
Q Consensus 681 ~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~~ 738 (751)
.+|+.++ +++++.+.+++.+. ++....+||... ....+.+....+.+|+.+
T Consensus 126 rnDp~~~--~~~a~~~a~~wgs~-----lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 126 RNDPYVS--YEHAEDLANAWGSA-----LVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCCCCC--HHHHHHHHHhccHh-----heecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 9999999 99999999888654 778888888642 223444555555555543
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=67.51 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=104.6
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC-CCCCCC------CccC-ccccc-
Q 004475 583 SSAEAAVEEVV----RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-SYNKTL------TPFG-FQTEF- 649 (751)
Q Consensus 583 ~d~~~~v~~l~----~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~-~~d~~~------~~~~-~~~~~- 649 (751)
.-+.++++.+. +...++.++.+|.|.|-=|..++..|+.. +|++|++.+.- +.+... ..++ .....
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 34444444443 33456788999999999999999999955 78888876552 222110 0011 00000
Q ss_pred ccc-------h----hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 650 RTL-------W----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 650 ~~~-------~----~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
... + ...+...-.+|+.+.++++.|-||+.|..|.... ++...-++..|+. +..++++|+++|.
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~ 303 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHS 303 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcc
Confidence 000 0 1112334567888889999999999999999998 8999999998874 4589999999998
Q ss_pred CCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
... .+....+..|+...+.+.+
T Consensus 304 ~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 304 LIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred cch----HHHHHHHHHHHHHHHcCCC
Confidence 754 5777889999988766443
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=69.50 Aligned_cols=225 Identities=16% Similarity=0.125 Sum_probs=131.2
Q ss_pred cceeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC-C-eeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-~-~~~lt~~ 80 (751)
...|+++|..+ |+.. .|.+..+ .+...+++.-|++||-.+. +.. +.+++.++- + .+.+ .+
T Consensus 129 d~tikv~D~~t----g~~e~~LrGHt~--sv~di~~~a~Gk~l~tcSs--------Dl~--~~LWd~~~~~~c~ks~-~g 191 (406)
T KOG0295|consen 129 DATIKVFDTET----GELERSLRGHTD--SVFDISFDASGKYLATCSS--------DLS--AKLWDFDTFFRCIKSL-IG 191 (406)
T ss_pred CceEEEEEccc----hhhhhhhhcccc--ceeEEEEecCccEEEecCC--------ccc--hhheeHHHHHHHHHHh-cC
Confidence 35799999998 8763 2433333 4889999999999999753 222 444454442 1 2222 22
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
..+ .++.+.+-|-|.+|+-.+.+ ..|.
T Consensus 192 h~h----~vS~V~f~P~gd~ilS~srD-------------------------------------------------~tik 218 (406)
T KOG0295|consen 192 HEH----GVSSVFFLPLGDHILSCSRD-------------------------------------------------NTIK 218 (406)
T ss_pred ccc----ceeeEEEEecCCeeeecccc-------------------------------------------------ccee
Confidence 222 47888999999888866432 3566
Q ss_pred EEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCc
Q 004475 161 LGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVC 236 (751)
Q Consensus 161 ~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~ 236 (751)
.++. +| ....++.+ ..+..++.+.||..++--+. .+.|.+|-..+++.+.+ ..++..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-------------dqtl~vW~~~t~~~k~~lR~hEh~------ 279 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-------------DQTLRVWVVATKQCKAELREHEHP------ 279 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-------------CceEEEEEeccchhhhhhhccccc------
Confidence 6777 67 67777777 88999999999987765433 34677888877643322 122211
Q ss_pred cCCccCCCceeeeecCCCceEEEEEecc--CCCC-ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQD--RGDA-NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
+-.++|.|+..+ =-...+.+ .+.. .........|.++++. ++...-+|...+.-+. .+|+|-|++|
T Consensus 280 -------vEci~wap~~~~-~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 280 -------VECIAWAPESSY-PSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred -------eEEEEecccccC-cchhhccCCCCCccEEEeecccceEEEEecc--CCeEEEEEecccceeeeeEEcCCCeEE
Confidence 124555555332 00000000 0000 0111223467777774 2334444555555566 9999999999
Q ss_pred EEeeeecccceeEEEec
Q 004475 313 VNETWYKTSQTRTWLVC 329 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~ 329 (751)
+-.++. ...++|-+.
T Consensus 350 ~ScaDD--ktlrvwdl~ 364 (406)
T KOG0295|consen 350 LSCADD--KTLRVWDLK 364 (406)
T ss_pred EEEecC--CcEEEEEec
Confidence 877732 334555443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0067 Score=64.32 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=39.3
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
..++..+|||||+++|.-. ..-.+.+.+++++.-. ++.....+.. .+..++|||.+++|+-.
T Consensus 79 k~~t~vAfS~~GryvatGE--------cG~~pa~kVw~la~h~--vVAEfvdHKY--~vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 79 KPLTCVAFSQNGRYVATGE--------CGRTPASKVWSLAFHG--VVAEFVDHKY--NVTCVAFSPGNKYVVSV 140 (1080)
T ss_pred cceeEEEEcCCCcEEEecc--------cCCCccceeeeecccc--chhhhhhccc--cceeeeecCCCcEEEee
Confidence 3688999999999999831 1233455566665432 2222222221 36788999999999844
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=70.65 Aligned_cols=244 Identities=12% Similarity=0.111 Sum_probs=129.7
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCc-ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
...|.+|++.+ ++...+..|.+. ..+....+-+|++.+.-. .+..++.+++++..+. .+|+-+.
T Consensus 196 Dr~Ik~W~v~~----~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa----------s~d~~~r~Wnvd~~r~~~TLsGHt 261 (459)
T KOG0288|consen 196 DRIIKLWNVLG----EKSELISTLAGSLGNITSIDFDSDNKHVIAA----------SNDKNLRLWNVDSLRLRHTLSGHT 261 (459)
T ss_pred hhhhhhhhccc----chhhhhhhhhccCCCcceeeecCCCceEEee----------cCCCceeeeeccchhhhhhhcccc
Confidence 34688999988 776566555442 368899999999987664 3445666666666654 3443322
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. . +..+.+.-....++-.+.+ ..|..
T Consensus 262 d-k----Vt~ak~~~~~~~vVsgs~D-------------------------------------------------RtiK~ 287 (459)
T KOG0288|consen 262 D-K----VTAAKFKLSHSRVVSGSAD-------------------------------------------------RTIKL 287 (459)
T ss_pred c-c----eeeehhhccccceeecccc-------------------------------------------------chhhh
Confidence 1 1 3344444333333322111 34555
Q ss_pred EcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+|+ .+ ..+.+.......++..+ ...+++ .. |...|..||..+....+-.+..+
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~S-gH-----------~DkkvRfwD~Rs~~~~~sv~~gg---------- 342 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCS---ISDVIS-GH-----------FDKKVRFWDIRSADKTRSVPLGG---------- 342 (459)
T ss_pred hhhhhhheeccccccccccceEec---ceeeee-cc-----------cccceEEEeccCCceeeEeecCc----------
Confidence 566 33 22222211222233333 222222 21 24458889977665443322222
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeec----eeEE-EEEecCCceEE
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLD----LRFS-VSWCDDSLALV 313 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~----~~~~-~~~spdg~~l~ 313 (751)
-+..+..++||..++.+ + . .+.|-++|+- +... ....... -... +.||||+.+++
T Consensus 343 ---~vtSl~ls~~g~~lLss-s-R-----------Ddtl~viDlR---t~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 343 ---RVTSLDLSMDGLELLSS-S-R-----------DDTLKVIDLR---TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred ---ceeeEeeccCCeEEeee-c-C-----------CCceeeeecc---cccEEEEeeccccccccccceeEECCCCceee
Confidence 14478999999984444 2 1 2355556553 2222 2222211 1234 88999999988
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccc-cccCCCCCCCeeeCCCCCEEEEee
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.++. ...||+.+..++.-+ ..+-....+ .... .+|+|-|+.|+..+
T Consensus 404 AGS~----dgsv~iW~v~tgKlE-~~l~~s~s~~aI~s------~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 404 AGSA----DGSVYIWSVFTGKLE-KVLSLSTSNAAITS------LSWNPSGSGLLSAD 450 (459)
T ss_pred eccC----CCcEEEEEccCceEE-EEeccCCCCcceEE------EEEcCCCchhhccc
Confidence 7652 346788888775222 222211111 1222 78999999988776
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0011 Score=73.47 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred eEEEEEeecccccccCCceeEEEEEcCCCCeeec-cCCCCccccceeeeeEEecCCcEEEE-eecCCCCCCCCCCCCCCC
Q 004475 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF-TIPSSRRDPPKKTMVPLG 121 (751)
Q Consensus 44 ~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~~~~~~~~ 121 (751)
+|||+.. ...+|.++|.++..++.+ +.... .+..|.|||||+.|+| ++.....
T Consensus 320 kiAfv~~---------~~~~L~~~D~dG~n~~~ve~~~~~-----~i~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 320 KLAFRND---------VTGNLAYIDYTKGASRAVEIEDTI-----SVYHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eEEEEEc---------CCCeEEEEecCCCCceEEEecCCC-----ceecCcCCCCCCEEEEEEeecCCC-----------
Confidence 8999862 224999999999999888 65554 2567799999999999 5433210
Q ss_pred CceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CC-CceecCCC-ceEEeeeeCCCCce-EEEEEe
Q 004475 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFGTP-AVYTAVEPSPDQKY-VLITSM 194 (751)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G-~~~~lt~~-~~~~~~~~SpDG~~-i~~~~~ 194 (751)
+...||+.++ +| ...+|.-. ..+..-...+.|.. |+|.+.
T Consensus 375 ---------------------------------g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 375 ---------------------------------GKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred ---------------------------------CCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcC
Confidence 1257999999 44 55555433 55666677788865 444443
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.002 Score=65.12 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=121.0
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC--CC--
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP--II-- 566 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~--~~-- 566 (751)
|..-.-.+|.|... +.++-+||++||-|.. -.+.+....+...|.+.||.+++..-.+ ..
T Consensus 70 ~~~~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~ 133 (310)
T PF12048_consen 70 GEERFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSITLPDPAPPAS 133 (310)
T ss_pred CCEEEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEecCCCcccccC
Confidence 34455667777652 3346799999995421 1122222345668889999999822211 00
Q ss_pred -----------CCC--CCCC---------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 567 -----------GEG--DKLP---------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 567 -----------g~g--~~~~---------------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
.-+ .... ...+...+..-+.+++.++.+++. .+|+|+||+.|+++++.+
T Consensus 134 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 134 PNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARY 210 (310)
T ss_pred CccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHH
Confidence 000 0000 012334566777788888888763 459999999999999999
Q ss_pred HHhCCC-ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 619 LAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 619 a~~~p~-~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
+...+. .+.++|++++....... .......+.+++.|+|=|++.....+ ...+.+-.
T Consensus 211 la~~~~~~~daLV~I~a~~p~~~~-------------------n~~l~~~la~l~iPvLDi~~~~~~~~---~~~a~~R~ 268 (310)
T PF12048_consen 211 LAEKPPPMPDALVLINAYWPQPDR-------------------NPALAEQLAQLKIPVLDIYSADNPAS---QQTAKQRK 268 (310)
T ss_pred HhcCCCcccCeEEEEeCCCCcchh-------------------hhhHHHHhhccCCCEEEEecCCChHH---HHHHHHHH
Confidence 998754 47899999886331110 01122345678999999998873221 23333222
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 698 DALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 698 ~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
...+.+. ...+-+.+++..|... .......++|..||..+
T Consensus 269 ~~a~r~~~~~YrQ~~L~~~~~~~~--~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 269 QAAKRNKKPDYRQIQLPGLPDNPS--GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHhccCCCceeEecCCCCCChh--hHHHHHHHHHHHHHHhh
Confidence 3333322 3345555566655542 22223888999999865
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=66.32 Aligned_cols=213 Identities=15% Similarity=0.219 Sum_probs=124.3
Q ss_pred EEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccc
Q 004475 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA 87 (751)
Q Consensus 8 ~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~ 87 (751)
.+||..+ |.+..- +....-+...+||.|.++|+.-.. +....||-++-....++.+...++
T Consensus 84 kvw~a~t----gdelhs--f~hkhivk~~af~~ds~~lltgg~--------ekllrvfdln~p~App~E~~ghtg----- 144 (334)
T KOG0278|consen 84 KVWDAVT----GDELHS--FEHKHIVKAVAFSQDSNYLLTGGQ--------EKLLRVFDLNRPKAPPKEISGHTG----- 144 (334)
T ss_pred hhhhhhh----hhhhhh--hhhhheeeeEEecccchhhhccch--------HHHhhhhhccCCCCCchhhcCCCC-----
Confidence 4556655 555432 223334678899999999987221 223344444433333444433332
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
++..+-|--..+.|+-.+.+ ..+.++|. +|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd-------------------------------------------------~tVRLWD~rTg 175 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADD-------------------------------------------------KTVRLWDHRTG 175 (334)
T ss_pred cceeEEEeccCceEEeeccC-------------------------------------------------CceEEEEeccC
Confidence 57788888777777655322 35667777 77
Q ss_pred -CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc
Q 004475 167 -TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 167 -~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
..+.|--...+.++..|+||+.|.+.- ...+-.||+.+=.+..-...|- ++.
T Consensus 176 t~v~sL~~~s~VtSlEvs~dG~ilTia~--------------gssV~Fwdaksf~~lKs~k~P~-------------nV~ 228 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQDGRILTIAY--------------GSSVKFWDAKSFGLLKSYKMPC-------------NVE 228 (334)
T ss_pred cEEEEEecCCCCcceeeccCCCEEEEec--------------CceeEEeccccccceeeccCcc-------------ccc
Confidence 455554446778899999999887652 2246678776533322222222 233
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-EeeceeEE-EEEecCCceEEEeeeecccce
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFS-VSWCDDSLALVNETWYKTSQT 323 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~ 323 (751)
+.+.+|+.. ++++.. ....+|.+|... +...... ....+.+. +.|||||..-+..+ +.+..
T Consensus 229 SASL~P~k~--~fVaGg-----------ed~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--EDGTi 291 (334)
T KOG0278|consen 229 SASLHPKKE--FFVAGG-----------EDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGS--EDGTI 291 (334)
T ss_pred cccccCCCc--eEEecC-----------cceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccC--CCceE
Confidence 558889884 444331 123677777641 3222221 34456667 99999999655544 45567
Q ss_pred eEEEecCCC
Q 004475 324 RTWLVCPGS 332 (751)
Q Consensus 324 ~l~~~~~~~ 332 (751)
+||......
T Consensus 292 rlWQt~~~~ 300 (334)
T KOG0278|consen 292 RLWQTTPGK 300 (334)
T ss_pred EEEEecCCC
Confidence 899887654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0028 Score=68.04 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=62.9
Q ss_pred ccceeec-----CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEE--ecCCcEEEEee
Q 004475 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFTI 105 (751)
Q Consensus 33 ~~~p~~S-----PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~w--spDg~~l~~~~ 105 (751)
..+|.+| -||+|| |+.. ..+.+|-+++++.-+-.+++..+... ++...++ .|.-++++...
T Consensus 127 ~HHp~~s~t~g~ydGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred cCCCcccccCCccceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeCc
Confidence 3456665 477776 5432 45688888888887777776655421 1222222 36666666553
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhh--heeeEEEEEcCCC-C-ceecCCCceEEeee
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY--YTTAQLVLGSLDG-T-AKDFGTPAVYTAVE 181 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~G-~-~~~lt~~~~~~~~~ 181 (751)
...... +.|+..+.. ...+.+-.+|.+. + ..++.-.+......
T Consensus 195 e~~~Pl---------------------------------pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~ 241 (635)
T PRK02888 195 EFRIPL---------------------------------PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVD 241 (635)
T ss_pred cccccc---------------------------------CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccce
Confidence 221110 011100000 0224555667633 2 23332234556789
Q ss_pred eCCCCceEEEEEec
Q 004475 182 PSPDQKYVLITSMH 195 (751)
Q Consensus 182 ~SpDG~~i~~~~~~ 195 (751)
++|||+++++++.+
T Consensus 242 ~spdGk~afvTsyN 255 (635)
T PRK02888 242 TDYDGKYAFSTCYN 255 (635)
T ss_pred ECCCCCEEEEeccC
Confidence 99999999998643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=69.24 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=106.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
..-.++++||+.||.... ++.-+||-++-.. ..+ .....+..+..+.|||||+.|++...+
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~---t~l---~e~~~~~eV~DL~FS~dgk~lasig~d----- 207 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSML---TIL---EEIAHHAEVKDLDFSPDGKFLASIGAD----- 207 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcch---hhh---hhHhhcCccccceeCCCCcEEEEecCC-----
Confidence 356899999999998532 3444444433211 111 111123357899999999999998432
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC---ceEEeeeeCCCC-
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ- 186 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~---~~~~~~~~SpDG- 186 (751)
...++++ +| ...+.++. ..+....|+.|+
T Consensus 208 ---------------------------------------------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 208 ---------------------------------------------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred ---------------------------------------------ceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 3444555 66 55666643 445688899888
Q ss_pred --ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 187 --KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 187 --~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
...++....+... -...++.+|+-+ . .-++ .........+..+..|+||+. ++...
T Consensus 243 ~~~l~laa~~~~~~~------v~~~~~~~w~~~-~-~l~~----------~~~~~~~~siSsl~VS~dGkf-~AlGT--- 300 (398)
T KOG0771|consen 243 QETLRLAASQFPGGG------VRLCDISLWSGS-N-FLRL----------RKKIKRFKSISSLAVSDDGKF-LALGT--- 300 (398)
T ss_pred CceEEEEEecCCCCc------eeEEEeeeeccc-c-ccch----------hhhhhccCcceeEEEcCCCcE-EEEec---
Confidence 3333322221100 001344444432 1 1111 000111235678999999998 66644
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.+-+++.. .-+...+. .+.+.+. +.|+||.++++-.+. +....|..+..+.
T Consensus 301 ---------~dGsVai~~~~---~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs--~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 301 ---------MDGSVAIYDAK---SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS--DNEAAVTKLAVDK 357 (398)
T ss_pred ---------cCCcEEEEEec---eeeeeEeehhhheeeeeeEEEcCCcCccccccc--CCceeEEEEeecc
Confidence 22455666553 11221222 2334556 999999998876442 2233555555433
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0017 Score=64.58 Aligned_cols=206 Identities=11% Similarity=0.099 Sum_probs=121.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~ 82 (751)
...|++|.+.. .....+. .+....++..+..|.|.|+...++ ....-.-+..+|. ...++....
T Consensus 282 d~~i~vws~~~----~s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~----------d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 282 DEIIRVWSVPL----SSEPTSS-RPHEEPVTGLSLHPTGEYLLSASN----------DGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred cceEEeecccc----ccCcccc-ccccccceeeeeccCCcEEEEecC----------CceEEEEEccCCcEEEEEeeccc
Confidence 34788888866 4444443 456667899999999999998753 2334444555543 233322211
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.-.+...++.|||-.+...+. .+.|-++
T Consensus 347 ---~v~~ts~~fHpDgLifgtgt~-------------------------------------------------d~~vkiw 374 (506)
T KOG0289|consen 347 ---DVEYTSAAFHPDGLIFGTGTP-------------------------------------------------DGVVKIW 374 (506)
T ss_pred ---cceeEEeeEcCCceEEeccCC-------------------------------------------------CceEEEE
Confidence 113567899999943332211 1578888
Q ss_pred cC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
|+ ++ ...++..+ +.+..+.||.+|-+++..+++. .+.+||+..-+ .+...+..++
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V~lwDLRKl~--n~kt~~l~~~------- 432 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SVKLWDLRKLK--NFKTIQLDEK------- 432 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eEEEEEehhhc--ccceeecccc-------
Confidence 88 55 55566556 7889999999999999886652 48899986432 2211122211
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee---ceeEE-EEEecCCceEEEe
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---~~~~~-~~~spdg~~l~~~ 315 (751)
.++..+.|.+.|.+++.+.+ .-++|.+.-. ....+.+... .+... +.|..+.++++-.
T Consensus 433 --~~v~s~~fD~SGt~L~~~g~-------------~l~Vy~~~k~---~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 433 --KEVNSLSFDQSGTYLGIAGS-------------DLQVYICKKK---TKSWTEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred --ccceeEEEcCCCCeEEeecc-------------eeEEEEEecc---cccceeeehhhhcccccceeeecccceEEeec
Confidence 23457899999998444421 1255655532 3344444332 22223 5666666655544
Q ss_pred e
Q 004475 316 T 316 (751)
Q Consensus 316 ~ 316 (751)
+
T Consensus 495 s 495 (506)
T KOG0289|consen 495 S 495 (506)
T ss_pred c
Confidence 4
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=68.89 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCC
Q 004475 580 QLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN 637 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d 637 (751)
...+-+.++++.+.+.. ...+.+|.++||||||.+|-.++...+ +.++.+|.++.+..
T Consensus 61 ~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 61 RQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 33455556666665543 345789999999999999988876543 46888888776543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=64.92 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=86.1
Q ss_pred CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc
Q 004475 167 TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (751)
Q Consensus 167 ~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (751)
.++.+..+ +.+..+.|-...+.|+-++.+ ..+.+||..++...+-...+ ..+.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd-------------~tVRLWD~rTgt~v~sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADD-------------KTVRLWDHRTGTEVQSLEFN-------------SPVT 188 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccC-------------CceEEEEeccCcEEEEEecC-------------CCCc
Confidence 44555555 788888898888888776443 35789999876543221111 2244
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccc
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
++..|+||+. |..+. ...+..++.+ ....|... +..+. .+.+|+...++... ..
T Consensus 189 SlEvs~dG~i-lTia~-------------gssV~Fwdak-----sf~~lKs~k~P~nV~SASL~P~k~~fVaGg----ed 245 (334)
T KOG0278|consen 189 SLEVSQDGRI-LTIAY-------------GSSVKFWDAK-----SFGLLKSYKMPCNVESASLHPKKEFFVAGG----ED 245 (334)
T ss_pred ceeeccCCCE-EEEec-------------CceeEEeccc-----cccceeeccCccccccccccCCCceEEecC----cc
Confidence 7799999996 54432 1245555543 22233333 33444 78889987655533 23
Q ss_pred eeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 323 TRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.-+|.+|.+++ +.+... ......+-. +.|||||..-+..+
T Consensus 246 ~~~~kfDy~Tg--eEi~~~nkgh~gpVhc------VrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 246 FKVYKFDYNTG--EEIGSYNKGHFGPVHC------VRFSPDGELYASGS 286 (334)
T ss_pred eEEEEEeccCC--ceeeecccCCCCceEE------EEECCCCceeeccC
Confidence 46888888886 223332 222222222 78999997655555
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00034 Score=60.47 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccc-----c
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFR-----T 651 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~-----~ 651 (751)
+..+.++.+..+|..+. | ..++|+|.|.||+.|.+++.++. ++++ ++.|..-......++..... .
T Consensus 41 ~p~~a~~ele~~i~~~~-----~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQELG-----D-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHcC-----C-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcc
Confidence 34555665556655442 2 24899999999999999999883 3433 34443221100001111111 0
Q ss_pred chhh-HHHHHhcCcccccCCCCCC-EEEEEcC-CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHH
Q 004475 652 LWEA-TNVYIEMSPITHANKIKKP-ILIIHGE-VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 728 (751)
Q Consensus 652 ~~~~-~~~~~~~~~~~~~~~~~~P-~li~~G~-~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 728 (751)
.|.. +....+... ..+..++.| .|++... .|.+.. ..++.+.+... ...+..|++|.|.. ....
T Consensus 112 ~y~le~~hI~~l~~-~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~-------~~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATLCV-LQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPC-------YEIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHHHH-hhccccCCCcEEEeecccccHHHH--HHHHHHHhhhh-------hheeecCCCccccc---hHHh
Confidence 1100 011111111 122333333 4444444 488765 66666655443 46677889999865 5577
Q ss_pred HHHHHHHHH
Q 004475 729 IWETDRWLQ 737 (751)
Q Consensus 729 ~~~~~~fl~ 737 (751)
++.|+.|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 788888864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.017 Score=58.84 Aligned_cols=57 Identities=7% Similarity=0.137 Sum_probs=40.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcEE
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLL 101 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l 101 (751)
+..+.|.|-+..|..+ -++++|+.++++++.. ++-+...... ..+..++|.++|..|
T Consensus 203 v~~a~FHPtd~nliit----------~Gk~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIIT----------CGKGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVI 261 (626)
T ss_pred EEEEEeccCCCcEEEE----------eCCceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEE
Confidence 5678899999988776 4678999999998863 3333332221 246788999999865
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0043 Score=62.22 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 157 AQLVLGSLDGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 157 ~~l~~~~~~G~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
..||+++.+|..+++ .+. ..-..++|||||+.++++-.. ...|++++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 589999986654444 443 333489999999999887443 3467777765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.044 Score=52.42 Aligned_cols=123 Identities=18% Similarity=0.310 Sum_probs=76.9
Q ss_pred cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcE
Q 004475 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTL 100 (751)
Q Consensus 23 ~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~ 100 (751)
.|++-|+. .++..+|||.-..++-... .++..++|-+... |.. +..-... +.+-.++||-||..
T Consensus 21 ev~~pP~D-sIS~l~FSP~~~~~~~A~S-------WD~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 21 EVPNPPED-SISALAFSPQADNLLAAGS-------WDGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGSK 86 (347)
T ss_pred ecCCCccc-chheeEeccccCceEEecc-------cCCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCce
Confidence 34443443 6889999994444443321 1566677766643 332 2221112 23668899999977
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEE
Q 004475 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYT 178 (751)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~ 178 (751)
++....+ .++-++|+ +|+..++..+ +.+.
T Consensus 87 Vf~g~~D-------------------------------------------------k~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 87 VFSGGCD-------------------------------------------------KQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred EEeeccC-------------------------------------------------CceEEEEccCCCeeeeeeccccee
Confidence 7665332 47788899 8899999877 7788
Q ss_pred eeeeCCCCce-EEEEEecCCcccccccCCCceeEEEEeCCCce
Q 004475 179 AVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (751)
Q Consensus 179 ~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (751)
.+.|-+-..+ ++++ +.+...|-.||.....
T Consensus 118 t~~wv~~~~~~cl~T------------GSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVT------------GSWDKTLKFWDTRSSN 148 (347)
T ss_pred EEEEecCCCcceeEe------------cccccceeecccCCCC
Confidence 8888876652 3332 3345678889887443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00056 Score=76.27 Aligned_cols=259 Identities=13% Similarity=0.163 Sum_probs=137.0
Q ss_pred ccceeecCCCCeEEEEEe-eccccc--ccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcE----EEE
Q 004475 33 INFVSWSPDGKRIAFSVR-VDEEDN--VSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTL----LIF 103 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~-~~~~~~--~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~----l~~ 103 (751)
-...+|||+++.+.-+.. ....+. ..+...+||-++....+. +++-.... ...+..++|++-|.. |+=
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s---~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS---SNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc---cccceeeeecccCCCccceeec
Confidence 345799999962222211 111111 124556788877766552 44432222 224678999988876 332
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC----C-Cc---eecCCC-
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----G-TA---KDFGTP- 174 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G-~~---~~lt~~- 174 (751)
..++ +.|.+++.+ + +. .+...+
T Consensus 86 G~ed-------------------------------------------------G~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 86 GLED-------------------------------------------------GNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred cccC-------------------------------------------------CceEEecchhhccCcchHHHhhhcccC
Confidence 2111 355555552 2 22 222334
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
+.+..+.|+|.+.-++-+..+ ..+|++||+..-+ ...+.. ... ....+..++|+.-=.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~--~~~-------~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG--SQA-------PPSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC--CCC-------CcccceEeccchhhh
Confidence 788899999999855443332 4689999997532 111111 100 123456788887766
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
+ |+. + ...++..-++|+.. + .....+... ...++ +.|.||+..-+..+..+...-.|-+.|+.
T Consensus 175 h-ILA-S----------~s~sg~~~iWDlr~-~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 175 H-ILA-S----------GSPSGRAVIWDLRK-K-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred H-Hhh-c----------cCCCCCceeccccC-C-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 6 332 1 11335666777741 1 112222222 24466 99999988744444333333344444443
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
-. ..+.++.......+.. +.|++.+..+++.+ +...++..|+.++|+.
T Consensus 241 ~a-ssP~k~~~~H~~Gils------lsWc~~D~~lllSs--------------------gkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 241 FA-SSPLKILEGHQRGILS------LSWCPQDPRLLLSS--------------------GKDNRIICWNPNTGEV 288 (1049)
T ss_pred cc-CCchhhhcccccceee------eccCCCCchhhhcc--------------------cCCCCeeEecCCCceE
Confidence 22 1223332332222222 77999887777766 2334788999999876
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0058 Score=55.98 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=110.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..+++.-||++.+... ....|.++++..|....-..+.+++ +...+-|-|...++.. .++
T Consensus 19 aV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYsghG~E----VlD~~~s~Dnskf~s~----GgD 80 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYSGHGHE----VLDAALSSDNSKFASC----GGD 80 (307)
T ss_pred ceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeecCCCce----eeeccccccccccccC----CCC
Confidence 578899999999988753 3356777787776644433333332 4555667777666543 111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..++++|+ +| ..+++..+ +.+..+.|..+...
T Consensus 81 ---------------------------------------------k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 81 ---------------------------------------------KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ---------------------------------------------ceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 47888899 88 56777666 77888999866655
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++-. .|...+.+||-.....+.+-.. +....++..+..+ +.. |+.-+
T Consensus 116 v~Sg-------------sfD~s~r~wDCRS~s~ePiQil----------dea~D~V~Si~v~--~he-IvaGS------- 162 (307)
T KOG0316|consen 116 VASG-------------SFDSSVRLWDCRSRSFEPIQIL----------DEAKDGVSSIDVA--EHE-IVAGS------- 162 (307)
T ss_pred EEec-------------cccceeEEEEcccCCCCccchh----------hhhcCceeEEEec--ccE-EEeec-------
Confidence 4433 3455788898875544332111 1111112122221 111 33322
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..+.+.++++- .+ .++ -....+. +.||+||+.++.++- .+.|-++|.+++
T Consensus 163 -----~DGtvRtydiR---~G---~l~sDy~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tG 215 (307)
T KOG0316|consen 163 -----VDGTVRTYDIR---KG---TLSSDYFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETG 215 (307)
T ss_pred -----cCCcEEEEEee---cc---eeehhhcCCcceeEEecCCCCEEEEeec----cceeeecccchh
Confidence 22455555552 11 111 1233455 899999999877663 356778888885
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.4e-05 Score=49.73 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i 66 (751)
....|+|||||++|+|++.+++ .+..+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 5789999999999999987421 36677875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0023 Score=62.92 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=90.8
Q ss_pred CCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhh
Q 004475 71 TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (751)
Q Consensus 71 ~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (751)
++..+++...... ....+..+++|+||+.+++.... .
T Consensus 9 ~~~~~pv~g~~~~-~~~~~~s~AvS~dg~~~A~v~~~-~----------------------------------------- 45 (253)
T PF10647_consen 9 GGGVTPVPGALGE-GGYDVTSPAVSPDGSRVAAVSEG-D----------------------------------------- 45 (253)
T ss_pred CCceeECCCCcCc-CCccccceEECCCCCeEEEEEEc-C-----------------------------------------
Confidence 4555555322221 11135688999999999998611 1
Q ss_pred hhhheeeEEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCC
Q 004475 151 FDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPP 229 (751)
Q Consensus 151 ~~~~~~~~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~ 229 (751)
....|+.....+..+.+.....+..++|++||...++.. ... ...+.+...++. ....+ ..+.
T Consensus 46 ----~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~-~~~----------~~~~~~~~~~g~~~~~~v-~~~~ 109 (253)
T PF10647_consen 46 ----GGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD-GSG----------GVRVVRDSASGTGEPVEV-DWPG 109 (253)
T ss_pred ----CCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc-CCC----------ceEEEEecCCCcceeEEe-cccc
Confidence 115888888777666665456888999999976555443 211 111222122222 11111 1111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe------E-eeceeEE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL------H-KLDLRFS 302 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~-~~~~~~~ 302 (751)
. ...+.++.+||||.+ ++++... ...++|++..+....++.+..+ . .....+.
T Consensus 110 ~----------~~~I~~l~vSpDG~R-vA~v~~~---------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 110 L----------RGRITALRVSPDGTR-VAVVVED---------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred c----------CCceEEEEECCCCcE-EEEEEec---------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 0 014668999999999 5554321 1224566655432222222222 2 1233455
Q ss_pred -EEEecCCceEEEeee
Q 004475 303 -VSWCDDSLALVNETW 317 (751)
Q Consensus 303 -~~~spdg~~l~~~~~ 317 (751)
+.|++++..++....
T Consensus 170 ~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeecCCCEEEEEeCC
Confidence 899999997666553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0033 Score=66.35 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=59.3
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..++.||+|+. |+-+-.. .......|++++.. . =.....|..+...+. +.|||||++|+..+. ++.
T Consensus 528 v~~l~~s~~gnl-iASaCKS-------~~~ehAvI~lw~t~-~-W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--DRt 595 (764)
T KOG1063|consen 528 VYALAISPTGNL-IASACKS-------SLKEHAVIRLWNTA-N-WLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--DRT 595 (764)
T ss_pred EEEEEecCCCCE-Eeehhhh-------CCccceEEEEEecc-c-hhhhheecccceEEEEEEECCCCcEEEEeec--Cce
Confidence 567788899886 4432211 11122467777763 1 123445667777778 999999999887663 333
Q ss_pred eeEEEecCCCCCCcceee--eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 323 TRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
-.||...-+.. .+.+ . ........|. -.|+||+++++..+
T Consensus 596 ~sl~~~~~~~~-~e~~-fa~~k~HtRIIWd------csW~pde~~FaTaS 637 (764)
T KOG1063|consen 596 VSLYEVQEDIK-DEFR-FACLKAHTRIIWD------CSWSPDEKYFATAS 637 (764)
T ss_pred EEeeeeecccc-hhhh-hccccccceEEEE------cccCcccceeEEec
Confidence 45665522111 1111 0 0011111222 45999999977666
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0018 Score=65.51 Aligned_cols=174 Identities=11% Similarity=0.153 Sum_probs=114.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+....+.-...+||-++ .+++|-+..+.++. ...++...+. .++.+.+||-.+.|+.+..+
T Consensus 123 tvt~v~YN~~DeyiAsvs----------~gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~asd--- 185 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVS----------DGGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIASD--- 185 (673)
T ss_pred eeEEEEecCCcceeEEec----------cCCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeecc---
Confidence 567778888888888874 45789999988875 4555544332 36678999999988876332
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceec---CCC-ceEEeeeeCCCC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~l---t~~-~~~~~~~~SpDG 186 (751)
.+.+-+||+.|.-..+ ..+ ....+++|||-.
T Consensus 186 ---------------------------------------------~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 186 ---------------------------------------------KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred ---------------------------------------------CCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 1467777887732211 112 455689999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
..|+++-. ....|++||...... +..+.+|+. .++|+++|-+ ++.-.
T Consensus 221 e~l~vsVG------------~Dkki~~yD~~s~~s~~~l~y~~Pls---------------tvaf~~~G~~-L~aG~--- 269 (673)
T KOG4378|consen 221 EALLVSVG------------YDKKINIYDIRSQASTDRLTYSHPLS---------------TVAFSECGTY-LCAGN--- 269 (673)
T ss_pred cceEEEec------------ccceEEEeecccccccceeeecCCcc---------------eeeecCCceE-EEeec---
Confidence 88877532 245799999875432 222333433 7899999987 55433
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.+++|+.+|+- .+......+..+...+. ++|-|-
T Consensus 270 ---------s~G~~i~YD~R-~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 270 ---------SKGELIAYDMR-STKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ---------CCceEEEEecc-cCCCCceEeeecccceeEEEeeec
Confidence 45799999984 33334455556666666 677553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00087 Score=65.36 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=87.7
Q ss_pred eeEEeecCCCCCCCCccc-ccCC-CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKE-VHGY-PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~-l~~~-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.||++|+.. -+... |... |+..+...-++|+.+.+|||=.. ...++|.++|+.+=+ +++.-..+
T Consensus 107 ~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--------~t~GdV~l~d~~nl~--~v~~I~aH 172 (391)
T KOG2110|consen 107 SIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--------TTSGDVVLFDTINLQ--PVNTINAH 172 (391)
T ss_pred cEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCC--------CCCceEEEEEcccce--eeeEEEec
Confidence 599999977 55553 2222 23335666777788889999422 346889999976543 33222222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
. +.+..+++||||..||..++.+ .-|.+..
T Consensus 173 ~--~~lAalafs~~G~llATASeKG------------------------------------------------TVIRVf~ 202 (391)
T KOG2110|consen 173 K--GPLAALAFSPDGTLLATASEKG------------------------------------------------TVIRVFS 202 (391)
T ss_pred C--CceeEEEECCCCCEEEEeccCc------------------------------------------------eEEEEEE
Confidence 1 2467899999999999875421 3445555
Q ss_pred C-CC-Cceec---CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc
Q 004475 164 L-DG-TAKDF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (751)
Q Consensus 164 ~-~G-~~~~l---t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (751)
+ +| ...++ +....+.+++||||+++|..++... .++++.++..
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~~ 250 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEKV 250 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEeccc
Confidence 5 66 22233 3236678999999999998876542 4667766543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.01 Score=59.27 Aligned_cols=181 Identities=11% Similarity=0.016 Sum_probs=99.4
Q ss_pred EEEEEcC--CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCC
Q 004475 158 QLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDI 233 (751)
Q Consensus 158 ~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~ 233 (751)
.|+++.. ..+...+-.+ ..+......|.|+||+-.+++..+ -..|..++. ...+... .
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w-------------~Fsd~~~g~~lt~vs~~-~---- 345 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW-------------AFSDISSGSQLTVVSDE-T---- 345 (506)
T ss_pred eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE-------------EEEEccCCcEEEEEeec-c----
Confidence 4555544 3333333333 667788899999999887766432 123333322 2221111 0
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
....+...+|+|||. +|.... ..+.|-++++... ........+.+.+. ++||.+|-+|
T Consensus 346 ------s~v~~ts~~fHpDgL---ifgtgt----------~d~~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 346 ------SDVEYTSAAFHPDGL---IFGTGT----------PDGVVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred ------ccceeEEeeEcCCce---EEeccC----------CCceEEEEEcCCc--cccccCCCCCCceeEEEeccCceEE
Confidence 011244779999995 332211 3467888888521 12233334555667 9999999999
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+..++.. .+.+.|+... ...+.+.......+.. +.|.+.|++|+..+.
T Consensus 405 at~add~----~V~lwDLRKl-~n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g~--------------------- 452 (506)
T KOG0289|consen 405 ATAADDG----SVKLWDLRKL-KNFKTIQLDEKKEVNS------LSFDQSGTYLGIAGS--------------------- 452 (506)
T ss_pred EEEecCC----eEEEEEehhh-cccceeecccccccee------EEEcCCCCeEEeecc---------------------
Confidence 9887432 2555555432 1222222222112222 778899999887752
Q ss_pred CceeEEEecCCCceeEE
Q 004475 393 IPFLDLFDINTGSKERI 409 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l 409 (751)
...+|.++-++..++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEI 469 (506)
T ss_pred eeEEEEEecccccceee
Confidence 23566677666666554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=64.56 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=88.1
Q ss_pred eEEEEEcC-CC-CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
+.|.+..+ ++ ....++.+ ..+.-+.+||-.|+++....+ ...+.+||+.+..+.-- ..-.
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd------------~G~VtlwDv~g~sp~~~--~~~~-- 206 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD------------KGAVTLWDVQGMSPIFH--ASEA-- 206 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc------------CCeEEEEeccCCCcccc--hhhh--
Confidence 46777777 55 55666655 445578899999999988765 34678999987643311 0001
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
...-.+++.|||-...+|+-+ .....|+++|.. ......-......+. ++|+++|.+
T Consensus 207 -------HsAP~~gicfspsne~l~vsV------------G~Dkki~~yD~~---s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 207 -------HSAPCRGICFSPSNEALLVSV------------GYDKKINIYDIR---SQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred -------ccCCcCcceecCCccceEEEe------------cccceEEEeecc---cccccceeeecCCcceeeecCCceE
Confidence 111145789999998744443 245689999984 222222223344566 899999999
Q ss_pred EEEeeeecccceeEEEecCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+... ...+|+.+|+.+.
T Consensus 265 L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRST 282 (673)
T ss_pred EEeec----CCceEEEEecccC
Confidence 98765 3458999999875
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=64.45 Aligned_cols=196 Identities=18% Similarity=0.096 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l 592 (751)
+.|+++|++|. + ...+..++..+...++.|+.+ ...|.+.........+.++++..+.|
T Consensus 1 ~~lf~~p~~gG-----------~----~~~y~~la~~l~~~~~~v~~i---~~~~~~~~~~~~~si~~la~~y~~~I--- 59 (229)
T PF00975_consen 1 RPLFCFPPAGG-----------S----ASSYRPLARALPDDVIGVYGI---EYPGRGDDEPPPDSIEELASRYAEAI--- 59 (229)
T ss_dssp -EEEEESSTTC-----------S----GGGGHHHHHHHTTTEEEEEEE---CSTTSCTTSHEESSHHHHHHHHHHHH---
T ss_pred CeEEEEcCCcc-----------C----HHHHHHHHHhCCCCeEEEEEE---ecCCCCCCCCCCCCHHHHHHHHHHHh---
Confidence 35889998741 1 111223444444444777773 33444322233334555555444444
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCCCCCCcc---Ccccc---------cccc-h--h
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYNKTLTPF---GFQTE---------FRTL-W--E 654 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d~~~~~~---~~~~~---------~~~~-~--~ 654 (751)
++... ..++.|+|||+||.+|..+|.+- ...+..++++.+......... ..... ...+ . .
T Consensus 60 ~~~~~--~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (229)
T PF00975_consen 60 RARQP--EGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSDEQFIEELRRIGGTPDASLE 137 (229)
T ss_dssp HHHTS--SSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHHHHHHHHHHHHCHHHHHHCH
T ss_pred hhhCC--CCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhHHHHHHHHHHhcCCchhhhc
Confidence 43321 23899999999999999998642 234777887775432111000 00000 0000 0 0
Q ss_pred hH--------------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcC
Q 004475 655 AT--------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHVY 719 (751)
Q Consensus 655 ~~--------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~ 719 (751)
.. ....... ........+|+++.....|+... .. ..+....+.. ....++++.++| +|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~W~~~~~~~~~~~~v~G-~H~~ 212 (229)
T PF00975_consen 138 DEELLARLLRALRDDFQALENYS-IRPIDKQKVPITLFYALDDPLVS--MD-RLEEADRWWDYTSGDVEVHDVPG-DHFS 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS--TTSSSESSEEEEEEECSSSSSS--HH-CGGHHCHHHGCBSSSEEEEEESS-ETTG
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc-CCccccCCCcEEEEecCCCcccc--ch-hhhhHHHHHHhcCCCcEEEEEcC-CCcE
Confidence 00 0001111 11111113578888888888765 22 1222332443 345688889987 6876
Q ss_pred CccccHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWL 736 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl 736 (751)
+..++..+..+.|.+||
T Consensus 213 ~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 213 MLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp HHSTTHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHhccC
Confidence 54345555555555554
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=63.24 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
++--.+.-+|+++... +.+..+.|-||||++|+.+..++|+.+.++|+++|.+|....--++... +.+.
T Consensus 84 ~~rH~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yydd--------Dv~y- 152 (227)
T COG4947 84 AERHRAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDD--------DVYY- 152 (227)
T ss_pred HHHHHHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccC--------ceee-
Confidence 3334444466766532 3567889999999999999999999999999999998843211000000 0111
Q ss_pred cCcccccCCCC----------CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 662 MSPITHANKIK----------KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 662 ~~~~~~~~~~~----------~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
++|..++..+. .-+.+-.|..|+.. .+.+++.+.|..+..+..+.+..+..|.+
T Consensus 153 nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 153 NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred cChhhhccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 33444333332 34777888888874 45667888888887888888887777764
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0019 Score=65.50 Aligned_cols=130 Identities=22% Similarity=0.169 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCC-C-CCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cCc-------------
Q 004475 582 VSSAEAAVEEVVRRGV-A-DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGF------------- 645 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~-i-d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~~~------------- 645 (751)
+-|...|+.++.++-. . +.-++.++|+|.||++|.+++.-.|..+.+++=.++........ .+.
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 5788888888887622 2 23489999999999999999999999999999877754321100 000
Q ss_pred --------ccccccchhhH---------HHHHhcCc--cccc---CCC--CCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 646 --------QTEFRTLWEAT---------NVYIEMSP--ITHA---NKI--KKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 646 --------~~~~~~~~~~~---------~~~~~~~~--~~~~---~~~--~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
.....+.|... +.+.-... ..++ .+. ++-....|+..|..+| ...-.++++.++
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~l~~~l~ 320 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEELYEILK 320 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHHHHHHHH
Confidence 00113344321 11100000 1111 111 3446679999999999 999999999999
Q ss_pred hCCCcEEEEEeC
Q 004475 702 GHGALSRLVLLP 713 (751)
Q Consensus 702 ~~~~~~~~~~~~ 713 (751)
+.|-+++++++.
T Consensus 321 ~lgfda~l~lIk 332 (403)
T PF11144_consen 321 NLGFDATLHLIK 332 (403)
T ss_pred HcCCCeEEEEec
Confidence 999999999883
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=64.50 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...+|-|.+.++.|.+++ ....+++.+..++.|.+++...+.+..|.-+.....+++.+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 446899999999999999 99999999999999999999999999999988888899999888774
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0022 Score=71.14 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=56.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEE-EEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAF-SVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf-~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
+|.+.|.++ +..+.+. +.....+.+|+|||||++||| ++-. .-.+...||+.++.+....++--.-+
T Consensus 330 ~L~~~D~dG----~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e-----~~~g~s~vYv~~L~t~~~~~vkl~ve-- 397 (912)
T TIGR02171 330 NLAYIDYTK----GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE-----GLPGKSSVYVRNLNASGSGLVKLPVE-- 397 (912)
T ss_pred eEEEEecCC----CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec-----CCCCCceEEEEehhccCCCceEeecc--
Confidence 788999988 8888772 133446899999999999999 5431 00257889999998754333310111
Q ss_pred ccceeeeeEE--ecCCc-EEEEeecCCCC
Q 004475 85 LNAVFGSFVW--VNNST-LLIFTIPSSRR 110 (751)
Q Consensus 85 ~~~~~~~~~w--spDg~-~l~~~~~~~~~ 110 (751)
+ ..-|+| ..+|. .|+|.+..+..
T Consensus 398 -~--aaiprwrv~e~gdt~ivyv~~a~nn 423 (912)
T TIGR02171 398 -N--AAIPRWRVLENGDTVIVYVSDASNN 423 (912)
T ss_pred -c--ccccceEecCCCCeEEEEEcCCCCC
Confidence 1 223456 46664 46676554433
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0019 Score=67.65 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=43.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+|-|||+.|... .+..|+++|+..|..-+-..+... .+..++||-||++.+..
T Consensus 14 ci~d~afkPDGsqL~lA-----------Ag~rlliyD~ndG~llqtLKgHKD----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----------AGSRLLVYDTSDGTLLQPLKGHKD----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEe-----------cCCEEEEEeCCCcccccccccccc----eEEEEEEccCCceeccC
Confidence 57889999999999884 447899999877654333333221 47789999999987755
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=67.23 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=108.7
Q ss_pred cceeEEeecCCCCCCC--CcccccC--CCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeecc
Q 004475 4 FTGIGIHRLLPDDSLG--PEKEVHG--YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLF 78 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g--~~~~l~~--~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt 78 (751)
.+.+-+|.+.+....| ....|-. +++...+...++||||++||+.. -....||.+..+... .+.+-
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~vk~~~v~ 422 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNVKVINVD 422 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcceeEEEec
Confidence 4456667776622222 1122221 34555788999999999999954 233566666655422 22221
Q ss_pred CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
..+.. .-......++-|+..|++.+.. ..+
T Consensus 423 ~~~~~--~~~a~~i~ftid~~k~~~~s~~------------------------------------------------~~~ 452 (691)
T KOG2048|consen 423 DVPLA--LLDASAISFTIDKNKLFLVSKN------------------------------------------------IFS 452 (691)
T ss_pred cchhh--hccceeeEEEecCceEEEEecc------------------------------------------------cce
Confidence 11111 1123466788898888777521 035
Q ss_pred EEEEcCCC----CceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 159 LVLGSLDG----TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 159 l~~~~~~G----~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
|..+++++ +...++.. ..+..+.-||||++|++.... ..|++|++++.+...+....
T Consensus 453 le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~~rl--- 516 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLKVRL--- 516 (691)
T ss_pred eEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecchhcc---
Confidence 55565522 22223222 677889999999999998643 47999999998877653211
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
+..++..+++|.-+..|+.+. ..+++|-++++
T Consensus 517 ---------n~~vTa~~~~~~~~~~lvvat------------s~nQv~efdi~ 548 (691)
T KOG2048|consen 517 ---------NIDVTAAAFSPFVRNRLVVAT------------SNNQVFEFDIE 548 (691)
T ss_pred ---------CcceeeeeccccccCcEEEEe------------cCCeEEEEecc
Confidence 122446788865554366643 23578887774
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=60.36 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=113.1
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
.+.+.++-..+ +++|++|-+|--|-..... |...............|.++-++.+ +...|...
T Consensus 10 ~v~V~v~G~~~------~~kp~ilT~HDvGlNh~sc----------F~~ff~~~~m~~i~~~f~i~Hi~aP-Gqe~ga~~ 72 (283)
T PF03096_consen 10 SVHVTVQGDPK------GNKPAILTYHDVGLNHKSC----------FQGFFNFEDMQEILQNFCIYHIDAP-GQEEGAAT 72 (283)
T ss_dssp EEEEEEESS--------TTS-EEEEE--TT--HHHH----------CHHHHCSHHHHHHHTTSEEEEEE-T-TTSTT---
T ss_pred EEEEEEEecCC------CCCceEEEeccccccchHH----------HHHHhcchhHHHHhhceEEEEEeCC-CCCCCccc
Confidence 67777775432 2479999999854221110 2222222334445577888774332 22223222
Q ss_pred CCchh----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--------
Q 004475 573 PNDRF----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-------- 640 (751)
Q Consensus 573 ~~~~~----~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-------- 640 (751)
.+..+ .+++.+++..+++++. -+.++.+|--+||++-.+.|..+|+++.++|++++......
T Consensus 73 ~p~~y~yPsmd~LAe~l~~Vl~~f~------lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K 146 (283)
T PF03096_consen 73 LPEGYQYPSMDQLAEMLPEVLDHFG------LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQK 146 (283)
T ss_dssp --TT-----HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhCC------ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHH
Confidence 22232 3455566666666652 25699999999999999999999999999999998643110
Q ss_pred ------CccCccccc--ccch---------hh----------------H-------HHHHhcC-cccccCCCCCCEEEEE
Q 004475 641 ------TPFGFQTEF--RTLW---------EA----------------T-------NVYIEMS-PITHANKIKKPILIIH 679 (751)
Q Consensus 641 ------~~~~~~~~~--~~~~---------~~----------------~-------~~~~~~~-~~~~~~~~~~P~li~~ 679 (751)
...++.... ...| .. + ..|.... .....+...||+|++.
T Consensus 147 ~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvv 226 (283)
T PF03096_consen 147 LSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVV 226 (283)
T ss_dssp HH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEE
T ss_pred HhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEE
Confidence 000100000 0000 00 0 0111111 1112345679999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|..-+. ...+.++..+|.. .+..+..++++|-... .+.+....+.+.-|+..
T Consensus 227 G~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 227 GDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp ETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHHH
T ss_pred ecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHcc
Confidence 999987 5777888888854 4688999999866554 55566666676666653
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0057 Score=56.03 Aligned_cols=179 Identities=14% Similarity=0.091 Sum_probs=92.2
Q ss_pred eEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|.+|+. .|. ++....+ ..+.+++.|-|...++--.. ...+++||+++++..+-.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------------Dk~v~vwDV~TGkv~Rr~-------- 97 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------------DKAVQVWDVNTGKVDRRF-------- 97 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------------CceEEEEEcccCeeeeec--------
Confidence 35666777 663 3444434 66778899999988765432 235889999987654321
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEEEEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFSVSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~spdg~~l 312 (751)
.....++..+.|+.+.. +++... -...+.++|.-.. ..+|.++.. ....+. +..-.+..|
T Consensus 98 ----rgH~aqVNtV~fNeesS--Vv~Sgs-----------fD~s~r~wDCRS~-s~ePiQildea~D~V~-Si~v~~heI 158 (307)
T KOG0316|consen 98 ----RGHLAQVNTVRFNEESS--VVASGS-----------FDSSVRLWDCRSR-SFEPIQILDEAKDGVS-SIDVAEHEI 158 (307)
T ss_pred ----ccccceeeEEEecCcce--EEEecc-----------ccceeEEEEcccC-CCCccchhhhhcCcee-EEEecccEE
Confidence 22223344677777765 444221 2235666665311 112222221 111122 222223334
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+..+. .+..+.| ++..+ +...+--.+.+.. .+||+||+-++..+.+.
T Consensus 159 vaGS~--DGtvRty--diR~G----~l~sDy~g~pit~------vs~s~d~nc~La~~l~s------------------- 205 (307)
T KOG0316|consen 159 VAGSV--DGTVRTY--DIRKG----TLSSDYFGHPITS------VSFSKDGNCSLASSLDS------------------- 205 (307)
T ss_pred Eeecc--CCcEEEE--Eeecc----eeehhhcCCccee------EEecCCCCEEEEeeccc-------------------
Confidence 43331 1222333 33332 1111111111111 78999999888888543
Q ss_pred CceeEEEecCCCceeEEe
Q 004475 393 IPFLDLFDINTGSKERIW 410 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~ 410 (751)
.|+++|.+||++-...
T Consensus 206 --tlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 206 --TLRLLDKETGKLLKSY 221 (307)
T ss_pred --eeeecccchhHHHHHh
Confidence 7899999999875443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.034 Score=64.85 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..+.+++-+|+..-..++ +--..++|-|.|..|+.+..... ..++..+..+|-+.....-.
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~----------~~~VvFfErNGLrhgeF~l~------- 299 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD----------RHDVVFFERNGLRHGEFTLR------- 299 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC----------CcEEEEEecCCcEeeeEecC-------
Confidence 567777778876666555 33458899999999998765321 24677777777544332111
Q ss_pred CccCCccCCCceeeeecCCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
+......+..+.|++|+.-|.+.
T Consensus 300 --~~~~~~~v~~l~Wn~ds~iLAv~ 322 (928)
T PF04762_consen 300 --FDPEEEKVIELAWNSDSEILAVW 322 (928)
T ss_pred --CCCCCceeeEEEECCCCCEEEEE
Confidence 11122335689999999974444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.003 Score=68.34 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=109.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec-CCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~ 110 (751)
.+...+||-++ .|+-.++ +. .+.+|++...+--.+..+.. .+..++|.| |.++.+-.+-+
T Consensus 371 DILDlSWSKn~-fLLSSSM--------DK--TVRLWh~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiSGSLD--- 431 (712)
T KOG0283|consen 371 DILDLSWSKNN-FLLSSSM--------DK--TVRLWHPGRKECLKVFSHND-----FVTCVAFNPVDDRYFISGSLD--- 431 (712)
T ss_pred hheecccccCC-eeEeccc--------cc--cEEeecCCCcceeeEEecCC-----eeEEEEecccCCCcEeecccc---
Confidence 47789999987 4444332 33 44444555555555544444 478899999 45555444322
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..+.+|++ +-++...++- ..+..++|+|||+.
T Consensus 432 ----------------------------------------------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 432 ----------------------------------------------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ----------------------------------------------cceEEeecCcCeeEeehhhhhhheeEEeccCCce
Confidence 34555666 4466556655 67789999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
.++-.... ....|+..+-+.+.-.........- ....-+.++.+.|-...-|++++
T Consensus 466 avIGt~~G-------------~C~fY~t~~lk~~~~~~I~~~~~Kk----~~~~rITG~Q~~p~~~~~vLVTS------- 521 (712)
T KOG0283|consen 466 AVIGTFNG-------------YCRFYDTEGLKLVSDFHIRLHNKKK----KQGKRITGLQFFPGDPDEVLVTS------- 521 (712)
T ss_pred EEEEEecc-------------EEEEEEccCCeEEEeeeEeeccCcc----ccCceeeeeEecCCCCCeEEEec-------
Confidence 98865543 3445555544332211111000000 00012446666654443255554
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEe---eceeEEEEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
...+|.++|..+ ......+.. ...++..+|+.||++|+.+++ ...+|+.+.+.
T Consensus 522 -----nDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 522 -----NDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKNDS 577 (712)
T ss_pred -----CCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEEEEeec----CceEEEEeCCC
Confidence 335788887631 111112211 111222789999999999882 24566666544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.097 Score=50.33 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
....+|.+.|.. .++...|||.+..|+..+. + +.|.+++....+.++...... .+-.++|.++.
T Consensus 3 ~~~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~-----plL~c~F~d~~ 66 (323)
T KOG1036|consen 3 PNEFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGA-----PLLDCAFADES 66 (323)
T ss_pred ccccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCC-----ceeeeeccCCc
Confidence 345566665555 5899999999999988763 3 455555655666666654443 25677888766
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ce
Q 004475 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AV 176 (751)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~ 176 (751)
+ +++..-+ .+|.++|+ +|+..++..+ ..
T Consensus 67 ~-~~~G~~d-------------------------------------------------g~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 67 T-IVTGGLD-------------------------------------------------GQVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred e-EEEeccC-------------------------------------------------ceEEEEEecCCcceeeccCCCc
Confidence 4 5554211 58899999 6677777666 77
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (751)
+..+..++--..++. +.|...|-+||+..
T Consensus 97 i~ci~~~~~~~~vIs-------------gsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 97 IRCIEYSYEVGCVIS-------------GSWDKTIKFWDPRN 125 (323)
T ss_pred eEEEEeeccCCeEEE-------------cccCccEEEEeccc
Confidence 888888864333332 23456788999876
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0077 Score=57.84 Aligned_cols=218 Identities=7% Similarity=0.023 Sum_probs=113.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..-+|++|+..|++.... .++.+|...+.+. +..-. +......+..+.|+|..
T Consensus 11 ~pitchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~ht----------ls~Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHT----------LSEHDKIVTGVDWAPKS 67 (361)
T ss_pred CceeeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceecee----------hhhhCcceeEEeecCCC
Confidence 456678999999999998554 3566777665542 21100 01111234578999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccC-CCCCCCC---ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPA-EPAEGEK---PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~---~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
++ |+-++. ...-|++.. + ++. .-.|...+.... +.|||.+..++..+.. .-..++.+
T Consensus 68 nr-Ivtcs~------------drnayVw~~~~---~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga--r~isVcy~ 129 (361)
T KOG1523|consen 68 NR-IVTCSH------------DRNAYVWTQPS---GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA--RLISVCYY 129 (361)
T ss_pred Cc-eeEccC------------CCCccccccCC---CCeeccceeEEEeccceeeEeecCcCceEEeccCc--cEEEEEEE
Confidence 99 777652 234555554 2 332 334556677777 9999999998876622 22345544
Q ss_pred cCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 329 CPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
.-+.. --....+.... ..+.. +.|.|++-.|+..+ .|+.-.++ ..|+-+++.....
T Consensus 130 E~ENd-WWVsKhikkPirStv~s------ldWhpnnVLlaaGs----~D~k~rVf------------SayIK~Vdekpap 186 (361)
T KOG1523|consen 130 EQEND-WWVSKHIKKPIRSTVTS------LDWHPNNVLLAAGS----TDGKCRVF------------SAYIKGVDEKPAP 186 (361)
T ss_pred ecccc-eehhhhhCCccccceee------eeccCCcceecccc----cCcceeEE------------EEeeeccccCCCC
Confidence 44432 00000000100 00111 56777776665555 22222221 1233344333222
Q ss_pred EEeeccchhhhhceeee--e-cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 408 RIWESNREKYFETAVAL--V-FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 408 ~l~~~~~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
.-|...-. +=.....+ . +-.+...|||+|++|+|.. ....++.+|....
T Consensus 187 ~pWgsk~P-FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~----Hds~v~~~da~~p 238 (361)
T KOG1523|consen 187 TPWGSKMP-FGQLMSEASSSGGWVHGVLFSPSGNRLAWVG----HDSTVSFVDAAGP 238 (361)
T ss_pred CCCccCCc-HHHHHHhhccCCCceeeeEeCCCCCEeeEec----CCCceEEeecCCC
Confidence 22332211 00000011 0 1123478999999999985 3445778886544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=73.74 Aligned_cols=254 Identities=15% Similarity=0.194 Sum_probs=148.0
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe----EEEEEeecccccccCCceeEEEEEc--CCCCeeeccC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR----IAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFE 79 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~----iaf~~~~~~~~~~~~~~~~l~i~~~--~~g~~~~lt~ 79 (751)
++-++.++--+.++..+.+-.+....+....+|++-|.. ||=-. .++...||-.+. ++++...|..
T Consensus 40 slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~--------edG~I~ly~p~~~~~~~~~~~la~ 111 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL--------EDGNIVLYDPASIIANASEEVLAT 111 (1049)
T ss_pred ccceeeecccCccccccccccccccccceeeeecccCCCccceeeccc--------cCCceEEecchhhccCcchHHHhh
Confidence 344444443224444466655555557889999999988 44311 134444443332 2344444433
Q ss_pred CCCccccceeeeeEEecCCc-EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 80 SPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
...+ ++.|..+.|.|.+. .||-... .++
T Consensus 112 ~~~h--~G~V~gLDfN~~q~nlLASGa~-------------------------------------------------~ge 140 (1049)
T KOG0307|consen 112 KSKH--TGPVLGLDFNPFQGNLLASGAD-------------------------------------------------DGE 140 (1049)
T ss_pred hccc--CCceeeeeccccCCceeeccCC-------------------------------------------------CCc
Confidence 3322 23467889999876 5554421 168
Q ss_pred EEEEcCCCCceecCC----C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCC
Q 004475 159 LVLGSLDGTAKDFGT----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAED 232 (751)
Q Consensus 159 l~~~~~~G~~~~lt~----~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 232 (751)
|+++|+..-.++.+. . ..+..++|...-.+|+-+... .....+||+..++ +..++.....
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-- 206 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-- 206 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc--
Confidence 999999553333332 1 678889999888888765443 2356789998663 2233332221
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
.....++|+||....|+.++ .++.. ..|-++|+- +.....+.++.+...+- +.|++.+..
T Consensus 207 ---------~~~S~l~WhP~~aTql~~As-~dd~~--------PviqlWDlR-~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 207 ---------MHCSVLAWHPDHATQLLVAS-GDDSA--------PVIQLWDLR-FASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ---------cceeeeeeCCCCceeeeeec-CCCCC--------ceeEeeccc-ccCCchhhhcccccceeeeccCCCCch
Confidence 23457899999998666655 22222 256666652 22334455555555565 999999877
Q ss_pred EEEeeeecccceeEEEecCCCCCCcceeeeecc--cccccCCCCCCCeeeCCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGT 364 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spDG~ 364 (751)
++.++.. ..+++..+.+++ ..|.... .++++. +.|.|-.-
T Consensus 268 lllSsgk---D~~ii~wN~~tg----Evl~~~p~~~nW~fd------v~w~pr~P 309 (1049)
T KOG0307|consen 268 LLLSSGK---DNRIICWNPNTG----EVLGELPAQGNWCFD------VQWCPRNP 309 (1049)
T ss_pred hhhcccC---CCCeeEecCCCc----eEeeecCCCCcceee------eeecCCCc
Confidence 7776633 357888888885 3443333 244443 66777664
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00018 Score=80.30 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC-CCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~ 571 (751)
-+..-+|.|...... + +|++|++|||++..++.. .+... .....+..+..+|+.++|+ +..|....
T Consensus 96 CLylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~~--------~~~~~--~~~~~~~~~~VVvVt~~YRLG~lGF~st 162 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSAS--------SFEII--SPAYVLLLKDVVVVTINYRLGPLGFLST 162 (545)
T ss_pred CceEEEeccCCCccC--C-CCEEEEEeCCceeecccc--------chhhc--CchhccccCCEEEEEecccceeceeeec
Confidence 367778888764322 2 899999999986543321 11111 1122334567888887764 22232111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc-C--CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRR-G--VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~-~--~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~ 635 (751)
..........+.|...+++|+++. . .=|+++|.|+|||+||..+..+.... ...|..+|.+++.
T Consensus 163 ~d~~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 163 GDSAAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 100111223355888999999875 1 13899999999999999997776532 2467777777775
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0025 Score=62.00 Aligned_cols=162 Identities=12% Similarity=0.188 Sum_probs=91.4
Q ss_pred EEEEEcC--CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~--~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
+|-++|. +-..+.++-+ ..+..+.|+|-...|+..... +..|++||+..+.+..-......
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s------------DrsIvLyD~R~~~Pl~KVi~~mR---- 231 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS------------DRSIVLYDLRQASPLKKVILTMR---- 231 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc------------CCceEEEecccCCccceeeeecc----
Confidence 4555565 3355556555 678899999999888776532 34689999976543221111111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg~~l 312 (751)
-..++|+|++- .|+.+. ....||.+|.-.. ..+..+... --.+. +.|||-|+-+
T Consensus 232 ---------TN~IswnPeaf---nF~~a~----------ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 232 ---------TNTICWNPEAF---NFVAAN----------EDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ---------ccceecCcccc---ceeecc----------ccccceehhhhhh--cccchhhcccceeEEEeccCCCcchh
Confidence 12689999543 332211 2347999987311 112122222 22333 8999999998
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeee-ecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.++- ...|-+++...+ ..+.+. ...-+.+.. +.||.|.++|+..+.
T Consensus 288 vsgsy----DksIRIf~~~~~--~SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 288 VSGSY----DKSIRIFPVNHG--HSRDIYHTKRMQHVFC------VKYSMDSKYIISGSD 335 (433)
T ss_pred ccccc----cceEEEeecCCC--cchhhhhHhhhheeeE------EEEeccccEEEecCC
Confidence 87552 233444444443 223332 122223333 789999999988773
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.003 Score=66.19 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|+++|. +| ..++|..+ ..+..++||.||++++--+.+ ..+.+|+..-.-.-+.
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aD-------------K~VI~W~~klEG~LkY--------- 90 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD-------------KSVIIWTSKLEGILKY--------- 90 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCc-------------eeEEEecccccceeee---------
Confidence 58999999 77 67778777 778899999999998754332 2355666532111111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
+....+..++|+|=... ++-++..+-+ +++.+ ...... .....++. .+|..||+++
T Consensus 91 -----SH~D~IQCMsFNP~~h~-LasCsLsdFg-------------lWS~~---qK~V~K-~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 91 -----SHNDAIQCMSFNPITHQ-LASCSLSDFG-------------LWSPE---QKSVSK-HKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred -----ccCCeeeEeecCchHHH-hhhcchhhcc-------------ccChh---hhhHHh-hhhheeEEEeeecCCCcEE
Confidence 11122446778887766 4444422211 22221 001100 01123444 7999999999
Q ss_pred EEeeeecccceeEEEecCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~ 332 (751)
+.+.. +.+|-+.+..+
T Consensus 148 alG~~----nGTIsiRNk~g 163 (1081)
T KOG1538|consen 148 ALGMF----NGTISIRNKNG 163 (1081)
T ss_pred EEecc----CceEEeecCCC
Confidence 88662 23455555544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.036 Score=52.68 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCcccccCCCCcccccceeecCCCCe-EEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
|+...-+.+|.. ....+++|--.+ ++|.++ -+.-.++.|..+++ +..+...+.+- .+..=+|||
T Consensus 58 Gk~v~~~~lpaR--~Hgi~~~p~~~ravafARr---------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs~ 123 (366)
T COG3490 58 GKIVFATALPAR--GHGIAFHPALPRAVAFARR---------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFSP 123 (366)
T ss_pred Cceeeeeecccc--cCCeecCCCCcceEEEEec---------CCceEEEECCCCCcCcEEEecccCce---eecccccCC
Confidence 444443335543 456778887655 566543 22556677887765 34444333321 233448999
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC---
Q 004475 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--- 173 (751)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~--- 173 (751)
||++|+.+-.+.+. ...-|-++|.+-.-+++.+
T Consensus 124 dG~~LYATEndfd~--------------------------------------------~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 124 DGRLLYATENDFDP--------------------------------------------NRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCcEEEeecCCCCC--------------------------------------------CCceEEEEecccccceeccccc
Confidence 99988766222111 1145667777433333322
Q ss_pred C-ceEEeeeeCCCCceEEEEE
Q 004475 174 P-AVYTAVEPSPDQKYVLITS 193 (751)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~ 193 (751)
. -...++.|.+||+.|++..
T Consensus 160 ~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCcCcceeEEecCCcEEEEeC
Confidence 2 4556899999999998863
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.016 Score=55.76 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.+..=+|++|++.||... ...+|.|....+.+ .+++-....++ ..+..+.|+|.+.+|.-.+-
T Consensus 12 pitchAwn~drt~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred ceeeeeecCCCceEEecc----------CCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccC
Confidence 366679999999999963 33566666665666 33332223332 24667999999999987744
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.02 Score=56.58 Aligned_cols=150 Identities=14% Similarity=0.062 Sum_probs=80.2
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.-+.|.|--.-+++++.. .+.+.+|++.+++...-..++ ..+.+++|+-||.
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~hp-------------d~i~S~sfn~dGs 186 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLDHP-------------DMVYSMSFNRDGS 186 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecCCC-------------CeEEEEEeccCCc
Confidence 455678899988777776543 457889999988643211122 3356889999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee-EE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR-FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
. ++-+. ....|.++|.- ++....+-..+.+. .. +.|-.+|+ |+.+.-..-...++-+.+.+.
T Consensus 187 ~-l~Ttc------------kDKkvRv~dpr--~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 187 L-LCTTC------------KDKKVRVIDPR--RGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred e-eeeec------------ccceeEEEcCC--CCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCccc
Confidence 8 54433 12367777752 22222121122222 23 77889999 332221111223344445544
Q ss_pred CCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
- +++..+.+.+.. .+.-+|-|.+|-+.|+...+
T Consensus 251 l-~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 251 L-EEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred c-cCcceeEEeccC-----CceEEeeecCCCCEEEEEec
Confidence 3 333333332221 13333668888876665553
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0057 Score=58.48 Aligned_cols=224 Identities=15% Similarity=0.146 Sum_probs=125.9
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCc-hHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~v~~ 559 (751)
.++..+.+.-| .+...++--.+ +++|++|-.|.-|-..... |.+... .....++.+ |.|+-
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~------~~kpaiiTyhDlglN~~sc----------Fq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK------GNKPAIITYHDLGLNHKSC----------FQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC------CCCceEEEecccccchHhH----------hHHhhcCHhHHHHHhh-eEEEe
Confidence 45555555444 57777775332 2468899999865332221 111111 223355556 87776
Q ss_pred cCCCCCCCC--CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 560 GPSIPIIGE--GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 560 ~~~~~~~g~--g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
++. +|+ |-...+. ...+++.+++..+++++. -+.|.-+|--+|+++-.+.|..+|+++-++|+++
T Consensus 84 V~~---PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn 154 (326)
T KOG2931|consen 84 VDA---PGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLIN 154 (326)
T ss_pred cCC---CccccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEe
Confidence 433 333 2111111 234566777777777662 3568999999999999999999999999999998
Q ss_pred CCCCCCC-Ccc-------------Ccc-------------ccc-cc--------------------chhhHHHHHhcCcc
Q 004475 634 GSYNKTL-TPF-------------GFQ-------------TEF-RT--------------------LWEATNVYIEMSPI 665 (751)
Q Consensus 634 ~~~d~~~-~~~-------------~~~-------------~~~-~~--------------------~~~~~~~~~~~~~~ 665 (751)
+...-.. .+| ++. .+. .. .+.....|.....+
T Consensus 155 ~~~~a~gwiew~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL 234 (326)
T KOG2931|consen 155 CDPCAKGWIEWAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDL 234 (326)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCc
Confidence 7533110 000 000 000 00 00000111111111
Q ss_pred c-----ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 666 T-----HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 666 ~-----~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
. ....++||+|++.|..-+. .+.+.++..+|.. ....+..+.+++-... .+.+....+.+.-|+..
T Consensus 235 ~~~r~~~~~tlkc~vllvvGd~Sp~----~~~vv~~n~~Ldp--~~ttllk~~d~g~l~~-e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 235 SIERPKLGTTLKCPVLLVVGDNSPH----VSAVVECNSKLDP--TYTTLLKMADCGGLVQ-EEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccCCCcCccccccEEEEecCCCch----hhhhhhhhcccCc--ccceEEEEcccCCccc-ccCchHHHHHHHHHHcc
Confidence 1 0114569999999999876 3556666666643 3567888888876654 33455566666666653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.052 Score=51.93 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=52.2
Q ss_pred eEEEEEcCCCC--ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDGT--AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G~--~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
-.+|.+.-+|. .+-..+. +.+...+||.||..++....++ ++-+||+.+++.+++..+...
T Consensus 52 VR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk-------------~~k~wDL~S~Q~~~v~~Hd~p--- 115 (347)
T KOG0647|consen 52 VRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK-------------QAKLWDLASGQVSQVAAHDAP--- 115 (347)
T ss_pred eEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC-------------ceEEEEccCCCeeeeeecccc---
Confidence 35565555662 2323333 7788999999998777665443 577999999988887555433
Q ss_pred CCccCCccCCCceeeeecCCCceEEEE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
++.+.|-+...+-++.+
T Consensus 116 ----------vkt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 116 ----------VKTCHWVPGMNYQCLVT 132 (347)
T ss_pred ----------eeEEEEecCCCcceeEe
Confidence 56788888877534443
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.004 Score=56.56 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=66.5
Q ss_pred CchHHHHHHhCCeEEEEcCCC-CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 543 TPTSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 543 ~~~~~~~~~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+..++.+.+|.++.+.-+ .+.|+|.. ...+..+|+..+++++.-..+ ..+|+++|||-|..-.++++..
T Consensus 55 ~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTn 127 (299)
T KOG4840|consen 55 TTMLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTN 127 (299)
T ss_pred HHHHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHh
Confidence 345666888899999874332 34556553 345568899999998865443 3489999999999999988854
Q ss_pred C--CCceeEEEEccCCCCCC
Q 004475 622 A--PHLFCCGIARSGSYNKT 639 (751)
Q Consensus 622 ~--p~~~~~~v~~~~~~d~~ 639 (751)
. |..+.++|+.+|+.|..
T Consensus 128 t~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 128 TTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccchHHHHHHHHhCccchhh
Confidence 3 56788999999998865
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00097 Score=65.87 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=87.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
-+|..||.-+ +..+.- .|.+..+.+...|+||..|.-.+ ....|-++|+.+.+.++...-....
T Consensus 322 kkvRfwD~Rs----~~~~~s--v~~gg~vtSl~ls~~g~~lLsss----------RDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 322 KKVRFWDIRS----ADKTRS--VPLGGRVTSLDLSMDGLELLSSS----------RDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred cceEEEeccC----CceeeE--eecCcceeeEeeccCCeEEeeec----------CCCceeeeecccccEEEEeeccccc
Confidence 3577777644 333332 46666899999999999987753 2256778898888887775544322
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.......+.|||||.+++..+.+ +.||+|++
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~d-------------------------------------------------gsv~iW~v 416 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSAD-------------------------------------------------GSVYIWSV 416 (459)
T ss_pred cccccceeEECCCCceeeeccCC-------------------------------------------------CcEEEEEc
Confidence 11125678999999999987543 57899999
Q ss_pred -CCCceecCCC----ceEEeeeeCCCCceEEEEE
Q 004475 165 -DGTAKDFGTP----AVYTAVEPSPDQKYVLITS 193 (751)
Q Consensus 165 -~G~~~~lt~~----~~~~~~~~SpDG~~i~~~~ 193 (751)
+|+...+... ..+..++|+|-|+.++-..
T Consensus 417 ~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 417 FTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 7765544322 3688999999999987654
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0029 Score=59.03 Aligned_cols=152 Identities=14% Similarity=0.070 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCC-c------cCc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLT-P------FGF 645 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~-~------~~~ 645 (751)
..+....+..++.+|.++..+ .++-++||||||.....++..+.+ .+...|++.+.++.... + ...
T Consensus 115 ~~~~s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~ 192 (288)
T COG4814 115 GLDQSKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLK 192 (288)
T ss_pred hhhHHHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeec
Confidence 344477788999999998765 578899999999999999887632 36778888877761111 1 000
Q ss_pred ccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCC------CCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 004475 646 QTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD------DKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 717 (751)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D------~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 717 (751)
... ...-.....|+..... .+ .-.+-+|+|.|+.| ..|| ...+...+..+...++.+.-.+++| +.|
T Consensus 193 ~~~-~~~~t~y~~y~~~n~k-~v-~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 193 DGP-GLIKTPYYDYIAKNYK-KV-SPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred cCc-cccCcHHHHHHHhcce-eC-CCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 000 0000000111111100 00 11356999999764 5677 8888888888888777666666765 567
Q ss_pred cCCccccHHHHHHHHHHHHHH
Q 004475 718 VYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 718 ~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.-. .+...+...+..||-+
T Consensus 268 s~l--hen~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL--HENPTVAKYVKNFLWE 286 (288)
T ss_pred hcc--CCChhHHHHHHHHhhc
Confidence 643 2233566777777753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.018 Score=58.13 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=39.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+.||||++||+- .....|.|++.++.+.++.+.+... .+.+++|--.-..|+..
T Consensus 204 eil~~avS~Dgkylatg----------g~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----------GRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEec----------CCCceEEEecCcccchhhccccccc----ceeeeeeecCccceeee
Confidence 45678899999999993 3345666889999998888655432 35566664333445444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.003 Score=62.81 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=81.9
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCC---cEEEEee
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS---TLLIFTI 105 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg---~~l~~~~ 105 (751)
+.++....|||||+.||++.. ....|+++++|- ...+|.... +..+..+.|+-|+ ...++..
T Consensus 186 ~~eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~ 251 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAAS 251 (398)
T ss_pred cCccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEe
Confidence 346889999999999999752 255555666763 334442222 1135688898776 3333332
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCC
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~Sp 184 (751)
....+.. .. ....+|..+--+..++.... ..+..++.|+
T Consensus 252 ~~~~~~v--------------------~~--------------------~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 252 QFPGGGV--------------------RL--------------------CDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred cCCCCce--------------------eE--------------------EEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 1110000 00 00122222211133444434 6889999999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
|||++++..+++ ++-+++...-+..++.... +..-+.+++|+||.++
T Consensus 292 dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~a-----------H~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 292 DGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKEA-----------HLGFVTGLTFSPDSRY 338 (398)
T ss_pred CCcEEEEeccCC-------------cEEEEEeceeeeeEeehhh-----------heeeeeeEEEcCCcCc
Confidence 999999987653 4556666544333322211 1112457899999988
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.067 Score=57.42 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=149.0
Q ss_pred ceeEEeecCCCCCCCCccc-ccCCCCccccc-ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKIN-FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
-||.++|..+ .+..+ |.+..+ .+. .=-|-|+-+.+|.. .+.+.|.+++..+....-+-.+..
T Consensus 303 Qnl~l~d~~~----l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVA----------TNs~~lr~y~~~~~~c~ii~GH~e 366 (775)
T KOG0319|consen 303 QNLFLYDEDE----LTIVKQIVGYND--EILDMKFLGPEESHLAVA----------TNSPELRLYTLPTSYCQIIPGHTE 366 (775)
T ss_pred ceEEEEEccc----cEEehhhcCCch--hheeeeecCCccceEEEE----------eCCCceEEEecCCCceEEEeCchh
Confidence 4778887777 55543 433222 243 33577888888886 445677777888877775522222
Q ss_pred ccccceeeeeE-EecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 ICLNAVFGSFV-WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~~~~~~~~~~-wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+.++. |+ +|-.|+..+.+ ....||+
T Consensus 367 -----~vlSL~~~~-~g~llat~sKD-----------------------------------------------~svilWr 393 (775)
T KOG0319|consen 367 -----AVLSLDVWS-SGDLLATGSKD-----------------------------------------------KSVILWR 393 (775)
T ss_pred -----heeeeeecc-cCcEEEEecCC-----------------------------------------------ceEEEEE
Confidence 244444 53 56555555432 1246777
Q ss_pred EcC-CCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSL-DGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~-~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++- .++ ..+.+.+ ..+..++.+.-|-.++++... ...+-+|++...+...- ...+.. -..
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~------------D~tlK~W~l~~s~~~~~-~~~~~~--~~t 458 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ------------DCTLKLWDLPKSKETAF-PIVLTC--RYT 458 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecC------------CceEEEecCCCcccccc-cceehh--hHH
Confidence 743 221 2233334 667788888888776665433 34566777764221110 000000 000
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
.......+.+++.+|+.+- |+-.+ .| ...-+++++ .......+..+...+. +.|||..+.++..
T Consensus 459 ~~aHdKdIN~Vaia~ndkL-iAT~S-qD-----------ktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKL-IATGS-QD-----------KTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred HHhhcccccceEecCCCce-EEecc-cc-----------cceeeeccc--CceEEEEeeCCccceEEEEeccccceeEec
Confidence 1223345678999999885 44433 21 223333332 1333445555555666 9999999988876
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCce
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 395 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (751)
+. +..-.||.++ + .+-...+++....+.- ..|-.+|+.|+....++ -
T Consensus 524 Sg--D~TvKIW~is--~--fSClkT~eGH~~aVlr------a~F~~~~~qliS~~adG---------------------l 570 (775)
T KOG0319|consen 524 SG--DKTVKIWSIS--T--FSCLKTFEGHTSAVLR------ASFIRNGKQLISAGADG---------------------L 570 (775)
T ss_pred cC--CceEEEEEec--c--ceeeeeecCccceeEe------eeeeeCCcEEEeccCCC---------------------c
Confidence 63 2234566554 4 2222333332222221 45778999988877432 6
Q ss_pred eEEEecCCCceeE
Q 004475 396 LDLFDINTGSKER 408 (751)
Q Consensus 396 l~~~d~~~g~~~~ 408 (751)
|.+|+.++++-.+
T Consensus 571 iKlWnikt~eC~~ 583 (775)
T KOG0319|consen 571 IKLWNIKTNECEM 583 (775)
T ss_pred EEEEeccchhhhh
Confidence 8889999887643
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00029 Score=71.63 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=61.2
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh---CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~ 587 (751)
..|++|++||-. +.. ....|.......+.. ..+.|+.+|....... .............+.+..
T Consensus 70 ~~pt~iiiHGw~-----------~~~-~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~-~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 70 SKPTVIIIHGWT-----------GSG-SSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN-NYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp TSEEEEEE--TT------------TT--TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS--HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCcC-----------Ccc-cchhHHHHHHHHHHhhccCCceEEEEcchhhccc-cccchhhhHHHHHHHHHH
Confidence 379999999941 111 011222233333444 4899998666211110 000000112233456667
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~ 635 (751)
.+++|.....++.++|.|+|||+||++|..++..... ++..+..+.|.
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 7777775556788999999999999999999887755 68888888775
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.19 Score=51.03 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=89.2
Q ss_pred eEEEEEcCCC-Cceec--C--CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eeeeccCCC
Q 004475 157 AQLVLGSLDG-TAKDF--G--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~l--t--~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~ 229 (751)
+.|.++|+.+ .-..+ + +...+....++.+...+++..+-. .+.+||+.++. ...+.-+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh-- 321 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLH-- 321 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhh--
Confidence 4677777754 22212 1 125667888998888888764331 34567765432 2222111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEe
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWC 306 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~s 306 (751)
..-++.++++|-..++++-++ .+..+.+||+-...+...-.|.. +...+. +.||
T Consensus 322 -----------~kKI~sv~~NP~~p~~laT~s------------~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 322 -----------KKKITSVALNPVCPWFLATAS------------LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred -----------hcccceeecCCCCchheeecc------------cCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 123568899999998444332 22344455542221222112332 334455 8899
Q ss_pred cCCceEEEeeeecccceeEEEec-CCCCCCccee-eeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVC-PGSKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|+|..|+.... ....+||-.. +... ..+.. +........|..+.. -.|.||-..|+...
T Consensus 379 Ps~gtl~TT~~--D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fK--A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 379 PSGGTLLTTCQ--DNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFK--AAWDPDYNLIVVGR 439 (498)
T ss_pred CCCCceEeecc--CCceEEeeccccccc-CCccceeeccCcccccccchh--heeCCCccEEEEec
Confidence 99999776552 2234555542 1111 12222 333333334444444 44999887777665
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.011 Score=63.67 Aligned_cols=202 Identities=12% Similarity=0.037 Sum_probs=104.4
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC-CccC-Ccc-C-----CCceeeeecCCCc
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP-VCYN-SVR-E-----GMRSISWRADKPS 255 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~-~~~-~-----~~~~~~~spdG~~ 255 (751)
-|||+|++.... +.++-+++++.=+..++...|-....- .++. ..+ . +...+=++|||+.
T Consensus 139 ydGr~~findk~------------n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~ 206 (635)
T PRK02888 139 YDGRYLFINDKA------------NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD 206 (635)
T ss_pred cceeEEEEecCC------------CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE
Confidence 489999886433 345667777654444444444222210 0111 111 1 1234566788876
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
+.-.+ ..++.+..+|.+ ..+...-....+... ..++|||++++.++-.......+-.++....
T Consensus 207 -l~~~~-----------ey~~~vSvID~e---tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~- 270 (635)
T PRK02888 207 -LDDPK-----------KYRSLFTAVDAE---TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER- 270 (635)
T ss_pred -eeccc-----------ceeEEEEEEECc---cceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC-
Confidence 32211 134567777764 222111112233445 7899999998776522222345555555332
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC----C-ceeEE
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT----G-SKERI 409 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~----g-~~~~l 409 (751)
.....++.... -.+.+||+...+.. .++.++|..+ + +....
T Consensus 271 -d~~vvfni~~i----------ea~vkdGK~~~V~g-----------------------n~V~VID~~t~~~~~~~v~~y 316 (635)
T PRK02888 271 -DWVVVFNIARI----------EEAVKAGKFKTIGG-----------------------SKVPVVDGRKAANAGSALTRY 316 (635)
T ss_pred -ceEEEEchHHH----------HHhhhCCCEEEECC-----------------------CEEEEEECCccccCCcceEEE
Confidence 11122211110 23677888766532 1567778776 2 22222
Q ss_pred eeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 410 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
.... ..++.+++||||++++.+... .+.+.++|+...+
T Consensus 317 IPVG------------KsPHGV~vSPDGkylyVankl---S~tVSVIDv~k~k 354 (635)
T PRK02888 317 VPVP------------KNPHGVNTSPDGKYFIANGKL---SPTVTVIDVRKLD 354 (635)
T ss_pred EECC------------CCccceEECCCCCEEEEeCCC---CCcEEEEEChhhh
Confidence 2221 224557999999999887532 3458888886643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.066 Score=58.64 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC--CCee--eccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~--g~~~--~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
..-.++||.++++|-. +..++|.++.--+ ++.. ++.+... ..+..++||+||.+|+-..
T Consensus 208 ~t~~~~spn~~~~Aa~----------d~dGrI~vw~d~~~~~~~~t~t~lHWH~----~~V~~L~fS~~G~~LlSGG--- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAG----------DSDGRILVWRDFGSSDDSETCTLLHWHH----DEVNSLSFSSDGAYLLSGG--- 270 (792)
T ss_pred ceeEEeccccceEEEe----------ccCCcEEEEeccccccccccceEEEecc----cccceeEEecCCceEeecc---
Confidence 3558999999999985 2235566666433 2211 1112221 1367899999999988651
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG 186 (751)
....|.++.+ +++.+-|..- ..+..+.+||||
T Consensus 271 ----------------------------------------------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds 304 (792)
T KOG1963|consen 271 ----------------------------------------------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS 304 (792)
T ss_pred ----------------------------------------------cceEEEEEeecCCCcccccccCCeeEEEEEcCCC
Confidence 1156777777 6664444333 667899999999
Q ss_pred ceEEEEEecC
Q 004475 187 KYVLITSMHR 196 (751)
Q Consensus 187 ~~i~~~~~~~ 196 (751)
....+...++
T Consensus 305 ~~~sl~~~DN 314 (792)
T KOG1963|consen 305 DLYSLVLEDN 314 (792)
T ss_pred CeEEEEecCc
Confidence 8777665544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=56.62 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=83.7
Q ss_pred eEEEEEcC-CC----CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCC
Q 004475 157 AQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~-~G----~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~ 229 (751)
..|+++.. +| ..++++.+ ..+.++.|||..+-++++..- ...|.+||...+.. ..+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~--- 298 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVST--- 298 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEe---
Confidence 35666655 55 34566666 788899999999988876543 34688999976522 12211
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-EeEeeceeEE-EEEec
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFS-VSWCD 307 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~-~~~sp 307 (751)
.+....+.-++|+.+-.. |+.-. ..+.+.++|+.....+.+. ....+...+. +.|+|
T Consensus 299 --------kAh~sDVNVISWnr~~~l-LasG~------------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 299 --------KAHNSDVNVISWNRREPL-LASGG------------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred --------eccCCceeeEEccCCcce-eeecC------------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 122223456788877662 44421 3367778887544444433 3445566777 99998
Q ss_pred CCceEEEeeeecccceeEEEecCCC
Q 004475 308 DSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
.-..++..+. ...+..||-+.++-
T Consensus 358 ~e~s~iaasg-~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 358 HEDSVIAASG-EDNQITIWDLSVEA 381 (440)
T ss_pred ccCceEEecc-CCCcEEEEEeeccC
Confidence 8766544442 23345677665544
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0025 Score=60.06 Aligned_cols=190 Identities=16% Similarity=0.165 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 574 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~ 574 (751)
.+|+..|++ |. .||.+-||.+. ...|.-.+ ..+...|+++||+|++.+|.. .+.+
T Consensus 7 ~~wvl~P~~-------P~-gvihFiGGaf~--------ga~P~itY---r~lLe~La~~Gy~ViAtPy~~------tfDH 61 (250)
T PF07082_consen 7 GSWVLIPPR-------PK-GVIHFIGGAFV--------GAAPQITY---RYLLERLADRGYAVIATPYVV------TFDH 61 (250)
T ss_pred CcEEEeCCC-------CC-EEEEEcCccee--------ccCcHHHH---HHHHHHHHhCCcEEEEEecCC------CCcH
Confidence 346667754 22 56666676432 22333332 245668889999999955521 1222
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC--CCCCCCccC--cccc
Q 004475 575 DRFVEQLVSSAEAAVEEVVRRGVADP--SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS--YNKTLTPFG--FQTE 648 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~~~id~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~--~d~~~~~~~--~~~~ 648 (751)
........+....+++.|.++..++. -+++-+|||+|+-+-+.+....+..-++-++++-. ......+.. +...
T Consensus 62 ~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 62 QAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEecCChHHHhhCchHhhhccc
Confidence 33344556777788888877654443 36888999999999998887764333444444321 000001110 0000
Q ss_pred -cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC-CCcEEEEEeCCCCCc
Q 004475 649 -FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH-GALSRLVLLPFEHHV 718 (751)
Q Consensus 649 -~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~H~ 718 (751)
...+.+.++.-... ++.--.+ .-.|+|.=.+|. .+++..+.+.|+.. ...++....|| +|.
T Consensus 142 l~~EF~PsP~ET~~l--i~~~Y~~-~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 142 LRLEFTPSPEETRRL--IRESYQV-RRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cccCccCCHHHHHHH--HHHhcCC-ccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 00111111111100 0000012 235666666666 46677788888754 23466777875 685
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.034 Score=54.69 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=79.3
Q ss_pred eEEEEEcCCC-C----ceec-CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 157 AQLVLGSLDG-T----AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~----~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
.+||++|+.- + +... .++.++..++.++.+-+|+|-... -..++++||+.+-+....
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-----------t~GdV~l~d~~nl~~v~~------ 168 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-----------TSGDVVLFDTINLQPVNT------ 168 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-----------CCceEEEEEcccceeeeE------
Confidence 4799999844 2 1222 122567777788888899996332 157899999876543211
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccc-ceeeccCCCCCCCCceEeEee--ceeEE-EEEe
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD-IIYTQPAEPAEGEKPEILHKL--DLRFS-VSWC 306 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~s 306 (751)
+......+-.++|||||.. |+-++ .++ .|.++.+. +|....+...+ ...+. ++||
T Consensus 169 ------I~aH~~~lAalafs~~G~l-lATAS------------eKGTVIRVf~v~--~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 169 ------INAHKGPLAALAFSPDGTL-LATAS------------EKGTVIRVFSVP--EGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred ------EEecCCceeEEEECCCCCE-EEEec------------cCceEEEEEEcC--CccEeeeeeCCceeeEEEEEEEC
Confidence 1222333558999999997 66654 233 34444442 13333333322 22344 8999
Q ss_pred cCCceEEEeeeecccceeEEEecC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
||++.|..+++. ..-+||.++.
T Consensus 228 ~ds~~L~~sS~T--eTVHiFKL~~ 249 (391)
T KOG2110|consen 228 PDSQFLAASSNT--ETVHIFKLEK 249 (391)
T ss_pred CCCCeEEEecCC--CeEEEEEecc
Confidence 999999887743 2345555543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.02 Score=60.84 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=49.2
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+..+...+.||+|..||-..+ +......-|++++..+-...+ | ..+.+ ++..++|||||++|+..+.+
T Consensus 524 HGyEv~~l~~s~~gnliASaCK-----S~~~ehAvI~lw~t~~W~~~~~L---~~HsL--TVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACK-----SSLKEHAVIRLWNTANWLQVQEL---EGHSL--TVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred CceeEEEEEecCCCCEEeehhh-----hCCccceEEEEEeccchhhhhee---cccce--EEEEEEECCCCcEEEEeecC
Confidence 3446888999999999999774 222445788999976644333 4 33322 47899999999999988654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=57.05 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
.++||.+++++.+.. ++.-.+|.---.......-++..-....+.. ++||+||.+|+....+
T Consensus 211 ~~~spn~~~~Aa~d~--dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~------L~fS~~G~~LlSGG~E---------- 272 (792)
T KOG1963|consen 211 VALSPNERYLAAGDS--DGRILVWRDFGSSDDSETCTLLHWHHDEVNS------LSFSSDGAYLLSGGRE---------- 272 (792)
T ss_pred EEeccccceEEEecc--CCcEEEEeccccccccccceEEEecccccce------eEEecCCceEeecccc----------
Confidence 789999998876552 2334444422211212222333333333333 8899999999877643
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
..|.+|.+++++.+-|...... .. .+.+|||+.......
T Consensus 273 -----------~VLv~Wq~~T~~kqfLPRLgs~-----I~-------~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 273 -----------GVLVLWQLETGKKQFLPRLGSP-----IL-------HIVVSPDSDLYSLVL 311 (792)
T ss_pred -----------eEEEEEeecCCCcccccccCCe-----eE-------EEEEcCCCCeEEEEe
Confidence 3789999999886555443321 11 146778887655543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.016 Score=53.88 Aligned_cols=232 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred cceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 34 NFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 34 ~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..|||= -.+||...... -.-.+.+.|+|.++.+++ .+.+.+ .....++-.++||+.-+.++++...
T Consensus 12 ysvqfSPf~~nrLavAt~q~---yGl~G~G~L~ile~~~~~gi~e~~s---~d~~D~LfdV~Wse~~e~~~~~a~G---- 81 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQH---YGLAGNGRLFILEVTDPKGIQECQS---YDTEDGLFDVAWSENHENQVIAASG---- 81 (311)
T ss_pred ceeEecccccchhheeehhh---cccccCceEEEEecCCCCCeEEEEe---eecccceeEeeecCCCcceEEEEec----
Confidence 46778882 12344332100 011467899999996433 333322 1222246789999987766665321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CCCceecCCC-ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
.+.|-++|+ ++.++.+.++ ..+.++.|++--+
T Consensus 82 --------------------------------------------DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r 117 (311)
T KOG0277|consen 82 --------------------------------------------DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR 117 (311)
T ss_pred --------------------------------------------CceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence 134555555 2344455556 7889999999888
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++++++. +...|-+|+..-++ ++. |...+.-+....|||--..+++.++
T Consensus 118 ~~~ltsS------------WD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas~S----- 167 (311)
T KOG0277|consen 118 RIFLTSS------------WDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFASAS----- 167 (311)
T ss_pred eeEEeec------------cCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEEcc-----
Confidence 8888753 24567788887443 222 2223333567899998877455544
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..+.+.++|+. . .++...|...+..+. .-|+.-...++++... ...|...|+..- . +.+.....
T Consensus 168 -------gd~~l~lwdvr-~-~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~-r--~pl~eL~g 232 (311)
T KOG0277|consen 168 -------GDGTLRLWDVR-S-PGKFMSIEAHNSEILCCDWSKYNHNVLATGGV---DNLVRGWDIRNL-R--TPLFELNG 232 (311)
T ss_pred -------CCceEEEEEec-C-CCceeEEEeccceeEeecccccCCcEEEecCC---CceEEEEehhhc-c--ccceeecC
Confidence 33566777764 2 234444655555555 7898877777776632 234555555442 1 22222221
Q ss_pred c--cccCCCCCCCeeeCCCCCEEEEee
Q 004475 346 E--NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 346 ~--~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+ .+.. +.|||-...|+..+
T Consensus 233 h~~AVRk------vk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 233 HGLAVRK------VKFSPHHASLLASA 253 (311)
T ss_pred CceEEEE------EecCcchhhHhhhc
Confidence 1 1222 67898877666555
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=61.02 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=90.3
Q ss_pred ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 170 DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 170 ~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
.|.....+..+.|..+|.||+....... +..+.+..+.....+ .++. -....+..+.|
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~----------~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~F 574 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSG----------NKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKF 574 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCC----------cceEEEEeccccccc----Cchh--------hcCCceeEEEe
Confidence 3444477889999999999999865432 345677776543222 1211 11122347799
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
+|-..+ ++++. +..+.++++.. ....+.+..+..-++ ++.+|.|.-|+.++. ...+.-+
T Consensus 575 HPs~p~-lfVaT-------------q~~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~Wf 634 (733)
T KOG0650|consen 575 HPSKPY-LFVAT-------------QRSVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWF 634 (733)
T ss_pred cCCCce-EEEEe-------------ccceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEE
Confidence 999998 44433 24566777631 223455556666677 899999999887662 2344445
Q ss_pred cCCCCCCccee-e--eecccccccCCCCCCCe-eeCCCCCEEEEee
Q 004475 329 CPGSKDVAPRV-L--FDRVFENVYSDPGSPMM-TRTSTGTNVIAKI 370 (751)
Q Consensus 329 ~~~~~~~~~~~-l--~~~~~~~~~~~~~~~~~-~~spDG~~l~~~~ 370 (751)
|++-. ..+-+ | .......+..++-.|.+ +-|+||..++|-.
T Consensus 635 Dldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 635 DLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 66543 22221 2 11122222222223323 3578898888866
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.004 Score=66.86 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=78.6
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc-CCCCccCCCC---chHHHHHHhCCeEEEEcCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGMT---PTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
+..+..|++...+ ++ ...|+||+++|||..+.- .+.+. .+|-....-. ......+...+..++. |.+-..
T Consensus 60 ~~~lFyw~~~s~~-~~---~~~Pl~lwlnGGPG~ss~-~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~i-DqP~G~ 133 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GN---PEAPVLLWMTGGPGCSSM-FALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYV-DQPAGV 133 (462)
T ss_pred CceEEEEEEEcCC-CC---CCCCEEEEECCCCcHHHH-HhhhccCCCeEEeCCCCceeECCcccccccCeEEE-eCCCCc
Confidence 4567777776543 22 237999999999755431 11111 1111111100 0011123334444443 443344
Q ss_pred CCCCCCCC--chhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC----------CCceeEEEEcc
Q 004475 567 GEGDKLPN--DRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHA----------PHLFCCGIARS 633 (751)
Q Consensus 567 g~g~~~~~--~~~~~~~~~d~~~~v~~l~~-~~~id~~~i~l~G~S~GG~~a~~~a~~~----------p~~~~~~v~~~ 633 (751)
|++..... ........+|+.++++...+ .+.....++.|+|+||||..+..+|.+- +-.++++++..
T Consensus 134 G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 134 GFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred CcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 55433221 22335667888888865544 3445567999999999999998887542 01378888888
Q ss_pred CCCC
Q 004475 634 GSYN 637 (751)
Q Consensus 634 ~~~d 637 (751)
|+.+
T Consensus 214 g~~d 217 (462)
T PTZ00472 214 GLTD 217 (462)
T ss_pred cccC
Confidence 8765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.038 Score=51.22 Aligned_cols=243 Identities=15% Similarity=0.156 Sum_probs=124.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-cccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
..-|.+..+.. .|+...+..|.+.. .+...+|.. -|..||-. .+..+|.|+.-.+|+-.++...
T Consensus 32 D~tVkIf~v~~---n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----------sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 32 DGTVKIFEVRN---NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----------SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred CccEEEEEEcC---CCCceeeeEecCCCCCeeEEeecccccCcEeeEe----------ecCceEEEEecCCCchhhhhhh
Confidence 34567777765 23334444444432 567778877 78888886 4556777778777765555333
Q ss_pred CCccccceeeeeEEecCC--cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 81 PDICLNAVFGSFVWVNNS--TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
..+ ..+++.++|.|.+ -.|+..+.++ .-.
T Consensus 99 ~~h--~~SVNsV~wapheygl~LacasSDG-----------------------------------------------~vs 129 (299)
T KOG1332|consen 99 AAH--SASVNSVAWAPHEYGLLLACASSDG-----------------------------------------------KVS 129 (299)
T ss_pred hhh--cccceeecccccccceEEEEeeCCC-----------------------------------------------cEE
Confidence 222 3357889999874 4445443321 124
Q ss_pred EEEEcCCC--CceecCC-C-ceEEeeeeCCC---CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 159 LVLGSLDG--TAKDFGT-P-AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 159 l~~~~~~G--~~~~lt~-~-~~~~~~~~SpD---G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
|..++-+| ...++.. + .++.+++|+|- |..+ -.... ...+..-.+.-.+.+-+|..+.++-..
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~-~~~~~-~~~krlvSgGcDn~VkiW~~~~~~w~~-------- 199 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV-DQGPA-AKVKRLVSGGCDNLVKIWKFDSDSWKL-------- 199 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCcccc-ccCcc-cccceeeccCCccceeeeecCCcchhh--------
Confidence 55555554 3334432 3 66778999987 5211 00000 000000111122344556555431110
Q ss_pred CCCCccCCccCCCceeeeecCCCceE-EEEEeccCCCCccccCcccceeeccCC-CCCCCCceEeEeeceeEE-EEEecC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTL-YWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
...+.....-+|.++|.|.-.... ..++. ...+.++++..+ ..+.-+.+.+...+..+- ++||..
T Consensus 200 --e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~----------SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 200 --ERTLEGHKDWVRDVAWAPSVGLPKSTIASC----------SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred --hhhhhhcchhhhhhhhccccCCCceeeEEe----------cCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 011222334467889998753211 22221 122344444432 111123344555555566 999999
Q ss_pred CceEEEeeeecccceeEEEecCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|..|+.+. .+..-.||.=+.++
T Consensus 268 Gn~LaVs~--GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 268 GNILAVSG--GDNKVTLWKENVDG 289 (299)
T ss_pred ccEEEEec--CCcEEEEEEeCCCC
Confidence 99988765 22334677766665
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=68.35 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=60.6
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+...|.+.||.+- .+..|.|-...........++++.+.++.+.+... ..++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~~----~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKEG----KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCccC----CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 45667889999762 23444443333222234557788888888776532 3689999999999999999988876
Q ss_pred c----eeEEEEccCCCC
Q 004475 625 L----FCCGIARSGSYN 637 (751)
Q Consensus 625 ~----~~~~v~~~~~~d 637 (751)
. ++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3 677888887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.098 Score=59.65 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.9
Q ss_pred eEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEec
Q 004475 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~ 195 (751)
+.|.++|. +.....++.- .++..++||||++.+++....
T Consensus 90 G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 90 GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC
Confidence 46677777 4555555544 788899999999999987654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.074 Score=53.72 Aligned_cols=154 Identities=10% Similarity=0.091 Sum_probs=89.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
..+.+++|.|-.+.++-+..+ .+.|.+||+.+. +.+.. .......+..++|+|=
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~d------------d~~L~iwD~R~~~~~~~~~------------~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGD------------DGKLMIWDTRSNTSKPSHS------------VKAHSAEVNCVAFNPF 283 (422)
T ss_pred cceehhhccccchhhheeecC------------CCeEEEEEcCCCCCCCccc------------ccccCCceeEEEeCCC
Confidence 556789999988887665444 457889999853 11111 1122233568999999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
+..+|+-.+ ..+.|.++|+-..+ .....+......+. +.|||....++.++. ..+...+|-+.--
T Consensus 284 ~~~ilAT~S------------~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~i 349 (422)
T KOG0264|consen 284 NEFILATGS------------ADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRI 349 (422)
T ss_pred CCceEEecc------------CCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccc
Confidence 988444433 23578888874222 23444445566666 999999998876663 2233345544333
Q ss_pred CCC--------CcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 332 SKD--------VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 332 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.+ +.+..|+.+..+.. ...-++|.|.--+++...
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~----kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTA----KVSDFSWNPNEPWTIASV 392 (422)
T ss_pred ccccChhhhccCCcceeEEecCccc----ccccccCCCCCCeEEEEe
Confidence 321 11223333322210 011277899988887776
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.088 Score=53.31 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=135.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+|.+||+.+++++.....+ ..+.+..+....|||-..--.|.+ .+.+.|..+|++++..+.+......
T Consensus 210 G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ss---------SyDGtiR~~D~~~~i~e~v~s~~~d- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSS---------SYDGTIRLQDFEGNISEEVLSLDTD- 278 (498)
T ss_pred CcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeee---------ccCceeeeeeecchhhHHHhhcCcc-
Confidence 47899999753344433333 246667899999999887766654 5668999999998876655443211
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+..+..+.++.+...++|...- +.-+++....
T Consensus 279 -~~~fs~~d~~~e~~~vl~~~~~-----------------------------------------------G~f~~iD~R~ 310 (498)
T KOG4328|consen 279 -NIWFSSLDFSAESRSVLFGDNV-----------------------------------------------GNFNVIDLRT 310 (498)
T ss_pred -ceeeeeccccCCCccEEEeecc-----------------------------------------------cceEEEEeec
Confidence 2246677888888888877221 1124444444
Q ss_pred CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eee-eeccCCCCCCCCCccCC
Q 004475 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVR-ELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 ~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~-~l~~~~~~~~~~~~~~~ 239 (751)
.| +...+.-+ .-+..+++.|--.+++.++.. ...+.+||+..- +.. .|+..+
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~----------- 367 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLP----------- 367 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceeccc-----------
Confidence 55 34444444 567789999998887776544 234668887522 111 222221
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCC--CCCCceEeEeec---eeEE---EEEecCCce
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPA--EGEKPEILHKLD---LRFS---VSWCDDSLA 311 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~---~~~~---~~~spdg~~ 311 (751)
....+.+..|||+|-. |+-+. ....|.++|..-. .......|.... ..+. ..|.||-..
T Consensus 368 HrrsV~sAyFSPs~gt-l~TT~------------~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l 434 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGT-LLTTC------------QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNL 434 (498)
T ss_pred ccceeeeeEEcCCCCc-eEeec------------cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccE
Confidence 2234557899999988 55543 2345666665100 011122222211 1122 789998887
Q ss_pred EEEeeeecccceeEEEecCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+...- ...|=+++..++
T Consensus 435 i~vg~~----~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 435 IVVGRY----PRPIDVFDGNGG 452 (498)
T ss_pred EEEecc----CcceeEEcCCCC
Confidence 766542 234666777664
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.15 Score=48.66 Aligned_cols=196 Identities=16% Similarity=0.123 Sum_probs=109.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-----eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-----~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
++...+=||-.++|.-+...+..+...-....||.++-+-+. ...+...+. ...+.+..+.|-|++..|+....
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCeeEEecc
Confidence 577788889888887776532111211244677777655444 222222221 11123567899999999987632
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-C-ceecCCC------ceE
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T-AKDFGTP------AVY 177 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~-~~~lt~~------~~~ 177 (751)
..|.++++ .+ + ...+... ..+
T Consensus 144 --------------------------------------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 144 --------------------------------------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred --------------------------------------------------CceEEEEcccCcchheeeccccccccccee
Confidence 35555666 33 2 1222111 345
Q ss_pred EeeeeCC--CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 178 TAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 178 ~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
.+-+||| ||..++.+... .++.||+.+-.. ..... .+...-+|.+.|+|+-.+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~--~~sI~---------dAHgq~vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKK--NNSIE---------DAHGQRVRDLDFNPNKQH 228 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhh--hcchh---------hhhcceeeeccCCCCceE
Confidence 6789999 99999887533 577888874321 11111 112223678899999998
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
.|+-+. +.+.+.++|.- .+....+.+.....-+- +.|-|--..|+.+.
T Consensus 229 ~lvt~g------------DdgyvriWD~R-~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 229 ILVTCG------------DDGYVRIWDTR-KTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEEEcC------------CCccEEEEecc-CCCccccccCCCceEEEEEEecCccceEEEec
Confidence 333322 33577788873 33333344443333333 66667666665544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.059 Score=54.40 Aligned_cols=215 Identities=10% Similarity=0.114 Sum_probs=117.3
Q ss_pred EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
.+++|++.-+--+.+... ...+.+||+...... .+.. -..+......+..++|+|--..
T Consensus 181 ~glsWn~~~~g~Lls~~~------------d~~i~lwdi~~~~~~~~~~~p-------~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSD------------DHTICLWDINAESKEDKVVDP-------KTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred cccccccccceeEeeccC------------CCcEEEEeccccccCCccccc-------eEEeecCCcceehhhccccchh
Confidence 357898877665555433 346888988744321 1100 0122333334557899988877
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
++..+. ..+.|.++|+-..+...........+.+. ++|.|=+..|+.+. +...+|.+.|+..-
T Consensus 242 lF~sv~------------dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDlRnL- 305 (422)
T KOG0264|consen 242 LFGSVG------------DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDLRNL- 305 (422)
T ss_pred hheeec------------CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeechhc-
Confidence 333332 44688888874212222333445566777 99999988776554 22356777777653
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC-CceeE-Eeec
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-GSKER-IWES 412 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~ 412 (751)
..+...+......+.. +.|||+...|+..+ +...+|.+||+.. |+.+. ....
T Consensus 306 ~~~lh~~e~H~dev~~------V~WSPh~etvLASS--------------------g~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 306 NKPLHTFEGHEDEVFQ------VEWSPHNETVLASS--------------------GTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred ccCceeccCCCcceEE------EEeCCCCCceeEec--------------------ccCCcEEEEeccccccccChhhhc
Confidence 1111222222333333 88999998887776 2334677888763 22211 1111
Q ss_pred cchhhhhceeeeec----CCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 413 NREKYFETAVALVF----GQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 413 ~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
++. ..+....+ -...++|.|+-.+++++.+..+ ..+||.+.
T Consensus 360 dgp---pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 360 DGP---PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cCC---cceeEEecCcccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 110 00001111 1234789999999998876664 45666554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.044 Score=51.10 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=125.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|++.++.. + +..+......-.-.....+||+.-..++++. .+.+.|.++++ +-...+|....++.
T Consensus 38 G~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a---------~GDGSLrl~d~-~~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 38 GRLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAA---------SGDGSLRLFDL-TMPSKPIHKFKEHK 104 (311)
T ss_pred ceEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEE---------ecCceEEEecc-CCCCcchhHHHhhh
Confidence 4678888864 1 2222222211112478899999999998876 44566666663 33444554333332
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
- .+.++.|++--++++.++. .++. -.||..+.
T Consensus 105 ~--EV~Svdwn~~~r~~~ltsS-WD~T---------------------------------------------iKLW~~~r 136 (311)
T KOG0277|consen 105 R--EVYSVDWNTVRRRIFLTSS-WDGT---------------------------------------------IKLWDPNR 136 (311)
T ss_pred h--heEEeccccccceeEEeec-cCCc---------------------------------------------eEeecCCC
Confidence 1 3668889987666666642 1111 23444443
Q ss_pred CCCceecCCC-ceEEeeeeCCCC-ceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCCcc
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
...++....+ .-+....|||-- ..++..+.+ ..+.+||++. ++...+. ...
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i~-------------ah~ 190 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSIE-------------AHN 190 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEEE-------------ecc
Confidence 3345555545 567789999954 555544332 3566777752 2222221 122
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
.++..+.|+.-... ++++.. ..+.|+.+|+.... ....+|..+...+. +.|||-...|+.++..+
T Consensus 191 ~Eil~cdw~ky~~~-vl~Tg~-----------vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD- 256 (311)
T KOG0277|consen 191 SEILCCDWSKYNHN-VLATGG-----------VDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD- 256 (311)
T ss_pred ceeEeecccccCCc-EEEecC-----------CCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc-
Confidence 33557889988887 666542 22467777774111 12334444556677 99999988877666442
Q ss_pred cceeEEEec
Q 004475 321 SQTRTWLVC 329 (751)
Q Consensus 321 ~~~~l~~~~ 329 (751)
...+||...
T Consensus 257 mT~riw~~~ 265 (311)
T KOG0277|consen 257 MTVRIWDPE 265 (311)
T ss_pred ceEEecccc
Confidence 234566443
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.002 Score=60.91 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=40.2
Q ss_pred hHHHHHHhCCeE---EEEcCCCCCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 545 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 545 ~~~~~~~~~G~~---v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
.+...|.++||. |++..+ |.+........ ..+.+.++.+.|+.+++.-. . ||-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TG--a-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTG--A-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT-----EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHhhC--C-EEEEEEcCCcCHHHHHH
Confidence 567789999999 677444 22111010000 11234667777777776532 4 89999999999999888
Q ss_pred HHh
Q 004475 619 LAH 621 (751)
Q Consensus 619 a~~ 621 (751)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.11 Score=50.25 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=94.4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.+++|.||.+.|+...+. ...|+.++.+|+-.+++.- .+.. ..-++++.-+|.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l-~g~~-----------D~EgI~y~g~~~ 77 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPL-DGFG-----------DYEGITYLGNGR 77 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE--SS-S-----------SEEEEEE-STTE
T ss_pred CCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeC-CCCC-----------CceeEEEECCCE
Confidence 468899999999988877655 3468888988776665421 1110 111567776665
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCC-c---eEeE-----eeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-P---EILH-----KLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~l~-----~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
+ +..+ + .+..|+++.++..+... . +.+. ..+..+. ++|.|.++.|+...++.+ ..
T Consensus 78 ~--vl~~-E----------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P--~~ 142 (248)
T PF06977_consen 78 Y--VLSE-E----------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP--KR 142 (248)
T ss_dssp E--EEEE-T----------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS--EE
T ss_pred E--EEEE-c----------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC--hh
Confidence 3 3332 1 23567777774222111 1 1111 1233456 999999998887764433 46
Q ss_pred EEEecCCCCCCcceeeeecccc--cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFE--NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
||.++................. .... .....+++.|.-..|+..+. ....|..+|.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~S~l~~~p~t~~lliLS~--------------------es~~l~~~d~- 200 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFV-RDLSGLSYDPRTGHLLILSD--------------------ESRLLLELDR- 200 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--S-S---EEEEETTTTEEEEEET--------------------TTTEEEEE-T-
T ss_pred hEEEccccCccceeecccccccccccee-ccccceEEcCCCCeEEEEEC--------------------CCCeEEEECC-
Confidence 8888762210111111111111 0000 00111556666666666662 3447788886
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
.|+.......... ..........+..+++++||+-.+.+
T Consensus 201 ~G~~~~~~~L~~g--~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 201 QGRVVSSLSLDRG--FHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp T--EEEEEE-STT--GGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCEEEEEEeCCc--ccCcccccCCccEEEECCCCCEEEEc
Confidence 4555444443321 01111223345558999998644443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0037 Score=67.31 Aligned_cols=88 Identities=24% Similarity=0.141 Sum_probs=58.3
Q ss_pred HHHHHh-CCeEEEEcCCCCCCCCCCCCCC-------c--hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 004475 547 SLIFLA-RRFAVLAGPSIPIIGEGDKLPN-------D--RFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 547 ~~~~~~-~G~~v~~~~~~~~~g~g~~~~~-------~--~~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a 615 (751)
...+|+ .|-.++. ...+=+|.+.+. . ...++.++|+...+++++.+. ..+..+++++|.|+||.+|
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 334554 4666666 334445555321 1 125678999999999998653 3355699999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCC
Q 004475 616 AHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+++-.++|+.+.++++.++++.
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999988755
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0032 Score=67.96 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
-+...|.++|+.+.+..+...+.+. .+..+.|||||+||+..+.+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~n----ritd~~FS~DgrWlisasmD------------------------------- 597 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGN----RITDMTFSPDGRWLISASMD------------------------------- 597 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhcccc----ceeeeEeCCCCcEEEEeecC-------------------------------
Confidence 4558899999988776555444433 37789999999999988553
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
+.|.++|+ +|.. --+.-.....++.+||.|.+|+.+..+ ...||+|.-
T Consensus 598 ------------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd------------~~gIylWsN 647 (910)
T KOG1539|consen 598 ------------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD------------QNGIYLWSN 647 (910)
T ss_pred ------------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec------------CceEEEEEc
Confidence 57888888 7733 222222456689999999999988655 345788853
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.45 Score=52.63 Aligned_cols=227 Identities=10% Similarity=0.083 Sum_probs=125.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|+|---||..... ++.-+||-+..-+= ..+. .++ .+.++.+.|.|.+-..+.. ++
T Consensus 11 RvKglsFHP~rPwILtslH--------sG~IQlWDYRM~tl-i~rF---deH--dGpVRgv~FH~~qplFVSG-----GD 71 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLH--------SGVIQLWDYRMGTL-IDRF---DEH--DGPVRGVDFHPTQPLFVSG-----GD 71 (1202)
T ss_pred cccceecCCCCCEEEEeec--------CceeeeehhhhhhH-Hhhh---hcc--CCccceeeecCCCCeEEec-----CC
Confidence 4677899999999988654 56678887665321 1122 222 1247888999998643322 11
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC--CCceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
. ..|.+++.. .-.-+|..+ ..++...|.+.==+
T Consensus 72 D--------------------------------------------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 72 D--------------------------------------------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred c--------------------------------------------cEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 0 234444442 233344445 67788889988888
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+-.+++ +.|.+|+-.+... -.++. ...++-...|.|.... |+-++.
T Consensus 108 IlSASDD-------------QTIrIWNwqsr~~iavltG-------------HnHYVMcAqFhptEDl-IVSaSL----- 155 (1202)
T KOG0292|consen 108 ILSASDD-------------QTIRIWNWQSRKCIAVLTG-------------HNHYVMCAQFHPTEDL-IVSASL----- 155 (1202)
T ss_pred EEEccCC-------------CeEEEEeccCCceEEEEec-------------CceEEEeeccCCccce-EEEecc-----
Confidence 8776554 3577888765443 33332 3344556788887665 555542
Q ss_pred CccccCcccceeeccCCCC--------------------------CCCCceEe-EeeceeEE-EEEecCCceEEEeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPA--------------------------EGEKPEIL-HKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
...+.+||+... ++...+.+ ..++..+. .+|.|.--.|+.++ +
T Consensus 156 -------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~--D 226 (1202)
T KOG0292|consen 156 -------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA--D 226 (1202)
T ss_pred -------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC--C
Confidence 123333333210 01111222 22344455 67777666555544 3
Q ss_pred ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+.-.||+++... ...+..-.+..+.+.+ ..|.|.-..|+..+
T Consensus 227 DRqVKlWrmnetK--aWEvDtcrgH~nnVss------vlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK--AWEVDTCRGHYNNVSS------VLFHPHQDLILSNS 269 (1202)
T ss_pred cceeeEEEecccc--ceeehhhhcccCCcce------EEecCccceeEecC
Confidence 4556788887644 2333334444444433 55777666665555
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=56.50 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=88.4
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..+.|+|-...+|+.+. ....|+++|+-. +...+.+.- ..... ++|+| ..+.|.+.. ..
T Consensus 190 i~svkfNpvETsILas~~------------sDrsIvLyD~R~--~~Pl~KVi~-~mRTN~IswnP--eafnF~~a~--ED 250 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCA------------SDRSIVLYDLRQ--ASPLKKVIL-TMRTNTICWNP--EAFNFVAAN--ED 250 (433)
T ss_pred eeEEecCCCcchheeeec------------cCCceEEEeccc--CCccceeee-eccccceecCc--cccceeecc--cc
Confidence 447888888887444432 234688888741 222222222 22333 89999 445555532 34
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..||..|+..- ..+..+.......+.. +.|||-|+-++..+-+ ..|.++.+.
T Consensus 251 ~nlY~~DmR~l-~~p~~v~~dhvsAV~d------VdfsptG~EfvsgsyD---------------------ksIRIf~~~ 302 (433)
T KOG0268|consen 251 HNLYTYDMRNL-SRPLNVHKDHVSAVMD------VDFSPTGQEFVSGSYD---------------------KSIRIFPVN 302 (433)
T ss_pred ccceehhhhhh-cccchhhcccceeEEE------eccCCCcchhcccccc---------------------ceEEEeecC
Confidence 57999887654 3344444444444433 7799999998887733 367777877
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
.+.-+.+..... ..+|.. +.||-|++.++ +. +....-.+|...
T Consensus 303 ~~~SRdiYhtkR---Mq~V~~-------Vk~S~Dskyi~-SG-Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 303 HGHSRDIYHTKR---MQHVFC-------VKYSMDSKYII-SG-SDDGNVRLWKAK 345 (433)
T ss_pred CCcchhhhhHhh---hheeeE-------EEEeccccEEE-ec-CCCcceeeeecc
Confidence 665555543321 112222 47899997554 43 333344455554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.59 Score=49.24 Aligned_cols=270 Identities=10% Similarity=0.021 Sum_probs=145.3
Q ss_pred eEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~ 86 (751)
+-+++..+ .+...... .+.........|+|..++.+.. ....+...+.......+......
T Consensus 13 ~~v~~~~~----~~~~~~~~--~~~~~~~v~~~~~g~~~~v~~~---------~~~~~~~~~~~~n~~~~~~~~g~---- 73 (381)
T COG3391 13 VSVINTGT----NKVTAAIS--LGRGPGGVAVNPDGTQVYVANS---------GSNDVSVIDATSNTVTQSLSVGG---- 73 (381)
T ss_pred eEEEeecc----cEEEEEee--cCCCCceeEEcCccCEEEEEee---------cCceeeecccccceeeeeccCCC----
Confidence 44555544 44444432 2224567889999988877642 11256666554222222211110
Q ss_pred ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC
Q 004475 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG 166 (751)
Q Consensus 87 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 166 (751)
..-...+-+++|+.++..... ...+.++|...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~------------------------------------------------~~~v~vid~~~ 105 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGD------------------------------------------------SNTVSVIDTAT 105 (381)
T ss_pred ccccceeeCCCCCeEEEecCC------------------------------------------------CCeEEEEcCcc
Confidence 012355777888877765321 03566666422
Q ss_pred --CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCC
Q 004475 167 --TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (751)
Q Consensus 167 --~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (751)
....+.-......++++|||+.+++..... ....+.++|..+...... .+.. ...
T Consensus 106 ~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~----------~~~~vsvid~~t~~~~~~--~~vG-----------~~P 162 (381)
T COG3391 106 NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN----------GNNTVSVIDAATNKVTAT--IPVG-----------NTP 162 (381)
T ss_pred cceeeEeeeccCCceEEECCCCCEEEEEeccc----------CCceEEEEeCCCCeEEEE--EecC-----------CCc
Confidence 222222223456899999999999986531 245677888876654332 1100 012
Q ss_pred ceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE------eEeeceeEEEEEecCCceEEEeeee
Q 004475 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI------LHKLDLRFSVSWCDDSLALVNETWY 318 (751)
Q Consensus 245 ~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------l~~~~~~~~~~~spdg~~l~~~~~~ 318 (751)
..++++|+|+. ++.+.. ..+.|.+++.+ +..... +..........++|||+.++.....
T Consensus 163 ~~~a~~p~g~~-vyv~~~-----------~~~~v~vi~~~---~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 163 TGVAVDPDGNK-VYVTNS-----------DDNTVSVIDTS---GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred ceEEECCCCCe-EEEEec-----------CCCeEEEEeCC---CcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 37899999998 666541 23577777764 222221 1122222227899999987655432
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
.....+..++..++ .... ........ .......+|+|+.++..... ...+..
T Consensus 228 -~~~~~v~~id~~~~--~v~~-~~~~~~~~----~~~~v~~~p~g~~~yv~~~~--------------------~~~V~v 279 (381)
T COG3391 228 -SGSNNVLKIDTATG--NVTA-TDLPVGSG----APRGVAVDPAGKAAYVANSQ--------------------GGTVSV 279 (381)
T ss_pred -CCCceEEEEeCCCc--eEEE-eccccccC----CCCceeECCCCCEEEEEecC--------------------CCeEEE
Confidence 22357888888774 1111 11111110 01116789999988776521 236777
Q ss_pred EecCCCceeEE
Q 004475 399 FDINTGSKERI 409 (751)
Q Consensus 399 ~d~~~g~~~~l 409 (751)
+|..+......
T Consensus 280 id~~~~~v~~~ 290 (381)
T COG3391 280 IDGATDRVVKT 290 (381)
T ss_pred EeCCCCceeee
Confidence 77776655433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.044 Score=52.14 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=95.9
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCe--EEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
||..-++|||.++ -++-..=..+ ..+..-+|||=... |.-+. ....+|.+-|+++|.-.....
T Consensus 121 SFDhtlKVWDtnT----lQ~a~~F~me--~~VYshamSp~a~sHcLiA~g---------tr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT----LQEAVDFKME--GKVYSHAMSPMAMSHCLIAAG---------TRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred cccceEEEeeccc----ceeeEEeecC--ceeehhhcChhhhcceEEEEe---------cCCCcEEEEeccCCcceeeec
Confidence 6778899999998 5555433233 35777889987652 22222 445899999999998666555
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe-eeE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT-TAQ 158 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (751)
+... ++..+.|||..++|+++....... ++|+..+ .+-
T Consensus 186 GHr~----~vlaV~Wsp~~e~vLatgsaDg~i-------------------------------------rlWDiRrasgc 224 (397)
T KOG4283|consen 186 GHRD----GVLAVEWSPSSEWVLATGSADGAI-------------------------------------RLWDIRRASGC 224 (397)
T ss_pred cccC----ceEEEEeccCceeEEEecCCCceE-------------------------------------EEEEeecccce
Confidence 5433 478999999999999883321111 1222221 144
Q ss_pred EEEEcC-CCCceec--CC--C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee
Q 004475 159 LVLGSL-DGTAKDF--GT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (751)
Q Consensus 159 l~~~~~-~G~~~~l--t~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (751)
+.++|. .++.-++ ++ + +-+.+.+|+.||++++....+ ..+.+|+...++..
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGRNT 281 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCccc
Confidence 556666 4421111 22 2 667799999999999875433 35678888766543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.033 Score=60.04 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=99.2
Q ss_pred eEEEEEcCC--CCce---ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 157 AQLVLGSLD--GTAK---DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~--G~~~---~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
+.|.++|++ +.-+ -+.++ ..+..+.|++-.-.|+++... ...+-.||+..++....
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ------------Dg~vK~~DlR~~~S~~t------ 171 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ------------DGTVKCWDLRSKKSKST------ 171 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC------------CceEEEEeeeccccccc------
Confidence 466677773 3222 33445 778899999998888887543 34577899876554422
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg 309 (751)
+-..-+.+|.+.|+|--.. .++ +. ...+.|-++|+- ....-...++.+.+.+. ..|+|++
T Consensus 172 ------~~~nSESiRDV~fsp~~~~-~F~-s~----------~dsG~lqlWDlR-qp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 172 ------FRSNSESIRDVKFSPGYGN-KFA-SI----------HDSGYLQLWDLR-QPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred ------ccccchhhhceeeccCCCc-eEE-Ee----------cCCceEEEeecc-CchhHHHHhhcccCceEEEeecCCC
Confidence 1223456889999987654 233 22 234677777773 33344556777888888 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+|+... ++....||- ..++...+ .++-.....+.- +.|-|+-.+.+..+
T Consensus 233 ~~lATGG--RDK~vkiWd--~t~~~~~~-~~tInTiapv~r------VkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 233 EWLATGG--RDKMVKIWD--MTDSRAKP-KHTINTIAPVGR------VKWRPARSYHLATC 282 (839)
T ss_pred ceeeecC--CCccEEEEe--ccCCCccc-eeEEeecceeee------eeeccCccchhhhh
Confidence 9998765 233345554 44431221 222222222211 77999987655544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.23 Score=49.44 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=77.9
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC------CCceEeEeeceeEE-EEEecCCceEE
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG------EKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
...+-.+.|.|-....|+-.+ ....+.++.+ +..+ .-...|..+...+. +.|.|--.-++
T Consensus 81 t~~vLDi~w~PfnD~vIASgS------------eD~~v~vW~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGS------------EDTKVMVWQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred cccccccccCccCCceeecCC------------CCceEEEEEC-CCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 344568899998887333322 2235555555 2221 12345566677788 99999887776
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
+++ +..+.+.+.+..++ .....|. ....+++ ++|+.||..|+..+.++
T Consensus 148 lsa---g~Dn~v~iWnv~tg-eali~l~--hpd~i~S------~sfn~dGs~l~TtckDK-------------------- 195 (472)
T KOG0303|consen 148 LSA---GSDNTVSIWNVGTG-EALITLD--HPDMVYS------MSFNRDGSLLCTTCKDK-------------------- 195 (472)
T ss_pred hhc---cCCceEEEEeccCC-ceeeecC--CCCeEEE------EEeccCCceeeeecccc--------------------
Confidence 666 33467788888886 2222222 3444555 88999999999988553
Q ss_pred ceeEEEecCCCcee
Q 004475 394 PFLDLFDINTGSKE 407 (751)
Q Consensus 394 ~~l~~~d~~~g~~~ 407 (751)
+|++||..+|++.
T Consensus 196 -kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 196 -KVRVIDPRRGTVV 208 (472)
T ss_pred -eeEEEcCCCCcEe
Confidence 8999999888653
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0026 Score=41.60 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=23.8
Q ss_pred EeEeeceeEE-EEEecCCceEEEeeeec-ccceeEEE
Q 004475 293 ILHKLDLRFS-VSWCDDSLALVNETWYK-TSQTRTWL 327 (751)
Q Consensus 293 ~l~~~~~~~~-~~~spdg~~l~~~~~~~-~~~~~l~~ 327 (751)
+++...+... +.|||||++|+|++++. .+..+||+
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4555555666 99999999999999765 24456764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.2 Score=47.77 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCCCcccccCCCCcccccceeecCCCC-----eEEEEEeecccccccCCceeEEEEEcCCCCeeec---cCCCCccccce
Q 004475 17 SLGPEKEVHGYPDGAKINFVSWSPDGK-----RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL---FESPDICLNAV 88 (751)
Q Consensus 17 ~~g~~~~l~~~~~~~~~~~p~~SPDG~-----~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l---t~~~~~~~~~~ 88 (751)
.+|+.....+.......+...|.||-+ .||.. ...-.||.+..+.++.+.- .........+-
T Consensus 83 ~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aP 152 (364)
T KOG0290|consen 83 DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAP 152 (364)
T ss_pred CCCceeccCCCCCCCCccceEecCCccccCcchhhcc----------cCeEEEEeccCcCCceehhhhhccCcccccCCc
Confidence 336666555433334567788999974 34443 4456778777654443221 12222222223
Q ss_pred eeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--C
Q 004475 89 FGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--D 165 (751)
Q Consensus 89 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 165 (751)
+.++.|.- |=++|-..+-+ .+..||-+.. .
T Consensus 153 lTSFDWne~dp~~igtSSiD-----------------------------------------------TTCTiWdie~~~~ 185 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSID-----------------------------------------------TTCTIWDIETGVS 185 (364)
T ss_pred ccccccccCCcceeEeeccc-----------------------------------------------CeEEEEEEeeccc
Confidence 45677763 44455444221 2245555544 3
Q ss_pred C--CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccC
Q 004475 166 G--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 166 G--~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 242 (751)
| +.+.+.....+.+++|+.+|+.++.+... ...+.++|+...+...+ +..+-.. .
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga------------DGSvRmFDLR~leHSTIIYE~p~~~----------~ 243 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA------------DGSVRMFDLRSLEHSTIIYEDPSPS----------T 243 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecC------------CCcEEEEEecccccceEEecCCCCC----------C
Confidence 4 33444444889999999988887665332 34567788765544332 2222111 1
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
-.-.++|++.....++-.. .+..++.++|+- .......+|..+.+.+. ++|.|-++.-+.++..
T Consensus 244 pLlRLswnkqDpnymATf~-----------~dS~~V~iLDiR-~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD--- 308 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFA-----------MDSNKVVILDIR-VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD--- 308 (364)
T ss_pred cceeeccCcCCchHHhhhh-----------cCCceEEEEEec-CCCcceehhhcCcccccceEecCCCCceeeecCC---
Confidence 1235677766654222211 022466666662 22334455566677777 9999998876665522
Q ss_pred ceeEEEecCCC
Q 004475 322 QTRTWLVCPGS 332 (751)
Q Consensus 322 ~~~l~~~~~~~ 332 (751)
..+..+.|++.
T Consensus 309 D~qaliWDl~q 319 (364)
T KOG0290|consen 309 DCQALIWDLQQ 319 (364)
T ss_pred cceEEEEeccc
Confidence 23444445543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0029 Score=64.79 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=40.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+..-+|||||++||.|+. + +-|.|.+-++.+..-+-+. ..+++--++||||||+|+..
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------D--GfLRvF~fdt~eLlg~mkS----YFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------D--GFLRIFDFDTQELLGVMKS----YFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEec--------C--ceEEEeeccHHHHHHHHHh----hccceEEEEEcCCccEEEec
Confidence 4678899999999999974 3 4555555545443333211 12246688999999999977
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.5 Score=45.38 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=29.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
..-+.++||||+..|+++.. ...|.++|+.|...-.+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S-------------~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAES-------------TGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcC-------------CCeEEEEecccceeEEcCc
Confidence 44557899999999999754 3468889998876655533
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.25 Score=51.98 Aligned_cols=205 Identities=12% Similarity=0.017 Sum_probs=118.0
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
-.....+++|.+++-.. .....+.+++.++.....-..... .-..++++||++.++......
T Consensus 76 p~~i~v~~~~~~vyv~~---------~~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTT---------GDSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred ccceeeCCCCCeEEEec---------CCCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc----
Confidence 34668888998775542 235788888855543222211111 135779999999999873311
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCcee-cCCCceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~-lt~~~~~~~~~~SpDG~~i~ 190 (751)
....+.++|. +++... +.-......++++|||+.++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 0146777777 443222 22112236899999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~ 270 (751)
+.... .+.+.+++.++....+ ...... .....+...+.++|||++ ++.....
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~-~yV~~~~------- 227 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNR-VYVANDG------- 227 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCE-EEEEecc-------
Confidence 87532 3567888877665543 211101 111234557899999998 5554311
Q ss_pred ccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 271 EVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.....+..++.. .+..... ........ ...+|+|+.++..... ...+..++..+.
T Consensus 228 --~~~~~v~~id~~---~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~ 285 (381)
T COG3391 228 --SGSNNVLKIDTA---TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATD 285 (381)
T ss_pred --CCCceEEEEeCC---CceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 113467777764 2222221 11111223 6789999987765432 356777777663
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.64 Score=46.22 Aligned_cols=235 Identities=16% Similarity=0.115 Sum_probs=127.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe-cCCc-E-EEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNST-L-LIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDg~-~-l~~~~~~~ 108 (751)
+++....+ +++|... .+.+.+.+++.+|....+++.... .+..++|- +|.. . ++..+.+
T Consensus 107 WVSsv~~~--~~~Iltg----------sYDg~~riWd~~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~D- 168 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTG----------SYDGTSRIWDLKGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMD- 168 (423)
T ss_pred hhhhhccc--CceEEEe----------ecCCeeEEEecCCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCC-
Confidence 55555555 5677664 456777788887776777754443 35667774 3332 2 2222211
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC---CceecC-CC-ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFG-TP-AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~~~~lt-~~-~~~~~~~~S 183 (751)
..-.||.++..- +....- .+ ..+..++..
T Consensus 169 ----------------------------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 169 ----------------------------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred ----------------------------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 124688887732 222221 23 778899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee---cc---------CCCCCCCCC-ccCCccCCCceeeee
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL---CD---------LPPAEDIPV-CYNSVREGMRSISWR 250 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~---------~~~~~~~~~-~~~~~~~~~~~~~~s 250 (751)
+||.++.-.+-+ ..|-+|+........+ +. .......|. .+.....-+..+.|+
T Consensus 203 ~sgtr~~SgS~D-------------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 203 SSGTRFCSGSWD-------------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred CCCCeEEeeccc-------------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 999988765433 3455666222111111 11 111112232 233344456788999
Q ss_pred cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 251 pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
+.+ .+|.. ...-.|.++|++. ++....++ .+..+. +.++|..+.|+.++. ..+|-+.|
T Consensus 270 d~~---v~yS~-----------SwDHTIk~WDlet--g~~~~~~~-~~ksl~~i~~~~~~~Ll~~gss----dr~irl~D 328 (423)
T KOG0313|consen 270 DAT---VIYSV-----------SWDHTIKVWDLET--GGLKSTLT-TNKSLNCISYSPLSKLLASGSS----DRHIRLWD 328 (423)
T ss_pred CCC---ceEee-----------cccceEEEEEeec--ccceeeee-cCcceeEeecccccceeeecCC----CCceeecC
Confidence 833 34422 1334788888862 23333332 344455 889999998887652 24566677
Q ss_pred CCCCCCcceee-eecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 330 PGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 330 ~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++.+..... ..+..+.+-. +.|+|-..+++...
T Consensus 329 PR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred CCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 76653333322 2233333333 77999988766655
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0063 Score=50.16 Aligned_cols=60 Identities=28% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..|+|++.++.|+..| ...++.+.+.|.. .+++.+++.+|+... .......+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 5899999999999999 9999999988864 379999999999864 4445777788888874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.071 Score=56.96 Aligned_cols=99 Identities=12% Similarity=-0.072 Sum_probs=61.5
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee----ceeEE-EEEecCCceEEEeeee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL----DLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~----~~~~~-~~~spdg~~l~~~~~~ 318 (751)
+..+...|..++ ++..- ....|.+++++ .++.+....+ ++..- +...|.|.+|+.+..
T Consensus 599 lYDm~Vdp~~k~-v~t~c------------QDrnirif~i~---sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs- 661 (1080)
T KOG1408|consen 599 LYDMAVDPTSKL-VVTVC------------QDRNIRIFDIE---SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS- 661 (1080)
T ss_pred EEEeeeCCCcce-EEEEe------------cccceEEEecc---ccceeeeecccccCCCceEEEEECCCccEEEEeec-
Confidence 346778888887 43321 12367777775 4444444432 34445 777899999887662
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...|-++|.-++ +-.....+....+.+ +.|++|-|+|+..+
T Consensus 662 ---dktl~~~Df~sg--EcvA~m~GHsE~VTG------~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 662 ---DKTLCFVDFVSG--ECVAQMTGHSEAVTG------VKFLNDCKHLISVS 702 (1080)
T ss_pred ---CCceEEEEeccc--hhhhhhcCcchheee------eeecccchhheeec
Confidence 246778888775 333222333333443 77999999998887
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.46 Score=44.32 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=35.8
Q ss_pred eeceeEE-EEEecCCc----eEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 296 KLDLRFS-VSWCDDSL----ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 296 ~~~~~~~-~~~spdg~----~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+..-++ ++|.|.-. +|+-.+ .++.--||..+.+.+.-+.+.|.+ -...+|. .+||.-|..|+...
T Consensus 205 ~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 205 GHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred hcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 3333345 78888742 233222 234445677775544223333433 1222444 78999999888876
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.8 Score=48.15 Aligned_cols=276 Identities=12% Similarity=0.195 Sum_probs=143.1
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
...++...|+|++.. ||+. ++ ++.-.||-+. ..+ -+....++ +. .++.+.|.+.=-+|+..+.+
T Consensus 51 dGpVRgv~FH~~qpl--FVSG-----GD-DykIkVWnYk--~rr--clftL~GH-lD-YVRt~~FHheyPWIlSASDD-- 114 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPL--FVSG-----GD-DYKIKVWNYK--TRR--CLFTLLGH-LD-YVRTVFFHHEYPWILSASDD-- 114 (1202)
T ss_pred CCccceeeecCCCCe--EEec-----CC-ccEEEEEecc--cce--ehhhhccc-cc-eeEEeeccCCCceEEEccCC--
Confidence 346888999998764 5542 11 4445555444 322 22111111 01 36677788877788766443
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG 186 (751)
..|.+++- ++ .+..+|.+ ..+....|.|..
T Consensus 115 -----------------------------------------------QTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 115 -----------------------------------------------QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred -----------------------------------------------CeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 24555666 55 55667767 667788899988
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC-----------------CCccCCccCCCceeee
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI-----------------PVCYNSVREGMRSISW 249 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 249 (751)
..|+-.+. .+.+.+||..|-..+...+....+.. -.-+.....|+.-.+|
T Consensus 148 DlIVSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 148 DLIVSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 87776544 34688999987655544433110000 0122344456666777
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE--eEeeceeEE-EEEecCCceEEEeeeecccceeEE
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTW 326 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~ 326 (751)
+|.=.- |+ +..|+ ..-.||+++- .+.... ...+-..++ +-|.|....|+..+ +....++|
T Consensus 215 hpTlpl-iV--SG~DD--------RqVKlWrmne----tKaWEvDtcrgH~nnVssvlfhp~q~lIlSns--EDksirVw 277 (1202)
T KOG0292|consen 215 HPTLPL-IV--SGADD--------RQVKLWRMNE----TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS--EDKSIRVW 277 (1202)
T ss_pred cCCcce-EE--ecCCc--------ceeeEEEecc----ccceeehhhhcccCCcceEEecCccceeEecC--CCccEEEE
Confidence 776543 22 22211 1124555543 222221 223344555 77888777665544 23334666
Q ss_pred EecCCCCCCcceeeeecccccccC---CCCCCCeeeCCCCCEEEEeeeecC-----CcceEEEEccCCCCCCCCCceeEE
Q 004475 327 LVCPGSKDVAPRVLFDRVFENVYS---DPGSPMMTRTSTGTNVIAKIKKEN-----DEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~spDG~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
-++-.++ .+.+...-...|. +|.-+.++-..|+-.++|.-.+.- .++.++|+. ..+|+.
T Consensus 278 Dm~kRt~----v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk---------d~~i~~ 344 (1202)
T KOG0292|consen 278 DMTKRTS----VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK---------DRFIRS 344 (1202)
T ss_pred ecccccc----eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc---------cceEEe
Confidence 5544442 3333332222222 222333555566666666654211 123444433 347888
Q ss_pred EecCCCceeEEee
Q 004475 399 FDINTGSKERIWE 411 (751)
Q Consensus 399 ~d~~~g~~~~l~~ 411 (751)
+|+.+.+-..+.+
T Consensus 345 ~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 345 YDLRTQKDTAVAS 357 (1202)
T ss_pred eeccccccceeEe
Confidence 8887755455544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.093 Score=53.59 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=97.1
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+..||+++ +.. +++ +.+.. .++...|||-...|+++. .+.+.|.++|+.....+.++-..+.
T Consensus 135 ~k~~d~s~----a~v-~~~-l~~htDYVR~g~~~~~~~hivvtG---------sYDg~vrl~DtR~~~~~v~elnhg~-- 197 (487)
T KOG0310|consen 135 VKYWDLST----AYV-QAE-LSGHTDYVRCGDISPANDHIVVTG---------SYDGKVRLWDTRSLTSRVVELNHGC-- 197 (487)
T ss_pred EEEEEcCC----cEE-EEE-ecCCcceeEeeccccCCCeEEEec---------CCCceEEEEEeccCCceeEEecCCC--
Confidence 56788888 665 322 22222 578899999999898864 4445555666555434444332222
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
.+..+.+-|.|..|+.. +..++.+||+
T Consensus 198 --pVe~vl~lpsgs~iasA--------------------------------------------------gGn~vkVWDl~ 225 (487)
T KOG0310|consen 198 --PVESVLALPSGSLIASA--------------------------------------------------GGNSVKVWDLT 225 (487)
T ss_pred --ceeeEEEcCCCCEEEEc--------------------------------------------------CCCeEEEEEec
Confidence 26788889999888865 1157888999
Q ss_pred CC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 165 DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+| ......++ ..+...++.-|+.+|+-.+-++ .+-+||...-+. +......
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~Kv--v~s~~~~----------- 279 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNYKV--VHSWKYP----------- 279 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEEccceEE--EEeeecc-----------
Confidence 45 23333435 7888999999999998765543 345666433222 2111111
Q ss_pred CCCceeeeecCCCceEEE
Q 004475 242 EGMRSISWRADKPSTLYW 259 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~ 259 (751)
..+-+++.|||+.. ++.
T Consensus 280 ~pvLsiavs~dd~t-~vi 296 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQT-VVI 296 (487)
T ss_pred cceeeEEecCCCce-EEE
Confidence 12347899999887 444
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.36 Score=52.79 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec
Q 004475 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (751)
Q Consensus 19 g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (751)
+....+.+.... ....+|+.|+||+.+|++. .....||+... ++..+.+..+.. +..|.|.+
T Consensus 329 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~---------~~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d~ 392 (573)
T PRK13614 329 GQISPLPDIQSVAGLGPASPAESPVSQTVAFLN---------GSRTTLYTVSP-GQPARALTSGST------LTRPSFSP 392 (573)
T ss_pred CCcccCCCccCcCcccccceeecCCCceEEEec---------CCCcEEEEecC-CCcceeeecCCC------ccCCcccC
Confidence 555555543322 1467899999999999973 22358888776 456666654442 56778988
Q ss_pred CCcEEEEe
Q 004475 97 NSTLLIFT 104 (751)
Q Consensus 97 Dg~~l~~~ 104 (751)
+| +|...
T Consensus 393 ~g-~vWtv 399 (573)
T PRK13614 393 QD-WVWTA 399 (573)
T ss_pred CC-CEEEe
Confidence 88 66644
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.18 Score=48.86 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCc-eec--CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--Ccee--eeeccCCC
Q 004475 157 AQLVLGSLDGTA-KDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLV--RELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~--~~l~~~~~ 229 (751)
..|+.++++|++ +++ ...++..++++.-+|++++.. ++ ...|++++.+ +... ..+.....
T Consensus 44 ~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er-----------~~~L~~~~~~~~~~~~~~~~~~~~~l 110 (248)
T PF06977_consen 44 GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ER-----------DQRLYIFTIDDDTTSLDRADVQKISL 110 (248)
T ss_dssp TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TT-----------TTEEEEEEE----TT--EEEEEEEE-
T ss_pred CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cC-----------CCcEEEEEEeccccccchhhceEEec
Confidence 478888888843 333 222778899998888665532 21 3457776663 2211 11111110
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--------eceeE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--------LDLRF 301 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~~ 301 (751)
. .....+.+.-+++|+|.++++++..+ . ....||-++... .+........ .-...
T Consensus 111 ~-----~~~~~N~G~EGla~D~~~~~L~v~kE-~----------~P~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 111 G-----FPNKGNKGFEGLAYDPKTNRLFVAKE-R----------KPKRLYEVNGFP-GGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp -------S---SS--EEEEEETTTTEEEEEEE-S----------SSEEEEEEESTT--SS--EEEE-HHHH-HT--SS--
T ss_pred c-----cccCCCcceEEEEEcCCCCEEEEEeC-C----------CChhhEEEcccc-Cccceeeccccccccccceeccc
Confidence 0 00122334558999999999444432 1 112456555410 0111111111 12234
Q ss_pred E-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 302 S-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 302 ~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+ +++.|....|+..+. ....|..++.++
T Consensus 174 S~l~~~p~t~~lliLS~---es~~l~~~d~~G 202 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSD---ESRLLLELDRQG 202 (248)
T ss_dssp -EEEEETTTTEEEEEET---TTTEEEEE-TT-
T ss_pred cceEEcCCCCeEEEEEC---CCCeEEEECCCC
Confidence 5 788888777776662 235788888766
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.4 Score=52.24 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=94.7
Q ss_pred CCcccccCCCCc-c--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEe
Q 004475 19 GPEKEVHGYPDG-A--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (751)
Q Consensus 19 g~~~~l~~~~~~-~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~ws 95 (751)
+..+.+.+.... . ...+++.|+||+.+|++. ....||+-.. ++..+.+.... .+..|.|.
T Consensus 319 ~~~~pv~g~~~~~~~~~~~s~avS~dg~~~A~v~----------~~~~l~vg~~-~~~~~~~~~~~------~Lt~PS~d 381 (557)
T PRK13615 319 GTVTPLGTLGTRVTALQADAATLSADGRQAAVRN----------ASGVWSVGDG-DRDAVLLDTRP------GLVAPSLD 381 (557)
T ss_pred CcceecCCcccccCccccccceEcCCCceEEEEc----------CCceEEEecC-CCcceeeccCC------ccccCcCc
Confidence 555555433221 1 237899999999999973 1236776653 35566664433 25678999
Q ss_pred cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC--
Q 004475 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT-- 173 (751)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~-- 173 (751)
++| ++....... . ..+.....+|+...+.-
T Consensus 382 ~~g-~vWtv~~g~-~----------------------------------------------~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 382 AQG-YVWSTPASD-P----------------------------------------------RGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred CCC-CEEEEeCCC-c----------------------------------------------eEEEEecCCCceEEeeccc
Confidence 998 666542210 0 22333333454333321
Q ss_pred --CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE--EeCCCceeeee-ccCCCCCCCCCccCCccCCCceee
Q 004475 174 --PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 174 --~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
...+..+..|+||-++++...... ..+|++ +..+++.++.| +.. ..+......+..+.
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p-------~~l~~~l~~v~sl~ 476 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGA----------GPQLLVASIVRDGGVPTSLTTTP-------LELLASPGTPLDAT 476 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCC----------CCEEEEEEEEeCCCcceEeeecc-------EEcccCcCcceeeE
Confidence 256889999999999999765322 123443 22244434455 221 00111112355889
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
|..++.- ++... ..+ ...+++++.+.
T Consensus 477 W~~~~~l-aVl~~-~~~--------~~~~v~~v~v~ 502 (557)
T PRK13615 477 WVDELDV-ATLTL-APD--------GERQVELHQVG 502 (557)
T ss_pred EcCCCEE-EEEec-cCC--------CCceEEEEECC
Confidence 9999984 44432 111 22357777774
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=51.53 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcCcccCCccc-CCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC-CCCCchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD-KLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~-~~~~~~~~~~~~~d~~~~v 589 (751)
..++|++||.|....+...... -+-+.-.+..-.......+.||-|+..+..+.+-.-+ ...+..+....++-+.-+-
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 5689999998855443322111 1111112222233445567899988733211111101 1112222223333333333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 625 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~ 625 (751)
..+... ..+..|+++.||+||.+++.++.+.|+.
T Consensus 181 ~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 181 KNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred HHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 334332 3467899999999999999999998753
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.65 Score=44.98 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=67.4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.+.+|+||.+.|+.+.+. +..|.-.+.+|.-++.+.-. +- .+ .-.+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~------------p~~iVElt~~GdlirtiPL~-g~--------~D---pE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNK------------PAAIVELTKEGDLIRTIPLT-GF--------SD---PETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCC------------CceEEEEecCCceEEEeccc-cc--------CC---hhHeEEecCCE
Confidence 558899999999999877554 33566667777655554211 11 11 11567777776
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCC----Cc-eEeEe---eceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE----KP-EILHK---LDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~-~~l~~---~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
+ ++.-+ .+..|+.+.+++.+.- .. ..|.. .+-.+. .+|+|..++|++..++.+ ..|
T Consensus 142 f-vi~dE------------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I 206 (316)
T COG3204 142 F-VIVDE------------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGI 206 (316)
T ss_pred E-EEEeh------------hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEE
Confidence 5 33211 2245666655422110 00 01111 133455 899999999999886654 467
Q ss_pred EEecC
Q 004475 326 WLVCP 330 (751)
Q Consensus 326 ~~~~~ 330 (751)
|.++.
T Consensus 207 ~~~~~ 211 (316)
T COG3204 207 FEVTQ 211 (316)
T ss_pred EEEec
Confidence 77763
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.015 Score=56.19 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CceeEEEEccCCCCCCCCccCccccccc
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----P-----HLFCCGIARSGSYNKTLTPFGFQTEFRT 651 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~~~v~~~~~~d~~~~~~~~~~~~~~ 651 (751)
....+.+.++.|.+.. ...+|.|++||||+.+.+.++..- + .+|..+++.+|-++....
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f---------- 142 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVF---------- 142 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHH----------
Confidence 3455566666666552 347999999999999999886542 1 246677777775442110
Q ss_pred chhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCC
Q 004475 652 LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKV 686 (751)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v 686 (751)
...+. .+.+...++.+.+..+|...
T Consensus 143 ----~~~~~------~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 143 ----RSQLP------DLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred ----HHHHH------HHhhcCCCEEEEEcCCchHH
Confidence 00000 23334478999999999753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.21 Score=49.47 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=72.5
Q ss_pred EEEEEcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.|..+|+ +| ....++....+..+..+|+.+.|+-.+.+ ..|.+||+.++.-..+..
T Consensus 282 TIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd-------------r~irl~DPR~~~gs~v~~--------- 339 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD-------------RHIRLWDPRTGDGSVVSQ--------- 339 (423)
T ss_pred eEEEEEeecccceeeeecCcceeEeecccccceeeecCCC-------------CceeecCCCCCCCceeEE---------
Confidence 5777888 55 55666666778899999999888765544 368899997553221110
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
.|.....-+..+.|+|...+.++-.+ ..+.+.++|+- .+.+....|...+..+- +.|.. |..|+-
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S------------~D~t~klWDvR-S~k~plydI~~h~DKvl~vdW~~-~~~IvS 405 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGS------------YDNTVKLWDVR-STKAPLYDIAGHNDKVLSVDWNE-GGLIVS 405 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEe------------cCCeEEEEEec-cCCCcceeeccCCceEEEEeccC-CceEEe
Confidence 11122223557899999988433333 34577777763 22234455555555555 67753 444543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.44 Score=46.16 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=43.1
Q ss_pred EEEEEcCCC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
+|.+++... ....+..+ +.+..++..|.||.-+-... ...|.+||+-.++.-.+....
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~-------------D~~lr~WNLV~Gr~a~v~~L~------ 168 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG-------------DQVLRTWNLVRGRVAFVLNLK------ 168 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC-------------CceeeeehhhcCccceeeccC------
Confidence 455555422 22333334 55778999999985443322 235778988765443332221
Q ss_pred CccCCccCCCceeeeecCCCceEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
.....+.|+|.|.++++.
T Consensus 169 -------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 169 -------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred -------CcceeeEEcCCCCEEEEE
Confidence 112247999999983443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.29 E-value=2.6 Score=48.83 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=41.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+.++.|--|+..|.+.... .++.++|+++...+.+.. ...|+...+||||+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-------------G~iilvd~et~~~eivg~-------------vd~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-------------GDIILVDPETLELEIVGN-------------VDNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecC-------------CcEEEEcccccceeeeee-------------ccCceEEEeecCCCc
Confidence 456778888888888776433 357788888776655422 235567889999999
Q ss_pred ceEEEEE
Q 004475 255 STLYWVE 261 (751)
Q Consensus 255 ~~i~~~~ 261 (751)
. ++++.
T Consensus 123 ~-l~liT 128 (1265)
T KOG1920|consen 123 L-LALIT 128 (1265)
T ss_pred E-EEEEe
Confidence 8 55554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.2 Score=43.35 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=69.3
Q ss_pred eEEEEEcCCC--CceecCCC-ceEEeeeeCCCCc--eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G--~~~~lt~~-~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
..|.++|+.. +...|..+ +.+....|+++-. +|+-.+. +..+.+|+...= ..+
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd-------------DG~i~iw~~~~W--~~~------- 120 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD-------------DGHIIIWRVGSW--ELL------- 120 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC-------------CCcEEEEEcCCe--EEe-------
Confidence 3677888833 55566666 7788888888875 5654433 335777876532 111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
..+.+....+..++.+|.|+- ++.- .....|.++++- .+...-+........ +.|+|.|.
T Consensus 121 ---~slK~H~~~Vt~lsiHPS~KL--ALsV-----------g~D~~lr~WNLV---~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 121 ---KSLKAHKGQVTDLSIHPSGKL--ALSV-----------GGDQVLRTWNLV---RGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred ---eeecccccccceeEecCCCce--EEEE-----------cCCceeeeehhh---cCccceeeccCCcceeeEEcCCCC
Confidence 112222333568899999995 3321 122456666663 222222333333334 79999999
Q ss_pred eEEEee
Q 004475 311 ALVNET 316 (751)
Q Consensus 311 ~l~~~~ 316 (751)
+++...
T Consensus 182 ~F~v~~ 187 (362)
T KOG0294|consen 182 HFVVSG 187 (362)
T ss_pred EEEEEe
Confidence 887765
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.44 Score=45.54 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=73.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee---eccCCCCccccceeeeeEEec--CCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVN--NSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~---~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~ 106 (751)
.+.-.-|-|++.+||-+. .++|-+++++.+..+ .+... .....-.+.+-+||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~-----------dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-----------DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred ceeeEEEcCCCCeeEEec-----------cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCC
Confidence 467788999999999974 256777777665431 12211 111111245669998 8998887732
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC--ceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~--~~~~~~~~ 182 (751)
+.|+.+|+ +- +.-.|-+. ..+.++.|
T Consensus 193 --------------------------------------------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf 222 (370)
T KOG1007|consen 193 --------------------------------------------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDF 222 (370)
T ss_pred --------------------------------------------------CcEEEEEccchhhhcchhhhhcceeeeccC
Confidence 46666776 22 33344333 45778999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCC
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (751)
.|.-++++++..+. .-+.+||...
T Consensus 223 Npnkq~~lvt~gDd------------gyvriWD~R~ 246 (370)
T KOG1007|consen 223 NPNKQHILVTCGDD------------GYVRIWDTRK 246 (370)
T ss_pred CCCceEEEEEcCCC------------ccEEEEeccC
Confidence 99999999987653 3467888763
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.4 Score=43.66 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=111.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC-CCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~-~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
++....+-|-.+|++.- .....+-|+|+++|+.+.-.. .-. .+..++.|+---+|+....+
T Consensus 153 WVr~vavdP~n~wf~tg----------s~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~ged--- 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATG----------SADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGED--- 214 (460)
T ss_pred eEEEEeeCCCceeEEec----------CCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCC---
Confidence 67778888887777763 455788899999998665332 222 46788999988888766332
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC-C-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~-~-~~~~~~~~SpDG~ 187 (751)
.++..+|+ ..+..+--. + ..+..++..|.=.
T Consensus 215 ----------------------------------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 215 ----------------------------------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred ----------------------------------------------CeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 47888888 444433322 2 6677888888877
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
.|+.... ...+.+||+.++... .|..+... +..+.+.|-... |+-.+
T Consensus 249 vl~t~gr-------------Dst~RvWDiRtr~~V~~l~GH~~~-------------V~~V~~~~~dpq-vit~S----- 296 (460)
T KOG0285|consen 249 VLVTGGR-------------DSTIRVWDIRTRASVHVLSGHTNP-------------VASVMCQPTDPQ-VITGS----- 296 (460)
T ss_pred eEEecCC-------------cceEEEeeecccceEEEecCCCCc-------------ceeEEeecCCCc-eEEec-----
Confidence 7765432 346789999876533 33323222 223444444444 44443
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
....+.++|+.. +.....++.....+. ....|.-..++-
T Consensus 297 -------~D~tvrlWDl~a--gkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 297 -------HDSTVRLWDLRA--GKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred -------CCceEEEeeecc--CceeEeeecccceeeEEecCCchhhhhc
Confidence 345788888742 445666677666666 677776665544
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=60.64 Aligned_cols=148 Identities=11% Similarity=-0.000 Sum_probs=77.3
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc-CCCCccCCC----CchHHHHHHhCCeEEE
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGM----TPTSSLIFLARRFAVL 558 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~G~~v~ 558 (751)
+.+....+..+..|++...+ ++ ...|+||++.|||..+.-. +.+. -+|-....- .......+.+. ..+|
T Consensus 16 l~~~~~~~~~lfyw~~~s~~-~~---~~~Pl~~wlnGGPG~SS~~-g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN-DP---EDDPLILWLNGGPGCSSMW-GLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS-GG---CSS-EEEEEE-TTTB-THH-HHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EecCCCCCcEEEEEEEEeCC-CC---CCccEEEEecCCceecccc-ccccccCceEEeecccccccccccccccc-cceE
Confidence 33433345567777775443 22 2379999999997554311 1111 122222200 00111122222 4555
Q ss_pred EcCCCCCCCCCCCCCCch---hHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C------CC
Q 004475 559 AGPSIPIIGEGDKLPNDR---FVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PH 624 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~------p~ 624 (751)
.+|.+-..|++....... ..+...+|+..++ .|+...+.....++.|.|-|+||..+..+|.. . +-
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 556555667655433332 2345566666666 34444455666789999999999988777643 2 22
Q ss_pred ceeEEEEccCCCC
Q 004475 625 LFCCGIARSGSYN 637 (751)
Q Consensus 625 ~~~~~v~~~~~~d 637 (751)
.++++++.+|+++
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 4889999998865
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.26 Score=51.81 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCceecC---CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFG---TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt---~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 232 (751)
..+.+..++....+.. ..+.+..+.|.|---++++.... .+.+||+...++. .|.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~------- 604 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLL------- 604 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHh-------
Confidence 4566667754222222 12778899999999888887533 5778888654321 111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee---------ceeEE-
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---------DLRFS- 302 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---------~~~~~- 302 (751)
..-.-+..++.+|.|.. |+..+ ....+..+|++ ......+.+.-+ ...+.
T Consensus 605 ------tg~kwiS~msihp~GDn-li~gs------------~d~k~~WfDld-lsskPyk~lr~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 605 ------TGSKWISSMSIHPNGDN-LILGS------------YDKKMCWFDLD-LSSKPYKTLRLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred ------cCCeeeeeeeecCCCCe-EEEec------------CCCeeEEEEcc-cCcchhHHhhhhhhhhhhhhhccccce
Confidence 11123457899999999 44433 22456666663 222222222111 11222
Q ss_pred -EEEecCCceEEEee
Q 004475 303 -VSWCDDSLALVNET 316 (751)
Q Consensus 303 -~~~spdg~~l~~~~ 316 (751)
.+-|+||..++|-.
T Consensus 665 fas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHG 679 (733)
T ss_pred eeeecCCCcEEEEee
Confidence 34578888887755
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.89 Score=49.05 Aligned_cols=87 Identities=16% Similarity=0.304 Sum_probs=49.6
Q ss_pred eEEeecCCCCCCCCcccccCC---------CC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-ee
Q 004475 7 IGIHRLLPDDSLGPEKEVHGY---------PD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AK 75 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~---------~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~ 75 (751)
+.|.-|.+++.+++.+-|... .+ ...++.++|.-.-++|-.. +.++.--||. +-.|. ..
T Consensus 38 LKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS--------Dt~GlIiVWm--lykgsW~E 107 (1189)
T KOG2041|consen 38 LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS--------DTSGLIIVWM--LYKGSWCE 107 (1189)
T ss_pred eEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc--------CCCceEEEEe--eecccHHH
Confidence 566667776677766654321 11 1256778888887777552 1133344443 33444 23
Q ss_pred eccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 76 PLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.++....- ..+.+.+|..||+.|+..-.
T Consensus 108 EMiNnRnK---SvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 108 EMINNRNK---SVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred HHhhCcCc---cEEEEEEEcCCCcEEEEEEc
Confidence 33322211 14678999999999987744
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.11 Score=56.20 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=114.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
...|-+|||+- . +..++++.+.+.. .+....|++--..|+... ...+.|-.+|+...+.+..+.+..
T Consensus 109 nG~i~vWdlnk--~-~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---------SQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 109 NGVISVWDLNK--S-IRNKLLTVFNEHERSANKLDFHSTEPNILISG---------SQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred CCcEEEEecCc--c-ccchhhhHhhhhccceeeeeeccCCccEEEec---------CCCceEEEEeeecccccccccccc
Confidence 45789999965 2 4456655444433 678889999888888754 233566666776767777666543
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
. .++.++|||--...++...+. +.|-++
T Consensus 177 E----SiRDV~fsp~~~~~F~s~~ds------------------------------------------------G~lqlW 204 (839)
T KOG0269|consen 177 E----SIRDVKFSPGYGNKFASIHDS------------------------------------------------GYLQLW 204 (839)
T ss_pred h----hhhceeeccCCCceEEEecCC------------------------------------------------ceEEEe
Confidence 2 478999998655555553321 344445
Q ss_pred cC---CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 163 SL---DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 163 ~~---~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
|+ +.-..+++.+ +.+....|+|++.+||.-.. ...+.+|+..+.+...+.... ...
T Consensus 205 DlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-------------DK~vkiWd~t~~~~~~~~tIn--Tia----- 264 (839)
T KOG0269|consen 205 DLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-------------DKMVKIWDMTDSRAKPKHTIN--TIA----- 264 (839)
T ss_pred eccCchhHHHHhhcccCceEEEeecCCCceeeecCC-------------CccEEEEeccCCCccceeEEe--ecc-----
Confidence 55 2345667777 77889999999999886542 345778888765443321110 011
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccC
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA 283 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (751)
-+..+.|-|+-++.|+.++.- ....|+++|+
T Consensus 265 ----pv~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDv 295 (839)
T KOG0269|consen 265 ----PVGRVKWRPARSYHLATCSMV----------VDTSVHVWDV 295 (839)
T ss_pred ----eeeeeeeccCccchhhhhhcc----------ccceEEEEee
Confidence 134789999999866665422 2246777776
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.062 Score=50.49 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.++...+|.-+| ...+..+.+... .+++.+.. +||.-...-....+.++|.+-|+..
T Consensus 309 ~ivv~A~~D~Yip--r~gv~~lQ~~WP----g~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIP--RTGVRSLQEIWP----GCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCcccc--ccCcHHHHHhCC----CCEEEEee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 6778889999988 655555555443 35666665 5797554455566777777777654
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0085 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH----HHHHHHHHHHHHHHhcCC
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV----MHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~----~~~~~~~~~fl~~~l~~~ 743 (751)
+|+.|+.-..|+. .+.+..|..+|+..|.++.+.++.+..|+|.+.... .+..+.-++=|...|..+
T Consensus 788 Pp~~i~ac~mDP~----LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~~~ 858 (880)
T KOG4388|consen 788 PPVHIVACAMDPM----LDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLTPP 858 (880)
T ss_pred CCceEEEeccCcc----hhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhCCC
Confidence 6899999999998 577889999999999999999999999998764322 233334445555555543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.89 Score=43.73 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=34.6
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--C---eeeccCCCCccccceeeeeEEecCCcEEEEee
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--E---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 105 (751)
..+.+.||+.||.+.+ ..|-|...+.. . .-++-+.+ ++-.+.++||||+..||+..
T Consensus 2 ~~~~~~~Gk~lAi~qd-----------~~iEiRsa~Ddf~si~~kcqVpkD~----~PQWRkl~WSpD~tlLa~a~ 62 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-----------QCIEIRSAKDDFSSIIGKCQVPKDP----NPQWRKLAWSPDCTLLAYAE 62 (282)
T ss_pred ceeecCCCcEEEEEec-----------cEEEEEeccCCchheeEEEecCCCC----CchheEEEECCCCcEEEEEc
Confidence 3578999999999753 33444443321 1 11232222 22356789999999999983
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.2 Score=48.70 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
=|+|.|+.. ++...-- ...|..+....+.|+...++-.. +....|.++++.+..-..+..+-+ ..
T Consensus 116 vIrVid~~~----~~~~~~~-~ghG~sINeik~~p~~~qlvls~---------SkD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 116 VIRVIDVVS----GQCSKNY-RGHGGSINEIKFHPDRPQLVLSA---------SKDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred EEEEEecch----hhhccce-eccCccchhhhcCCCCCcEEEEe---------cCCceEEEEeccCCeEEEEecccc-cc
Confidence 478888877 6655422 23455788999999998777654 445778888888877666654422 11
Q ss_pred cceeeeeEEecCCcEEEEe
Q 004475 86 NAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~ 104 (751)
...+-++.||+||.+|+-.
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 2246688999999988865
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.22 Score=48.30 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=62.1
Q ss_pred eEEEEEcCCC-Cc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCC
Q 004475 157 AQLVLGSLDG-TA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 230 (751)
++|-++++.. +. .-+..+ ..+..++.+-+|..||..+... .-|.+||..+|.. .++-.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------------TLIRIFdt~~g~~l~E~RR---- 222 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------------TLIRIFDTEDGTLLQELRR---- 222 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------------EEEEEEEcCCCcEeeeeec----
Confidence 5777888833 22 444444 7788999999999998876542 3467899876643 33211
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
......+..++||||+.+ ++.++ +.+.|+++.+.
T Consensus 223 -------G~d~A~iy~iaFSp~~s~-LavsS------------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 223 -------GVDRADIYCIAFSPNSSW-LAVSS------------DKGTLHIFSLR 256 (346)
T ss_pred -------CCchheEEEEEeCCCccE-EEEEc------------CCCeEEEEEee
Confidence 122345679999999999 77765 45678887775
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.81 Score=44.49 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=56.8
Q ss_pred CCceeEEEEEcCCCCee---eccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccc
Q 004475 59 SCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIIS 135 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~---~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (751)
-..++|-|+++..-+.. -+-.+.. .+.-++.+-+|..||..+..
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vATaStk---------------------------- 202 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVATASTK---------------------------- 202 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEEeccC----------------------------
Confidence 34478888888765542 2211111 35677888999988877442
Q ss_pred hhhhhccCCccchhhhhhheeeEEEEEcC-CC----CceecCCCceEEeeeeCCCCceEEEEEec
Q 004475 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDFGTPAVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G----~~~~lt~~~~~~~~~~SpDG~~i~~~~~~ 195 (751)
..-|.+.|. +| +.++=++...+..++||||+.+|+++++.
T Consensus 203 --------------------GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 203 --------------------GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred --------------------cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 135666777 77 33444555888999999999999998764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.3 Score=49.79 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=71.7
Q ss_pred eEEEEEcC-CCCcee-cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
.+||+|.+ +|..-. +..+ ..+.-+.||-||++|+..+.+. .+.+|.+..- +.......-.
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~l----v~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTDL----VSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEee----cccccCCCcc
Confidence 58999999 885432 2333 6778899999999987665443 3445543210 0000000000
Q ss_pred C-CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce
Q 004475 234 P-VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~-~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~ 311 (751)
| .-|......+..+...+-|...-+++.+ ....+.++++. .+..-.-...+..+. ++.+|-.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-----------~D~t~k~wdlS---~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTAS-----------EDRTIKLWDLS---LGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEec-----------CCceEEEEEec---cceeeEEEecCCcceeEEEcccccE
Confidence 1 0111122223344444443322333322 22356666664 232222223455566 788898888
Q ss_pred EEEeeeecccceeEEEecCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++.++. ...||+.++..
T Consensus 232 ~yiGt~----~G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTE----EGKIFQNLLFK 248 (476)
T ss_pred EEecCC----cceEEeeehhc
Confidence 777552 34677766654
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=55.80 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEE
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIA 631 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~ 631 (751)
..|+. ....|++.........+++.+...+.|..++ + ...+.+.|+|+||.+|.-+|.+- .+.+..+++
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~Q--P---~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRVQ--P---EGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHhC--C---CCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55666 4455554333333445555554444444332 2 24799999999999999998653 245666666
Q ss_pred ccCCCC
Q 004475 632 RSGSYN 637 (751)
Q Consensus 632 ~~~~~d 637 (751)
+.....
T Consensus 99 lD~~~~ 104 (257)
T COG3319 99 LDAVPP 104 (257)
T ss_pred eccCCC
Confidence 665433
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0065 Score=58.18 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.0
Q ss_pred CCcEEEEEeChHHHHHHHHHH
Q 004475 600 PSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 600 ~~~i~l~G~S~GG~~a~~~a~ 620 (751)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999977765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.39 Score=51.10 Aligned_cols=168 Identities=10% Similarity=0.106 Sum_probs=91.7
Q ss_pred EEEEEcC--CC--CceecCCC-ceEEeeee-CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC-CC
Q 004475 158 QLVLGSL--DG--TAKDFGTP-AVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PA 230 (751)
Q Consensus 158 ~l~~~~~--~G--~~~~lt~~-~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~ 230 (751)
.+.+++. .+ -...|..+ ..+..++. .++... +.+ +.+...|++||++++..+.+.... ..
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~l-vaS------------gGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNEL-VAS------------GGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCcee-EEe------------cCCCccEEEEEccCcchhhhhhccccc
Confidence 4455554 32 44556556 66667777 444443 332 223557999999977443221111 11
Q ss_pred CCCCCccC-CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 231 EDIPVCYN-SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~-~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.. .+. .....+++++-.+.|. ++... .-.+.|.++|. .+......|..+...+. +..++|
T Consensus 163 ~~---sl~sG~k~siYSLA~N~t~t--~ivsG-----------gtek~lr~wDp--rt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 163 VN---SLGSGPKDSIYSLAMNQTGT--IIVSG-----------GTEKDLRLWDP--RTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred cc---cCCCCCccceeeeecCCcce--EEEec-----------CcccceEEecc--ccccceeeeeccccceEEEEEcCC
Confidence 11 011 2234566777777773 33321 12357888885 33455566666666777 888999
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeee--cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|.+++-++. .+..+||-+..+. .++. .....+|. +..+|+=+.+++..
T Consensus 225 Gt~~ls~sS--DgtIrlWdLgqQr------Cl~T~~vH~e~VWa------L~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 225 GTRLLSASS--DGTIRLWDLGQQR------CLATYIVHKEGVWA------LQSSPSFTHVYSGG 274 (735)
T ss_pred CCeEeecCC--CceEEeeeccccc------eeeeEEeccCceEE------EeeCCCcceEEecC
Confidence 999887662 3334666554333 2221 22223554 55567767777665
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.59 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 635 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~ 635 (751)
.+++..-++++++.-.-| .||.++|||-|++|.+.+...... .+..++++-|.
T Consensus 92 ~~QV~HKlaFik~~~Pk~-~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 92 QDQVDHKLAFIKEYVPKD-RKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred hhHHHHHHHHHHHhCCCC-CEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 455667788887763333 689999999999999999874322 35566665553
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.68 Score=44.39 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred eEEEEEcC-CCCc-eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCCC
Q 004475 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (751)
.++-+.|+ +|.- ..|..+ ..+..+.|||...+|+++... ...+.+||+. .+-.+.|-.+....
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa------------Dg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSA------------DGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCC------------CceEEEEEeecccceeEEeecccCcc
Confidence 57888899 8844 344444 889999999999999987543 3346667764 33344443332210
Q ss_pred CC-CCccCCccCCCceeeeecCCCceEEE
Q 004475 232 DI-PVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 232 ~~-~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
-. ...-++...-+.+++|+.||++ ++.
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~-l~~ 263 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARY-LAS 263 (397)
T ss_pred Cccccccccccceeeeeeecccchh-hhh
Confidence 00 0111223334568999999998 444
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.9 Score=41.43 Aligned_cols=146 Identities=10% Similarity=0.145 Sum_probs=75.8
Q ss_pred ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCce----eeeeccCCCCCCCCCccCCccCCCceeee
Q 004475 175 AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISW 249 (751)
Q Consensus 175 ~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (751)
..+.++.|.. |-++|..++-+- .--+||++++. ..+| .+....+..++|
T Consensus 151 aPlTSFDWne~dp~~igtSSiDT-------------TCTiWdie~~~~~~vkTQL-------------IAHDKEV~DIaf 204 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDT-------------TCTIWDIETGVSGTVKTQL-------------IAHDKEVYDIAF 204 (364)
T ss_pred CcccccccccCCcceeEeecccC-------------eEEEEEEeeccccceeeEE-------------EecCcceeEEEe
Confidence 4566888887 556665554332 23367777652 2233 334455778999
Q ss_pred ecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecC-CceEEEeeeeccccee
Q 004475 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDD-SLALVNETWYKTSQTR 324 (751)
Q Consensus 250 spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spd-g~~l~~~~~~~~~~~~ 324 (751)
+.+|.. +|++ +...+.+.++|+-.. ...+.+.+.+. .+- ++|.+. -++++... -...+
T Consensus 205 ~~~s~~--~FAS----------vgaDGSvRmFDLR~l--eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~---~dS~~ 267 (364)
T KOG0290|consen 205 LKGSRD--VFAS----------VGADGSVRMFDLRSL--EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA---MDSNK 267 (364)
T ss_pred ccCccc--eEEE----------ecCCCcEEEEEeccc--ccceEEecCCCCCCcceeeccCcCCchHHhhhh---cCCce
Confidence 998776 3433 224456666666321 12333433322 222 566543 33333222 22356
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.++|+.-. ..+..-.......+.. ++|.|..+..+..+
T Consensus 268 V~iLDiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 268 VVILDIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred EEEEEecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 777777654 2222222223333333 89999977666655
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.66 Score=48.71 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=45.9
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
+..+..++--. |+.+...++.....+...+..+-.+++. . ....... ....++ +.|+.||-.++.++
T Consensus 178 lN~v~in~~hg--Lla~Gt~~g~VEfwDpR~ksrv~~l~~~---~-~v~s~pg~~~~~svTal~F~d~gL~~aVGt---- 247 (703)
T KOG2321|consen 178 LNVVSINEEHG--LLACGTEDGVVEFWDPRDKSRVGTLDAA---S-SVNSHPGGDAAPSVTALKFRDDGLHVAVGT---- 247 (703)
T ss_pred ceeeeecCccc--eEEecccCceEEEecchhhhhheeeecc---c-ccCCCccccccCcceEEEecCCceeEEeec----
Confidence 34555555543 3333334444444444444555555553 1 1111111 122345 88999998888866
Q ss_pred cceeEEEecCCCCCCcceeeeec
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
....++++|+.+ ..+..+-++
T Consensus 248 s~G~v~iyDLRa--~~pl~~kdh 268 (703)
T KOG2321|consen 248 STGSVLIYDLRA--SKPLLVKDH 268 (703)
T ss_pred cCCcEEEEEccc--CCceeeccc
Confidence 235789999987 344444433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.24 Score=49.06 Aligned_cols=131 Identities=11% Similarity=0.163 Sum_probs=73.5
Q ss_pred eeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC
Q 004475 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (751)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (751)
..|++|...++.-. +-. ..|......+-.+.|||..+..++-++ -.+.|.++|+-.. .
T Consensus 234 ~~I~lw~~~~g~W~-vd~--------~Pf~gH~~SVEDLqWSptE~~vfaScS------------~DgsIrIWDiRs~-~ 291 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWK-VDQ--------RPFTGHTKSVEDLQWSPTEDGVFASCS------------CDGSIRIWDIRSG-P 291 (440)
T ss_pred cceEeeeeccCcee-ecC--------ccccccccchhhhccCCccCceEEeee------------cCceEEEEEecCC-C
Confidence 46788877665322 111 223334445568999999998333333 2346777776321 1
Q ss_pred CCceEe-EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 289 EKPEIL-HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 289 ~~~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
...... ...+..+. ++|+-+-..|++.. +.+...||-+..-.. +.++..+........+ +.|+|....+
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~--DdGt~~iwDLR~~~~-~~pVA~fk~Hk~pIts------ieW~p~e~s~ 362 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGG--DDGTLSIWDLRQFKS-GQPVATFKYHKAPITS------IEWHPHEDSV 362 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecC--CCceEEEEEhhhccC-CCcceeEEeccCCeeE------EEeccccCce
Confidence 223333 34566777 99987777676655 334456666554443 3344444433333333 7899887766
Q ss_pred EEee
Q 004475 367 IAKI 370 (751)
Q Consensus 367 ~~~~ 370 (751)
+..+
T Consensus 363 iaas 366 (440)
T KOG0302|consen 363 IAAS 366 (440)
T ss_pred EEec
Confidence 5555
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.056 Score=53.84 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCceeEEEEccCCCC
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A----PHLFCCGIARSGSYN 637 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~----p~~~~~~v~~~~~~d 637 (751)
.....+++.++++|.+... ..+|.|++||||.++++.++-+ . +.+++-+|+.+|=.|
T Consensus 171 ~~Sr~aLe~~lr~La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 171 NYSRPALERLLRYLATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred hhhHHHHHHHHHHHHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 3446777888999988754 3689999999999999887643 2 235777888888655
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.9 Score=39.57 Aligned_cols=56 Identities=7% Similarity=-0.100 Sum_probs=34.6
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++..|.|+.|+..... +..-++|..++ ...+-+.....++.. +.|||...+++..+
T Consensus 237 v~vdpsgrll~sg~~d----ssc~lydirg~--r~iq~f~phsadir~------vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHAD----SSCMLYDIRGG--RMIQRFHPHSADIRC------VRFSPGAHYLLTCS 292 (350)
T ss_pred EEECCCcceeeeccCC----CceEEEEeeCC--ceeeeeCCCccceeE------EEeCCCceEEEEec
Confidence 7788999988765532 23444566664 334433333333333 77999998888777
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.4 Score=42.42 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=85.7
Q ss_pred EEEecCCce-EEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 ~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
..++|-... ++|... ++ .--++.|.++. .+++.+........+ +. -.|||||.+|+...++-
T Consensus 73 i~~~p~~~ravafARr--PG-tf~~vfD~~~~-~~pv~~~s~~~RHfy---GH--Gvfs~dG~~LYATEndf-------- 135 (366)
T COG3490 73 IAFHPALPRAVAFARR--PG-TFAMVFDPNGA-QEPVTLVSQEGRHFY---GH--GVFSPDGRLLYATENDF-------- 135 (366)
T ss_pred eecCCCCcceEEEEec--CC-ceEEEECCCCC-cCcEEEecccCceee---cc--cccCCCCcEEEeecCCC--------
Confidence 678888665 555552 22 34667788775 455555443332222 33 34899999998877442
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC--------------
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK-------------- 447 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------------- 447 (751)
+..+..|-+||...+ .+++-. ....--+++...+.+||++|+......
T Consensus 136 --------d~~rGViGvYd~r~~-fqrvgE---------~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 136 --------DPNRGVIGVYDAREG-FQRVGE---------FSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred --------CCCCceEEEEecccc-cceecc---------cccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 234456777777532 223311 111112345678999999988865421
Q ss_pred CCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEc
Q 004475 448 TEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYL 500 (751)
Q Consensus 448 ~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~ 500 (751)
..-+.+.++|..+|....-..++ +.+.....+++.+- .+|....+--|.
T Consensus 198 sMePSlvlld~atG~liekh~Lp---~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLP---ASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred hcCccEEEEeccccchhhhccCc---hhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 12345666776665432211111 13444566777665 455545554443
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.024 Score=58.19 Aligned_cols=125 Identities=23% Similarity=0.260 Sum_probs=72.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE-EcCCC-CCCCC---
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL-AGPSI-PIIGE--- 568 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~-~~~~~-~~~g~--- 568 (751)
+..-+|.|. .++.+ .-++|+++||||.++...-.+ +. ...|+..+-+++ ..+|+ +-.|.
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdv------Yd------Gk~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDV------YD------GKFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceee------ec------cceeeeeccEEEEEeeeeeccceEEec
Confidence 566677784 33333 348999999998765442211 11 234455554444 35553 11121
Q ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 569 -GDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 569 -g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
+..+.+ ..-.+-|.+-|++|+++.- .=|+++|.|+|.|+|+.....-+..- ...|+.+|+.+|..+
T Consensus 185 ~~~~eaP---GNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAP---GNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCC---CccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 111111 1223566778999998851 13799999999999998664433322 236888888888655
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=49.77 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=89.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-----eeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
...+++.|+||+.+|++. .....||+-++.++.. +.+.... .+..|.|.++| +|...
T Consensus 364 ~~~s~avS~~g~~~A~v~---------~~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g-~vWtv-- 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGIS---------ADGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRG-DLWVV-- 425 (599)
T ss_pred CccceEEcCCCceEEEEc---------CCCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCC-CEEEe--
Confidence 567899999999999984 2345788866544332 2333322 25678999988 56544
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC----ceEEeeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AVYTAVEP 182 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~----~~~~~~~~ 182 (751)
+.... ...-|+++.-+|+...+... ..+..+..
T Consensus 426 d~~~~-------------------------------------------~~~vl~v~~~~G~~~~V~~~~l~g~~I~~lrv 462 (599)
T PRK13613 426 DRDPA-------------------------------------------DPRLLWLLQGDGEPVEVRTPELDGHRVVAVRV 462 (599)
T ss_pred cCCCC-------------------------------------------CceEEEEEcCCCcEEEeeccccCCCEeEEEEE
Confidence 11000 00123444335543333222 36889999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEE--EeC-CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQV--WTT-DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~--~d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
|+||-++++...... ..+|++ +.. ..+. ..|+.. ..+......+..++|..++.- ++.
T Consensus 463 SrDG~RvAvv~~~~g----------~~~v~va~V~R~~~G~-~~l~~~-------~~l~~~l~~v~~~~W~~~~sL-~Vl 523 (599)
T PRK13613 463 ARDGVRVALIVEKDG----------RRSLQIGRIVRDAKAV-VSVEEF-------RSLAPELEDVTDMSWAGDSQL-VVL 523 (599)
T ss_pred CCCccEEEEEEecCC----------CcEEEEEEEEeCCCCc-EEeecc-------EEeccCCCccceeEEcCCCEE-EEE
Confidence 999999999865321 123333 222 2332 333221 111111123568899999984 443
Q ss_pred EEeccCCCCccccCcccceeeccCC
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
.. ..+ ....++++.++
T Consensus 524 g~-~~~--------~~~~v~~v~vd 539 (599)
T PRK13613 524 GR-EEG--------GVQQARYVQVD 539 (599)
T ss_pred ec-cCC--------CCcceEEEecC
Confidence 32 111 12367888885
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=5.4 Score=45.98 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=40.4
Q ss_pred eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
..|||.+++++..+..+..+ -......++.++.+++ ......... .+..+.|||.|+.|+|...
T Consensus 103 ~~s~d~~~~~~~~~~~~~~r-hs~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFR-HSYTAKYHLYDLNTGEKLHPPEYEGS-----KIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccc-eeeEEEEEEEEcCCCCcccCcccCCC-----eeEEEEEcCCCCEEEEEEe
Confidence 78899999999765322111 1444566677777776 111111111 2567899999999999854
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.049 Score=48.99 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCC
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGS 635 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~ 635 (751)
.+...+...++....+ ....+|.++|||+||.+|..++..... ....++.+++.
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 3445555555555443 235789999999999999999877643 34556666654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.097 Score=54.35 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=83.5
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIP 564 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~ 564 (751)
|...++...+=++|.+..+... .-|+.|++-|-|... ..+..........+| +.|-.|+...
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~~~---~gPiFLmIGGEgp~~-----------~~wv~~~~~~~~~~AkkfgA~v~~lE--- 125 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWAKP---GGPIFLMIGGEGPES-----------DKWVGNENLTWLQWAKKFGATVFQLE--- 125 (514)
T ss_pred hhcchhhhhhhheeeccccccC---CCceEEEEcCCCCCC-----------CCccccCcchHHHHHHHhCCeeEEee---
Confidence 3334444555566666554321 248899997754211 112121122233444 5688888733
Q ss_pred CCCCCCCCC-------Cch--hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 565 IIGEGDKLP-------NDR--FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 565 ~~g~g~~~~-------~~~--~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
.+=+|.+.+ ... ...+.+.|+...|+.+..+- .-+..+++.+|.|+-|.|++++=.++|+.+.+.|+.++
T Consensus 126 HRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 126 HRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred eeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 333332211 111 23467889999998887763 44556999999999999999999999999999998887
Q ss_pred C
Q 004475 635 S 635 (751)
Q Consensus 635 ~ 635 (751)
+
T Consensus 206 p 206 (514)
T KOG2182|consen 206 P 206 (514)
T ss_pred c
Confidence 6
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.29 E-value=3.5 Score=40.95 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=96.8
Q ss_pred CcceeEEeecCCCCCCCCccc-ccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...-|.+|||++ |+.+. |++ ....+...++|+--.++..+ ....+|--+|++..+..+-..+.
T Consensus 171 ~DrtikIwDlat----g~LkltltG--hi~~vr~vavS~rHpYlFs~----------gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 171 ADRTIKIWDLAT----GQLKLTLTG--HIETVRGVAVSKRHPYLFSA----------GEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred CCceeEEEEccc----CeEEEeecc--hhheeeeeeecccCceEEEe----------cCCCeeEEEechhhhhHHHhccc
Confidence 345799999999 88774 432 22268899999998888554 34478888899887755543322
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
- + ++..+.-.|--..|+....+ +.+.+
T Consensus 235 l---S-~V~~L~lhPTldvl~t~grD-------------------------------------------------st~Rv 261 (460)
T KOG0285|consen 235 L---S-GVYCLDLHPTLDVLVTGGRD-------------------------------------------------STIRV 261 (460)
T ss_pred c---c-eeEEEeccccceeEEecCCc-------------------------------------------------ceEEE
Confidence 1 1 35566777877666654321 34455
Q ss_pred EcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCcc
Q 004475 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 162 ~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~ 237 (751)
+|+ +. ++..+..+ ..+..+.+.|-.-+|+..+.+ ..+.+||+..+ ....++.+.
T Consensus 262 WDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~~tlt~hk--------- 319 (460)
T KOG0285|consen 262 WDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTMITLTHHK--------- 319 (460)
T ss_pred eeecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCceeEeeeccc---------
Confidence 555 33 44444444 555566666644455554443 46889999744 444554443
Q ss_pred CCccCCCceeeeecCCCc
Q 004475 238 NSVREGMRSISWRADKPS 255 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~ 255 (751)
..+|.++.+|.-..
T Consensus 320 ----ksvral~lhP~e~~ 333 (460)
T KOG0285|consen 320 ----KSVRALCLHPKENL 333 (460)
T ss_pred ----ceeeEEecCCchhh
Confidence 33667788887643
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.035 Score=53.00 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEccCC
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSGS 635 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~~~ 635 (751)
.|++|+.+...-.+.+|.+.|||.||++|..+++..+ +++..++.+.++
T Consensus 70 ~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 70 SALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 4455554431112346999999999999999998843 467788877764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.2 Score=41.81 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=35.2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCC-cceeeee-cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+++.|-+++|+... ....+|..+++..+. ....++. .....+.. .+||.||..|+...
T Consensus 313 f~~d~~~~~la~gn----q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ------~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 313 FAFDPWQKMLALGN----QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ------TSFSRDGSILVLVC 372 (385)
T ss_pred EeecHHHHHHhhcc----CCCcEEEEECCCCCCccCceEEeccccceeee------eeecccCcEEEEEe
Confidence 56667788877644 335788888877422 1122322 22222222 77999999888877
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.024 Score=57.00 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
.++...|....+.+|++........|+++|.|+||++|++.=.++|..+.++++.+.
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSA 200 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASA 200 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccC
Confidence 356689999999999887555667899999999999999999999998877666554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.67 Score=47.34 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEE
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i 66 (751)
.+||+|.|++ |....+- ...-+.++-..||-||+.|...++ ++...+|.
T Consensus 103 g~lYlWelss----G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgsk--------Dg~V~vW~ 151 (476)
T KOG0646|consen 103 GNLYLWELSS----GILLNVL-SAHYQSITCLKFSDDGSHIITGSK--------DGAVLVWL 151 (476)
T ss_pred CcEEEEEecc----ccHHHHH-HhhccceeEEEEeCCCcEEEecCC--------CccEEEEE
Confidence 3899999999 9998875 233347888999999999866432 55556663
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.03 E-value=4.9 Score=41.31 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=24.3
Q ss_pred EEEEEcC-CCCceec-CCC-ceEEeeeeCCCCceEEEEEecC
Q 004475 158 QLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHR 196 (751)
Q Consensus 158 ~l~~~~~-~G~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (751)
.+.+++. ++++.+. +.+ +.+.+.+|-..-..++..+.++
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 5557777 6665554 545 7777888865445666655443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.31 Score=52.53 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCCCCChHHHHHHHHHHHhC-CC-------cEEEEEeCCCCCcCCcc-ccHHHHHHHHHHHHHHHhc
Q 004475 673 KPILIIHGEVDDKVGLFPMQAERFFDALKGH-GA-------LSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 673 ~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~-~~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l~ 741 (751)
..+|+.||..|+++| +..+..+|+++.+. +. =.+|.++||.+|..... ...-+.+..+.+|.++-..
T Consensus 354 GKLI~~HG~aD~~I~--p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~A 429 (474)
T PF07519_consen 354 GKLILYHGWADPLIP--PQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGKA 429 (474)
T ss_pred CeEEEEecCCCCccC--CCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCCC
Confidence 569999999999999 99999999998653 21 27899999999987644 3344788889999986443
|
It also includes several bacterial homologues of unknown function. |
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.5 Score=48.16 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=77.1
Q ss_pred eeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC
Q 004475 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (751)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (751)
.+|-+..+++++.+.|.... -.+.|++...|=+.. |||+. ..+....|-+.+++ |
T Consensus 1090 D~IevA~LdG~~rkvLf~td------------LVNPR~iv~D~~rgn-LYwtD---------WnRenPkIets~mD---G 1144 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTD------------LVNPRAIVVDPIRGN-LYWTD---------WNRENPKIETSSMD---G 1144 (1289)
T ss_pred chhheeecCCceeeEEEeec------------ccCcceEEeecccCc-eeecc---------ccccCCcceeeccC---C
Confidence 35667778887766553322 234667888888887 88853 22233477788886 6
Q ss_pred CCceEeEeeceeEE--EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 289 EKPEILHKLDLRFS--VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 289 ~~~~~l~~~~~~~~--~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
...+.+...+-.+- +.|.|..+.|.+.- .+..+|--+..++. ..+.+. .+.+. | ++...+++.+
T Consensus 1145 ~NrRilin~DigLPNGLtfdpfs~~LCWvD---AGt~rleC~~p~g~--gRR~i~-~~LqY-------P-F~itsy~~~f 1210 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSKLLCWVD---AGTKRLECTLPDGT--GRRVIQ-NNLQY-------P-FSITSYADHF 1210 (1289)
T ss_pred ccceEEeecccCCCCCceeCcccceeeEEe---cCCcceeEecCCCC--cchhhh-hcccC-------c-eeeeeccccc
Confidence 67777777665554 88889888887754 33345555555553 222222 22221 1 5577888888
Q ss_pred EEeeee
Q 004475 367 IAKIKK 372 (751)
Q Consensus 367 ~~~~~~ 372 (751)
++..+.
T Consensus 1211 Y~TDWk 1216 (1289)
T KOG1214|consen 1211 YHTDWK 1216 (1289)
T ss_pred eeeccc
Confidence 888754
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.3 Score=51.99 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--------------------Cc-EEEEEeCCCCCcCCccccHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------AL-SRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
..++||..|..|.+|+ ...+++..+.|.=.+ .. ..+..+-++||... ..++..+.
T Consensus 351 girVLiY~GD~D~icn--~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp--~qP~~al~ 426 (437)
T PLN02209 351 GYRSLIFSGDHDITMP--FQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE--YLPEESSI 426 (437)
T ss_pred CceEEEEECCccccCC--cHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC--cCHHHHHH
Confidence 3689999999999998 888888888875111 12 56777889999883 47778888
Q ss_pred HHHHHHH
Q 004475 731 ETDRWLQ 737 (751)
Q Consensus 731 ~~~~fl~ 737 (751)
.+.+|+.
T Consensus 427 m~~~fi~ 433 (437)
T PLN02209 427 MFQRWIS 433 (437)
T ss_pred HHHHHHc
Confidence 8888885
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.085 Score=46.54 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
..+.+.+.++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 46 ~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 46 LYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 34455566655655543 3789999999999999999875
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.19 Score=62.91 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=49.9
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCcee
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFC 627 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~p~~~~ 627 (751)
...++.|+. .+..|++.........+.+.+++.+.++.+. ...++.++|||+||.+|..+|.+ .++++.
T Consensus 1091 l~~~~~v~~---~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~ 1162 (1296)
T PRK10252 1091 LDPQWSIYG---IQSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVA 1162 (1296)
T ss_pred cCCCCcEEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCcee
Confidence 345788888 3444554433333445566666655554331 12479999999999999999885 467788
Q ss_pred EEEEccC
Q 004475 628 CGIARSG 634 (751)
Q Consensus 628 ~~v~~~~ 634 (751)
.+++..+
T Consensus 1163 ~l~l~~~ 1169 (1296)
T PRK10252 1163 FLGLLDT 1169 (1296)
T ss_pred EEEEecC
Confidence 8777665
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.14 Score=51.54 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=56.4
Q ss_pred cCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004475 539 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 539 ~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~ 618 (751)
|..+-......|..+|+-|+..|...|. ......+....|+.+++++...+. ...++.++|+|+|+=+-..+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLRYf------W~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLRYF------WSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhhhh------hccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHH
Confidence 3334445677889999999985553332 222345778899999999998774 35799999999999888777
Q ss_pred HHhCCC
Q 004475 619 LAHAPH 624 (751)
Q Consensus 619 a~~~p~ 624 (751)
-.+-|.
T Consensus 344 ~n~L~~ 349 (456)
T COG3946 344 YNRLPP 349 (456)
T ss_pred HHhCCH
Confidence 666544
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.11 Score=53.40 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCC
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGS 635 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~~~ 635 (751)
+..-|+.+..... ..+|.++||||||..+.+++...+ .+++.++.+++.
T Consensus 113 l~~~V~~~l~~~g--a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 113 LFAYVDEVLAKTG--AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred HHHHHHHHHhhcC--CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3344444443322 368999999999999999998887 789999988875
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.4 Score=40.95 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCCeeeccCC----------CCccccceeeeeEEecCCcEEEEeecC
Q 004475 62 LRVWIADAETGEAKPLFES----------PDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 62 ~~l~i~~~~~g~~~~lt~~----------~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
+.|+.++.+|...+.+.-. ....-|.++..++++|||+.|+.....
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 8999999874333433111 111234567899999999988877554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.7 Score=38.51 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=35.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCccccccee--ecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~--~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~ 75 (751)
..|..+|+.+ |+...-..+.. ....+. ..+++.+|+.. .....|+.+++.+|+..
T Consensus 3 g~l~~~d~~t----G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~----------~~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 3 GTLSALDPRT----GKELWSYDLGP--GIGGPVATAVPDGGRVYVA----------SGDGNLYALDAKTGKVL 59 (238)
T ss_dssp SEEEEEETTT----TEEEEEEECSS--SCSSEEETEEEETTEEEEE----------ETTSEEEEEETTTSEEE
T ss_pred CEEEEEECCC----CCEEEEEECCC--CCCCccceEEEeCCEEEEE----------cCCCEEEEEECCCCCEE
Confidence 3577888877 88886554421 133344 45577777664 35689999999888743
|
... |
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.5 Score=44.34 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+...+.+-+..++++| ..+.+.++|.|.|||.+-|+..+++- ...|+|..-|+.+
T Consensus 337 yE~~I~~~I~~~L~~L----gF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 337 YEQGIINVIQEKLDYL----GFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHHHHHHHHh----CCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 4444455555555555 46778999999999999999999875 2367788778766
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=6.3 Score=38.47 Aligned_cols=107 Identities=12% Similarity=0.249 Sum_probs=61.7
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT 167 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 167 (751)
.++.+.|+||.+.|+.+... ..+|..++.+|+
T Consensus 87 nvS~LTynp~~rtLFav~n~------------------------------------------------p~~iVElt~~Gd 118 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK------------------------------------------------PAAIVELTKEGD 118 (316)
T ss_pred cccceeeCCCcceEEEecCC------------------------------------------------CceEEEEecCCc
Confidence 36789999999999877331 147777788884
Q ss_pred c-eecCC--CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE--eCCCceeeeec-cCCCCCCCCCccCCcc
Q 004475 168 A-KDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW--TTDGKLVRELC-DLPPAEDIPVCYNSVR 241 (751)
Q Consensus 168 ~-~~lt~--~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~--d~~~~~~~~l~-~~~~~~~~~~~~~~~~ 241 (751)
. ++++- ..+...+.|.-+|++++.... ...++.+ +.++.....-. ..++. .....+
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER-------------~~~l~~~~vd~~t~~~~~~~~~i~L~-----~~~k~N 180 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDER-------------DRALYLFTVDADTTVISAKVQKIPLG-----TTNKKN 180 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehh-------------cceEEEEEEcCCccEEeccceEEecc-----ccCCCC
Confidence 3 33322 255567888888887765422 2345544 44443222111 11111 011113
Q ss_pred CCCceeeeecCCCceEEEEE
Q 004475 242 EGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~ 261 (751)
.|.-+++|+|...+ ++++.
T Consensus 181 ~GfEGlA~d~~~~~-l~~aK 199 (316)
T COG3204 181 KGFEGLAWDPVDHR-LFVAK 199 (316)
T ss_pred cCceeeecCCCCce-EEEEE
Confidence 45568999999999 44443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.87 E-value=4.1 Score=41.93 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=41.7
Q ss_pred CCCceeeeecCCCceEEEEEeccCC--CCccccCcccceeeccCCCCCCC-------------CceEeEeeceeEE-EEE
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRG--DANVEVSPRDIIYTQPAEPAEGE-------------KPEILHKLDLRFS-VSW 305 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~l~~~~~~~~-~~~ 305 (751)
.....+.|.||| + |++.-..... ........++.|.+++.+ +. .......+-.... ++|
T Consensus 114 H~g~~l~fgpDG-~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~d---G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~ 188 (331)
T PF07995_consen 114 HNGGGLAFGPDG-K-LYVSVGDGGNDDNAQDPNSLRGKILRIDPD---GSIPADNPFVGDDGADSEIYAYGLRNPFGLAF 188 (331)
T ss_dssp S-EEEEEE-TTS-E-EEEEEB-TTTGGGGCSTTSSTTEEEEEETT---SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred CCCccccCCCCC-c-EEEEeCCCCCcccccccccccceEEEeccc---CcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence 344579999999 4 5554332222 111123345788888875 32 2334444444445 899
Q ss_pred ecCCceEEEeeeecccceeEEEecC
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
.|....|+...+......+|.++..
T Consensus 189 d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 189 DPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp ETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ECCCCcEEEEccCCCCCcEEEEecc
Confidence 9994445444433333356666643
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=9.4 Score=40.24 Aligned_cols=218 Identities=18% Similarity=0.220 Sum_probs=110.1
Q ss_pred ceeEEeecCCCCCCCC--cccccCCCCcccccceee-cCCCCeEEEEEeecccccccCCceeEEEEEcCC-CC-eeeccC
Q 004475 5 TGIGIHRLLPDDSLGP--EKEVHGYPDGAKINFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GE-AKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~--~~~l~~~~~~~~~~~p~~-SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~-~~~lt~ 79 (751)
..+.+++... +. ...+..... ..+....+ ++|+..++.... .....+.+++..+ .. ...+..
T Consensus 87 ~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~d~~~~~~~~~~~~~~~~~~~~ 153 (466)
T COG2319 87 GTIKLWDLDN----GEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASS--------SLDGTVKLWDLSTPGKLIRTLEG 153 (466)
T ss_pred CcEEEEEcCC----CceeEEEEeccCC-CceeeEEEECCCcceEEeccC--------CCCccEEEEEecCCCeEEEEEec
Confidence 4567777766 53 333332111 12444455 899983333221 2234677777665 33 333332
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
... .+..+.|+|+++.++.... .. ..+
T Consensus 154 ~~~-----~v~~~~~~~~~~~~~~~~~---~~---------------------------------------------~~~ 180 (466)
T COG2319 154 HSE-----SVTSLAFSPDGKLLASGSS---LD---------------------------------------------GTI 180 (466)
T ss_pred Ccc-----cEEEEEECCCCCEEEecCC---CC---------------------------------------------Cce
Confidence 222 3568899999995555421 00 355
Q ss_pred EEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee--eccCCCCCCCC
Q 004475 160 VLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIP 234 (751)
Q Consensus 160 ~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~~~~~~ 234 (751)
.++++ .+ ....+..+ ..+..++|+|+|+.++..... ...+.+|+...+.... +..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~------ 242 (466)
T COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS------ 242 (466)
T ss_pred EEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC------------CCcEEEEECCCCcEEeeecCCCC------
Confidence 66666 33 23333333 678899999999944443111 2345567665333222 11110
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
... ...|+|++.. ++... ..+.+.++++... ......+......+. ..|+|++..++
T Consensus 243 -------~~~-~~~~~~~~~~-~~~~~------------~d~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~ 300 (466)
T COG2319 243 -------DSV-VSSFSPDGSL-LASGS------------SDGTIRLWDLRSS-SSLLRTLSGHSSSVLSVAFSPDGKLLA 300 (466)
T ss_pred -------cce-eEeECCCCCE-EEEec------------CCCcEEEeeecCC-CcEEEEEecCCccEEEEEECCCCCEEE
Confidence 011 1179999954 33221 2246666666411 111122212234455 78999888877
Q ss_pred EeeeecccceeEEEecCCC
Q 004475 314 NETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~ 332 (751)
... .+ ....+| +..+
T Consensus 301 ~~~-~d-~~~~~~--~~~~ 315 (466)
T COG2319 301 SGS-SD-GTVRLW--DLET 315 (466)
T ss_pred Eee-CC-CcEEEE--EcCC
Confidence 733 22 334566 5555
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=3.7 Score=45.09 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=76.2
Q ss_pred EEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCc
Q 004475 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVC 236 (751)
Q Consensus 158 ~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~ 236 (751)
.|+.....+..+.+.....+..++|+++| +++...... ...+.++..++. +........ ....+
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~~---v~~~~ 430 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTVT---LTADW 430 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCccccccccee---ecccc
Confidence 66766664555555555667789999999 777654332 124445444321 111000000 00001
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-----ceeEE-EEEecCCc
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFS-VSWCDDSL 310 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~~-~~~spdg~ 310 (751)
+. ...+..+..|+||-+++++++ .+ .+.+|++-.+....++.++.|+.. ..... +.|..++.
T Consensus 431 l~--g~~I~~lrvSrDG~R~Avi~~-~~---------g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s 498 (573)
T PRK13614 431 LA--GRTVKELRVSREGVRALVISE-QN---------GKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST 498 (573)
T ss_pred cC--CCeeEEEEECCCccEEEEEEE-eC---------CccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE
Confidence 11 122678999999999444443 11 223455544322223444454432 22344 89999988
Q ss_pred eEEEeeeecccceeEEEecCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.++..... ..+..++++.++.+
T Consensus 499 l~V~~~~~-~~~~~~~~v~v~~g 520 (573)
T PRK13614 499 VVVTKASA-TSNVVPELLSVDAG 520 (573)
T ss_pred EEEEeccC-CCcceEEEEEeCCC
Confidence 66655432 23456777777543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.1 Score=47.73 Aligned_cols=86 Identities=20% Similarity=0.383 Sum_probs=42.9
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
|..|.+.... .|.+||.++++. +++ +.+ .++.+.||+||+. ++++.
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i-~v~--------------~vk~V~Ws~~g~~-val~t--- 163 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRI-DVS--------------AVKYVIWSDDGEL-VALVT--- 163 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEE-SS---------------E-EEEEE-TTSSE-EEEE----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEE-ecC--------------CCcEEEEECCCCE-EEEEe---
Confidence 8888776432 488999986643 333 111 1458899999998 66654
Q ss_pred CCCCccccCcccceeeccCCC-------CCCC--CceEeEeeceeEE-EEEecCCceEEEee
Q 004475 265 RGDANVEVSPRDIIYTQPAEP-------AEGE--KPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-------~~~~--~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
...+|+++.+. .+|- ....+.+....+. ..|-.| .++|++
T Consensus 164 ----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 164 ----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ----------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 23566655420 0111 2233334355555 788776 777766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.64 E-value=5.1 Score=41.99 Aligned_cols=173 Identities=8% Similarity=-0.047 Sum_probs=77.9
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccc-cCcccceeeccCCCCCCCC--ceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVE-VSPRDIIYTQPAEPAEGEK--PEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
.++.++|.++|+ |++++..+-...... ....++|++++-...++.. .+.+........ +.+.++| |+++.
T Consensus 15 ~P~~ia~d~~G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-- 88 (367)
T TIGR02604 15 NPIAVCFDERGR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-- 88 (367)
T ss_pred CCceeeECCCCC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC--
Confidence 345889999998 555543211111000 1112367776542222322 123332222234 7888988 44433
Q ss_pred cccceeEEEe-cCCCC---CCcceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC--CCCCC
Q 004475 319 KTSQTRTWLV-CPGSK---DVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG--FTPEG 391 (751)
Q Consensus 319 ~~~~~~l~~~-~~~~~---~~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (751)
...|+.+ +.++. ..+.+.+... .............++|.|||+ |++..... .+.. ...... .....
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~-~~~~--~~~~~~~~~~~~~ 161 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT-LASK--VTRPGTSDESRQG 161 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC-CCce--eccCCCccCcccc
Confidence 2357766 44332 1123334322 111000011122377999995 65544210 0000 000000 01112
Q ss_pred CCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEE
Q 004475 392 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKI 440 (751)
Q Consensus 392 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 440 (751)
....+++++.++++.+.+. .. ...+..++|+++|+.+
T Consensus 162 ~~g~i~r~~pdg~~~e~~a-~G-----------~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVA-HG-----------FQNPYGHSVDSWGDVF 198 (367)
T ss_pred cCceEEEEecCCCeEEEEe-cC-----------cCCCccceECCCCCEE
Confidence 2357999999877655442 11 2233446899988653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.76 Score=48.90 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--------------------Cc-EEEEEeCCCCCcCCccccHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------AL-SRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
..++||..|..|.+|| ....++..++|.=.+ .. ..+.++-++||... ..+...+.
T Consensus 347 ~irVLiY~Gd~D~icn--~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~ 422 (433)
T PLN03016 347 GYRSLIYSGDHDIAVP--FLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFI 422 (433)
T ss_pred CceEEEEECCccccCC--cHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHH
Confidence 3689999999999998 888888888874111 12 56777889999983 46778888
Q ss_pred HHHHHHHH
Q 004475 731 ETDRWLQK 738 (751)
Q Consensus 731 ~~~~fl~~ 738 (751)
.+.+|+..
T Consensus 423 m~~~Fi~~ 430 (433)
T PLN03016 423 MFQRWISG 430 (433)
T ss_pred HHHHHHcC
Confidence 88888853
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.6 Score=38.01 Aligned_cols=82 Identities=11% Similarity=-0.036 Sum_probs=46.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~ 82 (751)
..+.+++++. +..+.....+. ....+.++|||+++++.|. ...+|+.+.++...+ ..++.-+.
T Consensus 138 ht~k~~~~~~----~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vg----------ds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 138 HTGKTMVVSG----DSNKFAVHNQN-LTQNSLHYSNDPSWGSSVG----------DSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred cceeEEEEec----Ccccceeeccc-cceeeeEEcCCCceEEEec----------CCCcceEEEeCCccceeeeeEeccc
Confidence 3567777777 55555432232 2367899999999999984 335677666654332 22211111
Q ss_pred ccccceeeeeEEecCCcEEEEe
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+ + --...||-.....|..
T Consensus 203 ~D-~--gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 203 SD-H--GFYNSFSENDLQFAVV 221 (344)
T ss_pred CC-C--ceeeeeccCcceEEEE
Confidence 10 0 1234787666555555
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=5.4 Score=43.74 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=75.4
Q ss_pred EEEEEcCCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCcc
Q 004475 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 158 ~l~~~~~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (751)
.|++-...|..+.+.....+..++|+++| +++...... ...+.....++ +...+ ..+..
T Consensus 356 ~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-----------~~~l~~~~~~G-~~~~v-~v~~~------- 414 (557)
T PRK13615 356 VWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-----------PRGLVAWGPDG-VGHPV-AVSWT------- 414 (557)
T ss_pred eEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-----------ceEEEEecCCC-ceEEe-ecccc-------
Confidence 45544445555555544667789999999 777654332 11222333222 23222 11211
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-Ee------eceeEE-EEEecCC
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK------LDLRFS-VSWCDDS 309 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~------~~~~~~-~~~spdg 309 (751)
....+..+..|+||-+++++++ . ..+++|++..+.. .++.++.| +. ..+... +.|..++
T Consensus 415 --~~~~I~~lrvSrDG~R~Avi~~-~---------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 415 --ATGRVVSLEVARDGARVLVQLE-T---------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred --CCCeeEEEEeCCCccEEEEEEe-c---------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 1123678999999999444433 1 1224566544322 24444444 22 223444 8999999
Q ss_pred ceEEEeeeecccceeEEEecCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..++..... ..+..++++.+.+.
T Consensus 482 ~laVl~~~~-~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTLAP-DGERQVELHQVGGP 504 (557)
T ss_pred EEEEEeccC-CCCceEEEEECCCc
Confidence 965555322 24456788888764
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.51 Score=47.12 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh---------CCeEEEEc
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---------RRFAVLAG 560 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~G~~v~~~ 560 (751)
.|.+|+..-..|++... ++..+| ++++||-| |+...|. .....|.. .-|-|++
T Consensus 132 eGL~iHFlhvk~p~~k~-~k~v~P-lLl~HGwP-----------Gsv~EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKK-KKKVKP-LLLLHGWP-----------GSVREFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCcccc-CCcccc-eEEecCCC-----------chHHHHH----hhhhhhcCccccCCccceeEEEec-
Confidence 46677777777776422 233444 56789954 1111111 11222222 2367888
Q ss_pred CCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 561 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 561 ~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
+..+|+|-+... ..+... .++.+++-|--+ +.-++..|-|.-+|..++..+|..+|+.+.+.=+.-
T Consensus 194 --PSlPGygwSd~~sk~GFn~~---a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAA---ATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred --cCCCCcccCcCCccCCccHH---HHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 445566555433 223222 223444433222 234799999999999999999999999876654433
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.10 E-value=5.6 Score=39.86 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=43.0
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-----cccceeecCC----CCeEEEEEeecccccccCCceeEEEEEcCCCCe
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-----KINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-----~~~~p~~SPD----G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~ 74 (751)
.+.|.++||.+ ++..+.-.+|... ....+++... ++.+||+.. .+...|.|+|+.+++.
T Consensus 33 ~pKLv~~Dl~t----~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD--------~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 33 PPKLVAFDLKT----NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD--------SGGPGLIVYDLATGKS 100 (287)
T ss_dssp --EEEEEETTT----TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE--------TTTCEEEEEETTTTEE
T ss_pred CcEEEEEECCC----CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC--------CCcCcEEEEEccCCcE
Confidence 36899999999 8775544344322 3445666552 237889875 4456999999999999
Q ss_pred eeccCC
Q 004475 75 KPLFES 80 (751)
Q Consensus 75 ~~lt~~ 80 (751)
+++...
T Consensus 101 ~Rv~~~ 106 (287)
T PF03022_consen 101 WRVLHN 106 (287)
T ss_dssp EEEETC
T ss_pred EEEecC
Confidence 888665
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.08 E-value=12 Score=38.48 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=73.6
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC---CCCCccCCccCCCceeeeecC
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE---DIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~spd 252 (751)
+..++++.+||..+ ++..... .......|+.++.++...+.+. .|..- .....-...+.+.-+++++||
T Consensus 86 D~Egi~~~~~g~~~-is~E~~~------~~~~~p~I~~~~~~G~~~~~~~-vP~~~~~~~~~~~~~~~N~G~E~la~~~d 157 (326)
T PF13449_consen 86 DPEGIAVPPDGSFW-ISSEGGR------TGGIPPRIRRFDLDGRVIRRFP-VPAAFLPDANGTSGRRNNRGFEGLAVSPD 157 (326)
T ss_pred ChhHeEEecCCCEE-EEeCCcc------CCCCCCEEEEECCCCcccceEc-cccccccccCccccccCCCCeEEEEECCC
Confidence 44467776677544 3332210 1111367899998865544441 12110 000011223345568999999
Q ss_pred CCceEEEEEeccCCCCcc---ccCcccceeeccCCCCCCCCceEe-Ee--------eceeEE-EEEecCCceEEEeeee-
Q 004475 253 KPSTLYWVEAQDRGDANV---EVSPRDIIYTQPAEPAEGEKPEIL-HK--------LDLRFS-VSWCDDSLALVNETWY- 318 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~l-~~--------~~~~~~-~~~spdg~~l~~~~~~- 318 (751)
|+.+++.++..-..+... .....-.|+.++... .+...... .. ....++ +.+-+|++.|+.....
T Consensus 158 G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~-~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 158 GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKT-PGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred CCEEEEEECccccCCCcccccccCceEEEEEecCCC-CCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 998555554331111111 111123566666531 11111111 11 234456 8888999977766532
Q ss_pred --cccceeEEEecCCC
Q 004475 319 --KTSQTRTWLVCPGS 332 (751)
Q Consensus 319 --~~~~~~l~~~~~~~ 332 (751)
.....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 12446899998764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.05 E-value=13 Score=39.81 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=77.3
Q ss_pred eEEEEEcCCC-CceecCCC---ceEEeeeeCCCC-ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee--ccCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP---AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL--CDLPP 229 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~---~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~ 229 (751)
.+|.++..+| +.+.|... .+...+.||-.. ..|......-. . .+...-+..+|+....+.+++ +..+.
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s----~-~g~~~~d~ciYE~~r~klqrvsvtsipL 258 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSIS----V-KGEPSADSCIYECSRNKLQRVSVTSIPL 258 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecC----C-CCCceeEEEEEEeecCceeEEEEEEEec
Confidence 5788888855 55555322 444567777733 44433322110 0 111233445566555555544 22222
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
. ..+...+++|+.+++++-++ .+.|.++|.. ...+..+...-... ++|.|+
T Consensus 259 ~-----------s~v~~ca~sp~E~kLvlGC~-------------DgSiiLyD~~----~~~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 259 P-----------SQVICCARSPSEDKLVLGCE-------------DGSIILYDTT----RGVTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred C-----------CcceEEecCcccceEEEEec-------------CCeEEEEEcC----CCeeeeeeecccceEEEEcCC
Confidence 2 34568899999999666554 3578888863 22333444444445 899999
Q ss_pred CceEEEeeeecccceeEEEecCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|..++..+. .++|...|..-
T Consensus 311 gai~~V~s~----qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSE----QGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcC----CceEEEEEeec
Confidence 998877663 23555555543
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.8 Score=45.56 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC-CCCCCC------CccC--cccccccch--------hhH--H-
Q 004475 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-SYNKTL------TPFG--FQTEFRTLW--------EAT--N- 657 (751)
Q Consensus 598 id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~-~~d~~~------~~~~--~~~~~~~~~--------~~~--~- 657 (751)
+..+...+.|.|--|..++..|...|. +.++|.+.- ..+... ..++ ++......+ +.+ .
T Consensus 231 ~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~fkq 309 (507)
T COG4287 231 VEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLFKQ 309 (507)
T ss_pred eeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHHHH
Confidence 556789999999999999999999864 444444331 111000 0000 000000000 001 1
Q ss_pred HHHhcCccccc-----CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 658 VYIEMSPITHA-----NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 658 ~~~~~~~~~~~-----~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
...-.+|+... .++..|-+|+.+..|...+ ++.+.-+++.|... .-+.+.|+..|...
T Consensus 310 L~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~~H~~~ 372 (507)
T COG4287 310 LLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPNDPHNLI 372 (507)
T ss_pred HHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCCcchhh
Confidence 11222444433 5677999999999999887 89998899888743 46999999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=10 Score=40.86 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=39.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeec--cCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
-+....|-| |+-..... .+...+..+++++++.... ..+.. ..+.+.+++|+.+.++.+
T Consensus 102 AifDl~wap-ge~~lVsa---------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSA---------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred eeEeeccCC-CceeEEEc---------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 467888999 76554432 5667888888888775544 22222 246788999999877766
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.96 E-value=5.4 Score=43.93 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=33.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
.-..+-|||.| .|||. ...-|.++|..+-+..+....+. ..+..+.|+|--
T Consensus 17 N~~A~Dw~~~G-LiAyg-----------shslV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYG-----------SHSLVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAP 67 (1062)
T ss_pred cccccccCccc-eEEEe-----------cCceEEEEehhhhhhhhccccCc----cceeEEEeccCC
Confidence 45677899999 99994 44788899865544333322222 246788998754
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.95 E-value=3.3 Score=42.11 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..+.+.+.+..|.++| ..+.+++.+..+..|..+...-+.++.|..........+.....+|+.....
T Consensus 225 ~~~~ly~~s~~d~v~~--~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~ 292 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLP--ADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVIS 292 (350)
T ss_pred cccceeecCCcccccc--HHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccc
Confidence 3567777799999998 8999999888899999999999999999987777788999999999998754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.65 E-value=17 Score=39.19 Aligned_cols=201 Identities=12% Similarity=0.143 Sum_probs=109.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESP 81 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~ 81 (751)
|..++-+||-.+ -...+--.+.+ ..++...|=+--.||+.- ....+|.+.+..+++. ++...++
T Consensus 33 ynG~V~IWnyet----qtmVksfeV~~-~PvRa~kfiaRknWiv~G----------sDD~~IrVfnynt~ekV~~FeAH~ 97 (794)
T KOG0276|consen 33 YNGDVQIWNYET----QTMVKSFEVSE-VPVRAAKFIARKNWIVTG----------SDDMQIRVFNYNTGEKVKTFEAHS 97 (794)
T ss_pred ecCeeEEEeccc----ceeeeeeeecc-cchhhheeeeccceEEEe----------cCCceEEEEecccceeeEEeeccc
Confidence 556777888766 32222111122 246777777777787763 4456777778777764 3332222
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .++.++-.|.--+++..+.+ ..|.+
T Consensus 98 D-----yIR~iavHPt~P~vLtsSDD-------------------------------------------------m~iKl 123 (794)
T KOG0276|consen 98 D-----YIRSIAVHPTLPYVLTSSDD-------------------------------------------------MTIKL 123 (794)
T ss_pred c-----ceeeeeecCCCCeEEecCCc-------------------------------------------------cEEEE
Confidence 2 35677777877777665432 23444
Q ss_pred EcCCC--Ccee-cCCC-ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSLDG--TAKD-FGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~~G--~~~~-lt~~-~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++-++ ..++ ...+ ..+..++|.|. ...++-.+.++ .+-+|.+....+- ..
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-------------TVKVWslgs~~~n------------fT 178 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR-------------TVKVWSLGSPHPN------------FT 178 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc-------------cEEEEEcCCCCCc------------ee
Confidence 44433 3333 3434 66778999994 45555554443 4667777543221 23
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
+.....|+..+.+-+-|.+ -+.++..|+ ..+-++|... ....+.|..+...++ +.|.|.=-
T Consensus 179 l~gHekGVN~Vdyy~~gdk-pylIsgaDD----------~tiKvWDyQt--k~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDK-PYLISGADD----------LTIKVWDYQT--KSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eeccccCcceEEeccCCCc-ceEEecCCC----------ceEEEeecch--HHHHHHhhcccccceEEEecCCCc
Confidence 3445567778888888877 556553322 2455555531 223344444444444 44444433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=5.7 Score=42.77 Aligned_cols=130 Identities=9% Similarity=0.093 Sum_probs=72.8
Q ss_pred eEEEEEcC-CCCceec-----------C-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-e
Q 004475 157 AQLVLGSL-DGTAKDF-----------G-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-V 221 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~l-----------t-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~ 221 (751)
..|+++|+ +|..+.+ . .+ ..+.+++-.+.| .+++. +....+|.+||..+++ .
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivs------------Ggtek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVS------------GGTEKDLRLWDPRTCKKI 206 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEe------------cCcccceEEeccccccce
Confidence 47888888 5632211 1 11 445566666666 33332 2224679999998653 3
Q ss_pred eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--eece
Q 004475 222 RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDL 299 (751)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~ 299 (751)
..| .....++|.+-.++||.+ ++-++ ..+.|.++++. .+.-..+ ....
T Consensus 207 mkL-------------rGHTdNVr~ll~~dDGt~-~ls~s------------SDgtIrlWdLg----qQrCl~T~~vH~e 256 (735)
T KOG0308|consen 207 MKL-------------RGHTDNVRVLLVNDDGTR-LLSAS------------SDGTIRLWDLG----QQRCLATYIVHKE 256 (735)
T ss_pred eee-------------eccccceEEEEEcCCCCe-EeecC------------CCceEEeeecc----ccceeeeEEeccC
Confidence 333 344567889999999999 55544 33678888883 3222211 1111
Q ss_pred eEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 300 RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 300 ~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.+- ..-+|+=+.+|++. ....|++.++.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~----rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGG----RDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecC----CCCcEEecccCCc
Confidence 122 33345555555533 3457888887764
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.3 Score=35.04 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=31.0
Q ss_pred hheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEec
Q 004475 153 YYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 153 ~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~ 195 (751)
....+.|+.+|. +++.+.|.+. ....+++.|||+++|+++...
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 335689999999 6677666665 556689999999999998544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=4.7 Score=40.94 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=69.9
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc-ccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
-..+|...|..|+.+ +..--||.++.+++..+.++...... .. ..+.+..+|+| .|+|+....+-..
T Consensus 118 LGl~f~~~ggdL~Va----------DAYlGL~~V~p~g~~a~~l~~~~~G~~~k-f~N~ldI~~~g-~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 118 LGIRFDKKGGDLYVA----------DAYLGLLKVGPEGGLAELLADEAEGKPFK-FLNDLDIDPEG-VVYFTDSSSKYDR 185 (376)
T ss_pred ceEEeccCCCeEEEE----------ecceeeEEECCCCCcceeccccccCeeee-ecCceeEcCCC-eEEEeccccccch
Confidence 345677777655443 55577889999999988887654321 11 23467778855 5888733211110
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (751)
|.+. ...+.....+.+..+|. +...+.|.+. .-...++.|||+.+++
T Consensus 186 -----------------------rd~~--------~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 186 -----------------------RDFV--------FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVL 234 (376)
T ss_pred -----------------------hheE--------EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEE
Confidence 0000 00111113357888888 4455555555 4445799999999999
Q ss_pred EEEec
Q 004475 191 ITSMH 195 (751)
Q Consensus 191 ~~~~~ 195 (751)
+....
T Consensus 235 ~~Et~ 239 (376)
T KOG1520|consen 235 VAETT 239 (376)
T ss_pred EEeec
Confidence 97543
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.1 Score=47.41 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=78.7
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcc-cCCCCccCCCCchHHH---HHHhCCeEEEE
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQV-RGSPNEFSGMTPTSSL---IFLARRFAVLA 559 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~G~~v~~ 559 (751)
+.+....+..+..|++.... .+. ..|+||++-|||.++.=. |.+ .-+|-....-+..+.. .+- +--.++.
T Consensus 49 v~v~~~~~~~LFYwf~eS~~-~P~---~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWn-k~aNiLf 122 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESEN-NPE---TDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWN-KEANILF 122 (454)
T ss_pred EECCCCCCceEEEEEEEccC-CCC---CCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCcccc-ccccEEE
Confidence 44444456667777775442 222 369999999998665322 211 1122111110000000 011 1122333
Q ss_pred cCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----C-Cc
Q 004475 560 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A-----P-HL 625 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~----~-----p-~~ 625 (751)
.+.+-+.|++-+.... .-....++|...++ +|+.+.+..-.+.+.|.|-|++|+....+|.. + | --
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 3444455543322211 11234455555555 77777777777899999999999777666542 2 1 14
Q ss_pred eeEEEEccCCCC
Q 004475 626 FCCGIARSGSYN 637 (751)
Q Consensus 626 ~~~~v~~~~~~d 637 (751)
++++++..|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 789998888765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.51 Score=50.93 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=49.2
Q ss_pred eeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
-|++|||.+ ++.. .|++. ...+....|+|=|.+.|-- ....++-++|...........+...
T Consensus 93 tiK~wDlee----Ak~vrtLtgh--~~~~~sv~f~P~~~~~a~g----------Stdtd~~iwD~Rk~Gc~~~~~s~~~- 155 (825)
T KOG0267|consen 93 TIKVWDLEE----AKIVRTLTGH--LLNITSVDFHPYGEFFASG----------STDTDLKIWDIRKKGCSHTYKSHTR- 155 (825)
T ss_pred ceeeeehhh----hhhhhhhhcc--ccCcceeeeccceEEeccc----------cccccceehhhhccCceeeecCCcc-
Confidence 589999987 6644 45432 1246777899988776331 3446677777653332222222111
Q ss_pred ccceeeeeEEecCCcEEEEe
Q 004475 85 LNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~ 104 (751)
.+..++++|||++++-.
T Consensus 156 ---vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 156 ---VVDVLRLSPDGRWVASG 172 (825)
T ss_pred ---eeEEEeecCCCceeecc
Confidence 36688999999998865
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.33 Score=51.16 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=54.0
Q ss_pred hHHHHHHhCCeEE----EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004475 545 TSSLIFLARRFAV----LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 545 ~~~~~~~~~G~~v----~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
.+...|.+.||.. ++.+| |.+- ... ........+...|+.+.+.. ..+|.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR~-----~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWRL-----SPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chhh-----chh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566777777764 33322 3321 111 22344566677777776543 479999999999999999887
Q ss_pred hCCC------ceeEEEEccCCC
Q 004475 621 HAPH------LFCCGIARSGSY 636 (751)
Q Consensus 621 ~~p~------~~~~~v~~~~~~ 636 (751)
..+. .+++.|.+++.+
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCC
Confidence 7643 478888888764
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.3 Score=40.42 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 575 DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
..+......++...++-|+... -...++.++|||||..++..++...+-.+..+|++.
T Consensus 84 ~~~A~~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~G 141 (177)
T PF06259_consen 84 PGYARAGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVG 141 (177)
T ss_pred chHHHHHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEEC
Confidence 3455666777777777777654 345699999999999999988877445555555544
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.37 Score=46.73 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+++...++.++++. ...+|.++|||+||.+|..++..
T Consensus 109 ~~~~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 109 SLYNQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHH
Confidence 34455555555555442 24689999999999999988875
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.32 Score=50.29 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
...+++...|+.+.+...-..-+|.++|||+||.+|+.+|..
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 345666677777766542122359999999999999999854
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.43 Score=44.39 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
.....+.|+.++.++-.++.. +...|+|.|||+|+.+...++...
T Consensus 72 a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 72 AFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 345568999999988877643 335899999999999999998764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=11 Score=34.96 Aligned_cols=137 Identities=7% Similarity=0.007 Sum_probs=69.4
Q ss_pred eEEEEEcC-CCC-ceecCCC-ceE-EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSL-DGT-AKDFGTP-AVY-TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~-~G~-~~~lt~~-~~~-~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
..||+.|- .|+ ..-+..+ +.+ .-+.|+ |-.++--+. ...|..||+.-....+........+
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgsq-------------dktirfwdlrv~~~v~~l~~~~~~~ 227 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGSQ-------------DKTIRFWDLRVNSCVNTLDNDFHDG 227 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccCC-------------CceEEEEeeeccceeeeccCcccCC
Confidence 57888887 663 3334333 333 345565 333322211 3456778776433222222221111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCc
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~ 310 (751)
.. +...+..++..|.|+. ++--. ....-.++|+. ++.+ +........+. +.|||..-
T Consensus 228 gl-----essavaav~vdpsgrl-l~sg~------------~dssc~lydir---g~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 228 GL-----ESSAVAAVAVDPSGRL-LASGH------------ADSSCMLYDIR---GGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred Cc-----ccceeEEEEECCCcce-eeecc------------CCCceEEEEee---CCceeeeeCCCccceeEEEeCCCce
Confidence 10 0112446788999985 33311 12344555653 3332 33334455677 99999888
Q ss_pred eEEEeeeecccceeEEEecCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+++..+ ....|-+.|+++.
T Consensus 287 yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 287 YLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred EEEEec----ccceEEEeecccc
Confidence 776544 2346777777774
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.54 Score=51.67 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHcC----CCC---CCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCC
Q 004475 577 FVEQLVSSAEAAVEEVVRRG----VAD---PSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSY 636 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~----~id---~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~ 636 (751)
...+..|-+.+|++++.+.. ..+ |..|+++||||||.+|..++..- ++.+.-++..+.+.
T Consensus 151 ~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 151 ILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 34455666777777776632 223 66799999999999997666542 23344444455443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.76 Score=49.69 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-eeeccCCCCccccceeeeeEEecCCcEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 102 (751)
.+...+|+++-..|+-- ...+.|.++|++.+. .+.||-+... +..+.|+|=|.+.+
T Consensus 72 pIeSl~f~~~E~Llaag----------sasgtiK~wDleeAk~vrtLtgh~~~-----~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAG----------SASGTIKVWDLEEAKIVRTLTGHLLN-----ITSVDFHPYGEFFA 128 (825)
T ss_pred cceeeecCcchhhhccc----------ccCCceeeeehhhhhhhhhhhccccC-----cceeeeccceEEec
Confidence 57778888887777663 344678888888766 4555433321 35667999998764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=24 Score=38.77 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCCcccccceeecCCCCeEEEE
Q 004475 27 YPDGAKINFVSWSPDGKRIAFS 48 (751)
Q Consensus 27 ~~~~~~~~~p~~SPDG~~iaf~ 48 (751)
+|+........|.-..-+||.-
T Consensus 11 iPnnvkL~c~~WNke~gyIAcg 32 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACG 32 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEec
Confidence 6777778899999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.63 E-value=23 Score=38.34 Aligned_cols=193 Identities=12% Similarity=0.177 Sum_probs=110.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe---eeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~---~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.+...-++|--.|+.-... .+..+|| +-++... -.++..+ ++...|-+--++|+..+.+
T Consensus 15 RVKsVd~HPtePw~la~Ly--------nG~V~IW--nyetqtmVksfeV~~~P-------vRa~kfiaRknWiv~GsDD- 76 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY--------NGDVQIW--NYETQTMVKSFEVSEVP-------VRAAKFIARKNWIVTGSDD- 76 (794)
T ss_pred ceeeeecCCCCceEEEeee--------cCeeEEE--ecccceeeeeeeecccc-------hhhheeeeccceEEEecCC-
Confidence 5778899999999877543 3445555 4444432 2233222 4556777777788877543
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPD 185 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpD 185 (751)
.+|.+++. ++ +++....+ ..++.++..|.
T Consensus 77 ------------------------------------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt 108 (794)
T KOG0276|consen 77 ------------------------------------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT 108 (794)
T ss_pred ------------------------------------------------ceEEEEecccceeeEEeeccccceeeeeecCC
Confidence 47777787 66 66666666 77889999999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
--+++.++++. .-.+|-|+-.-...+. |......+-+++|.|....-.+-++
T Consensus 109 ~P~vLtsSDDm-----------~iKlW~we~~wa~~qt-------------feGH~HyVMqv~fnPkD~ntFaS~s---- 160 (794)
T KOG0276|consen 109 LPYVLTSSDDM-----------TIKLWDWENEWACEQT-------------FEGHEHYVMQVAFNPKDPNTFASAS---- 160 (794)
T ss_pred CCeEEecCCcc-----------EEEEeeccCceeeeeE-------------EcCcceEEEEEEecCCCccceeeee----
Confidence 88887765542 2234444433222222 3334455668899998775233322
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc--eEEEeeeecccceeEEEecCCC
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL--ALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
....+-++.+.. .....++..+...+. +.|-+-|. +|+.++ + ...+-+.|-++
T Consensus 161 --------LDrTVKVWslgs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--D--D~tiKvWDyQt 216 (794)
T KOG0276|consen 161 --------LDRTVKVWSLGS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--D--DLTIKVWDYQT 216 (794)
T ss_pred --------ccccEEEEEcCC--CCCceeeeccccCcceEEeccCCCcceEEecC--C--CceEEEeecch
Confidence 234666777631 112234444555555 66655554 444433 2 23455556666
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.60 E-value=11 Score=40.20 Aligned_cols=115 Identities=13% Similarity=0.219 Sum_probs=64.5
Q ss_pred eEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-e------ecc
Q 004475 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-E------LCD 226 (751)
Q Consensus 157 ~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~------l~~ 226 (751)
..||+++| .| =..++... +.+..+..++-...|++-.. .+.+..||+..+... . +..
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~-------------~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE-------------DGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEeccc-------------CceEEEecchhhhhheeeecccccCC
Confidence 67899999 66 23334323 55666777777776665432 335667888765432 1 112
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee--EE-E
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FS-V 303 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-~ 303 (751)
.++.... ..+..+.|+-||-. +.+-. ..+.++++|+- ...+-.+..+... +. +
T Consensus 222 ~pg~~~~--------~svTal~F~d~gL~-~aVGt------------s~G~v~iyDLR---a~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 222 HPGGDAA--------PSVTALKFRDDGLH-VAVGT------------STGSVLIYDLR---ASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred Ccccccc--------CcceEEEecCCcee-EEeec------------cCCcEEEEEcc---cCCceeecccCCccceeee
Confidence 2222221 23668999999877 44432 23688899885 3444444443332 33 6
Q ss_pred EEecC
Q 004475 304 SWCDD 308 (751)
Q Consensus 304 ~~spd 308 (751)
.|-+.
T Consensus 278 ~~~~~ 282 (703)
T KOG2321|consen 278 DWQDT 282 (703)
T ss_pred ccccc
Confidence 67443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.41 E-value=17 Score=38.90 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC-
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK- 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG- 253 (751)
.....++|.|||+.|+..+. ...|++++..++....+...+... ......++.+++++||=
T Consensus 30 ~~Pw~maflPDG~llVtER~-------------~G~I~~v~~~~~~~~~~~~l~~v~-----~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERA-------------TGKILRVNPETGEVKVVFTLPEIV-----NDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCceEEEEcCCCeEEEEEec-------------CCEEEEEeCCCCceeeeecCCcee-----ccCCCCceeeEEECCCcc
Confidence 45668999999965544321 135778877655443332222110 01124566789999884
Q ss_pred ----CceEEEEEeccCCCCccccCcccceeeccCCCCCC--CCceEeEe-e---ceeE-E-EEEecCCceEEEee
Q 004475 254 ----PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG--EKPEILHK-L---DLRF-S-VSWCDDSLALVNET 316 (751)
Q Consensus 254 ----~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~-~---~~~~-~-~~~spdg~~l~~~~ 316 (751)
+..||+.......... ......|.++.++..+. ...+.|.. . ..+. . +.|.|||+ |+++.
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~--~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~ 163 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKE--LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTI 163 (454)
T ss_pred ccCCCcEEEEEEeccCCCCC--ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEE
Confidence 2224444322211110 01234666665531111 11233332 2 1122 3 88999997 55544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.6 Score=43.15 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred EEEEEcC---CCCc---eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE-eCCCc-----eeeee
Q 004475 158 QLVLGSL---DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW-TTDGK-----LVREL 224 (751)
Q Consensus 158 ~l~~~~~---~G~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~-d~~~~-----~~~~l 224 (751)
.|++++- +|+. +.+.+. .....+++.+|| |+++.. ..|+++ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 4532 344433 445688999999 665532 246655 44321 22333
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC--------ccccCcccceeeccCCCCCCCCceEeEe
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA--------NVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
........ .........+.|.|||+ ||++........ .......+.+++++.+ ++..+.+..
T Consensus 112 ~~~~~~~~-----~~~~~~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd---g~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQI-----NNHHHSLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD---GGKLRVVAH 181 (367)
T ss_pred EEccCCCC-----CcccccccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEecC---CCeEEEEec
Confidence 22111100 00123355789999996 666443211100 0011223578888875 545554443
Q ss_pred eceeEE-EEEecCCceE
Q 004475 297 LDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l 312 (751)
.-.... ++|+|+|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 332233 8899988753
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=18 Score=39.18 Aligned_cols=58 Identities=7% Similarity=0.086 Sum_probs=32.8
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
.-|.+|+.... .+.||.+++.+....+..++.+.....+ ... -..||||.+|+-.+.+
T Consensus 281 ssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf--~vk--s~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 281 SSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSF--YVK--SELSPDDCSLLSGSSD 338 (720)
T ss_pred CCCCeEEEEec----CCcEEEEeccccCcCchhhccCccccee--eee--eecCCCCceEeccCCC
Confidence 34577765552 3579999987753333333333222111 011 2368999999888854
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.85 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=25.9
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 521 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg 521 (751)
..++.|+..+.+.||..+...-+.+.+.......++|+|++.||-
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 356789999999999888877776655233334468999999994
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.42 Score=48.73 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.+++.+.|+.+.+...-...+|.+.|||+||.+|..+|..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3444555555555432223469999999999999998864
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.72 E-value=9.9 Score=39.14 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=35.1
Q ss_pred eEEeeeeCCCCceEEEEEecCCcc-cccccCCCceeEEEEeCCCceeeeeccCCCC---CCCCCccCCccCCCceeeeec
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYS-YKVPCARFSQKVQVWTTDGKLVRELCDLPPA---EDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~sp 251 (751)
.-..++|.||| .|+++..+.... ...........|.+++.+++-.. ..+.. ...+..+...-.+...++|.|
T Consensus 115 ~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~---dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 115 NGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA---DNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp -EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T---TSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCC---CCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34579999999 666665443321 11111222456888888765221 11111 001122222334455789999
Q ss_pred C-CC
Q 004475 252 D-KP 254 (751)
Q Consensus 252 d-G~ 254 (751)
. |+
T Consensus 191 ~tg~ 194 (331)
T PF07995_consen 191 NTGR 194 (331)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8 54
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.50 E-value=16 Score=34.48 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=71.2
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE--EEEecCCceEEEeeeecccceeE
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS--VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~spdg~~l~~~~~~~~~~~~l 325 (751)
..+|||++ . .-...+.++.. -...+.||.+-+ +.++..+.. ...++ ++|+.|.+.++|.- +.+.++
T Consensus 115 kvdP~Gry-y-~GtMad~~~~l--e~~~g~Ly~~~~----~h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iD---sln~~V 182 (310)
T KOG4499|consen 115 KVDPDGRY-Y-GGTMADFGDDL--EPIGGELYSWLA----GHQVELIWN-CVGISNGLAWDSDAKKFYYID---SLNYEV 182 (310)
T ss_pred ccCCCCce-e-eeeeccccccc--cccccEEEEecc----CCCceeeeh-hccCCccccccccCcEEEEEc---cCceEE
Confidence 67899997 2 22223323221 123468888876 345544433 33444 89999999998866 334566
Q ss_pred --EEecCCCCC-CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 326 --WLVCPGSKD-VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 326 --~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
|-+|..++. +.++.+.+..-..- . -..-|||..| +.+|.+++....|. .+.++|+.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~----~---e~~~PDGm~I-------D~eG~L~Va~~ng~-------~V~~~dp~ 241 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQP----F---ESLEPDGMTI-------DTEGNLYVATFNGG-------TVQKVDPT 241 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCC----c---CCCCCCcceE-------ccCCcEEEEEecCc-------EEEEECCC
Confidence 777787762 33444544322110 0 1135677654 23344444433333 68888988
Q ss_pred CCceeE
Q 004475 403 TGSKER 408 (751)
Q Consensus 403 ~g~~~~ 408 (751)
+|+.-.
T Consensus 242 tGK~L~ 247 (310)
T KOG4499|consen 242 TGKILL 247 (310)
T ss_pred CCcEEE
Confidence 887643
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.36 E-value=12 Score=38.49 Aligned_cols=142 Identities=13% Similarity=0.188 Sum_probs=88.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+||+++ |+..+.... .+..++...|.|--..+.-.. .+...+.+.|... +-.. +..-.
T Consensus 266 ~TV~lWD~~~----g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsG---------s~D~~V~l~D~R~--~~~s--~~~wk 327 (463)
T KOG0270|consen 266 KTVKLWDVDT----GKPKSSITH-HGKKVQTLEWHPYEPSVLLSG---------SYDGTVALKDCRD--PSNS--GKEWK 327 (463)
T ss_pred ceEEEEEcCC----CCcceehhh-cCCceeEEEecCCCceEEEec---------cccceEEeeeccC--cccc--CceEE
Confidence 4689999999 998887632 344799999999887777654 4456777777542 0000 00011
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
+.+.+..++|.|-....+|.+.+. +.|+-.|+
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tdd------------------------------------------------G~v~~~D~ 359 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDD------------------------------------------------GTVYYFDI 359 (463)
T ss_pred eccceEEEEecCCCceeEEEecCC------------------------------------------------ceEEeeec
Confidence 122366788998888887774321 35666666
Q ss_pred --CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 165 --DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 165 --~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
.| ....+.-+ ..+..+++++--..++.+... ...+.+|+.+....+.+
T Consensus 360 R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~------------d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 360 RNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST------------DKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CCCCCceeEEEeccCCcceEEecCCCCcceeeccc------------cceEEEEeecCCCCccc
Confidence 34 23344444 678888888888777776433 23466777765555444
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.45 Score=49.14 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
...+.+++++|.+.+.-++++|.|.|.|+||.-++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 344668899998886667889999999999999987653
|
|
| >PLN02571 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.52 Score=48.85 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
+++...|+.+.++..-..-+|.++|||+||.+|..+|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 344444444444322112379999999999999998864
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.16 E-value=29 Score=37.10 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=52.2
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-------eEe-eceeEE-EEEecCC----
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-------LHK-LDLRFS-VSWCDDS---- 309 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------l~~-~~~~~~-~~~spdg---- 309 (751)
..+.++|.|||+ +++++. ..++|++++.+ +..... ... ..+.+. ++++||-
T Consensus 31 ~Pw~maflPDG~--llVtER-----------~~G~I~~v~~~---~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 31 KPWALLWGPDNQ--LWVTER-----------ATGKILRVNPE---TGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CceEEEEcCCCe--EEEEEe-----------cCCEEEEEeCC---CCceeeeecCCceeccCCCCceeeEEECCCccccC
Confidence 356889999996 555541 12577777643 211111 111 233344 7888774
Q ss_pred --ceEEEee--eecc----cceeEEEecCCCC---CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 310 --LALVNET--WYKT----SQTRTWLVCPGSK---DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 310 --~~l~~~~--~~~~----~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++|++.. .... ....|.++.++.. ....+.+........ .+ ....++|.|||+ |++..
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H-~GgrI~FgPDG~-LYVs~ 163 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DH-NGGRLVFGPDGK-IYYTI 163 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-Cc-CCceEEECCCCc-EEEEE
Confidence 3444432 1111 2356777765421 112233332211110 11 111277999996 55544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.08 E-value=34 Score=37.69 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=41.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~ 75 (751)
.+++|++.. +..++.-+. ....+....|+|....+.... .+.++|.++|+..+..+
T Consensus 223 ~~~vW~~~~--p~~Pe~~~~---~~s~v~~~~f~p~~p~ll~gG---------~y~GqV~lWD~~~~~~~ 278 (555)
T KOG1587|consen 223 VLLVWSLKN--PNTPELVLE---SPSEVTCLKFCPFDPNLLAGG---------CYNGQVVLWDLRKGSDT 278 (555)
T ss_pred eEEEEecCC--CCCceEEEe---cCCceeEEEeccCCcceEEee---------ccCceEEEEEccCCCCC
Confidence 689999987 544444443 222578889999999988854 56789999999877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 751 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 2e-08 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 1e-05 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 1e-05 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-05 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 2e-05 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 3e-05 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 5e-05 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-04 | ||
| 1xfd_A | 723 | Structure Of A Human A-Type Potassium Channel Accel | 2e-04 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase Family Length = 723 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 751 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 7e-34 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 1e-31 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 4e-28 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 4e-26 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 3e-25 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-22 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 9e-20 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 7e-19 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 2e-18 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 5e-18 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 3e-17 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 4e-17 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 6e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 3e-16 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 1e-15 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 6e-15 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 1e-14 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-14 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 5e-13 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 5e-13 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 8e-13 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 1e-12 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 2e-12 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 3e-12 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 4e-12 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 1e-11 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 5e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-11 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 8e-10 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-09 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 3e-09 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 6e-09 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 3e-05 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 1e-08 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-08 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 2e-08 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 1e-07 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 3e-07 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 3e-07 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 3e-07 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 3e-07 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 3e-07 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 3e-07 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 1e-06 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 2e-06 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 1e-05 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 1e-05 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 2e-04 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 2e-05 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 3e-05 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 7e-05 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 1e-04 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 1e-04 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 1e-04 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 2e-04 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 2e-04 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 2e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 2e-04 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 3e-04 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 3e-04 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 4e-04 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 4e-04 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 4e-04 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 8e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 50/286 (17%), Positives = 88/286 (30%), Gaps = 58/286 (20%)
Query: 482 EMIKYQRKDGVPLTATLYLPPG--YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 539
++ + DG + A +Y P + D P + A+ G P
Sbjct: 392 QIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHG---------GPTSRVPAVL 442
Query: 540 SGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDR--------FVEQL--------V 582
+ R V N + E+L V
Sbjct: 443 DLDVA-----YFTSRGIGVAD-------------VNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----- 637
A + G AD +R+AV G S G + A L ++ CG +
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWA 543
Query: 638 KTLTP----FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693
T + E Y + +P+T A++++ P L++ G D P Q
Sbjct: 544 DGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCP--PEQC 601
Query: 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+RF +A+ G G + E H + +E ++ + +
Sbjct: 602 DRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQV 647
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 47/281 (16%), Positives = 87/281 (30%), Gaps = 59/281 (20%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
++ + DG + + P P + V G P
Sbjct: 334 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVL--------------VHGGPFAEDS 375
Query: 542 MTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDR--------FVEQL--------VSS 584
+ + LA F V+ PN R + ++ +
Sbjct: 376 DSWDTFAASLAAAGFHVVM-------------PNYRGSTGYGEEWRLKIIGDPCGGELED 422
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-----KT 639
AA G+A + + G+SYG +MT L P LF G+A + + +
Sbjct: 423 VSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL 480
Query: 640 LTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM-QAERFFD 698
+ + + SPI H ++IK+P+ +IH + + P+ R
Sbjct: 481 SDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRT---PLKPLLRLMG 537
Query: 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
L G ++P H E+ + ++ +L
Sbjct: 538 ELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQ 578
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 33/267 (12%), Positives = 72/267 (26%), Gaps = 34/267 (12%)
Query: 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN 537
+ I+ L+ TL P G P + + + G
Sbjct: 3 EAKLSSIEIPV-GQDELSGTLLTPTGM--------PGVLFVH--------------GWGG 39
Query: 538 EFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 596
+ + + + Q + +AA +++
Sbjct: 40 SQHHSLVRAR--EAVGLGCICMT-FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLP 96
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS----YNKTLTPFGFQTEFRTL 652
D IAV G SYG +++A L P + + + +++ +
Sbjct: 97 YVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDY 156
Query: 653 WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
+ + + K +L++ E D V + DA + ++
Sbjct: 157 RRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP--HPVMRNYADAFT-NARSLTSRVI 213
Query: 713 PFEHHVYAARENVMHVIWETDRWLQKY 739
H + +E+ WL +
Sbjct: 214 AGADHALSVKEHQQEYTRALIDWLTEM 240
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 42/290 (14%), Positives = 77/290 (26%), Gaps = 67/290 (23%)
Query: 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA--YPEDYKSKDAAGQVRGSPNEFSG 541
+ Y+ +T +P +GP P + Y G +E
Sbjct: 59 LTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYN---------ASYDGEIHEM-- 102
Query: 542 MTPTSSLIFLARRFAVLA----------GPSIPIIGE-------GDKLPNDRFVEQLVSS 584
+ + +A SI G G + + +
Sbjct: 103 ------VNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTL 640
A A+E + D +RI V G S G +T A + N +
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDV 216
Query: 641 TPFGFQTEFR----------TLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFP 690
E T +A + A+++K P+L+ G +D P
Sbjct: 217 ALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVT---P 273
Query: 691 M-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
++ L+ L + + H Y E + ++
Sbjct: 274 PSTVFAAYNHLETK---KELKVYRYFGHEYIPAFQT-----EKLAFFKQI 315
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 39/281 (13%), Positives = 76/281 (27%), Gaps = 41/281 (14%)
Query: 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW--------AYPEDYKSKDAAGQV--- 532
+ + G + L +P ++ LPC+ +P D+ + G +
Sbjct: 71 VTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPHDWLFWPSMGYICFV 126
Query: 533 ---RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589
RG + + P G D P + ++ + A AV
Sbjct: 127 MDTRGQGSGWLKGDTPD----YPEGPVDPQYPGFMTRGILD--PRTYYYRRVFTDAVRAV 180
Query: 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-------- 641
E D RI + G S G + + A + +
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP 240
Query: 642 ----PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697
+T + A + K P L G +D+ + P F
Sbjct: 241 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDN---ICPP--STVF 295
Query: 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
A + + + P+ +H + + + +K
Sbjct: 296 AAYNYYAGPKEIRIYPYNNHEGGGSFQAVEQVKFLKKLFEK 336
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 1e-22
Identities = 42/264 (15%), Positives = 65/264 (24%), Gaps = 51/264 (19%)
Query: 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW--------AYPEDYKSKDAAG----- 530
+ + G + A P +G P L D + AAG
Sbjct: 85 LYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNSGDWNDKLNYVAAGFTVVA 139
Query: 531 -QVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589
VRG S L G I G D ++ +
Sbjct: 140 MDVRGQGG--------QSQDVGGVTGNTLNGH--IIRGLDDD-ADNMLFRHIFLDTAQLA 188
Query: 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-------- 641
V+ D R+ V G S G ++ A P + +
Sbjct: 189 GIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKN 248
Query: 642 ----PFGFQTEFRTLWEATNVYIE----MSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693
+ F E N + A +IK +L+ G +D P
Sbjct: 249 AYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVC---P--P 303
Query: 694 ERFFDALKGHGALSRLVLLPFEHH 717
F A + + + P H
Sbjct: 304 STVFAAYNNIQSKKDIKVYPDYGH 327
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 9e-20
Identities = 68/300 (22%), Positives = 109/300 (36%), Gaps = 49/300 (16%)
Query: 463 SSQITNFPHPYPTLASLQK--EMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAY 519
+ + + HPY Q+ E DG PL ++ P G+D +K P + Y
Sbjct: 467 ENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVY 524
Query: 520 PEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA---------GPSI--PIIG 567
+ V + + G +LA++ + V + G + G
Sbjct: 525 GGPA-----SQTV---TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYG 576
Query: 568 E-GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 626
+ G D QL V + ++ DP+RI V G S G +MT LLA A +
Sbjct: 577 KQGTVEVAD----QL-----RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSY 627
Query: 627 CCGIARSGSYNKTL--TPFGFQTE--FRTLWEATNVYIEMSPITHANKIKKPILIIHGEV 682
CG+A + + L + + TE Y E +TH ++ P+L+IHG
Sbjct: 628 ACGVAGAPVTDWGLYDSHY---TERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMA 684
Query: 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH--VYAARENVMHVIWETDRWLQKYC 740
DD V + AL+ G L+ P H A + V +L +
Sbjct: 685 DDNV--LFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADALHRYRVAE---AFLGRCL 739
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-19
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 20/162 (12%)
Query: 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-----SYNKTLT 641
V+ + + D RI V G SYG FMT +L+ +F G+A Y
Sbjct: 555 CGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA---I 611
Query: 642 PFGFQTE--FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699
+ E F E Y + + A +K +++IHG +D V + F DA
Sbjct: 612 MY---GERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVV--VWQHSLLFLDA 666
Query: 700 LKGHGALSRLVLLPFEHH--VYAARENVMHVIWETDRWLQKY 739
+ P H + R ++ I R+ +
Sbjct: 667 CVKARTYPDYYVYPSHEHNVMGPDRVHLYETIT---RYFTDH 705
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-18
Identities = 84/546 (15%), Positives = 160/546 (29%), Gaps = 115/546 (21%)
Query: 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF------SVSWCDDSLALVNETWYK 319
G N V + + +I + V+W + W +
Sbjct: 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL--QWLR 279
Query: 320 TSQT--RTWLVCPGSKDVAPRVLFDRVFENVYSD-------PGSPMMTRTSTGTNVIAKI 370
Q + L R + + P P T I
Sbjct: 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII-S 338
Query: 371 KKENDEQIY-ILLNGRGFTP--EGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 427
+E I ++ + T +G + + + + I + + +
Sbjct: 339 NEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398
Query: 428 QGEEDINLNQLKILTSKE-----SKTEITQYHILSW-----PL---------KKSSQITN 468
+ ++ + S ++ +Y+ L PL K + +
Sbjct: 399 IDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458
Query: 469 FPHPYPTLASLQ--KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE----- 521
L ++Q + + + + + LPP +D+SK P L Y
Sbjct: 459 NSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQK 516
Query: 522 -------DYKSKDAAGQ--------VRGSPN---EFSGMTPTSSLIFLARRFAVLAGPSI 563
++ + A+ + RGS + RR
Sbjct: 517 ADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI--------NRRL-------- 560
Query: 564 PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 623
G D Q+ A + + G D RIA+ G SYG ++T+ +L
Sbjct: 561 -----GTFEVED----QI-----EAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGS 606
Query: 624 HLFCCGIARSG-----SYNKTLTPFGFQTE----FRTLWEATNVYIEMSPITHANKIK-K 673
+F CGIA + Y+ + + TE T + + Y + ++ A K
Sbjct: 607 GVFKCGIAVAPVSRWEYYD---SVY---TERYMGLPTPEDNLDHYRNSTVMSRAENFKQV 660
Query: 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETD 733
L+IHG DD V Q+ + AL G + + E H A+ H+
Sbjct: 661 EYLLIHGTADDNV--HFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMS 718
Query: 734 RWLQKY 739
++++
Sbjct: 719 HFIKQC 724
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 5e-18
Identities = 58/286 (20%), Positives = 97/286 (33%), Gaps = 75/286 (26%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE------------DYKSKDAAGQ------ 531
D + L + LPP +D+SK P L Y ++ S A+ +
Sbjct: 476 DEITLWYKMILPPQFDRSK--KYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIAL 533
Query: 532 --VRGSPN---EFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAE 586
RG+ + R+ G D Q+
Sbjct: 534 VDGRGTAFQGDKLLYAV--------YRKL-------------GVYEVED----QI----- 563
Query: 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-----SYNKTLT 641
AV + + G D RIA+ G SYG ++++ LA LF CGIA + Y +
Sbjct: 564 TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYA---S 620
Query: 642 PFGFQTE--FRTLWEATN--VYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERF 696
+ TE + N Y + + A + L+IHG DD V + +
Sbjct: 621 VY---TERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNV--HFQNSAQI 675
Query: 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742
AL + + ++H + + H+ +L++ C S
Sbjct: 676 AKALVNAQVDFQAMWYSDQNH-GLSGLSTNHLYTHMTHFLKQ-CFS 719
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-17
Identities = 105/771 (13%), Positives = 201/771 (26%), Gaps = 175/771 (22%)
Query: 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF---ESPDICLNAV 88
+ SPD + FS V+ S ++ G+ + L S A
Sbjct: 62 RAIRYEISPDREYALFSYNVEPIYQHSY-TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAG 120
Query: 89 FG------SFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
+G F++ NN I+ + + S ++ +I + ++D L
Sbjct: 121 WGPKGQQLIFIFENN----IYYCAHVGKQAIRVV---------STGKEGVIYNGLSDWL- 166
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
Y+E + + A SPD +
Sbjct: 167 ---YEEEILK-----------------------THIAHWWSPDGTRLA------------ 188
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
+ V + + + + K
Sbjct: 189 ----------YAAINDSRVPI---------MELPTYTGSIYPTVKPYHYPKA-------- 221
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321
G N +S I P E P+ + + V W + V TW +
Sbjct: 222 ---GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV--TWLNRA 276
Query: 322 QTRTWLV-CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTN--VIAKIKKENDEQI 378
Q + L C + V + D + + + G I I + +
Sbjct: 277 QNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334
Query: 379 YIL--------LNGRGFTP--EGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428
Y + + G+ + + + + S + +
Sbjct: 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394
Query: 429 GEEDINLNQLKILT---------SKESKTEITQYHILSWPL---------KKSSQITNFP 470
G + ++ S + + P+ KK +
Sbjct: 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNE 454
Query: 471 HPYPTLASLQKEMIKYQ--RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 528
H + Q ++Y+ D L + P + + P L
Sbjct: 455 HVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT--HYPLLLVVDGTPG----- 507
Query: 529 AGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA----GPSIPIIGEGDKL---PNDRFVEQ 580
+ V +F T + ++ V+ G +G KL R
Sbjct: 508 SQSVA---EKFEVSWET---VMVSSHGAVVVKCDGRGSG----FQGTKLLHEVRRRLGLL 557
Query: 581 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSG-- 634
AV +++ D +R+AV G YG +++ ++L F CG A S
Sbjct: 558 EEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPIT 617
Query: 635 ---SYNKTLTPFGFQTE--FRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGL 688
Y + F +E Y + +++ LIIH D+K+
Sbjct: 618 DFKLYA---SAF---SERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKI-- 669
Query: 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
L A L + P E H + + H+ + +
Sbjct: 670 HFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVEC 720
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 4e-17
Identities = 46/263 (17%), Positives = 79/263 (30%), Gaps = 47/263 (17%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
DG+P+ + +P G GP P + + + E M
Sbjct: 135 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMENL---- 174
Query: 550 FLARRFAVLA--GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGG 607
L R A GP + E ++ D E+ S A V+ + + I V G
Sbjct: 175 VLDRGMATATFDGPGQGEMFEYKRIAGDY--EKYTS---AVVDLLTKLEAIRNDAIGVLG 229
Query: 608 HSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGFQTEFRTLW------EATN 657
S G A P L C I+ G + TP ++ +
Sbjct: 230 RSLGGNYALKSAACEPRLAAC-ISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLH 288
Query: 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
V+ + ++I P I+HG D+ + + + + LV+ H
Sbjct: 289 VHAALETRDVLSQIACPTYILHGVHDE---VPLSFVDTVLELVPAEHL--NLVVEKDGDH 343
Query: 718 V-YAARENVMHVIWETDRWLQKY 739
+ + + WL
Sbjct: 344 CCHNLGIRPRLEMAD---WLYDV 363
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 6e-17
Identities = 38/274 (13%), Positives = 69/274 (25%), Gaps = 63/274 (22%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCL-----FWAYPEDYKSKDAAGQVRGSPNEFSGMTP 544
+ +TA L+L D P P + + D M
Sbjct: 176 EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSLQTD-------------------MWR 211
Query: 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIA 604
A+L +P +G K P +L A + E+ D R+
Sbjct: 212 LFRDHLAKHDIAMLT-VDMPSVGYSSKYPLTEDYSRLHQ---AVLNELFSIPYVDHHRVG 267
Query: 605 VGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--------PFGFQTEFRTLWEAT 656
+ G +G L + + P + + +
Sbjct: 268 LIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKS 327
Query: 657 NVYIEM------------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704
V I + K K PIL + E D + P + +G
Sbjct: 328 VVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGD---PVSPYSDNQMVAFFSTYG 384
Query: 705 ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
++ + E + + + WL+
Sbjct: 385 KAKKI----SSKTITQGYEQSLDLAIK---WLED 411
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 3e-16
Identities = 44/251 (17%), Positives = 73/251 (29%), Gaps = 48/251 (19%)
Query: 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFW--AYPEDYKSKDAAGQVRGSPNEFSGMTPTS 546
+ GV + L++P + + PL + + E D QV G+ G +
Sbjct: 153 ETGVEIPYRLFVPKDVNPDRKYPL--VVFLHGAGER--GTDNYLQVAGNR----GAVVWA 204
Query: 547 SLIFLARR-FAVLAGPSIPIIG----EGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS 601
+ VLA P P N E+ + + + +++ D +
Sbjct: 205 QPRYQVVHPCFVLA-PQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDEN 263
Query: 602 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661
RI + G S G + T + P LF I G +
Sbjct: 264 RIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD------------------------ 299
Query: 662 MSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720
++ +IK PI + H E D V + L G R
Sbjct: 300 ---VSKVERIKDIPIWVFHAEDDPVV--PVENSRVLVKKLAEIGGKVRYTEYEKGFMEKH 354
Query: 721 ARENVMHVIWE 731
+ H W
Sbjct: 355 GWDP--HGSWI 363
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 1e-15
Identities = 40/199 (20%), Positives = 63/199 (31%), Gaps = 20/199 (10%)
Query: 550 FLARRFAVLAGPSIPIIGEGDKLP----NDRFVEQLVSSAEAAVEEVVR----RGVADPS 601
+ R F +LA P GE + P + R+VE++ A EE R
Sbjct: 47 YAERGFLLLA-FDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGL 105
Query: 602 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661
+ + G S GAF+ LLA + L +
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQV-----VEDPGVLALYQ 160
Query: 662 MSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720
P T P+L +HG D V + E+ +AL+ H RL E +
Sbjct: 161 APPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGRLARFVEEGAGHT 218
Query: 721 ARENVMHVIWETDRWLQKY 739
+ +L+ +
Sbjct: 219 LTPLMAR---VGLAFLEHW 234
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 6e-15
Identities = 45/285 (15%), Positives = 74/285 (25%), Gaps = 72/285 (25%)
Query: 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA--YPEDYKSKDAAGQVRGSPNEFSGMT 543
Y DG+ L A L +P P + + +
Sbjct: 5 YIDCDGIKLNAYLDMPKN----NPEKCPLCIIIHGFTGHSEERHIVAVQE---------- 50
Query: 544 PTSSLIFLARR-FAVLA------GPSIPIIGEGDKLPNDRFVEQLVSS----AEAAVEEV 592
L A L G S +G F + + A V+
Sbjct: 51 ------TLNEIGVATLRADMYGHGKS-----DGK------FEDHTLFKWLTNILAVVDYA 93
Query: 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN------------KTL 640
+ I + GHS G A + I S +
Sbjct: 94 KKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKF 151
Query: 641 TPFGFQTEFRTL--WEATNVYIE----MSPITHANKIKKPILIIHGEVDDKVGLFPMQAE 694
P E + Y+ + +K KP+LI+HG+ D+ V +
Sbjct: 152 DPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVP--YEASV 209
Query: 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
F K +LV +P + H Y + V ++ +
Sbjct: 210 AFSKQYKNC----KLVTIPGDTHCYDHHLEL--VTEAVKEFMLEQ 248
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 41/230 (17%), Positives = 68/230 (29%), Gaps = 52/230 (22%)
Query: 550 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHS 609
+ VL +P G+G N A AA+ ++ A +IA+ G S
Sbjct: 183 GWEHDYNVLM-VDLP--GQGK---NPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFS 236
Query: 610 YGAFMTAHLLAHAPHLFCCGIARSGSYN-------------------------------- 637
G + TA + + IA + Y+
Sbjct: 237 GGGYFTAQAVEKDKRIKAW-IASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNK 295
Query: 638 ---KTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAE 694
L + +Q + N +E + I NKI P L + G +D Q++
Sbjct: 296 VAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSE--LMRQSQ 353
Query: 695 RFFDALKGHGALSRLVLLP-----FEHHVYAARENVMHVIWETDRWLQKY 739
+D K G L H + + ++E WL
Sbjct: 354 VLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFE---WLNHI 400
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 44/226 (19%)
Query: 498 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557
L+LP G P+ + + + + +S + L++ +AV
Sbjct: 55 LFLPEG------TPVGLFVFVH--------GGYWMAFDKSSWSHLAVG----ALSKGWAV 96
Query: 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617
+ + P R E AV + I + GHS G + A
Sbjct: 97 -------AMPSYELCPEVRISEI-TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVAR 145
Query: 618 LLAHAPHLFCCG------IARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKI 671
+L G + S + L P + + I SP+ N+
Sbjct: 146 MLDPEVLPEAVGARIRNVVPISPLSD--LRPLLRTSMNEKFKMDADAAIAESPVEMQNRY 203
Query: 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
+ + G + F QA +A V+ +HH
Sbjct: 204 DAKVTVWVGGAERPA--FLDQAIWLVEAWDADH-----VIAFEKHH 242
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 5e-13
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 16/154 (10%)
Query: 578 VEQLVSSAEAAVEEVVRRGVA-DPSRIAVGGHSYGAFMTAHLLAHA-------PHLFCCG 629
+EQL++ + + S + GH GA + A +L +
Sbjct: 128 LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWAL 187
Query: 630 IARSGSYN-KTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK-----PILIIHGEVD 683
I G Y+ + L+ L +SP+ I ++ E D
Sbjct: 188 IFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHD 247
Query: 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
F Q+ + D L+ G + L H
Sbjct: 248 STT--FIEQSRHYADVLRKKGYKASFTLFKGYDH 279
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 5e-13
Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 33/243 (13%)
Query: 498 LYLPPG--YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555
+LPPG + G + P + G G+ + + F
Sbjct: 129 HFLPPGVWRQSVRAGRVRA-TLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGF 184
Query: 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 615
A LA + LP + + E AV +++ I + G S GA +
Sbjct: 185 ATLA----LAYYNFEDLP-NNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
Query: 616 AHLLAHAPHLFCCGIARSG--------------------SYNKTLTPFGFQTEFRTLWEA 655
+ + ++ + F + + A
Sbjct: 240 LSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNA 299
Query: 656 TNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPF 714
+ + K + PIL+I G+ DD + A+ + L+ HG +++ P
Sbjct: 300 LVGGYKNPSMIPIEKAQGPILLIVGQ-DDHNWRSELYAQTVSERLQAHGKEKPQIICYPG 358
Query: 715 EHH 717
H
Sbjct: 359 TGH 361
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 8e-13
Identities = 31/293 (10%), Positives = 66/293 (22%), Gaps = 53/293 (18%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
E ++ T + +P + P+P + + AG+ +P
Sbjct: 93 EKWEFYPLPKCVSTFLVLIPDN----INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDR 148
Query: 542 MTPTSSLI--FLARR-FAVLAGPSIPIIGEGDKLPNDRFVE------------------- 579
+ + +A + G+ +R+
Sbjct: 149 YKDPKLTQALNFVKEGYIAVA---VDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWS 205
Query: 580 ---QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-------APHLFCCG 629
+ + + RI V G S G L + F C
Sbjct: 206 YLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQ 265
Query: 630 IARSGSYNKTLTP---FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKV 686
F R L I A +PI++ G +D
Sbjct: 266 TQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDI-VAALAPRPIILTEGGLDR-- 322
Query: 687 GLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
+ + + G + + ++ + + L +
Sbjct: 323 -DLD-LVRKAYAIV---GTPDNVKIYHYKKFSDPDTRKNVEYL---PEGLDRN 367
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 1e-12
Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 31/241 (12%)
Query: 499 YLPPGYDQSK-DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557
+LPPG + P + + G+ G+ + + + FAV
Sbjct: 146 FLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFAV 202
Query: 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617
+A + LP + E A+ ++ + + G S G +
Sbjct: 203 MA----LAYYNYEDLP-KTMETLHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLS 257
Query: 618 LLAHAPHLFCCGIARSGSYN---------KTLTPFGFQTE-----------FRTLWEATN 657
+ + + + N +TL P G + +
Sbjct: 258 MASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPL 317
Query: 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEH 716
+ + + L + G+ DD A L+ HG +++ P
Sbjct: 318 EGPDQKSFIPVERAESTFLFLVGQ-DDHNWKSEFYANEACKRLQAHGRRKPQIICYPETG 376
Query: 717 H 717
H
Sbjct: 377 H 377
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 Length = 223 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-12
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 42/194 (21%)
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG-----DKLPNDRF-VEQLVSSAEA 587
+ +A ++A I E +++ RF + +++ A
Sbjct: 41 VDETTLVPLAR-----RIAPTATLVA-ARGRIPQEDGFRWFERIDPTRFEQKSILAETAA 94
Query: 588 A---VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644
E +R + G+S GA + + L+ P +
Sbjct: 95 FAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRP---------- 144
Query: 645 FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704
+ + + LII G D+ L HG
Sbjct: 145 --------------MPVLDHVPATDLAGIRTLIIAGAADETY---GPFVPALVTLLSRHG 187
Query: 705 ALSRLVLLPFEHHV 718
A ++P H +
Sbjct: 188 AEVDARIIPSGHDI 201
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-12
Identities = 30/291 (10%), Positives = 62/291 (21%), Gaps = 47/291 (16%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
E ++ T + P G +P + + G+
Sbjct: 88 EKWEFYPFPKSVSTFLVLKPEH----LKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTED 143
Query: 542 MTPTSSLI---FLARRFAVLAGPSIPIIGEGDKLPNDR-------------------FVE 579
+ + + +A + D D+ ++
Sbjct: 144 YNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLG 203
Query: 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-------APHLFCCGIAR 632
+ + + RI + G S G L + F C
Sbjct: 204 YTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYNDFLCQTQE 263
Query: 633 SGSYNKTLTP---FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689
F R L Y + A+ +PI+ G +D F
Sbjct: 264 RAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDV-VASLAPRPIIFTEGGLDR---DF 319
Query: 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI---WETDRWLQ 737
A G + A + + ++ + +
Sbjct: 320 R----LVQSAYAASGKPENAEFHHYPKFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 33/205 (16%), Positives = 55/205 (26%), Gaps = 46/205 (22%)
Query: 547 SLIFLARRF---AVLAGPSIPIIGEG-----DKLPNDRF-VEQLVSSAEA---AVEEVVR 594
L+ LA A + ++ G +L F E L+ + ++E +
Sbjct: 53 DLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAAK 112
Query: 595 RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE 654
D + I G+S GA + A LL H + +
Sbjct: 113 EYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHP-------------------- 152
Query: 655 ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGHGALSRLVLLP 713
+ + AN K + I G D +E L+ A +
Sbjct: 153 ----MVPRRGMQLANLAGKSVFIAAGTNDPIC---SSAESEELKVLLENANANVTMHWEN 205
Query: 714 FEHHVYAARENVMHVIWETDRWLQK 738
H + V W K
Sbjct: 206 RGHQL--TMGEVEKAK----EWYDK 224
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 37/179 (20%)
Query: 564 PIIGEGDKLPNDRFVEQLVSSAEA---AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620
+ G G + +E L + V + + D ++ G+S GA + ++
Sbjct: 62 KLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFL 121
Query: 621 HAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHG 680
F IA G K + + +
Sbjct: 122 RGKINFDKIIAFHG------------------------MQLEDFEQTVQLDDKHVFLSYA 157
Query: 681 EVDDKVGLFPMQ-AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
D V P + L+ G + H + +E V+ +WL +
Sbjct: 158 PNDMIV---PQKNFGDLKGDLEDSGCQLEIYESSLGHQL--TQEEVLAAK----KWLTE 207
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 5e-11
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 34/177 (19%)
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-----------------APHLFC 627
A + + +V+ + I + GHS GA +LA +
Sbjct: 100 AVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVK 157
Query: 628 CGIARSGSYN--KTLTPFGFQTEF--------RTLWEATNVYIEMSPITHANKIKKPILI 677
G Y+ + L + F ++E + ++ + +
Sbjct: 158 RVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHL 217
Query: 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH--VYAARENVMHVIWET 732
+H D+ + Q L+ + +L L H VY + V I++
Sbjct: 218 VHSYSDELL--TLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGK-VAKYIFDN 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-11
Identities = 87/681 (12%), Positives = 173/681 (25%), Gaps = 198/681 (29%)
Query: 126 SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPD 185
+ K+I+ D+++ + S + +L V VE
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS------GTLRLFWTL----LSKQEEMVQKFVEEVLR 88
Query: 186 QKYVLITSMHRPYSYKVPCA---RFSQKVQVWTTDG---------------KLVRELCDL 227
Y + S + + P + ++ D KL + L +L
Sbjct: 89 INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 228 PPAEDIPVCYNSVREGM-------------RSISWRADKPSTLYWVEAQDRGDANVEVSP 274
PA+++ + G+ S + ++W+ + + N SP
Sbjct: 148 RPAKNVLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCN---SP 195
Query: 275 RDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334
++ E+L KL + +W S N + + L
Sbjct: 196 ETVL-------------EMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSK 241
Query: 335 VAPRVLFDRVFENVYS-------DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF 387
L V NV + + ++ T+ V + I + +
Sbjct: 242 PYENCLL--VLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 388 TPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED-------INLNQLKI 440
TP+ L +D N +L I
Sbjct: 299 TPDEV---KSLL-----------------------LKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 441 LTS--KESKTEITQY-HILSWPLKKSSQITNFPHPYPTLASLQ-KEMIKYQRKDGVPLTA 496
+ ++ + H+ L + +L L+ E K + V
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIES--------SLNVLEPAEYRKMFDRLSV---- 380
Query: 497 TLYLPPGYDQSKDGPLP----CLFWAYPEDYKSKDAAGQ------VRGSPNEFSGMTPTS 546
P +P L W + V P E T
Sbjct: 381 ---FP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----TI 426
Query: 547 SLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVG 606
S+ + V E + + V+ + D +
Sbjct: 427 SIPSIYLELKVKL--------ENEYALHRSIVDHYNIPKTFDSD--------DLIPPYLD 470
Query: 607 GHSYGAFMTAHLLAHAPHLFCCGIA-RSGSYNKTLTPFGF-QTEFR---TLWEATNVYIE 661
+ Y + H HL R + F F + + R T W A+ +
Sbjct: 471 QYFY------SHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 662 MSPITHANKIKKPILIIHGEVDDKVGL---FPMQAERFFDALKG-HGALSRLVLLPFEHH 717
+ K I + + V F + E + + + L R+ L+ +
Sbjct: 523 T--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEA 578
Query: 718 VYAARENVMHVIWETDRWLQK 738
++ E + +Q+
Sbjct: 579 IFE----------EAHKQVQR 589
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 Length = 251 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 8e-10
Identities = 37/214 (17%), Positives = 63/214 (29%), Gaps = 47/214 (21%)
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG-----DKLPNDRFVEQLVSSAEAA 588
G N+F L + +L+ P + G + + + A
Sbjct: 73 GDENQFFDFGA-----RLLPQATILS-PVGDVSEHGAARFFRRTGEGVYDMVDLERATGK 126
Query: 589 VEEVVR--RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646
+ + ++ R + G S GA + A++L P LF +
Sbjct: 127 MADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHP------------ 174
Query: 647 TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGHGA 705
I P K + +LI GE D P+Q + ++LK G
Sbjct: 175 ------------LIPFEPKISPAKPTRRVLITAGERDPIC---PVQLTKALEESLKAQGG 219
Query: 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
V P H + + V +L Y
Sbjct: 220 TVETVWHPGGHEI--RSGEIDAVR----GFLAAY 247
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNV 658
+P ++ + G S G + A G+ Y T FG+ ++
Sbjct: 117 NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVI--LCYPVTSFTFGWPSDLSHFNFEIEN 174
Query: 659 YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718
E + P I H D+ V + ++ D L H PFE H
Sbjct: 175 ISEYNISEKVTSSTPPTFIWHTADDEGV--PIYNSLKYCDRLSKHQV-------PFEAHF 225
Query: 719 YA 720
+
Sbjct: 226 FE 227
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-09
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNK-----------TLTPFGFQ 646
D RI + G S G + A A + LT GF
Sbjct: 107 DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTA-GFP 165
Query: 647 TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706
T + T + KP + D+ V P+ + ++ A+ H
Sbjct: 166 TTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVP--PINSLKYVQAMLQHQV- 222
Query: 707 SRLVLLPFEHHVYA 720
+H++
Sbjct: 223 ------ATAYHLFG 230
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 47/214 (21%)
Query: 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96
SPDGK+IAF +R +EE VS +W+AD ET +K + E+ +I S W
Sbjct: 65 RISPDGKKIAF-MRANEEKKVS----EIWVADLETLSSKKILEAKNI------RSLEWNE 113
Query: 97 NSTLLIFTIPSSRRDPPKKTMVPL-----GPKIQSNEQKNIII----SRMTDNLLKDEYD 147
+S L+ R D + E+ I S +
Sbjct: 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRF 173
Query: 148 ESLF-----------------DYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190
S Y+ + + ++ V D + +L
Sbjct: 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIY--IWEDGKEEKMFEKVSFYA-VDSDGERIL 230
Query: 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224
+ S+ +++ DGK V +
Sbjct: 231 LYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 29 DGAKINFVS-WSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86
AK ++S G+ +A+ + + + +DN + + I + + + + +
Sbjct: 10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKY--ENTIVIENLKNNARRFIENAT----- 62
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116
+ + F + K +
Sbjct: 63 ----MPRISPDGKKIAFM---RANEEKKVS 85
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 40/230 (17%)
Query: 534 GSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDRFV----EQLVSSAEAA 588
GSPN+ + M L R + V P G G P D + + + AA
Sbjct: 33 GSPNDMNFMAR-----ALQRSGYGVYV-PLFS--GHGTVEPLDILTKGNPDIWWAESSAA 84
Query: 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH------LFCCGIARSGSYNKTLTP 642
V + + +++ V G S G L P +
Sbjct: 85 VAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLK 140
Query: 643 FG------------FQTEFRTLWEATNVYIEMSPITHAN--KIKKPILIIHGEVDDKVGL 688
+ L + + A+ +K+P I D+ V
Sbjct: 141 YAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVD- 199
Query: 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
A + DAL A HV + + ++Q+
Sbjct: 200 -GRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQ 247
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 22/196 (11%), Positives = 46/196 (23%), Gaps = 47/196 (23%)
Query: 550 FLARR-FAVLA-------GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS 601
+L+ F V G S G ++ + +S + +G
Sbjct: 57 YLSTNGFHVFRYDSLHHVGLS-----SGS--IDEFTMTTGKNSLCTVYHWLQTKG---TQ 106
Query: 602 RIAVGGHSYGAFMTAHLLAHAPHL--------------FCCGIARSGSYNKTLTPFGFQT 647
I + S A A+ + L + +
Sbjct: 107 NIGLIAASLSA-RVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDL 165
Query: 648 EFRTLWEATNVYIEM----------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697
+F + V++ S + P++ DD V +
Sbjct: 166 DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEEVYDML 223
Query: 698 DALKGHGALSRLVLLP 713
++ +L L
Sbjct: 224 AHIRTGHC--KLYSLL 237
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Length = 403 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 23/142 (16%), Positives = 36/142 (25%), Gaps = 13/142 (9%)
Query: 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554
++ P E + V S + P
Sbjct: 183 RVWIFTTGDVTAE---ERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAV-------- 231
Query: 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 614
VL + N F + V+ + R V G S+G
Sbjct: 232 -YVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPF-SDRADRTVVAGQSFGGLS 289
Query: 615 TAHLLAHAPHLFCCGIARSGSY 636
+ H P F C +++SGSY
Sbjct: 290 ALYAGLHWPERFGCVLSQSGSY 311
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 26/132 (19%), Positives = 38/132 (28%), Gaps = 19/132 (14%)
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG----------SYNKTLTPFGFQTE 648
DP +I G S G + A + + + Y GF +
Sbjct: 122 DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPLLGFPKD 181
Query: 649 FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708
TL T E++ H N +P I D V + AL
Sbjct: 182 DATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIV--PATNTLAYATALATAKI--- 236
Query: 709 LVLLPFEHHVYA 720
P+E HV+
Sbjct: 237 ----PYELHVFK 244
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 42/259 (16%), Positives = 67/259 (25%), Gaps = 66/259 (25%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
V L L +P G + +A +G R SP
Sbjct: 20 GEVKLKGNLVIPNG-------ATGIVLFA--------HGSGSSRYSPR----------NR 54
Query: 550 FLARR-----FAVLAGPSIPIIGEGDKLPNDRF----VEQLVSSAEAAVEEVVRRGVADP 600
++A A L + E + R + L S A + +
Sbjct: 55 YVAEVLQQAGLATLL-IDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQH 113
Query: 601 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYI 660
++ G S G A P ++R G +
Sbjct: 114 LKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPD----------------------- 150
Query: 661 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720
+ +K P L+I G D V E + L RLV++P H++
Sbjct: 151 --LAPSALPHVKAPTLLIVGGYDLPV---IAMNEDALEQL---QTSKRLVIIPRASHLFE 202
Query: 721 ARENVMHVIWETDRWLQKY 739
+ V W Y
Sbjct: 203 EPGALTAVAQLASEWFMHY 221
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 46/235 (19%)
Query: 534 GSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEG---DKLPNDRFVEQLVSSAEAAV 589
G+P+ + A+ + V P + G G + + F V+S E
Sbjct: 51 GTPHSMRPLAE-----AYAKAGYTVCL-PRLK--GHGTHYEDMERTTF-HDWVASVEEGY 101
Query: 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLTPFGF 645
+ +R I V G S G +T +L H P + + +T G
Sbjct: 102 GWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGE 157
Query: 646 QTEFRTLWEATNVYIEMSPITH---------------------ANKIKKPILIIHGEVDD 684
+ + ++ + + ++I P LI + D
Sbjct: 158 LPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDH 217
Query: 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
V P A+ F + +V L +HV + +I + + K+
Sbjct: 218 VVP--PGNADIIFQGIS--STEKEIVRLRNSYHVATLDYDQPMIIERSLEFFAKH 268
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 39/231 (16%)
Query: 534 GSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592
G+ + + FL + + A P G + + E +
Sbjct: 27 GNSADVRMLGR-----FLESKGYTCHA-PIYKGHGVPPEELVHTGPDDWWQDVMNGYEFL 80
Query: 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLTPFGFQTE 648
+G +IAV G S G + L P C + + E
Sbjct: 81 KNKG---YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYARE 137
Query: 649 FRTLWEATNVYIEMSPIT---------------------HANKIKKPILIIHGEVDDKVG 687
++ + IE H + I P ++ D+ +
Sbjct: 138 YKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN 197
Query: 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
P A ++ ++ + ++ HV + + + +L+
Sbjct: 198 --PDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLES 244
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* Length = 226 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 36/166 (21%), Positives = 55/166 (33%), Gaps = 39/166 (23%)
Query: 579 EQLVSSAE---AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL-LAHAPHLFCCGIARSG 634
+QL +SA+ A ++E +G+ RI + G S G + H +A S
Sbjct: 92 DQLNASADQVIALIDEQRAKGI-AAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALST 150
Query: 635 SYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK--PILIIHGEVDDKVGLFPMQ 692
Y ++ K P+L +HG DD V P
Sbjct: 151 ------------------------YAPTFDDLALDERHKRIPVLHLHGSQDDVV--DPAL 184
Query: 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
DAL+ G P H V + E + + WL+K
Sbjct: 185 GRAAHDALQAQGVEVGWHDYPMGHEV--SLEEIHDIG----AWLRK 224
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 42/251 (16%), Positives = 71/251 (28%), Gaps = 60/251 (23%)
Query: 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL 551
T+Y P + + + G+ + + + +
Sbjct: 81 GFGGGTIYYPRE-----NNTYGAIAISPG-----------YTGTQSSIAWLGE-----RI 119
Query: 552 ARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAE--AAVEEVVRRGVADPSRIAVGGH 608
A F V+A I D QL ++ + R D SR+AV GH
Sbjct: 120 ASHGFVVIA-----IDTNTTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGH 174
Query: 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA 668
S G LA I LTP+ +R
Sbjct: 175 SMGGG-GTLRLASQRPDLKAAIP--------LTPWHLNKSWRD----------------- 208
Query: 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 728
I P LII E D + ++ F++++ + L H N
Sbjct: 209 --ITVPTLIIGAEYDTIAS-VTLHSKPFYNSIPS-PTDKAYLELDGASHFAPNITNKTIG 264
Query: 729 IWETDRWLQKY 739
++ WL+++
Sbjct: 265 MYSVA-WLKRF 274
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 28/172 (16%)
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN--KTLTP 642
A A + V I + GH+ G + + L P L + + +
Sbjct: 105 ANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALE 162
Query: 643 FGFQTEFRTLWEATNVYI---------------EMSPITHANKIKKPILIIHGEVDDKVG 687
Q + ++ + + KP+ +IHG D V
Sbjct: 163 GNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVV- 221
Query: 688 LFPMQ-AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
++++ + L L+ H ++ + + T +LQ
Sbjct: 222 --SPNASKKYDQIYQNS----TLHLIEGADHCFSDSYQ-KNAVNLTTDFLQN 266
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 13/130 (10%)
Query: 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI----------ARSGSYNKTLTPFGFQT 647
+P+ ++V G + G +M A L +F G AR+ Y +
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSI 67
Query: 648 EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAER-FFDALKGHGAL 706
T + + AN ++ I + G D VG M + +
Sbjct: 68 T--TPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANV 125
Query: 707 SRLVLLPFEH 716
S + H
Sbjct: 126 SYVTTTGAVH 135
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 28/235 (11%), Positives = 55/235 (23%), Gaps = 50/235 (21%)
Query: 470 PHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA--YPEDYKSKD 527
P+P +A+ + + +Y P Q P + W
Sbjct: 8 GAPFPAVANFDRSGPYTVSSQSEGPSCRIYRPRDLGQG-GVRHPVILWGNGTG------- 59
Query: 528 AAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEA 587
P+ ++G+ L A V+A G G ++ E
Sbjct: 60 ------AGPSTYAGL-----LSHWASHGFVVAAAETSNAGTGREMLACLDYLV----REN 104
Query: 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT 647
G + R+ GHS G + + P+
Sbjct: 105 DTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAGQDTR--VRTTAP--------IQPYTLGL 154
Query: 648 EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702
+ + P+ ++ G D + A+ +
Sbjct: 155 GH--------------DSASQRRQQGPMFLMSGGGDTIAFPYLN-AQPVYRRANV 194
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 Length = 262 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 43/275 (15%), Positives = 81/275 (29%), Gaps = 61/275 (22%)
Query: 472 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ 531
PY T + ++ G T+Y P DG + +
Sbjct: 22 PYATSQTSVSSLVASGFGGG-----TIYYPTSTA---DGTFGAVVISPG----------- 62
Query: 532 VRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590
+ + + P LA + F V I D QL+S+ + +
Sbjct: 63 FTAYQSSIAWLGP-----RLASQGFVVFT-----IDTNTTLDQPDSRGRQLLSALDYLTQ 112
Query: 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFR 650
R D +R+ V GHS G + A + I LT + +
Sbjct: 113 RSSVRTRVDATRLGVMGHSMGGG-GSLEAAKSRTSLKAAIP--------LTGWNTDKTWP 163
Query: 651 TLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710
+++ P L++ + D ++ F+++L G +
Sbjct: 164 -------------------ELRTPTLVVGADGDTVAP-VATHSKPFYESLPG-SLDKAYL 202
Query: 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTS 745
L H + + WL+++ S+T
Sbjct: 203 ELRGASHFTPNTSDTTIAKYSIS-WLKRFIDSDTR 236
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLN 86
+ IN + PDG++IA V N + ++ + E GE K + F
Sbjct: 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTA----DLYFYNGENGEIKRITYFSGKSTGRR 106
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPP 113
+ + L+I + P
Sbjct: 107 MFTDVAGFDPDGNLIIS---TDAMQPF 130
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 31/304 (10%), Positives = 78/304 (25%), Gaps = 29/304 (9%)
Query: 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74
D G + + +F + S + + IA+ + + + + D E +
Sbjct: 406 DLETGKPTVIERSREAMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464
Query: 75 KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII 134
+ + + +S L + S R P V L + +
Sbjct: 465 FAATTEN-----SHDYAPAFDADSKNLYYL--SYRSLDPSPDRVVLNFSFEVVSK----- 512
Query: 135 SRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSM 194
L+ + + + S G + + P ++I
Sbjct: 513 -PFVIPLIPGSPNPTKLVPRSM-----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 566
Query: 195 HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254
Y VP K V D+ + V + + AD+
Sbjct: 567 SSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRK 620
Query: 255 STLYWVEAQ----DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSL 310
+ + + + + + E ++ + ++ ++++
Sbjct: 621 TVMVRKDDGKIYTFPLEKPEDERTVETDKRPLVSSIHEEFLQMYDEAWKLARDNYWNEAV 680
Query: 311 ALVN 314
A
Sbjct: 681 AKEI 684
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 45/191 (23%)
Query: 552 ARRFA-----VLA-------GPSIPIIGEGD---KLPNDRFVEQLVSSAEAAVEEVVRRG 596
RR A +A G +L + Q+++ + R G
Sbjct: 52 CRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG 111
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656
D R+ + G +G +T AH P L +A G + +
Sbjct: 112 G-DAHRLLITGFCWGGRITWLYAAHNPQLKA-AVAWYGKLVGEKSLNSPK---------- 159
Query: 657 NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716
P+ A + P+L ++G D + E AL+ A E
Sbjct: 160 ------HPVDIAVDLNAPVLGLYGAKDASIP--QDTVETMRQALRAANA-------TAEI 204
Query: 717 HVYAARENVMH 727
VY H
Sbjct: 205 VVY---PEADH 212
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* Length = 218 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 35/165 (21%), Positives = 52/165 (31%), Gaps = 34/165 (20%)
Query: 578 VEQLVSSAE---AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL-LAHAPHLFCCGIARS 633
+E+L SA+ +E R G+ D SRI + G S G + H + IA S
Sbjct: 81 LEELEVSAKMVTDLIEAQKRTGI-DASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALS 139
Query: 634 GSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693
A++ + P L +HG+ DD V
Sbjct: 140 TYAPT---------------------FGDELELSASQQRIPALCLHGQYDDVV--QNAMG 176
Query: 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
F+ LK G P H V + + + WL
Sbjct: 177 RSAFEHLKSRGVTVTWQEYPMGHEV--LPQEIHDIG----AWLAA 215
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 29/269 (10%), Positives = 58/269 (21%), Gaps = 69/269 (25%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
DG + + P + + + + +
Sbjct: 39 DGRTVPGVYWSPAE-----GSSDRLVLLGHG--------GTTHKKVE-----YIEQVAKL 80
Query: 550 FLARRFAVLAGPSIPIIGE-------------------GDKLPNDRFVEQLVSSAEAAVE 590
+ R + +A P GE +++ AA++
Sbjct: 81 LVGRGISAMA-IDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALD 139
Query: 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFR 650
+ P G S G M + A + + G
Sbjct: 140 FI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKRIKVALLGLMGVEGVNGEDL------- 190
Query: 651 TLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710
+ A ++ P+ + D+ V F L L
Sbjct: 191 --------------VRLAPQVTCPVRYLLQWDDELV--SLQSGLELFGKLGTKQK--TLH 232
Query: 711 LLPFEHHVYAARENVMHVIWETDRWLQKY 739
+ P +H E T +L +
Sbjct: 233 VNPGKHSAVPTWEM----FAGTVDYLDQR 257
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 45/259 (17%)
Query: 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554
A +YLPPGY + K L+ G GS N++ +++I
Sbjct: 47 PARVYLPPGYSKDK--KYSVLYLL----------HGI-GGSENDWFEGGGRANVI-ADNL 92
Query: 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR------RGVADPSRIAVGGH 608
A + I+ + + + + ++ D A+ G
Sbjct: 93 IAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGL 152
Query: 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA 668
S G + ++ F S + N + + F +A A
Sbjct: 153 SMGGGQSFNIGLTNLDKFAYIGPISAAPN----TYPNERLFPDGGKA------------A 196
Query: 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMH 727
+ K + I G D L +R + + ++ H +
Sbjct: 197 REKLKLLFIACGTND---SLIGF-GQRVHEYCVANNINHVYWLIQGGGHDFNVWKPG--- 249
Query: 728 VIWETDRWLQKYCLSNTSD 746
+W + + L+ +
Sbjct: 250 -LWNFLQMADEAGLTRDGN 267
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 12/150 (8%)
Query: 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG--IARSGSY--NKTLTPFGFQTEF 649
+ +P++++ A L +A +G + +P
Sbjct: 128 KARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTR 187
Query: 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 709
+ + + I P+ I+ G D V A + + L L
Sbjct: 188 ALMEDGRANRVMAGMI----DTGCPVHILQGMADPDVP--YQHALKLVEHLPADD--VVL 239
Query: 710 VLLPFEHHVYAARENVMHVIWETDRWLQKY 739
L+ H + +++ + ++
Sbjct: 240 TLVRDGDHRLSRPQDIDRMRNAIRAMIEPR 269
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 30/306 (9%), Positives = 67/306 (21%), Gaps = 97/306 (31%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFW----AYPEDYKSKDAAGQVRGSPNEFSGMTPT 545
D L T+ + + + G N+ S
Sbjct: 12 DAFALPYTIIKAKN-----QPTKGVIVYIHGGGL------------MFGKANDLSPQY-- 52
Query: 546 SSLIFLARRFAV------LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+ L + + L P + A+ + + +
Sbjct: 53 --IDILTEHYDLIQLSYRLL-------------PEVSLDCII-EDVYASFDAIQSQ--YS 94
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSGSYNKTLTPFGFQTEFRTLWEA 655
I G S GA+++ + F + KT + +
Sbjct: 95 NCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETM 154
Query: 656 TNVYIEMSPITHANKIKK--------------------------------------PILI 677
+P+ ++ P+ I
Sbjct: 155 IAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFI 214
Query: 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRW 735
H D V + ++E + + S + H + R N + + + +
Sbjct: 215 AHCNGDYDVPV--EESEHIMNHVPH----STFERVNKNEHDFDRRPNDEAITIYRKVVDF 268
Query: 736 LQKYCL 741
L +
Sbjct: 269 LNAITM 274
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 37/156 (23%)
Query: 578 VEQLVSSAE---AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634
+E + + ++E V+ G+ +RI +GG S G M HL A S
Sbjct: 93 LESIDVMCQVLTDLIDEEVKSGI-KKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSS 151
Query: 635 SYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-A 693
L +A+ VY + +N + + HG D+ V A
Sbjct: 152 F----------------LNKASAVYQALQK---SNGVLPELFQCHGTADELV---LHSWA 189
Query: 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729
E LK G + H + NV H +
Sbjct: 190 EETNSMLKSLGV-------TTKFHSF---PNVYHEL 215
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} Length = 331 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 33/186 (17%)
Query: 497 TLYLPPGYDQSKDGPLPCL-----------------FWAYPEDYKSKDAAGQVRGSPNEF 539
+ LP GY QS + P + F + + + N
Sbjct: 29 VIALPEGYAQSLEA-YPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHNTNRM 87
Query: 540 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
TPT +L+ + P G + F++ + ++E +R +
Sbjct: 88 RDYTPTHTLVLPSGNKG---NPQYQHTGGAGR-----FLDFIEKELAPSIESQLR---TN 136
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY---NKTLTPFGFQTEFRTLWEAT 656
+ GHS+G + L LF +A S + + + ++
Sbjct: 137 GIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQK 195
Query: 657 NVYIEM 662
+++ +
Sbjct: 196 QLFMAI 201
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 Length = 232 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 32/160 (20%)
Query: 573 PNDRFVEQLVSSAEAAVEEVVRRGVA---DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 629
P+ + E + A ++ ++ + V +RI +GG S G ++ +
Sbjct: 82 PDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGV 141
Query: 630 IARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689
A S W PI AN+ IL HG+ D V
Sbjct: 142 TALSC------------------WLPLRASFPQGPIGGANR-DISILQCHGDCDPLV--P 180
Query: 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729
M + LK + + Y E +MH
Sbjct: 181 LMFGSLTVEKLKTLVNPANV-----TFKTY---EGMMHSS 212
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-04
Identities = 27/209 (12%), Positives = 51/209 (24%), Gaps = 15/209 (7%)
Query: 459 PLKKSSQITNFPHPYPTLASLQKEMIKYQRKDG----VPLTATLYLPPGYDQSKDGPLPC 514
L SQ + P +++ Y + L +P G GP P
Sbjct: 24 MLASGSQPASGSQPEQAKCNVRVAEFTYATIGVEGEPATASGVLLIPGGER--CSGPYPL 81
Query: 515 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA----GPSIPIIGEGD 570
L W +P + + ++ + V+ G
Sbjct: 82 LGWGHPTEALRAQEQ----AKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
Query: 571 KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630
L + + + AA + ++ + G+S G
Sbjct: 138 YLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEF 197
Query: 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVY 659
S P+ + F W +N
Sbjct: 198 HLVASAP-ISGPYALEQTFLDSWSGSNAV 225
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 41/166 (24%)
Query: 472 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCL-----FWAYPEDYKSK 526
+P A ++ + + + G+ L A LYLP LP + F A E
Sbjct: 59 TFPLSAKVEHRKVTFANRYGITLAADLYLPKNRG---GDRLPAIVIGGPFGAVKEQSSGL 115
Query: 527 DAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA------GPSIPIIGEGDKLPN-DRFVE 579
A R F LA G S G+ + + D E
Sbjct: 116 YAQT-------------------MAERGFVTLAFDPSYTGES---GGQPRNVASPDINTE 153
Query: 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 625
AAV+ + + RI V G M + +A +
Sbjct: 154 D----FSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRV 195
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} Length = 275 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 28/150 (18%)
Query: 575 DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634
F + + +E+ D + + GH G H+L + F S
Sbjct: 129 HNFFTFIEEELKPQIEKNFE---IDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSP 185
Query: 635 SYNKTLTPFGFQTEFRTLWEATNVYIEMS----PITHANKIKKPILIIHGEVDDKVGLFP 690
S W +E + K + + + G ++ +
Sbjct: 186 SI----------------WWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREH--MV 227
Query: 691 MQAERFFDALKGHGALS---RLVLLPFEHH 717
+ A + L + E+H
Sbjct: 228 VGANELSERLLQVNHDKLKFKFYEAEGENH 257
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* Length = 278 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 33/276 (11%), Positives = 66/276 (23%), Gaps = 55/276 (19%)
Query: 466 ITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLF-----WAYP 520
I + + ++ + + R V +P + P L+
Sbjct: 3 IADKGSVFYHFSATSFDSVDGTRHYRV----WTAVPNTTAPAS--GYPILYMLDGNAVMD 56
Query: 521 EDYKSKDAAGQVRGSPNEFSGM------TPTSSLIFLARRFAVLAGPSIPIIGEGDKLP- 573
++ +E + T+ L R + +
Sbjct: 57 R------LDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRF 110
Query: 574 ------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627
++ F + L + VE+ + D R + GHSYG F
Sbjct: 111 SRKSGGSNNFRQLLETRIAPKVEQGLN---IDRQRRGLWGHSYGGLFVLDSWLS-SSYFR 166
Query: 628 CGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHG--EVDDK 685
+ S S + ++ + K + I+ G D
Sbjct: 167 SYYSASPSL---------------GRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDN 211
Query: 686 VGLFPM----QAERFFDALKGHGALSRLVLLPFEHH 717
+ + LK G + P H
Sbjct: 212 RETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGH 247
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* Length = 297 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 37/280 (13%), Positives = 69/280 (24%), Gaps = 49/280 (17%)
Query: 465 QITNFPHPYPTLASLQKEMIKYQ-RKDGVPLTATLYLPPGYDQSKDGPLPCLFWA--YPE 521
Q P Y ++K + +YLP GYD +K + E
Sbjct: 23 QYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNK--KYNIFYLMHGGGE 80
Query: 522 DYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII-----GEGDKLPNDR 576
+ + FS +++ A++ G P+I G
Sbjct: 81 NENTI------------FSNDVKLQNIL----DHAIMNGELEPLIVVTPTFNGGNCTAQN 124
Query: 577 FVEQLVSSAEAAVEEVVR---------RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627
F ++ + VE A GG + G T +++ +
Sbjct: 125 FYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVA 184
Query: 628 CGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 687
+ SG Y +P + +K + + G D
Sbjct: 185 YFMPLSGDYWYGNSPQDKANSIAEAINRSG----------LSKREYFVFAATGSEDI--- 231
Query: 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 727
+A+K + + H
Sbjct: 232 -AYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATH 270
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA 67
++RL PEK G+ N SPDG A S +V+ K +++
Sbjct: 63 LLYRLSLAGDPSPEKVDTGFATIC-NNDHGISPDGALYAISDKVEFG------KSAIYLL 115
Query: 68 DAETGEAKPLFE---------SPD 82
+ G + + + SPD
Sbjct: 116 PSTGGTPRLMTKNLPSYWHGWSPD 139
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* Length = 560 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 32/289 (11%), Positives = 68/289 (23%), Gaps = 58/289 (20%)
Query: 489 KDGVPLTATLYLPPGYDQSKDGPLPCLF--------WAYPEDYKSKDAAGQVRGSPNEFS 540
+DG L ++ P DG P + + F+
Sbjct: 49 RDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFT 103
Query: 541 GMTPTSSLIFLARRFAVL------AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR 594
++ + V+ + S +G + ++ +E
Sbjct: 104 PEESPDPGFWVPNDYVVVKVALRGSDKS-----KGV---LSPWSKREAEDYYEVIEWAAN 155
Query: 595 RGVADPSRIAVGGHSYGAFMTAHLLAHAPH-------------LFCCGIARSGSYNKTLT 641
+ ++ I G SY A + + P ++ G +
Sbjct: 156 QSWSNG-NIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFY 214
Query: 642 PFGFQT------------EFRTLWEATNVYIEM--SPITHANKIKKPILIIHGEVDDKVG 687
F Q + + ++ + ++IK P+L G
Sbjct: 215 RFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWST--QG 272
Query: 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736
L + F + YA + D +L
Sbjct: 273 LHNRGSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSF-FDFYL 320
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 751 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.95 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.9 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.9 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.89 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.88 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.87 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.87 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.87 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.87 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.87 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.87 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.87 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.87 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.87 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.86 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.86 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.86 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.85 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.85 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.85 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.85 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.85 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.85 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.85 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.84 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.84 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.84 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.84 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.84 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.84 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.84 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.83 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.83 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.83 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.83 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.83 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.83 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.82 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.82 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.82 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.82 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.81 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.81 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.81 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.81 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.81 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.81 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.81 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.8 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.8 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.79 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.79 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.79 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.79 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.79 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.78 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.78 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.78 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.78 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.78 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.77 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.77 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.76 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.76 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.75 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.75 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.75 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.75 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.75 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.75 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.75 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.74 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.74 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.74 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.74 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.74 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.72 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.72 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.72 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.72 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.72 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.72 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.72 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.72 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.72 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.72 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.72 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.72 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.71 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.71 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.71 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.71 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.7 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.7 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.7 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.7 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.7 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.7 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.7 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.7 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.7 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.7 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.7 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.7 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.7 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.69 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.69 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.69 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.69 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.69 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.69 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.69 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.69 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.68 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.68 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.68 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.68 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.68 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.68 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.68 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.68 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.68 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.67 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.67 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.67 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.67 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.66 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.66 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.66 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.66 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.66 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.66 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.66 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.66 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.66 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.66 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.66 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.65 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.65 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.65 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.65 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.65 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.65 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.65 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.65 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.64 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.63 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.63 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.63 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.63 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.63 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.63 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.63 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.63 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.63 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.63 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.62 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.62 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.62 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.62 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.62 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.62 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.62 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.62 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.62 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.62 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.62 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.62 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.62 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.61 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.61 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.61 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.61 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.61 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.61 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.61 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.61 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.61 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.61 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.61 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.6 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.6 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.6 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.6 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.6 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.59 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.58 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.58 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.58 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.58 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.58 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.58 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.58 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.58 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.57 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.57 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.57 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.57 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.57 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.57 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.57 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.57 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.56 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.56 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.56 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.56 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.55 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.55 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.55 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.55 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.55 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.55 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.54 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.54 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.54 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.54 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.54 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.53 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.53 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.52 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.52 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.52 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.52 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.52 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.51 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.51 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.51 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.51 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.5 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.5 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.5 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.5 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.5 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.5 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.49 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.49 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.49 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.49 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.49 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.48 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.48 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.48 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.47 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.47 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.47 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.47 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.47 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.47 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.46 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.46 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.46 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.45 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.18 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.45 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.44 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.43 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.41 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.41 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.41 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.41 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.39 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.39 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.38 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.38 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.38 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.38 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.38 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.37 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.37 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.37 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.36 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.36 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.36 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.36 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.36 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.35 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.35 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.35 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.34 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.33 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.32 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.32 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.32 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.32 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.31 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.31 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.3 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.3 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.29 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.28 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.28 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.28 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.28 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.27 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.27 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.26 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.25 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.25 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.24 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.23 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.23 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.22 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.21 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.21 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.19 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.18 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.18 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.18 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.17 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.15 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.15 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.14 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.14 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.14 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.14 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.13 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.12 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.12 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.1 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.1 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.1 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.07 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.07 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.07 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.07 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.06 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.06 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.06 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.03 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.02 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.01 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.0 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.0 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.99 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.99 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.97 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.97 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.97 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.95 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.95 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.93 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.9 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.89 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.88 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.87 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.86 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.86 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.85 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.85 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.84 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.83 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.79 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.79 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.78 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.77 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.77 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.75 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.75 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.74 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.73 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.72 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.72 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.71 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.7 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.7 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.7 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.7 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.69 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.69 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.68 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.68 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.68 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.66 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.64 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.64 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.63 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.62 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.59 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.58 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.58 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.57 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.56 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.56 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.56 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.55 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.54 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.51 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.51 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.48 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.48 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.45 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.45 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.43 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.41 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.4 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.38 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.35 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.35 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.35 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.35 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.34 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.32 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.29 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.28 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.27 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.25 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.23 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.16 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.11 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.08 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.06 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.03 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.99 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.97 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.97 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.95 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.89 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.86 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.78 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.75 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.73 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.69 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.64 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.58 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.56 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.5 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.49 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=498.64 Aligned_cols=608 Identities=14% Similarity=0.074 Sum_probs=420.4
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcc--cc--cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KI--NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~--~~--~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|+++++.+ |+.+.+....... .+ ..++|||||++|||...... ........++|++|+++|+.++|+...
T Consensus 37 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-~~r~~~~~~~~~~d~~~~~~~~l~~~~ 111 (740)
T 4a5s_A 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIYDLNKRQLITEERIP 111 (740)
T ss_dssp EEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECCC----CceEEEEechhhhhhcccccceEECCCCCEEEEEECCee-eEEEccceEEEEEECCCCcEEEcccCC
Confidence 699999999 8877664221111 12 23899999999999875211 111244589999999999999997655
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .+..++|||||++|+|... .+||+
T Consensus 112 ~-----~~~~~~~SPdG~~la~~~~--------------------------------------------------~~i~~ 136 (740)
T 4a5s_A 112 N-----NTQWVTWSPVGHKLAYVWN--------------------------------------------------NDIYV 136 (740)
T ss_dssp T-----TEEEEEECSSTTCEEEEET--------------------------------------------------TEEEE
T ss_pred C-----cceeeEECCCCCEEEEEEC--------------------------------------------------CeEEE
Confidence 4 3678899999999999843 48999
Q ss_pred EcC-CCCceecCCCc---eE-----------------EeeeeCCCCceEEEEEecCCccc--cc----------------
Q 004475 162 GSL-DGTAKDFGTPA---VY-----------------TAVEPSPDQKYVLITSMHRPYSY--KV---------------- 202 (751)
Q Consensus 162 ~~~-~G~~~~lt~~~---~~-----------------~~~~~SpDG~~i~~~~~~~~~~~--~~---------------- 202 (751)
+++ +|+.++||..+ .+ ..+.|||||++|+|.+.+..... ..
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999 66888887641 11 23889999999999876543100 00
Q ss_pred ---ccCCC--ceeEEEEeCCC---c---eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccc
Q 004475 203 ---PCARF--SQKVQVWTTDG---K---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (751)
Q Consensus 203 ---~~~~~--~~~l~~~d~~~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~ 271 (751)
..+.. ...|++||+++ + +.+++.... .+......+..++|||||+. +++....
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~wspdg~~-~~~~~~r-------- 280 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA-------SMLIGDHYLCDVTWATQERI-SLQWLRR-------- 280 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH-------HHHTSCEEEEEEEEEETTEE-EEEEEES--------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc-------cCCCCCeEEEEEEEeCCCeE-EEEEeCC--------
Confidence 00111 13699999988 6 444442210 00011223557899999996 5543311
Q ss_pred cCcccceeeccCCCCCCCC-------ceEeE-eece---e---EE-EEEecCCceEE-EeeeecccceeEEEecCCCCCC
Q 004475 272 VSPRDIIYTQPAEPAEGEK-------PEILH-KLDL---R---FS-VSWCDDSLALV-NETWYKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~-------~~~l~-~~~~---~---~~-~~~spdg~~l~-~~~~~~~~~~~l~~~~~~~~~~ 335 (751)
......|++++++ ++. ...+. .... . .. +.|||||+.|+ +.+. .++..+||++++++ +
T Consensus 281 ~~~~~~i~~~d~~---tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-~~G~~~l~~~~~~~--~ 354 (740)
T 4a5s_A 281 IQNYSVMDICDYD---ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-EEGYRHICYFQIDK--K 354 (740)
T ss_dssp STTEEEEEEEEEE---TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-TTSCEEEEEEETTC--S
T ss_pred CCCEEEEEEEECC---CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc-CCCceEEEEEECCC--C
Confidence 1123478999886 333 23332 2111 1 34 89999999998 5543 35568999999998 4
Q ss_pred cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee-EEeec-c
Q 004475 336 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWES-N 413 (751)
Q Consensus 336 ~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~-~ 413 (751)
..++|+.....-. ..+++||+.|+|.+... .....+.+||+++++++..+ +|+.. .
T Consensus 355 ~~~~lT~g~~~v~--------~~~~~d~~~i~f~~~~~--------------~~~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 355 DCTFITKGTWEVI--------GIEALTSDYLYYISNEY--------------KGMPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp SCEESCCSSSCEE--------EEEEECSSEEEEEESCG--------------GGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred ceEecccCCEEEE--------EEEEEeCCEEEEEEecC--------------CCCCceeEEEEEECCCCCcceeeccccC
Confidence 6678886643321 22457799999988320 01234679999999876554 44321 0
Q ss_pred chhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCC----CCCccCCceEEEEEEcC
Q 004475 414 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP----YPTLASLQKEMIKYQRK 489 (751)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~----~~~~~~~~~e~i~~~~~ 489 (751)
.. ......++|||||+.++++..++. ++.+++++..+++..+++..+.. .........+.+++ ..
T Consensus 413 ~~---------~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~ 481 (740)
T 4a5s_A 413 PE---------RCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-IL 481 (740)
T ss_dssp TT---------TBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EE
T ss_pred CC---------CCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-cc
Confidence 00 011234689999999999998877 88999999988887777655421 12233334677777 67
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~ 568 (751)
+|..+.+++++|+++++.+ ++|+||++||++.... ....+.......++ ++||+|+++++++..+.
T Consensus 482 dg~~l~~~~~~P~~~~~~~--~~P~vv~~HGg~~~~~-----------~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~ 548 (740)
T 4a5s_A 482 NETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQK-----------ADTVFRLNWATYLASTENIIVASFDGRGSGYQ 548 (740)
T ss_dssp TTEEEEEEEEECTTCCTTS--CEEEEEECCCCTTCCC-----------CCCCCCCSHHHHHHHTTCCEEEEECCTTCSSS
T ss_pred CCeEEEEEEEeCCCCCCCC--CccEEEEECCCCcccc-----------cccccCcCHHHHHHhcCCeEEEEEcCCCCCcC
Confidence 8899999999999875443 5999999999863211 01111222345556 59999999666543332
Q ss_pred CCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc
Q 004475 569 GDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF 645 (751)
Q Consensus 569 g~~~~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~ 645 (751)
|.... ...+....++|+.+++++|.+++.+|++||+|+||||||++|+.++.++|++|+++|+.+|+.++......+
T Consensus 549 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~ 628 (740)
T 4a5s_A 549 GDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVY 628 (740)
T ss_dssp CHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHH
T ss_pred ChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHH
Confidence 22110 111223458999999999998888999999999999999999999999999999999999998754322111
Q ss_pred ccc-ccc--chhhHHHHHhcCcccccCCCCC-CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc
Q 004475 646 QTE-FRT--LWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA 721 (751)
Q Consensus 646 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 721 (751)
... ... .+...+.|...++...++++++ |+|++||+.|..|| +.++.+++++|.+++++++++++|+++|.+..
T Consensus 629 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~ 706 (740)
T 4a5s_A 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAMWYTDEDHGIAS 706 (740)
T ss_dssp HHHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTCCS
T ss_pred HHHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCcCCC
Confidence 100 112 2456677888899999999986 99999999999999 99999999999999999999999999999866
Q ss_pred cccHHHHHHHHHHHHHHHhcCC
Q 004475 722 RENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 722 ~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
.+....+...+.+||.++++..
T Consensus 707 ~~~~~~~~~~i~~fl~~~l~~~ 728 (740)
T 4a5s_A 707 STAHQHIYTHMSHFIKQCFSLP 728 (740)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred CccHHHHHHHHHHHHHHHcCCC
Confidence 6777889999999999999753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=481.02 Aligned_cols=588 Identities=16% Similarity=0.187 Sum_probs=415.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCc-----------------------ccccceeecCCCCeEEEEEeecccccccCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----------------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCK 61 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~-----------------------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~ 61 (751)
..|+++|+.+ |+.+++...... ..+..++|||||++|+|.+.
T Consensus 64 ~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~----------- 128 (741)
T 2ecf_A 64 LDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG----------- 128 (741)
T ss_dssp EEEEEEETTT----CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-----------
T ss_pred cEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-----------
Confidence 4799999999 988877632211 12688999999999999641
Q ss_pred eeEEEEEcCCC---CeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 62 LRVWIADAETG---EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 62 ~~l~i~~~~~g---~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.+||+++++++ +.++++.... .+..++|||||++|+|.+.
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~-------------------------------- 171 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRG-------------------------------- 171 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEET--------------------------------
T ss_pred CcEEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeC--------------------------------
Confidence 79999999999 8888876543 3678899999999999842
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ce-----------------EEeeeeCCCCceEEEEEecCCcc
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AV-----------------YTAVEPSPDQKYVLITSMHRPYS 199 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~-----------------~~~~~~SpDG~~i~~~~~~~~~~ 199 (751)
.+|+++++ +|+.++++.. .. +..++|||||++|++.+.+....
T Consensus 172 ------------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 172 ------------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPV 233 (741)
T ss_dssp ------------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred ------------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCC
Confidence 37999999 6677777654 21 36789999999999987653210
Q ss_pred -------------------cccc-cCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEE
Q 004475 200 -------------------YKVP-CARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (751)
Q Consensus 200 -------------------~~~~-~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~ 258 (751)
+... .......|++||+++ ++.+.+.... .....+..++| |||++ |+
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~-pDg~~-l~ 301 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK----------EQDIYLARVNW-RDPQH-LS 301 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS----------CSSEEEEEEEE-EETTE-EE
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC----------CcceEEEEEEe-CCCCE-EE
Confidence 0000 000123799999988 7766553221 11123557899 99999 66
Q ss_pred EEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece-----eEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-----RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+..... ......|++++++ ++....+..... ... +.|||||+ +++.+.. .+..+||.++.++
T Consensus 302 ~~~~~~-------~~~~~~i~~~d~~---~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~-~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 302 FQRQSR-------DQKKLDLVEVTLA---SNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER-TGFQHLYRIDSKG 369 (741)
T ss_dssp EEEEET-------TSSEEEEEEEETT---TCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT-TSSCEEEEECSSS
T ss_pred EEEecc-------cCCeEEEEEEECC---CCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC-CCccEEEEEcCCC
Confidence 654211 1123589999986 445555544322 234 89999999 5555533 3456899999876
Q ss_pred CCCcceeeeecccccccCCCCCCCe-eeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMM-TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
. .+.++..... +.. + .|||||+.|++.+... .....+||.++..++..++|..
T Consensus 370 --~-~~~l~~~~~~-v~~------~~~~s~dg~~l~~~~~~~----------------~~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 370 --K-AAALTHGNWS-VDE------LLAVDEKAGLAYFRAGIE----------------SARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp --C-EEESCCSSSC-EEE------EEEEETTTTEEEEEECSS----------------CTTCBEEEEEETTCCCCEECCC
T ss_pred --C-eeeeeecceE-EEe------EeEEeCCCCEEEEEEeCC----------------CCceEEEEEEEcCCCCeeeccc
Confidence 3 4556544322 111 3 5999999999887321 1124568888776655566644
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCC-----CCCCc--cCCceEEE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH-----PYPTL--ASLQKEMI 484 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~-----~~~~~--~~~~~e~i 484 (751)
... +. .++|||||+.|++...+...|+.+|++++.++..+.|+.... ..... .....+.+
T Consensus 424 ~~~------~~-------~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (741)
T 2ecf_A 424 APG------MH-------SASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFG 490 (741)
T ss_dssp SCS------EE-------EEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEE
T ss_pred CCC------ce-------EEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEE
Confidence 211 21 358999999999999999999999999987766666654322 11112 33468999
Q ss_pred EEEcCCC-ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCc-hHHHHHHhCCeEEEEcCC
Q 004475 485 KYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPS 562 (751)
Q Consensus 485 ~~~~~~~-~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~v~~~~~ 562 (751)
.++..+| ..+.++++.|+++.+. +++|+||++||++.... ....+..... .....|+++||+|+++++
T Consensus 491 ~~~~~~g~~~l~~~~~~P~~~~~~--~~~p~vv~~hG~~~~~~--------~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 560 (741)
T 2ecf_A 491 TLTAADGKTPLNYSVIKPAGFDPA--KRYPVAVYVYGGPASQT--------VTDSWPGRGDHLFNQYLAQQGYVVFSLDN 560 (741)
T ss_dssp EEECTTSSCEEEEEEECCSSCCTT--SCEEEEEECCCSTTCCS--------CSSCCCCSHHHHHHHHHHHTTCEEEEECC
T ss_pred EEEcCCCCEEEEEEEEeCCCCCCC--CCcCEEEEEcCCCCccc--------ccccccccchhHHHHHHHhCCCEEEEEec
Confidence 9998899 8999999999875433 35899999999763210 0011111000 356788899999999555
Q ss_pred CCCCCCCCCCCC------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 563 IPIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 563 ~~~~g~g~~~~~------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+|+|.+... ..+....++|+.++++++.++..+|+++|+|+||||||++|+.++.++|++++++|+.+|..
T Consensus 561 ---rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 637 (741)
T 2ecf_A 561 ---RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVT 637 (741)
T ss_dssp ---TTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCC
T ss_pred ---CCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCc
Confidence 455553211 11112457999999999999888888999999999999999999999999999999999987
Q ss_pred CCCCCccCcc-cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 637 NKTLTPFGFQ-TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 637 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
++......+. .....++...+.|...++...+.++++|+|++||++|..+| +.++++++++|+..+++++++++|++
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (741)
T 2ecf_A 638 DWGLYDSHYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVL--FTNSTSLMSALQKRGQPFELMTYPGA 715 (741)
T ss_dssp CGGGSBHHHHHHHHCCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTC
T ss_pred chhhhccccchhhcCCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCC--HHHHHHHHHHHHHCCCceEEEEECCC
Confidence 6432111010 01123444566777788988899999999999999999999 99999999999999999999999999
Q ss_pred CCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 716 HHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+|.+..... .++.+.+.+||+++|+
T Consensus 716 ~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 716 KHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred CCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 999864333 7888999999999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=469.18 Aligned_cols=586 Identities=15% Similarity=0.142 Sum_probs=406.2
Q ss_pred eeEEeecCCCCCCCCc--ccccCCCCc---------------ccccceeecCCCCeEEEEEeecccccccCCceeEEEEE
Q 004475 6 GIGIHRLLPDDSLGPE--KEVHGYPDG---------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD 68 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~--~~l~~~~~~---------------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~ 68 (751)
+| ++|+.+ |+. +.+...... ..+...+|||| ++|+|.. ...||+++
T Consensus 45 ~i-~~d~~t----g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-----------~~~i~~~d 107 (706)
T 2z3z_A 45 DL-VFNKAN----GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-----------QGGLVGFD 107 (706)
T ss_dssp EE-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-----------TTEEEEEE
T ss_pred cE-EEECCC----CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-----------CCEEEEEE
Confidence 47 899988 887 555421100 24778999999 8898853 27999999
Q ss_pred cCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccch
Q 004475 69 AETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (751)
Q Consensus 69 ~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (751)
+++++.++++.... .+..++|||||++|+|...
T Consensus 108 ~~~~~~~~l~~~~~-----~~~~~~~SpdG~~la~~~~------------------------------------------ 140 (706)
T 2z3z_A 108 MLARKVTYLFDTNE-----ETASLDFSPVGDRVAYVRN------------------------------------------ 140 (706)
T ss_dssp TTTTEEEEEECCTT-----CCTTCEECTTSSEEEEEET------------------------------------------
T ss_pred CCCCceEEccCCcc-----cccCCcCCCCCCEEEEEEC------------------------------------------
Confidence 99999888876543 2567899999999999722
Q ss_pred hhhhhheeeEEEEEcC-C-----CCceecCCC-ce---------------EEeeeeCCCCceEEEEEecCCcc-------
Q 004475 149 SLFDYYTTAQLVLGSL-D-----GTAKDFGTP-AV---------------YTAVEPSPDQKYVLITSMHRPYS------- 199 (751)
Q Consensus 149 ~~~~~~~~~~l~~~~~-~-----G~~~~lt~~-~~---------------~~~~~~SpDG~~i~~~~~~~~~~------- 199 (751)
..|+++++ + |+.++++.. .. +..++|||||++|++.+.+....
T Consensus 141 --------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 141 --------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp --------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred --------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 47999999 6 777777655 22 37899999999999987432100
Q ss_pred ------------cccc-cCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 200 ------------YKVP-CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 200 ------------~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
|... .......|++||+++++.+.+.... .....+..++|||||++ |++.+.. .
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~-l~~~~~~-~- 279 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE----------PKEKFLTNLSWSPDENI-LYVAEVN-R- 279 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS----------CTTCEEEEEEECTTSSE-EEEEEEC-T-
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC----------CCceeEeeEEEECCCCE-EEEEEeC-C-
Confidence 0000 0112367999999988776553221 11123568999999998 6665421 1
Q ss_pred CCccccCcccceeeccCCCCCCC-CceEeEee-ce----eEE-EEEec--CCceEEEeeeecccceeEEEecCCCCCCcc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGE-KPEILHKL-DL----RFS-VSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAP 337 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~-~~----~~~-~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (751)
......|++++++ ++ ..+.+... .. ... +.||| ||+.|+. +.. .+..+||.++.++ ...
T Consensus 280 -----~~~~~~v~~~d~~---~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~-~~~-~g~~~l~~~~~~~--~~~ 347 (706)
T 2z3z_A 280 -----AQNECKVNAYDAE---TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ-SRR-DGWNHLYLYDTTG--RLI 347 (706)
T ss_dssp -----TSCEEEEEEEETT---TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE-ECT-TSSCEEEEEETTS--CEE
T ss_pred -----CCCeeEEEEEECC---CCceeeEEEEccCCCeECccCCceeecCCCCEEEEE-Ecc-CCccEEEEEECCC--CEE
Confidence 1123489999986 33 34444322 11 123 79999 9996544 332 3457899999766 344
Q ss_pred eeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhh
Q 004475 338 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 417 (751)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 417 (751)
+.++.....-.. .++|||||+.|++.+... ......|+++|+++++.+.+.....
T Consensus 348 ~~l~~~~~~v~~------~~~~spdg~~l~~~~~~~----------------~~~~~~l~~~d~~~~~~~~l~~~~~--- 402 (706)
T 2z3z_A 348 RQVTKGEWEVTN------FAGFDPKGTRLYFESTEA----------------SPLERHFYCIDIKGGKTKDLTPESG--- 402 (706)
T ss_dssp EECCCSSSCEEE------EEEECTTSSEEEEEESSS----------------CTTCBEEEEEETTCCCCEESCCSSS---
T ss_pred EecCCCCeEEEe------eeEEcCCCCEEEEEecCC----------------CCceEEEEEEEcCCCCceeccCCCc---
Confidence 555543221100 157999999999988321 1124589999999887666653221
Q ss_pred hhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCC-ceEEE
Q 004475 418 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDG-VPLTA 496 (751)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~-~~i~~ 496 (751)
+ ..++|||||+.+++...+...|+.++++|+.+++...++..+ ..........+.+.++..+| ..+.+
T Consensus 403 ---~-------~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 471 (706)
T 2z3z_A 403 ---M-------HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKN-PDTGYAMPEIRTGTIMAADGQTPLYY 471 (706)
T ss_dssp ---E-------EEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEEECC-------CCCCEEEEEEECTTSSSEEEE
T ss_pred ---e-------EEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeeccccc-hhhhcCCCCcEEEEEEcCCCCEEEEE
Confidence 1 235899999999999888888999999999988744455432 23334445678899998888 89999
Q ss_pred EEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---
Q 004475 497 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--- 573 (751)
Q Consensus 497 ~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~--- 573 (751)
+++.|+++.+.+ ++|+||++||++.... ....|..........|+++||+|+++|+ +|+|.+..
T Consensus 472 ~~~~P~~~~~~~--~~p~iv~~HGg~~~~~--------~~~~~~~~~~~~~~~la~~G~~v~~~d~---rG~g~s~~~~~ 538 (706)
T 2z3z_A 472 KLTMPLHFDPAK--KYPVIVYVYGGPHAQL--------VTKTWRSSVGGWDIYMAQKGYAVFTVDS---RGSANRGAAFE 538 (706)
T ss_dssp EEECCTTCCTTS--CEEEEEECCCCTTCCC--------CCSCC----CCHHHHHHHTTCEEEEECC---TTCSSSCHHHH
T ss_pred EEEeCCCCCCCC--CccEEEEecCCCCcee--------eccccccCchHHHHHHHhCCcEEEEEec---CCCcccchhHH
Confidence 999998765433 5899999999753211 0011211111256788899999999555 45554321
Q ss_pred ---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc-ccc
Q 004475 574 ---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ-TEF 649 (751)
Q Consensus 574 ---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~-~~~ 649 (751)
...+....++|+.+++++|.+++.+|.++|+|+||||||++|+.++.++|++++++|+.+|+.++......+. ...
T Consensus 539 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 618 (706)
T 2z3z_A 539 QVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF 618 (706)
T ss_dssp HTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHH
T ss_pred HHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHHhhhhhhhc
Confidence 1122245579999999999988888889999999999999999999999999999999999876432211110 011
Q ss_pred ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
..++...+.+...++...+.++++|+|++||++|.++| +.++++++++|+..+.+++++++|+++|.+... ...++.
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~ 695 (706)
T 2z3z_A 619 DAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVV--WQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-DRVHLY 695 (706)
T ss_dssp CCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSC--THHHHHHHHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHH
T ss_pred CCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCC--HHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHH
Confidence 23344566777888888899999999999999999999 999999999999888899999999999998744 667889
Q ss_pred HHHHHHHHHHh
Q 004475 730 WETDRWLQKYC 740 (751)
Q Consensus 730 ~~~~~fl~~~l 740 (751)
+.+.+||.++|
T Consensus 696 ~~i~~fl~~~l 706 (706)
T 2z3z_A 696 ETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-52 Score=479.08 Aligned_cols=609 Identities=13% Similarity=0.053 Sum_probs=403.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcc--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
..|++||+.+ |+.+.+....... .+..++|||||++|||...... ........+||++++++++.++++....
T Consensus 37 g~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 111 (723)
T 1xfd_A 37 GTVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP-IYQHSYTGYYVLSKIPHGDPQSLDPPEV 111 (723)
T ss_dssp SCEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC-CSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred CCEEEEECCC----CcEEEEeccccccccccceEEECCCCCEEEEEecCcc-ceeecceeeEEEEECCCCceEeccCCcc
Confidence 3699999998 8887765322211 3788999999999999864211 1111334799999999999888875543
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.. ..+..++|||||++|+|.+. .+||++
T Consensus 112 ~~--~~~~~~~~SPdG~~la~~~~--------------------------------------------------~~i~~~ 139 (723)
T 1xfd_A 112 SN--AKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYC 139 (723)
T ss_dssp CS--CCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEE
T ss_pred cc--ccccccEECCCCCEEEEEEC--------------------------------------------------CeEEEE
Confidence 21 12567899999999999843 379999
Q ss_pred cC-CCCceecCCC--ceE------------------EeeeeCCCCceEEEEEecCCcc--ccc-----------------
Q 004475 163 SL-DGTAKDFGTP--AVY------------------TAVEPSPDQKYVLITSMHRPYS--YKV----------------- 202 (751)
Q Consensus 163 ~~-~G~~~~lt~~--~~~------------------~~~~~SpDG~~i~~~~~~~~~~--~~~----------------- 202 (751)
++ +|+.++++.. ..+ ..++|||||++|++.+.+.... +..
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 99 6677777654 222 5799999999999987653210 000
Q ss_pred ccC--CCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccccee
Q 004475 203 PCA--RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (751)
Q Consensus 203 ~~~--~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~ 279 (751)
..+ .....|++||+++++. +++..... +......+..++|||||+. |++.... ......|+
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~SpDg~~-l~~~~~~--------~~~~~~i~ 283 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDD-------PRMREYYITMVKWATSTKV-AVTWLNR--------AQNVSILT 283 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCC-------GGGSSEEEEEEEESSSSEE-EEEEEET--------TSCEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCcc-------CCCccceeEEEEEeCCCeE-EEEEEcC--------CCCeEEEE
Confidence 001 1124799999988763 44432210 0011223457899999997 5443311 11235799
Q ss_pred eccCCCCCCCCceEeEee--cee----EE-EEEecCCceEEEeeeeccc----ceeEEEec-CCCCCCc---ceeeeecc
Q 004475 280 TQPAEPAEGEKPEILHKL--DLR----FS-VSWCDDSLALVNETWYKTS----QTRTWLVC-PGSKDVA---PRVLFDRV 344 (751)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~--~~~----~~-~~~spdg~~l~~~~~~~~~----~~~l~~~~-~~~~~~~---~~~l~~~~ 344 (751)
+++++ ++....+... .+. .. +.|||||+.|++.+....+ ..+||+++ ..++ . .+.++...
T Consensus 284 ~~d~~---~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~~~~ 358 (723)
T 1xfd_A 284 LCDAT---TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGD 358 (723)
T ss_dssp EEETT---TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS--SSCCCCBSCCSS
T ss_pred EEeCC---CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC--CccceeEeecCC
Confidence 99986 4444444322 111 14 8999999999987332222 45899999 5553 3 45565432
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC-ceeEEeeccchhhhhceee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVA 423 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~ 423 (751)
..... .++|||||+.|+|.+.+. .....+||.+++.++ +...+...-..
T Consensus 359 ~~~~~------~~~~spdg~~l~~~~~~~----------------~~~~~~l~~~~~~~~~~~~~l~~~~~~-------- 408 (723)
T 1xfd_A 359 WDVTK------ILAYDEKGNKIYFLSTED----------------LPRRRQLYSANTVGNFNRQCLSCDLVE-------- 408 (723)
T ss_dssp SCEEE------EEEEETTTTEEEEEESSS----------------CTTCCEEEEECSSTTCCCBCSSTTSSS--------
T ss_pred eEEEe------eeEEcCCCCEEEEEEcCC----------------CCcceEEEEEeCCCCCCcceecccccC--------
Confidence 22111 157999999999987320 113457888887654 33334321000
Q ss_pred eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCC----CCCccCCceEEEEEEcCCCceEEEEEE
Q 004475 424 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP----YPTLASLQKEMIKYQRKDGVPLTATLY 499 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~----~~~~~~~~~e~i~~~~~~~~~i~~~~~ 499 (751)
......++|||||+.|++...++..|..++ .+..+++...+...+.. .........+.+.++..+| ++.++++
T Consensus 409 -~~~~~~~~~spdg~~l~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~ 485 (723)
T 1xfd_A 409 -NCTYFSASFSHSMDFFLLKCEGPGVPMVTV-HNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQIL 485 (723)
T ss_dssp -SCCCCEEEECTTSSEEEEECCSSSSCCEEE-EETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEE
T ss_pred -CCCeEEEEECCCCCEEEEEccCCCCCeEEE-EECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEE
Confidence 011223689999999999998888777655 47655554333322210 1122223567788888888 9999999
Q ss_pred cCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC------CC
Q 004475 500 LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK------LP 573 (751)
Q Consensus 500 ~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~------~~ 573 (751)
.|+++.+. +++|+||++||+++... ....+. .......++++||+|++++++ |+|.. ..
T Consensus 486 ~P~~~~~~--~~~p~vv~~HG~~~~~~--------~~~~~~--~~~~~~~l~~~G~~vv~~d~r---G~g~~g~~~~~~~ 550 (723)
T 1xfd_A 486 KPATFTDT--THYPLLLVVDGTPGSQS--------VAEKFE--VSWETVMVSSHGAVVVKCDGR---GSGFQGTKLLHEV 550 (723)
T ss_dssp BCSSCCSS--SCEEEEEECCCCTTCCC--------CCCCCC--CSHHHHHHHTTCCEEECCCCT---TCSSSHHHHHHTT
T ss_pred eCCCCCCC--CccCEEEEEcCCCCccc--------cCcccc--ccHHHHHhhcCCEEEEEECCC---CCccccHHHHHHH
Confidence 99876443 35899999999863210 001111 113344566799999996554 44432 01
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEEccCCCCCCCCccCccc-c
Q 004475 574 NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGSYNKTLTPFGFQT-E 648 (751)
Q Consensus 574 ~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~d~~~~~~~~~~-~ 648 (751)
...+....++|+.++++++.++..+|++||+|+||||||++|+.++.++ |++++++|+.+|+.++......+.. .
T Consensus 551 ~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 630 (723)
T 1xfd_A 551 RRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERY 630 (723)
T ss_dssp TTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhh
Confidence 1112234678999999999988778889999999999999999999999 9999999999998775432110000 0
Q ss_pred cccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHH
Q 004475 649 FRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 727 (751)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 727 (751)
...++...+.+...++...+.+++ +|+|++||++|..+| +.++++++++|+..+.+++++++|+++|.+...+....
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 708 (723)
T 1xfd_A 631 LGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQH 708 (723)
T ss_dssp HCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHH
T ss_pred cCCccCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcC--HhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHH
Confidence 011222223344556667788898 799999999999999 99999999999999999999999999999865666778
Q ss_pred HHHHHHHHHHHHhc
Q 004475 728 VIWETDRWLQKYCL 741 (751)
Q Consensus 728 ~~~~~~~fl~~~l~ 741 (751)
+.+.+.+||.++++
T Consensus 709 ~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 709 LYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998774
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=451.36 Aligned_cols=580 Identities=16% Similarity=0.150 Sum_probs=405.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc---c-ceeeeeEEe--cCCcE-EEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL---N-AVFGSFVWV--NNSTL-LIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~---~-~~~~~~~ws--pDg~~-l~~~ 104 (751)
.+..|+|||| +++|++.+..+ ++...||++ ..+++.++||....... + .+-..+.|+ |||++ |+|.
T Consensus 25 ~~~~~~~s~~--~~~~~~~~~~~----~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 25 RPACVGAVGD--EVWWVAPRPAE----AGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp CCEEEEEETT--EEEEEEEETTT----TTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred ccceeEEcCC--eEEEEecCccc----CCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 5788999965 78888753211 445789988 56788999987653210 0 000156677 99999 9998
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC----CCceecCC-----C-
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKDFGT-----P- 174 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G~~~~lt~-----~- 174 (751)
... ..+||+++++ |+.++|+. +
T Consensus 98 ~~~------------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~ 129 (662)
T 3azo_A 98 HFG------------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGG 129 (662)
T ss_dssp BTT------------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTC
T ss_pred ECC------------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCC
Confidence 431 1479999997 77888887 4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC------ceeeeec-cCCCCCCCCCccCCccCCCcee
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------KLVRELC-DLPPAEDIPVCYNSVREGMRSI 247 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 247 (751)
..+..++|||||++|++.+.+.... .......+|++|++++ ++.++++ .... .+..+
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~ 193 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGE---GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHR-------------FVTGP 193 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSS---STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSS-------------EECCC
T ss_pred ccccCcEECCCCCEEEEEEecccCC---CCCCceeEEEEEECCCCccccCCceeEEEecCCC-------------cccCc
Confidence 5677999999999999987642100 0011136899999998 7777765 3221 23367
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC--CCceEeEee-ceeEE-EEEecCCceEEEeeeecccce
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG--EKPEILHKL-DLRFS-VSWCDDSLALVNETWYKTSQT 323 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~~-~~~~~-~~~spdg~~l~~~~~~~~~~~ 323 (751)
+|||||++ |++++...... .....+|++++++ .++ ...+.++.. ..... +.|||||+ |+|.++.. +..
T Consensus 194 ~~SpDG~~-la~~~~~~~~~----~~~~~~i~~~d~~-~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~-~~~ 265 (662)
T 3azo_A 194 RLSPDGRQ-AVWLAWDHPRM----PWEGTELKTARVT-EDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT-GWW 265 (662)
T ss_dssp EECTTSSE-EEEEEECTTCC----TTTCEEEEEEEEC-TTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT-SSC
T ss_pred eECCCCCE-EEEEECCCCCC----CCCCcEEEEEEEC-CCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC-CCe
Confidence 99999999 77765322111 1123589999985 112 145556554 45666 99999999 77877543 345
Q ss_pred eEEEecCCCCCCcceeeeecccccc---cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEe
Q 004475 324 RTWLVCPGSKDVAPRVLFDRVFENV---YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 400 (751)
Q Consensus 324 ~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 400 (751)
.||+++++++ +.+.++....... |. ++...++|+|||+.++... . ...+|+++|
T Consensus 266 ~l~~~~~~~~--~~~~l~~~~~~~~~p~w~-~~~~~~~~~~~~~~~~~~~-------------------~-~~~~l~~~d 322 (662)
T 3azo_A 266 NLHRVDPATG--AATQLCRREEEFAGPLWT-PGMRWFAPLANGLIAVVHG-------------------K-GAAVLGILD 322 (662)
T ss_dssp EEEEECTTTC--CEEESSCCSSBSSCCCCS-TTCCSEEECTTSCEEEEEB-------------------S-SSCEEEEEE
T ss_pred EEEEEECCCC--ceeecccccccccCcccc-ccCceEeEeCCCEEEEEEE-------------------c-CccEEEEEE
Confidence 8999998774 4556654322210 00 0011144556665433322 1 345899999
Q ss_pred cCCCceeEEeeccchhhhhceeeeecCCcceee-ccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCC-ccC
Q 004475 401 INTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPT-LAS 478 (751)
Q Consensus 401 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~-~~~ 478 (751)
+++++.++|...... + ..+ ++|++.+++...+...+..||++++.+++.++|+........ ...
T Consensus 323 ~~~~~~~~l~~~~~~-----~---------~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~ 388 (662)
T 3azo_A 323 PESGELVDAAGPWTE-----W---------AATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYY 388 (662)
T ss_dssp TTTTEEEECCSSCCE-----E---------EEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGS
T ss_pred CCCCcEEEecCCCCe-----E---------EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCcccc
Confidence 988877666433211 1 123 788999999998988899999999999999999876543222 222
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCC--CCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYD--QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~--~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
...+.+.+...++..+.++++.|++.. ....+++|+||++||++.... ..........|+++||+
T Consensus 389 ~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~-------------~~~~~~~~~~l~~~G~~ 455 (662)
T 3azo_A 389 PEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRV-------------PAVLDLDVAYFTSRGIG 455 (662)
T ss_dssp CCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCC-------------CCSCCHHHHHHHTTTCE
T ss_pred CcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccC-------------cccchHHHHHHHhCCCE
Confidence 357889999888899999999998753 001235899999999863211 01122456788899999
Q ss_pred EEEcCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 557 VLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
|+++++++..|+|.+.. ...+....++|+.++++++.++..+|+++|+|+||||||++|+.++.+ |++|+++|+.+
T Consensus 456 v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~ 534 (662)
T 3azo_A 456 VADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLY 534 (662)
T ss_dssp EEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEES
T ss_pred EEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecC
Confidence 99977776666765421 112223458999999999999988999999999999999999998887 89999999999
Q ss_pred CCCCCCCC------ccC--cc-cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC
Q 004475 634 GSYNKTLT------PFG--FQ-TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704 (751)
Q Consensus 634 ~~~d~~~~------~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~ 704 (751)
|+.+.... .+. +. ..........+.+...++..++.++++|+|++||++|.++| +.++++++++|+..+
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~g 612 (662)
T 3azo_A 535 PVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCP--PEQCDRFLEAVAGCG 612 (662)
T ss_dssp CCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--THHHHHHHHHHTTSC
T ss_pred CccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCC--HHHHHHHHHHHHHcC
Confidence 98763211 000 00 00111124456778889999999999999999999999999 999999999999999
Q ss_pred CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 705 ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 705 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
.+++++++++++|.+...+...++...+++||.++++..
T Consensus 613 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 651 (662)
T 3azo_A 613 VPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFGVE 651 (662)
T ss_dssp CCEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999998766667889999999999999753
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=453.97 Aligned_cols=537 Identities=15% Similarity=0.111 Sum_probs=386.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...++||||++|||++.+ ++..+||.+ ++|+.+++|..... .+..++|||| + |+|.+....+.
T Consensus 23 ~~~~~~~~~DG~~la~~s~~-------~g~~~lw~~--~~g~~~~lt~~~~~----~~~~~~~spd-~-~l~~~~~~~g~ 87 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFS-------EGSVNAYLY--DGGETVKLNREPIN----SVLDPHYGVG-R-VILVRDVSKGA 87 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEE-------TTEEEEEEE--ETTEEEECCSSCCS----EECEECTTCS-E-EEEEEECSTTS
T ss_pred chheeecCCCCCeEEEEEcc-------CCceeEEEE--cCCCcEeeeccccc----ccccccCCCC-e-EEEEeccCCCC
Confidence 47788999999999998743 455778886 58999999876632 3678899999 4 66654321111
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CCCceecCCCceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G~~~~lt~~~~~~~~~~SpDG~~i 189 (751)
....||.+++ +|...+++........+|||||+.+
T Consensus 88 -------------------------------------------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 88 -------------------------------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV 124 (582)
T ss_dssp -------------------------------------------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCE
T ss_pred -------------------------------------------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeE
Confidence 1158999999 7866677766445567999999998
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
++.+... ..+.+||+++++.++++..+. ..++|||||++ |++.+...
T Consensus 125 ~~~s~~~------------~~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~-la~~~~~~----- 171 (582)
T 3o4h_A 125 VFTGATE------------DRVALYALDGGGLRELARLPG---------------FGFVSDIRGDL-IAGLGFFG----- 171 (582)
T ss_dssp EEEEECS------------SCEEEEEEETTEEEEEEEESS---------------CEEEEEEETTE-EEEEEEEE-----
T ss_pred EEEecCC------------CCceEEEccCCcEEEeecCCC---------------ceEEECCCCCE-EEEEEEcC-----
Confidence 8876542 234488999888887765432 36799999999 66654221
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 348 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 348 (751)
.....||+++++ ++..+.++...+... ++|||||+.|+ .+. ..+..+||+++++++ +.+ ++......+
T Consensus 172 ---~~~~~i~~~d~~---~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~-~~~~~~i~~~d~~~~--~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 172 ---GGRVSLFTSNLS---SGGLRVFDSGEGSFSSASISPGMKVTA-GLE-TAREARLVTVDPRDG--SVE-DLELPSKDF 240 (582)
T ss_dssp ---TTEEEEEEEETT---TCCCEEECCSSCEEEEEEECTTSCEEE-EEE-CSSCEEEEEECTTTC--CEE-ECCCSCSHH
T ss_pred ---CCCeEEEEEcCC---CCCceEeecCCCccccceECCCCCEEE-Ecc-CCCeeEEEEEcCCCC--cEE-EccCCCcCh
Confidence 122469999986 667778877777777 99999999998 332 233468999999885 334 332221111
Q ss_pred cCCCCCCCee--------eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 349 YSDPGSPMMT--------RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 349 ~~~~~~~~~~--------~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
.. ++ ||||| .+++..... ..+.+|++ |+..+.. .. .
T Consensus 241 ~~------~~~~~~~~~~~spdg-~~~~~~~~~--------------------g~~~l~~~--g~~~~~~--~~-----~ 284 (582)
T 3o4h_A 241 SS------YRPTAITWLGYLPDG-RLAVVARRE--------------------GRSAVFID--GERVEAP--QG-----N 284 (582)
T ss_dssp HH------HCCSEEEEEEECTTS-CEEEEEEET--------------------TEEEEEET--TEEECCC--SS-----E
T ss_pred hh------hhhccccceeEcCCC-cEEEEEEcC--------------------CcEEEEEE--CCeeccC--CC-----c
Confidence 11 45 99999 666666321 14556666 5433211 11 1
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCC---ccCCceEEEEEEcCCCceEEEE
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPT---LASLQKEMIKYQRKDGVPLTAT 497 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~---~~~~~~e~i~~~~~~~~~i~~~ 497 (751)
+. .++|| ||+ ++++..+...|+.+|++++.+ +.++| .... ......+.+.++..+|..+.++
T Consensus 285 v~-------~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~~~~l-----~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 349 (582)
T 3o4h_A 285 HG-------RVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-PLLEG-----GLPEDLRRSIAGSRLVWVESFDGSRVPTY 349 (582)
T ss_dssp EE-------EEEEE-TTE-EEEEEEETTEEEEEEEETTCC-EEECC-----CCCHHHHHTEEEEEEEEEECTTSCEEEEE
T ss_pred eE-------EEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-ceEEE-----ecCCccccccCcceEEEEECCCCCEEEEE
Confidence 11 25788 775 556777888899999999765 55554 1112 3345688999998899999999
Q ss_pred EEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---C
Q 004475 498 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---N 574 (751)
Q Consensus 498 ~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---~ 574 (751)
++.|++..+ ++|+||++||+++... ..........|+++||+|+++++++..|+|.+.. .
T Consensus 350 ~~~p~~~~~----~~p~vv~~HG~~~~~~-------------~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~ 412 (582)
T 3o4h_A 350 VLESGRAPT----PGPTVVLVHGGPFAED-------------SDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKII 412 (582)
T ss_dssp EEEETTSCS----SEEEEEEECSSSSCCC-------------CSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTT
T ss_pred EEcCCCCCC----CCcEEEEECCCccccc-------------ccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhh
Confidence 999986432 5899999999864321 1112356778899999999977776555665411 1
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccc-----c
Q 004475 575 DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE-----F 649 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~-----~ 649 (751)
..+....++|+.++++++.++..+| +|+|+||||||++|+.++.++|++++++|+.+|+.+........... .
T Consensus 413 ~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 490 (582)
T 3o4h_A 413 GDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIE 490 (582)
T ss_dssp TCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHH
Confidence 2233456799999999999987777 99999999999999999999999999999999987632110000000 0
Q ss_pred ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
...-...+.+...+|..++.++++|+|++||++|.++| +.++++++++|+..+.+++++++|+++|.+...+...+++
T Consensus 491 ~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 568 (582)
T 3o4h_A 491 QLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTP--LKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKIL 568 (582)
T ss_dssp HHTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHH
T ss_pred HHcCcCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcC--HHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHH
Confidence 00013456778889999999999999999999999999 9999999999999999999999999999987666778899
Q ss_pred HHHHHHHHHHhcC
Q 004475 730 WETDRWLQKYCLS 742 (751)
Q Consensus 730 ~~~~~fl~~~l~~ 742 (751)
+.+.+||+++++.
T Consensus 569 ~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 569 LPAVFFLATQRER 581 (582)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999863
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=463.11 Aligned_cols=602 Identities=14% Similarity=0.090 Sum_probs=406.5
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe---eeccC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~---~~lt~ 79 (751)
.+|+++++.+ |+.++++..... ..+..++|||||++|||.+...+..+ ......||++++++|+. ++++
T Consensus 36 ~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~-~s~~~~i~~~d~~~g~~~~~~~l~- 109 (719)
T 1z68_A 36 NNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR-YSYTATYYIYDLSNGEFVRGNELP- 109 (719)
T ss_dssp SCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS-SCEEEEEEEEETTTTEECCSSCCC-
T ss_pred CCEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE-eecceEEEEEECCCCccccceecC-
Confidence 4799999999 998887631111 02789999999999999875211000 02247999999999988 6663
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
. .+..++|||||++|+|... ..|
T Consensus 110 --~-----~~~~~~~SPDG~~la~~~~--------------------------------------------------~~i 132 (719)
T 1z68_A 110 --R-----PIQYLCWSPVGSKLAYVYQ--------------------------------------------------NNI 132 (719)
T ss_dssp --S-----SBCCEEECSSTTCEEEEET--------------------------------------------------TEE
T ss_pred --c-----ccccceECCCCCEEEEEEC--------------------------------------------------CeE
Confidence 2 2567899999999999832 479
Q ss_pred EEEcC-CCCceecCCCc--e-E-----------------EeeeeCCCCceEEEEEecCCcc-------------------
Q 004475 160 VLGSL-DGTAKDFGTPA--V-Y-----------------TAVEPSPDQKYVLITSMHRPYS------------------- 199 (751)
Q Consensus 160 ~~~~~-~G~~~~lt~~~--~-~-----------------~~~~~SpDG~~i~~~~~~~~~~------------------- 199 (751)
+++++ +|+.++++..+ . + ..++|||||++|++.+.+....
T Consensus 133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI 212 (719)
T ss_dssp EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence 99999 67777776431 1 1 3799999999999987653210
Q ss_pred -cccc-cCCCceeEEEEeCCCceee---eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCc
Q 004475 200 -YKVP-CARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (751)
Q Consensus 200 -~~~~-~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~ 274 (751)
|... ......+|++||+++++.. ++.. |..+......+..++|||||+ +++.... ....
T Consensus 213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~SpD~~--~~~~~~~-------~~~~ 276 (719)
T 1z68_A 213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV-------PAMIASSDYYFSWLTWVTDER--VCLQWLK-------RVQN 276 (719)
T ss_dssp ECCBTTSCCCEEEEEEEESSCHHHHCCEECCC-------CHHHHTSCEEEEEEEESSSSE--EEEEEEE-------SSTT
T ss_pred cCCCCCCCCCeeEEEEEECCCCCccceeEccC-------CccCCCCcceEEEeEEeCCCe--EEEEEec-------cccC
Confidence 0000 0011247999999987642 2211 001111223356889999975 3443211 1112
Q ss_pred ccceeecc----CCCCCCCCceEeE----e-ece--e---EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 275 RDIIYTQP----AEPAEGEKPEILH----K-LDL--R---FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 275 ~~~l~~~~----~~~~~~~~~~~l~----~-~~~--~---~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
...|++++ ++ ++....+. . ..+ . .. +.|||||+.|++......+..+||+++++++ ..+.
T Consensus 277 ~~~l~~~d~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~ 351 (719)
T 1z68_A 277 VSVLSICDFREDWQ---TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQ 351 (719)
T ss_dssp EEEEEEEEECSSSS---SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEE
T ss_pred eEEEEEEcccCCCC---CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEe
Confidence 24688888 64 33333333 1 111 1 12 7899999999886544455679999999884 4566
Q ss_pred eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc--eeEEeeccchhh
Q 004475 340 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS--KERIWESNREKY 417 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~ 417 (751)
++..... +.. +.++ ||+.|+|.+... .......+||.+++.++. .+.+...-..
T Consensus 352 lt~~~~~-v~~------~~~~-d~~~i~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~-- 407 (719)
T 1z68_A 352 ITSGKWE-AIN------IFRV-TQDSLFYSSNEF--------------EEYPGRRNIYRISIGSYPPSKKCVTCHLRK-- 407 (719)
T ss_dssp CSCSSSC-EEE------EEEE-CSSEEEEEESCG--------------GGCTTCBEEEEEECSSSSCCEEESSTTTTT--
T ss_pred cccCceE-EEE------EEEE-eCCEEEEEEecC--------------CCCCceEEEEEEeCCCCCCCceeccCccCC--
Confidence 6643322 111 4456 999999988320 001234578888886663 3444321000
Q ss_pred hhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCC----CCCccCCceEEEEEEcCCCce
Q 004475 418 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP----YPTLASLQKEMIKYQRKDGVP 493 (751)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~----~~~~~~~~~e~i~~~~~~~~~ 493 (751)
. ......++|||||+++++..+++..| .++++++.+|+..+++..+.. .........+.++++..+ .+
T Consensus 408 --~----~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 479 (719)
T 1z68_A 408 --E----RCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-IT 479 (719)
T ss_dssp --T----TBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EE
T ss_pred --C----CCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eE
Confidence 0 00112358999999999998887765 688999988887777765432 222333457889998777 89
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~ 572 (751)
+.++++.|+++.+. +++|+||++||++.... ....+.......++ ++||+|++++++ |+|.+.
T Consensus 480 l~~~~~~P~~~~~~--~~~p~vl~~hG~~~~~~-----------~~~~~~~~~~~~l~~~~G~~v~~~d~r---G~g~~~ 543 (719)
T 1z68_A 480 LWYKMILPPQFDRS--KKYPLLIQVYGGPCSQS-----------VRSVFAVNWISYLASKEGMVIALVDGR---GTAFQG 543 (719)
T ss_dssp EEEEEEECTTCCSS--SCEEEEEEECCCTTBCC-----------CCCCCCCCHHHHHHHTTCCEEEEEECT---TBSSSC
T ss_pred EEEEEEeCCCCCCC--CCccEEEEECCCCCcCc-----------ccccchhhHHHHHHhcCCeEEEEEcCC---CCCCCc
Confidence 99999999876443 35899999999863211 01111212344454 799999995554 554432
Q ss_pred CC------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 573 PN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 573 ~~------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
.. ..+.....+|+.++++++.++..+|+++|+|+||||||++|+.++.++|++++++|+.+|+.++......+.
T Consensus 544 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~ 623 (719)
T 1z68_A 544 DKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYT 623 (719)
T ss_dssp HHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHH
T ss_pred hhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccc
Confidence 11 112245689999999999998778899999999999999999999999999999999999877543211100
Q ss_pred c-ccccc--hhhHHHHHhcCcccccCCCCC-CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc
Q 004475 647 T-EFRTL--WEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 647 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~-P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 722 (751)
. ....+ +...+.+...++...+.++++ |+|++||++|.++| +.++++++++|+..+++++++++|+++|.+ ..
T Consensus 624 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~ 700 (719)
T 1z68_A 624 ERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVH--FQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SG 700 (719)
T ss_dssp HHHHCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTCSSSC--THHHHHHHHHHHHTTCCCEEEEETTCCTTC-CT
T ss_pred hhhcCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCCCCcC--HHHHHHHHHHHHHCCCceEEEEECcCCCCC-Cc
Confidence 0 00111 334556777888888889988 89999999999999 999999999999999999999999999998 35
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 004475 723 ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~l~ 741 (751)
+....+.+.+.+||.++|+
T Consensus 701 ~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 701 LSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhC
Confidence 5577899999999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=442.91 Aligned_cols=588 Identities=15% Similarity=0.094 Sum_probs=396.6
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc--cccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
.+..+|||++++|++... ......||+++..+++.++|++.... .....+..++|||||++|+|........
T Consensus 72 ~~~p~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~- 145 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHK-----DKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD- 145 (695)
T ss_dssp ECCCEEETTEEEEEEECT-----TCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS-
T ss_pred CCCCEEECCEEEEEEEcC-----CCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc-
Confidence 345569999999988521 12357899999988988888764321 0011367899999999999996532211
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCCce--EEeeeeCCCCceE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV--YTAVEPSPDQKYV 189 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~~~--~~~~~~SpDG~~i 189 (751)
...|+++|+ +|+..+...... ...++|||||+.|
T Consensus 146 -------------------------------------------~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l 182 (695)
T 2bkl_A 146 -------------------------------------------EAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGF 182 (695)
T ss_dssp -------------------------------------------CCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEE
T ss_pred -------------------------------------------eEEEEEEECCCCCCcCCcccCcccccceEEecCCCEE
Confidence 158999999 665441111122 2689999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|.+.+....-.........+||+|++.+++. +.+...+.. ......+.|||||++ |++.+....
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~-l~~~~~~~~-- 249 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD----------PTTFLQSDLSRDGKY-LFVYILRGW-- 249 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC----------TTCEEEEEECTTSCC-EEEEEEETT--
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC----------CEEEEEEEECCCCCE-EEEEEeCCC--
Confidence 99887542100000112246799999987753 233332211 112347899999999 666542210
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCC-cceeeeecc-
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRV- 344 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~- 344 (751)
...+||+++.. ++..+.+........ +.| +||+ |++.++.......|++++++++.. ..+.++...
T Consensus 250 ------~~~~l~~~~~~---~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 250 ------SENDVYWKRPG---EKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp ------TEEEEEEECTT---CSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred ------CceEEEEEcCC---CCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 23588988764 456667766554444 666 8888 888876544567999999987511 124555432
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 424 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 424 (751)
...+.. ++|+ ++ .|++.... ....+|++++++++..+.+...... .+
T Consensus 319 ~~~l~~------~~~~-~~-~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~----~v--- 365 (695)
T 2bkl_A 319 SASLLS------VSIV-GG-HLSLEYLK------------------DATSEVRVATLKGKPVRTVQLPGVG----AA--- 365 (695)
T ss_dssp SCEEEE------EEEE-TT-EEEEEEEE------------------TTEEEEEEEETTCCEEEECCCSSSS----EE---
T ss_pred CCeEEE------EEEE-CC-EEEEEEEE------------------CCEEEEEEEeCCCCeeEEecCCCCe----EE---
Confidence 111111 4566 44 45555522 1234788888865444444221110 01
Q ss_pred ecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCC
Q 004475 425 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGY 504 (751)
Q Consensus 425 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~ 504 (751)
..+++|||++.++++.++...|+.+|++|+.+++.+.++..+.. .+...+..+.+.+++.+|..|.++++.|++.
T Consensus 366 ----~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~ 440 (695)
T 2bkl_A 366 ----SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDL 440 (695)
T ss_dssp ----CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTC
T ss_pred ----EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCC
Confidence 12478899999999999999999999999999998888765433 2344567899999999999999999999875
Q ss_pred CCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC---CCCchhHHHH
Q 004475 505 DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK---LPNDRFVEQL 581 (751)
Q Consensus 505 ~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~---~~~~~~~~~~ 581 (751)
... ++.|+||++|||+..... ..| ......|+++||+|+++++++..++|.. ..........
T Consensus 441 ~~~--~~~p~vl~~hGg~~~~~~---------~~~----~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~ 505 (695)
T 2bkl_A 441 KRD--GNAPTLLYGYGGFNVNME---------ANF----RSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNV 505 (695)
T ss_dssp CCS--SCCCEEEECCCCTTCCCC---------CCC----CGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHH
T ss_pred CCC--CCccEEEEECCCCccccC---------CCc----CHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCc
Confidence 432 358999999997632211 011 1234467889999999776655445432 1112234566
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-----cccccccch--h
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-----FQTEFRTLW--E 654 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-----~~~~~~~~~--~ 654 (751)
++|+.+++++|.+++.+|++||+|+|+||||++++.++.++|++|+++|+.+|+.+....... +......+. .
T Consensus 506 ~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~ 585 (695)
T 2bkl_A 506 FDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPE 585 (695)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHH
T ss_pred HHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHH
Confidence 899999999999998899999999999999999999999999999999999999875432110 000001110 1
Q ss_pred hHHHHHhcCcccccCCCC--CCEEEEEcCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCCcCCc-cccHHHH
Q 004475 655 ATNVYIEMSPITHANKIK--KPILIIHGEVDDKVGLFPMQAERFFDALKG---HGALSRLVLLPFEHHVYAA-RENVMHV 728 (751)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~--~P~li~~G~~D~~vp~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~~~-~~~~~~~ 728 (751)
..+.+..++|+.++.+++ +|+||+||++|.+|| +.++++++++|++ .+.+++++++++++|.+.. .....+.
T Consensus 586 ~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 663 (695)
T 2bkl_A 586 DFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVD--PMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIES 663 (695)
T ss_dssp HHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSC--THHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHH
T ss_pred HHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHH
Confidence 223456788998888876 799999999999999 9999999999998 6789999999999999853 2345677
Q ss_pred HHHHHHHHHHHhcCCCCCCCCC
Q 004475 729 IWETDRWLQKYCLSNTSDGKCG 750 (751)
Q Consensus 729 ~~~~~~fl~~~l~~~~~~~~~~ 750 (751)
...+++||.++++.......|.
T Consensus 664 ~~~~~~fl~~~l~~~~~~~~~~ 685 (695)
T 2bkl_A 664 SVDLYSFLFQVLDVQGAQGGVA 685 (695)
T ss_dssp HHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHcCCCCCCcchh
Confidence 8889999999998766666664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=442.50 Aligned_cols=587 Identities=13% Similarity=0.094 Sum_probs=397.9
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc--cccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
...| +|||++++|++... ......||+++..+++.+.|++.... .....+..++|||||++|+|.+.....
T Consensus 76 ~~~p--~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~ 148 (710)
T 2xdw_A 76 YSCH--FKKGKRYFYFYNTG-----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS 148 (710)
T ss_dssp ECCC--EEETTEEEEEEECS-----SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCC--EEECCEEEEEEEcC-----CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC
Confidence 3445 49999999987521 12346899999888887765432210 001136689999999999999653211
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
. ..+|+++|+ +|+..+++.. ..+..++|||||+.
T Consensus 149 ~--------------------------------------------~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 149 D--------------------------------------------WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp S--------------------------------------------CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSE
T ss_pred c--------------------------------------------eEEEEEEECCCCCCCcccccCcccceEEEEeCCCE
Confidence 1 148999999 6666554433 33567999999999
Q ss_pred EEEEEecCCcc---cccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 189 VLITSMHRPYS---YKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 189 i~~~~~~~~~~---~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|+|.+...... -.........+||++++.+++.+ .+...+.. ......+.|||||++ |++.+..
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~----------~~~~~~~~~SpDg~~-l~~~~~~ 253 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----------PKWMGGAELSDDGRY-VLLSIRE 253 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCE-EEEEEEC
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC----------CeEEEEEEEcCCCCE-EEEEEEc
Confidence 99988654310 00001122467999999876532 22222111 111336799999999 6665422
Q ss_pred cCCCCccccCcccceeeccCCCC-----CCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCC-cc
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPA-----EGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-AP 337 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~ 337 (751)
.. ....+||+++++.. .....+.+..........|+|||+.|+|.++.......|++++++++.. ..
T Consensus 254 ~~-------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 254 GC-------DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp SS-------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred cC-------CCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 11 11358999998510 0114556655433333468999999999987655567899999987521 23
Q ss_pred eeeeecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce-eEEeeccch
Q 004475 338 RVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-ERIWESNRE 415 (751)
Q Consensus 338 ~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~ 415 (751)
+.++..... .+.. ++|++++ .|++.... ....+|+++++.+|+. +.+.....
T Consensus 327 ~~l~~~~~~~~~~~------~~~~~~~-~lv~~~~~------------------~g~~~l~~~~~~~g~~~~~l~~~~~- 380 (710)
T 2xdw_A 327 KVLVPEHEKDVLEW------VACVRSN-FLVLCYLH------------------DVKNTLQLHDLATGALLKIFPLEVG- 380 (710)
T ss_dssp EEEECCCSSCEEEE------EEEETTT-EEEEEEEE------------------TTEEEEEEEETTTCCEEEEECCCSS-
T ss_pred eeccCCCCCCeEEE------EEEEcCC-EEEEEEEE------------------CCEEEEEEEECCCCCEEEecCCCCc-
Confidence 555543221 1111 6677555 45555522 1234789999966653 44432211
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc--eeEeecCCCCCCCccCCceEEEEEEcCCCce
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK--SSQITNFPHPYPTLASLQKEMIKYQRKDGVP 493 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~--~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~ 493 (751)
.+. .++++||++.++|+.++...|+.+|++|+.+++ .+.+........+...+..+++.+++.+|..
T Consensus 381 ----~v~-------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg~~ 449 (710)
T 2xdw_A 381 ----SVV-------GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTK 449 (710)
T ss_dssp ----EEE-------EEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTTSCE
T ss_pred ----eEE-------EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCCCCE
Confidence 111 246889999999999999999999999999988 6666654332123445678999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~ 572 (751)
|+++++.|++.... ++.|+||++||++.... ..........|++ +||+|+++++++..++|...
T Consensus 450 i~~~~~~p~~~~~~--~~~P~vl~~hGg~~~~~-------------~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~ 514 (710)
T 2xdw_A 450 IPMFIVHKKGIKLD--GSHPAFLYGYGGFNISI-------------TPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETW 514 (710)
T ss_dssp EEEEEEEETTCCCS--SCSCEEEECCCCTTCCC-------------CCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHH
T ss_pred EEEEEEecCCCCCC--CCccEEEEEcCCCCCcC-------------CCcccHHHHHHHHhCCcEEEEEccCCCCCCChHH
Confidence 99999999875432 35899999999753211 1111123456777 99999996665544443221
Q ss_pred ---CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-----
Q 004475 573 ---PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG----- 644 (751)
Q Consensus 573 ---~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~----- 644 (751)
.........++|+.+++++|.+++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.+.......
T Consensus 515 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~ 594 (710)
T 2xdw_A 515 HKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHA 594 (710)
T ss_dssp HHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGG
T ss_pred HHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChh
Confidence 111223456799999999999998899999999999999999999999999999999999998875432110
Q ss_pred ccccccc--chhhHHHHHhcCcccccC-----CCCC-CEEEEEcCCCCCCCCChHHHHHHHHHHHhC-------CCcEEE
Q 004475 645 FQTEFRT--LWEATNVYIEMSPITHAN-----KIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGH-------GALSRL 709 (751)
Q Consensus 645 ~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~-P~li~~G~~D~~vp~~~~~~~~~~~~l~~~-------~~~~~~ 709 (751)
+..+... .....+.+..++|+.++. ++++ |+||+||++|.+|| +.++.+++++|+.. +.++++
T Consensus 595 ~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 672 (710)
T 2xdw_A 595 WTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQYIVGRSRKQNNPLLI 672 (710)
T ss_dssp GHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHHHTTTSTTCCSCEEE
T ss_pred HHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccC--hhHHHHHHHHHHhhhccccCCCcCEEE
Confidence 0000011 112234566788999888 7886 99999999999999 99999999999987 889999
Q ss_pred EEeCCCCCcCCcc-ccHHHHHHHHHHHHHHHhcC
Q 004475 710 VLLPFEHHVYAAR-ENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 710 ~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l~~ 742 (751)
+++++++|++... ....+....+.+||.++++.
T Consensus 673 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 673 HVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp EEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998643 23467888999999999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=433.75 Aligned_cols=583 Identities=13% Similarity=0.073 Sum_probs=385.2
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcC---CCCeeeccCCCCc--cccceeeeeEEecCCcEEEEeecCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~---~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.+..+|||++++|++... ......||+++.. +++.++|++.... .....+..++|||||++|+|.+....
T Consensus 111 ~~~p~pdG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSG-----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp ECCCEEETTEEEEEEECS-----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT
T ss_pred cCCCEEECCEEEEEEEcC-----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC
Confidence 345569999999998621 1235899999987 7777776433210 00113668999999999999865321
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCc
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~ 187 (751)
. ...+|+++|+ +|+..+.+.. ..+..++|||| +
T Consensus 186 ~--------------------------------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~ 220 (741)
T 1yr2_A 186 S--------------------------------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D 220 (741)
T ss_dssp C--------------------------------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S
T ss_pred C--------------------------------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-C
Confidence 1 1158999999 6665544222 22358999999 9
Q ss_pred eEEEEEecCCcc-cccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 188 YVLITSMHRPYS-YKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 188 ~i~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
.|+|++...+.. -.........+||++++.++.. +.+...+.. ......+.|||||++ |++.....
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~-l~~~~~~~ 289 (741)
T 1yr2_A 221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL----------PKRGHGASVSSDGRW-VVITSSEG 289 (741)
T ss_dssp EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCE-EEEEEECT
T ss_pred EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC----------CeEEEEEEECCCCCE-EEEEEEcc
Confidence 999987654210 0000111245799999977653 233222111 012347899999999 66654221
Q ss_pred CCCCccccCcccceeeccCCCCCCC--C-ceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGE--K-PEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
.....+||+++++ ++ . .+.+..........++|||+.|+|.++......+|++++++++....+.++
T Consensus 290 -------~~~~~~l~~~d~~---~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 290 -------TDPVNTVHVARVT---NGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp -------TCSCCEEEEEEEE---TTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred -------CCCcceEEEEECC---CCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 0124589999986 33 4 566665443333225699999999987655567899999887411234454
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhce
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 421 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 421 (751)
......... ++|+ +..|++.... ....+|++++++++..+.+...... .+
T Consensus 360 ~~~~~~l~~------~~~~--~~~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~----~v 409 (741)
T 1yr2_A 360 PESKDNLES------VGIA--GNRLFASYIH------------------DAKSQVLAFDLDGKPAGAVSLPGIG----SA 409 (741)
T ss_dssp CCCSSEEEE------EEEE--BTEEEEEEEE------------------TTEEEEEEEETTSCEEEECBCSSSC----EE
T ss_pred cCCCCeEEE------EEEE--CCEEEEEEEE------------------CCEEEEEEEeCCCCceeeccCCCCe----EE
Confidence 332211111 3344 5566666532 1234788889865544444321110 11
Q ss_pred eeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcC
Q 004475 422 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 501 (751)
Q Consensus 422 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P 501 (751)
. .++++||++.|+|+.++...|+.+|++|+.+++.+.+.... ...+...+..+++.+++.+|..|.++++.|
T Consensus 410 ~-------~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~-~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p 481 (741)
T 1yr2_A 410 S-------GLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVH-LTFDPADFRVEQVFYPSKDGTKVPMFIVRR 481 (741)
T ss_dssp E-------EEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCC-CSSCGGGEEEEEEEEECTTSCEEEEEEEEE
T ss_pred E-------EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC-CCCChhHCEEEEEEEEcCCCCEEEEEEEec
Confidence 1 24788999999999999999999999999998877666532 222344567899999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC---CCchhH
Q 004475 502 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL---PNDRFV 578 (751)
Q Consensus 502 ~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~---~~~~~~ 578 (751)
++. .++.|+||++||++.... ..........|+++||+|+++++++..++|... ......
T Consensus 482 ~~~----~~~~p~vl~~hGg~~~~~-------------~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~ 544 (741)
T 1yr2_A 482 KDA----KGPLPTLLYGYGGFNVAL-------------TPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKK 544 (741)
T ss_dssp TTC----CSCCCEEEECCCCTTCCC-------------CCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGT
T ss_pred CCC----CCCCcEEEEECCCCCccC-------------CCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcC
Confidence 864 235899999999863221 111123455788999999996666544443221 111222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-----cccccccch
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-----FQTEFRTLW 653 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-----~~~~~~~~~ 653 (751)
...++|+.+++++|.+++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.+....... +..+...+.
T Consensus 545 ~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 624 (741)
T 1yr2_A 545 QNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPE 624 (741)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTT
T ss_pred CCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCC
Confidence 456899999999999998899999999999999999999999999999999999998875431110 000111111
Q ss_pred --hhHHHHHhcCcccccCC-CCC-CEEEEEcCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCCcCCcc-ccH
Q 004475 654 --EATNVYIEMSPITHANK-IKK-PILIIHGEVDDKVGLFPMQAERFFDALKG---HGALSRLVLLPFEHHVYAAR-ENV 725 (751)
Q Consensus 654 --~~~~~~~~~~~~~~~~~-~~~-P~li~~G~~D~~vp~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~~~~-~~~ 725 (751)
...+.+..++|+.++.+ +++ |+||+||++|.+|| +.++.+++++|+. .+.+++++++++++|.+... ...
T Consensus 625 ~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~ 702 (741)
T 1yr2_A 625 KEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVV--PGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQ 702 (741)
T ss_dssp SHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSC--THHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHH
T ss_pred CHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCC--hhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHH
Confidence 12345577899998887 884 99999999999999 9999999999999 88899999999999997543 234
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 004475 726 MHVIWETDRWLQKYCLSNTS 745 (751)
Q Consensus 726 ~~~~~~~~~fl~~~l~~~~~ 745 (751)
.+....+.+||.++++....
T Consensus 703 ~~~~~~~~~fl~~~l~~~~~ 722 (741)
T 1yr2_A 703 IEETADVQAFLAHFTGLTPR 722 (741)
T ss_dssp HHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcc
Confidence 57888999999999975443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=427.62 Aligned_cols=582 Identities=12% Similarity=0.069 Sum_probs=393.2
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC--ccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--ICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
.+..+++|.+++|..... .....-+|+...++++ +.|.+... ......+..++|||||++|+|........
T Consensus 81 ~~~p~~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~-~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~- 153 (693)
T 3iuj_A 81 EGAPFREGRYHYFFKNDG-----LQNQNVLWRQQEGKPA-EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSD- 153 (693)
T ss_dssp ECCCEEETTEEEEEEECS-----SCSSCEEEEECTTSCC-EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCC-
T ss_pred CCCCEEECCEEEEEEEcC-----CCceeEEEEeCCCCCc-EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCc-
Confidence 445578999999986521 1223466665544443 33322211 00011366889999999999986532211
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCCce-EEeeeeCCCCceEE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV-YTAVEPSPDQKYVL 190 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~~~-~~~~~~SpDG~~i~ 190 (751)
...|+++|+ +|+..+.+.... ...++|| ||+.|+
T Consensus 154 -------------------------------------------~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 154 -------------------------------------------WREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFF 189 (693)
T ss_dssp -------------------------------------------EEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEE
T ss_pred -------------------------------------------eEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEE
Confidence 168999999 776555432222 4688999 999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCC-CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPP-AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~-~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|.+......-.........+||++++.++.. +.+...+. . ......+.|||||++ |++......
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~----------~~~~~~~~~SpDg~~-l~~~~~~~~-- 256 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ----------HHRYVGATVTEDDRF-LLISAANST-- 256 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG----------CCSEEEEEECTTSCE-EEEEEESSS--
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC----------CeEEEEEEEcCCCCE-EEEEEccCC--
Confidence 9987632100000112246799999976543 34433322 1 011236799999999 666542211
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCC-cceeeeecccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRVFE 346 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~~ 346 (751)
...+||+++++.. ....+.++.......-.|+++|+.|+|.++......+|+.++++++.. ..+.++.....
T Consensus 257 ------~~~~i~~~d~~~~-~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 329 (693)
T 3iuj_A 257 ------SGNRLYVKDLSQE-NAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ 329 (693)
T ss_dssp ------SCCEEEEEETTST-TCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred ------CCcEEEEEECCCC-CCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence 2258999998521 225566665444333238999999999987655567999999987521 12455543322
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 426 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 426 (751)
. +.|+++|++|++...+. ....|++++++++..+.+...... .+.
T Consensus 330 ~---------~~~s~~g~~lv~~~~~~------------------g~~~l~~~d~~g~~~~~l~~p~~~----~~~---- 374 (693)
T 3iuj_A 330 V---------LTVHSGSGYLFAEYMVD------------------ATARVEQFDYEGKRVREVALPGLG----SVS---- 374 (693)
T ss_dssp C---------EEEEEETTEEEEEEEET------------------TEEEEEEECTTSCEEEEECCSSSS----EEE----
T ss_pred E---------EEEEEECCEEEEEEEEC------------------CeeEEEEEECCCCeeEEeecCCCc----eEE----
Confidence 1 36999999999888431 234789999987765555322111 111
Q ss_pred CCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCC
Q 004475 427 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQ 506 (751)
Q Consensus 427 ~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~ 506 (751)
.+++++|++.+++...+...|+.+|++|+.+++.+.|+..+.. .+...+..+++.+++.+|..|+++++.|++...
T Consensus 375 ---~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~~ 450 (693)
T 3iuj_A 375 ---GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKL 450 (693)
T ss_dssp ---ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSS-CCGGGEEEEEEEEECTTSCEEEEEEEEESSCCC
T ss_pred ---eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCC-cChhhCeeEEEEEecCCCcEEEEEEEecCCCCC
Confidence 1357889999999999999999999999999998888876543 234456789999999999999999999987543
Q ss_pred CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC---CCchhHHHHHH
Q 004475 507 SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL---PNDRFVEQLVS 583 (751)
Q Consensus 507 ~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~---~~~~~~~~~~~ 583 (751)
.++.|+||++|||+... ...........|+++||+|+.+++++..++|... .........++
T Consensus 451 --~~~~P~ll~~hGg~~~~-------------~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 515 (693)
T 3iuj_A 451 --DGSNPTILYGYGGFDVS-------------LTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFD 515 (693)
T ss_dssp --SSCCCEEEECCCCTTCC-------------CCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred --CCCccEEEEECCCCCcC-------------CCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHH
Confidence 23589999999975321 1111223456888999999997776655554321 11222345689
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-----cccccccchh--h-
Q 004475 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-----FQTEFRTLWE--A- 655 (751)
Q Consensus 584 d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-----~~~~~~~~~~--~- 655 (751)
|+.+++++|.+++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.|....... +..+.+.+.. .
T Consensus 516 D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~ 595 (693)
T 3iuj_A 516 DFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAM 595 (693)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHH
T ss_pred HHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHH
Confidence 9999999999998899999999999999999999999999999999999999885432110 0000111111 1
Q ss_pred HHHHHhcCcccccCC-CCCC-EEEEEcCCCCCCCCChHHHHHHHHHHHhC---CCcEEEEEeCCCCCcCCcc-ccHHHHH
Q 004475 656 TNVYIEMSPITHANK-IKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGH---GALSRLVLLPFEHHVYAAR-ENVMHVI 729 (751)
Q Consensus 656 ~~~~~~~~~~~~~~~-~~~P-~li~~G~~D~~vp~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~H~~~~~-~~~~~~~ 729 (751)
.+.+..++|+.++.+ +++| +||+||++|.+|| +.++.+++++|++. +.+++++++++++|++... ....+..
T Consensus 596 ~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 673 (693)
T 3iuj_A 596 FDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVV--PAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQS 673 (693)
T ss_dssp HHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSC--THHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHH
T ss_pred HHHHHhcCHHHhhcccCCCCceeEEecCCCCCCC--hhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHH
Confidence 234667899999998 8987 9999999999999 99999999999987 4789999999999998653 4556778
Q ss_pred HHHHHHHHHHhcCC
Q 004475 730 WETDRWLQKYCLSN 743 (751)
Q Consensus 730 ~~~~~fl~~~l~~~ 743 (751)
..+.+||.++++..
T Consensus 674 ~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 674 ADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=408.92 Aligned_cols=575 Identities=13% Similarity=0.074 Sum_probs=381.1
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEc---CCC--CeeeccCCC----CccccceeeeeEEe-cCCcEEE
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETG--EAKPLFESP----DICLNAVFGSFVWV-NNSTLLI 102 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~---~~g--~~~~lt~~~----~~~~~~~~~~~~ws-pDg~~l~ 102 (751)
...|. |+|.+++|++... ......+++.+. .++ +.+.|.+.. .... ..+..++|| |||++|+
T Consensus 119 ~~~p~--~~g~~~yy~~~~~-----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~-~~~~~~~~S~PDG~~lA 190 (751)
T 2xe4_A 119 MSAPY--VYGKYRYYTREVK-----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAF-CDVMEVKPAPPEHDLVA 190 (751)
T ss_dssp ECCCE--EETTEEEEEEECT-----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSC-CEEEEEEECTTTTCEEE
T ss_pred CCCCe--EECCEEEEEEECC-----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCe-EEEeeeEecCCCCCEEE
Confidence 44454 7999999987521 122456888876 444 444443321 0010 135688999 9999999
Q ss_pred EeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC--ceEE
Q 004475 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYT 178 (751)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~--~~~~ 178 (751)
|........ ..+||++|+ +| + .++.. ....
T Consensus 191 y~~~~~G~~--------------------------------------------~~~l~v~dl~~g~~--~l~~~~~~~~~ 224 (751)
T 2xe4_A 191 FSVDMSGNE--------------------------------------------VYTIEFKRISDPSQ--TIADKVSGTNG 224 (751)
T ss_dssp EEEESSSSS--------------------------------------------CEEEEEEETTCTTC--CCCCCEEEECS
T ss_pred EEEeCCCCc--------------------------------------------eEEEEEEECCCCCE--eCCccccCcee
Confidence 996532111 157999999 55 4 23332 2345
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
.++|||||+.|+|++.+.. ....+||++++.+++.+ .+...+.. .....+.|||||++
T Consensus 225 ~~~WspDg~~l~y~~~d~~--------~~~~~v~~~~lgt~~~~~~lv~~~~~~-----------~~~~~~~~SpDg~~- 284 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDET--------LRENKVWRHVMGKLQSEDVCLYEEHNP-----------LFSAFMYKAADTNT- 284 (751)
T ss_dssp CCEECSSTTEEEEEEECTT--------CCEEEEEEEETTSCGGGCEEEEECCCT-----------TCEEEEEECTTSSE-
T ss_pred eEEEecCCCEEEEEEECCC--------CCCCEEEEEECCCCchhcEEEEecCCC-----------ceEEEEEECCCCCE-
Confidence 7999999999999876421 11358999999876432 33222111 11225799999999
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCc--eEeEeeceeEEEEEecC---CceEEEeeeec-ccceeEEEecC
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFSVSWCDD---SLALVNETWYK-TSQTRTWLVCP 330 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~spd---g~~l~~~~~~~-~~~~~l~~~~~ 330 (751)
|++.... ....+||+++++.. .+.. +.++..... +.|+++ |+.|+|.++.. ....+||.+++
T Consensus 285 l~~~~~~---------~~~~~l~~~d~~~~-~~~~~~~~l~~~~~~--~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 285 LCIGSQS---------PETAEVHLLDLRKG-NAHNTLEIVRPREKG--VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp EEEEEEC---------SSCEEEEEEESSSC-TTCCCEEESSCCCTT--CCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred EEEEecC---------CCCceEEEEECCCC-CCCceeEEeecCCCC--ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence 6665421 12458999998621 1234 445433211 345555 89999998765 45679999998
Q ss_pred CCCCCccee-eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec-------C
Q 004475 331 GSKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI-------N 402 (751)
Q Consensus 331 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-------~ 402 (751)
+++ ...+. +....... .. ..++++++.|++..... ....|+++++ +
T Consensus 353 ~~~-~~~~~~li~~~~~~-~l------~~~~~~~~~lv~~~~~~------------------g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 353 GQP-SDWSHVLVDHSEDV-FM------ESIAVRSNYLVVAGRRA------------------GLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TST-TCCCCEEECCCSSE-EE------EEEEECSSEEEEEEEET------------------TEEEEEEEECCTTTSCCC
T ss_pred CCc-ccceeeEECCCCCc-EE------EEEEEECCEEEEEEEeC------------------CEEEEEEEeccccccccc
Confidence 753 23233 43332211 00 23566778888877431 2447888886 5
Q ss_pred CCc-eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCC-CCCccCCc
Q 004475 403 TGS-KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP-YPTLASLQ 480 (751)
Q Consensus 403 ~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~-~~~~~~~~ 480 (751)
+++ .+.|...... ....+.. ...+++|++.++|+.++...|+.+|.+|+.+++.+.|+..+.. ..+...+.
T Consensus 407 ~g~~~~~l~l~~~~----~~~~~~~---~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 479 (751)
T 2xe4_A 407 AGTGLREVVMEEPI----FTVHLVE---SQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFDAANYK 479 (751)
T ss_dssp TTTCCEECCCCCSS----CEEEECG---GGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCCGGGEE
T ss_pred CCccceEECCCCce----eEEEecc---CcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCCccceE
Confidence 565 5555221110 0111100 0001568899999999999999999999999998888876532 22334467
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.+.+.+++.+|..|.++++.|++..+. +++|+||++|||+..... ..| ......|+++||+|+.+
T Consensus 480 ~~~~~~~s~dG~~i~~~l~~p~~~~~~--~~~P~vl~~HGg~~~~~~---------~~~----~~~~~~l~~~G~~v~~~ 544 (751)
T 2xe4_A 480 VERRFATAPDQTKIPLSVVYHKDLDMS--QPQPCMLYGYGSYGLSMD---------PQF----SIQHLPYCDRGMIFAIA 544 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEEETTSCTT--SCCCEEEECCCCTTCCCC---------CCC----CGGGHHHHTTTCEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEcCCCCCCC--CCccEEEEECCCCCcCCC---------Ccc----hHHHHHHHhCCcEEEEE
Confidence 899999999999999999999875332 358999999997532110 111 12345788999999997
Q ss_pred CCCCCCCCCCCC----CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 561 PSIPIIGEGDKL----PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 561 ~~~~~~g~g~~~----~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
++++..++|... .........++|+.+++++|.+++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.
T Consensus 545 d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~ 624 (751)
T 2xe4_A 545 HIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFV 624 (751)
T ss_dssp CCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCC
T ss_pred eeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcc
Confidence 776655555421 1112234678999999999999988999999999999999999999999999999999999987
Q ss_pred CCCCC------ccC--cccccccc--hhhHHHHHhcCcccccCCCCCC-EEEEEcCCCCCCCCChHHHHHHHHHHHhCC-
Q 004475 637 NKTLT------PFG--FQTEFRTL--WEATNVYIEMSPITHANKIKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGHG- 704 (751)
Q Consensus 637 d~~~~------~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~P-~li~~G~~D~~vp~~~~~~~~~~~~l~~~~- 704 (751)
+.... +.. .......+ -...+.+...+|+.++.++++| +||+||++|.+|| +.++.+++++|+..+
T Consensus 625 d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp--~~~~~~~~~~L~~~~~ 702 (751)
T 2xe4_A 625 DVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVA--YWEPAKWVSKLRECKT 702 (751)
T ss_dssp CHHHHHTCTTSTTHHHHTTTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSC--THHHHHHHHHHHHHCC
T ss_pred hHHhhhcccCcccchhhHHHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCC--HHHHHHHHHHHHhcCC
Confidence 73211 000 00011111 0112345678999999999997 9999999999999 999999999999874
Q ss_pred --CcEEEEEeCCCCCcCCccc-cHHHHHHHHHHHHHHHhcCC
Q 004475 705 --ALSRLVLLPFEHHVYAARE-NVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 705 --~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~fl~~~l~~~ 743 (751)
..+.+.++++++|++.... ........+.+||.++++..
T Consensus 703 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~ 744 (751)
T 2xe4_A 703 DNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKST 744 (751)
T ss_dssp SCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCC
Confidence 4567778899999986432 34456678999999998753
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=318.63 Aligned_cols=509 Identities=11% Similarity=0.062 Sum_probs=326.5
Q ss_pred eEEEEEcC-CCCce--ecCCC--c------eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eee
Q 004475 157 AQLVLGSL-DGTAK--DFGTP--A------VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRE 223 (751)
Q Consensus 157 ~~l~~~~~-~G~~~--~lt~~--~------~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~ 223 (751)
..+..+|+ +|+.. .+... . .+..++|- |+..++|.+...+.. .........++++.+.+.. -+.
T Consensus 156 ~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~Gt~~~~~~~ 232 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE--ITSSLYPNSLYIWKRGESIEKAKK 232 (711)
T ss_dssp EEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC--BCTTSSBCEEEEEETTSCGGGCEE
T ss_pred eEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC--cCcCCCCCEEEEEECCCChHHCeE
Confidence 57788888 66321 11200 0 11345887 777777765433321 1122335779999887653 334
Q ss_pred eccCCCCCCCCCccCCccCCCceeeeecCCCce--EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE
Q 004475 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPST--LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF 301 (751)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~--i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 301 (751)
+...+.... .-...-++|+++. ..+++... .....++|+++++..+ +....|. .+...
T Consensus 233 v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~-~~~~~l~-~~~~~ 292 (711)
T 4hvt_A 233 LFEVPKEYI-----------YVSAGKLLSDTISSSLIFISANK-------DFYNYDNYILDTKYKN-LKLQKIN-MPSDA 292 (711)
T ss_dssp EEECCTTSC-----------EEEEEESSCTTTCSSEEEEEEES-------SSSCEEEEEEECSSSS-CEEEECC-SCTTC
T ss_pred EeccCCCce-----------EEEEEEecCCCceEEEEEEEEec-------ccCceeEEEEcCCCCC-CcceEee-cCCcc
Confidence 433322110 0134556777752 12322110 1123578888764111 2223331 11112
Q ss_pred EEEEecCCceEEEee-ee-----cccceeEEEecCCCCC------Ccceeee-ecccccccCCCCCCCeeeCCCCCEEEE
Q 004475 302 SVSWCDDSLALVNET-WY-----KTSQTRTWLVCPGSKD------VAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIA 368 (751)
Q Consensus 302 ~~~~spdg~~l~~~~-~~-----~~~~~~l~~~~~~~~~------~~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~~ 368 (751)
.+.++.+++.+++.. +. .....+|+.+++++.. ...+.+. ......... +.|+.| .|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~--~l~~ 364 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF------ISTTKD--RVFL 364 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE------EEECSS--CEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE------EEEECC--EEEE
Confidence 234566776555442 11 1134578888887631 2233322 222111111 556665 3555
Q ss_pred eeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc--eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec
Q 004475 369 KIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS--KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 446 (751)
...+ .....|+++++.+|+ .+.+...+.. ..... .+.+++++.+++..++
T Consensus 365 ~~~~------------------~~~~~l~~~~~~~g~~~~~~~i~lp~~----~~~~~------~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 365 ATYD------------------NVVAKVVTFTLENEQWTKPVVLKLPYQ----NAIFG------MSSYEEEEEALITIEN 416 (711)
T ss_dssp EEEE------------------TTEEEEEEECEETTEECCCEEECCCST----TCEEE------EECCTTCSCEEEEEEC
T ss_pred EEEE------------------CCEEEEEEEECCCCceEEEeccCCCCC----eEEEE------EeecCcCCEEEEEEec
Confidence 4422 123478888887774 3331221110 01111 2456889999999999
Q ss_pred CCCCCeEEEEEcCCCceeEeecCCCCCCCccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCc
Q 004475 447 KTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSK 526 (751)
Q Consensus 447 ~~~~~~l~~~~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~ 526 (751)
...|+.+|++|+. ++.++++..+... +...+..+++.+++.+|.+|+++++.|++..+. +++|+||++|||++...
T Consensus 417 ~~~P~~~~~~d~~-~~~~~l~~~~~~~-~~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~--~~~P~vl~~HGG~~~~~ 492 (711)
T 4hvt_A 417 SIVPPTIYLWVKT-HELKIIRKALYSF-DSENYVLEQKEATSFDGVKIPYFLVYKKGIKFD--GKNPTLLEAYGGFQVIN 492 (711)
T ss_dssp SSSCCEEEEECTT-SCEEEEECCSSCC-CGGGEEEEEEEEECTTSCEEEEEEEEETTCCCS--SCCCEEEECCCCTTCCC
T ss_pred CCCCCEEEEEeCC-CcEEEEecCCccc-CcccCeeEEEEEECCCCeEEEEEEEecCCCCCC--CCccEEEEECCCCCCCC
Confidence 9999999999988 8888888765432 334457899999999999999999999875433 35899999999864321
Q ss_pred ccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC---CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 004475 527 DAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRI 603 (751)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~---~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i 603 (751)
. ..+.....+.|+++||+|+.+++++..++|.. ..........++|+.+++++|.+++.+|++||
T Consensus 493 ~------------~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI 560 (711)
T 4hvt_A 493 A------------PYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYL 560 (711)
T ss_dssp C------------CCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGE
T ss_pred C------------CcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccE
Confidence 1 01111222478899999999877766666543 12223345678999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-----cccccccch--hhHHHHHhcCcccccCCCCC--C
Q 004475 604 AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-----FQTEFRTLW--EATNVYIEMSPITHANKIKK--P 674 (751)
Q Consensus 604 ~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--P 674 (751)
+|+|+|+||++++.++.++|++|+++|+.+|++|+...... +..+.+.++ ...+.+..++|+.+++++++ |
T Consensus 561 ~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i~~~pP 640 (711)
T 4hvt_A 561 GIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPT 640 (711)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTTSCCCE
T ss_pred EEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999885432110 001111121 13345778899999999886 9
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHH-HhCCCcEEEEEeCCCCCcCCcc-ccHHHHHHHHHHHHHHHhcC
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDAL-KGHGALSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l~~ 742 (751)
+||+||++|.+|| +.++.+++++| ++.+.+++++++|+++|++... .........+.+||.++++.
T Consensus 641 vLii~G~~D~~Vp--~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~ 708 (711)
T 4hvt_A 641 VLITDSVLDQRVH--PWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708 (711)
T ss_dssp EEEEEETTCCSSC--THHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCCCcCC--hHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999 99999999999 9999999999999999998543 23456677889999999874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=239.08 Aligned_cols=351 Identities=11% Similarity=0.057 Sum_probs=221.4
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc---cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~---~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
..++|+-...+ ++.++++..+... ....|+|||||++|||++.. ++..+||++++++++.++++..
T Consensus 10 ~~~~~~~~~~g----~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-------~g~~~l~~~d~~~g~~~~lt~~ 78 (388)
T 3pe7_A 10 TFDTYQDASTG----AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF-------DGPWNYYLLDLNTQVATQLTEG 78 (388)
T ss_dssp CCEEEECTTTC----CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTCEEEECCCS
T ss_pred cceEEecCCCC----cceEEecCCcccccchhhcCccCCCCCCEEEEEEcC-------CCCceEEEEeCCCCceEEeeeC
Confidence 34677766666 7788887543221 12349999999999998742 3456899999999999999876
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.... +..++|||||++|+|.... ..|+
T Consensus 79 ~~~~----~~~~~~spdg~~l~~~~~~-------------------------------------------------~~l~ 105 (388)
T 3pe7_A 79 RGDN----TFGGFLSPDDDALFYVKDG-------------------------------------------------RNLM 105 (388)
T ss_dssp SCBC----SSSCEECTTSSEEEEEETT-------------------------------------------------TEEE
T ss_pred CCCC----ccceEEcCCCCEEEEEeCC-------------------------------------------------CeEE
Confidence 6532 2356999999999998531 4799
Q ss_pred EEcC-CCCceecCCC--ceEE--eeeeCCCCceEEEEEecCCcccc---------cccCCCceeEEEEeCCCceeeeecc
Q 004475 161 LGSL-DGTAKDFGTP--AVYT--AVEPSPDQKYVLITSMHRPYSYK---------VPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 161 ~~~~-~G~~~~lt~~--~~~~--~~~~SpDG~~i~~~~~~~~~~~~---------~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
++++ +|+.+.+... .... ...++|||+.|+........... .........|+++|+++++.+.+..
T Consensus 106 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 185 (388)
T 3pe7_A 106 RVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ 185 (388)
T ss_dssp EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec
Confidence 9999 6666655433 3232 23459999998865432210000 0001123689999999888877754
Q ss_pred CCCCCCCCCccCCccCCCceeeeec-CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec--eeEE-
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFS- 302 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~- 302 (751)
... .+..+.||| ||++ |+++.... . .....+|++++++ ++..+.++... ..+.
T Consensus 186 ~~~-------------~~~~~~~sp~dg~~-l~~~~~~~-~-----~~~~~~l~~~d~~---~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 186 ENQ-------------WLGHPIYRPYDDST-VAFCHEGP-H-----DLVDARMWLINED---GTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp ESS-------------CEEEEEEETTEEEE-EEEEECSC-T-----TTSSCSEEEEETT---SCCCEESCCCCTTEEEEE
T ss_pred CCc-------------cccccEECCCCCCE-EEEEEecC-C-----CCCcceEEEEeCC---CCceEEeeeCCCCccccc
Confidence 332 234779999 9999 77765211 0 0123589999986 56666776554 2455
Q ss_pred EEEecCCceEEEeeeeccc-ceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 VSWCDDSLALVNETWYKTS-QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
+.|||||+.|+|.+..... ...||++++.++ +.+.++......... ......+|||||+.|++...+.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~-------- 311 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETL--ENRQLTSMPACSHLM-SNYDGSLMVGDGSDAPVDVQDD-------- 311 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTC--CEEEEEEECCEEEEE-ECTTSSEEEEEECCC---------------
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCC--ceEEEEcCCCceeee-ecCCCCeEccCCCcceeEeeec--------
Confidence 8999999999998754332 235999999985 445554432200000 0001146999999999876210
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeee----ecCCcceeeccCCCEEEEEEecCCCCCeEEEEE
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL----VFGQGEEDINLNQLKILTSKESKTEITQYHILS 457 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~ 457 (751)
.+.. ......|++||+++++.+++...... ...+ ......++|||||++|+|.... .....||+++
T Consensus 312 ---~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~ 381 (388)
T 3pe7_A 312 ---SGYK-IENDPFLYVFNMKNGTQHRVARHDTS-----WKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCC-----CCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEE
T ss_pred ---cccc-cCCCCEEEEEeccCCceEEeccccCc-----ccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEE
Confidence 0000 12345899999999988877655321 0000 0012336899999999998644 4567899999
Q ss_pred cCCCc
Q 004475 458 WPLKK 462 (751)
Q Consensus 458 ~~~g~ 462 (751)
+..+.
T Consensus 382 l~~~~ 386 (388)
T 3pe7_A 382 LPESV 386 (388)
T ss_dssp CCGGG
T ss_pred CChhc
Confidence 87643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=241.22 Aligned_cols=334 Identities=10% Similarity=0.023 Sum_probs=213.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc-ccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
....++|||||++|+. . ...|+++++++|+.+++....... .......++|||||++|+|.+.....
T Consensus 18 ~~~~~~w~~dg~~~~~-----------~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYK-----------Q-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ 85 (740)
T ss_dssp CCCCEEECSSSEEEEE-----------E-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred cccccEECCCCcEEEE-----------c-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence 3568999999977766 2 368999999999987775554321 11112348999999999998542111
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
+.+.....+|++|+ +|+.++|+.. ..+..++|||||++
T Consensus 86 ----------------------------------------~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~ 125 (740)
T 4a5s_A 86 ----------------------------------------WRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHK 125 (740)
T ss_dssp ----------------------------------------SSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTC
T ss_pred ----------------------------------------EEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCE
Confidence 11113368999999 7788888876 77889999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC----CCCccCCc--cCCCceeeeecCCCceEEEEEe
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED----IPVCYNSV--REGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~----~~~~~~~~--~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|+|.+. .+||++++++++.++|+....... .+.++-.+ -...+.+.|||||++ |++.+.
T Consensus 126 la~~~~--------------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~ 190 (740)
T 4a5s_A 126 LAYVWN--------------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQF 190 (740)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEE
T ss_pred EEEEEC--------------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE-EEEEEE
Confidence 999853 369999999888888765322110 01000000 012346899999999 777654
Q ss_pred ccCCCCcc------------------------ccCcccceeeccCCCCCC---C---CceEeEe------eceeEE-EEE
Q 004475 263 QDRGDANV------------------------EVSPRDIIYTQPAEPAEG---E---KPEILHK------LDLRFS-VSW 305 (751)
Q Consensus 263 ~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~---~---~~~~l~~------~~~~~~-~~~ 305 (751)
.+...... .......|++++++ + + ....+.. ....+. ++|
T Consensus 191 d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w 267 (740)
T 4a5s_A 191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD---SLSSVTNATSIQITAPASMLIGDHYLCDVTW 267 (740)
T ss_dssp ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT---SCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC---CCCCCCcceEEEecCCccCCCCCeEEEEEEE
Confidence 32211100 00112378999986 4 3 3444443 334455 999
Q ss_pred ecCCceEEEeeeecccceeEEEecCCCCCC-----cceeee-ecccccccCCCCCCCeeeCCCCCEEE-EeeeecCCcce
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCPGSKDV-----APRVLF-DRVFENVYSDPGSPMMTRTSTGTNVI-AKIKKENDEQI 378 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~l~-~~~~~~~~~~~~~~~~~~spDG~~l~-~~~~~~~~~~~ 378 (751)
||||+.+++..++......|++++++++.. ..+.+. ......+.. .....++|||||+.|+ +.+.+
T Consensus 268 spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~-~~~~~p~fspDG~~l~~~~s~~------ 340 (740)
T 4a5s_A 268 ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR-FRPSEPHFTLDGNSFYKIISNE------ 340 (740)
T ss_dssp EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS-SSCCCCEECTTSSEEEEEEECT------
T ss_pred eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc-CcCCCceEcCCCCEEEEEEEcC------
Confidence 999998888776655567899999988520 122232 222111110 0011277999999988 55521
Q ss_pred EEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec--C-CCCCeEEE
Q 004475 379 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES--K-TEITQYHI 455 (751)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~-~~~~~l~~ 455 (751)
+ ...+|+++|+++++.++|+..... +... +++|++.|+|.... . .....||.
T Consensus 341 ------~------G~~~l~~~~~~~~~~~~lT~g~~~-----v~~~--------~~~d~~~i~f~~~~~~~~~~~~~ly~ 395 (740)
T 4a5s_A 341 ------E------GYRHICYFQIDKKDCTFITKGTWE-----VIGI--------EALTSDYLYYISNEYKGMPGGRNLYK 395 (740)
T ss_dssp ------T------SCEEEEEEETTCSSCEESCCSSSC-----EEEE--------EEECSSEEEEEESCGGGCTTCBEEEE
T ss_pred ------C------CceEEEEEECCCCceEecccCCEE-----EEEE--------EEEeCCEEEEEEecCCCCCceeEEEE
Confidence 1 245899999999988888766432 2222 33568899998754 1 23457999
Q ss_pred EEcCCCcee-Eee
Q 004475 456 LSWPLKKSS-QIT 467 (751)
Q Consensus 456 ~~~~~g~~~-~lt 467 (751)
+++++++.+ +||
T Consensus 396 v~~~g~~~~~~lt 408 (740)
T 4a5s_A 396 IQLIDYTKVTCLS 408 (740)
T ss_dssp EETTEEEEEEESS
T ss_pred EECCCCCcceeec
Confidence 999877654 666
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=216.17 Aligned_cols=324 Identities=10% Similarity=0.060 Sum_probs=199.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
+..|+|||||++|||+... .+..+||++++++++.++++...... ...+.|||||++|+|.+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~spdg~~l~~~~~~----- 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGDN----TFGGFISTDERAFFYVKNE----- 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCBC----TTTCEECTTSSEEEEEETT-----
T ss_pred eecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCCc----cccceECCCCCEEEEEEcC-----
Confidence 6789999999999998642 34568999999999999997655421 2247999999999998532
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC--ceEEe----------
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTA---------- 179 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~--~~~~~---------- 179 (751)
.+||++++ +|+.++++.. .....
T Consensus 102 --------------------------------------------~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 102 --------------------------------------------LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred --------------------------------------------CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC
Confidence 36889998 5566666542 21111
Q ss_pred ---------eeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeee
Q 004475 180 ---------VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (751)
Q Consensus 180 ---------~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 250 (751)
+.|||||+++++.... .......|+++|+++++.+.+.... ..+..+.||
T Consensus 138 ~~~~~~~~~~~~spdg~~~~~~~~~--------~~~~~~~l~~~d~~~g~~~~~~~~~-------------~~~~~~~~s 196 (396)
T 3c5m_A 138 KLVGIEILKRDWQPLTSWEKFAEFY--------HTNPTCRLIKVDIETGELEVIHQDT-------------AWLGHPIYR 196 (396)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHH--------HTCCCEEEEEEETTTCCEEEEEEES-------------SCEEEEEEE
T ss_pred ccccccccccccCCCCcceeeeeec--------cCCCcceEEEEECCCCcEEeeccCC-------------cccccceEC
Confidence 3556666555543210 0012457999999988777665322 123478999
Q ss_pred c-CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--ceeEE-EEEecCCceEEEeeeecc-cceeE
Q 004475 251 A-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFS-VSWCDDSLALVNETWYKT-SQTRT 325 (751)
Q Consensus 251 p-dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~-~~~spdg~~l~~~~~~~~-~~~~l 325 (751)
| ||++ |+++.. +.. ......|++++++ ++..+.+... ...+. +.|||||+.|+|.+.... ....|
T Consensus 197 p~dg~~-l~~~~~--~~~----~~~~~~l~~~d~~---~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 197 PFDDST-VGFCHE--GPH----DLVDARMWLVNED---GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp TTEEEE-EEEEEC--SCS----SSCSCCCEEEETT---SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred CCCCCE-EEEEec--CCC----CCCCceEEEEECC---CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 9 8888 777642 111 0112579999886 5555555543 23455 899999999999875432 22359
Q ss_pred EEecCCCCCCcceeeeecccccccCCCCCCCeeeCC-CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 326 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
+++++.++ ..+.+....... +.||| ||+.|++..... . +....++.........|++||++++
T Consensus 267 ~~~d~~~g--~~~~l~~~~~~~---------~~~s~~dg~~l~~~~~~~--p---~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 267 YKANPETL--ENEEVMVMPPCS---------HLMSNFDGSLMVGDGCDA--P---VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEECTTTC--CEEEEEECCSEE---------EEEECSSSSEEEEEECCC---------------CCCCCCEEEEEETTTT
T ss_pred EEEECCCC--CeEEeeeCCCCC---------CCccCCCCceEEEecCCc--c---eeeccccccccCCCCcEEEEecccC
Confidence 99999874 444554322111 67999 999877754110 0 0000000000123458999999988
Q ss_pred ceeEEeeccchh-hhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 405 SKERIWESNREK-YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 405 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
+.+++....... .+.. ........++|||||+.|+|.... .....||++++.+++.+.+
T Consensus 331 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~s~~-~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 SAQKLCKHSTSWDVLDG--DRQITHPHPSFTPNDDGVLFTSDF-EGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp BCCEEEECCCCCCCBTT--BSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCTTCC---
T ss_pred ceEEccCCCCccccccc--cccCCCCCceEccCCCeEEEEecC-CCCceEEEEEEcccccccc
Confidence 877775443200 0000 000012236899999999988654 3467899999988776543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=230.05 Aligned_cols=329 Identities=13% Similarity=0.142 Sum_probs=209.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc--------------------cceeee
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL--------------------NAVFGS 91 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~--------------------~~~~~~ 91 (751)
.+..++|||||++|||++..+ .......||++++++|+.++++......- ...+..
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d----~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKD----SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCS----SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCceEecCCCEEEEEeccC----CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 477899999999999986421 01224699999999999888875432110 012568
Q ss_pred eEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC---C
Q 004475 92 FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG---T 167 (751)
Q Consensus 92 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G---~ 167 (751)
++|||||++|+|.+. ..|+++++ +| +
T Consensus 114 ~~~SpDg~~l~~~~~--------------------------------------------------~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG--------------------------------------------------GELYLYDLKQEGKAA 143 (741)
T ss_dssp CEECTTSSEEEEEET--------------------------------------------------TEEEEEESSSCSTTS
T ss_pred eEECCCCCEEEEEeC--------------------------------------------------CcEEEEECCCCCcce
Confidence 899999999999843 37999999 66 6
Q ss_pred ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC---CCCccCC-ccC
Q 004475 168 AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED---IPVCYNS-VRE 242 (751)
Q Consensus 168 ~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~---~~~~~~~-~~~ 242 (751)
.++++.. ..+..++|||||++|++.+.. +|++|++++++.++++....... .+.++.. ...
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~~--------------~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRGR--------------NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEETT--------------EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSC
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeCC--------------cEEEEecCCCCEEEeccCCccceeccccceeeeeccc
Confidence 7788776 778899999999999998532 69999999888777654321100 0000000 001
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCc---------------------cccCcccceeeccCCCCCC-CCceEeEe---e
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDAN---------------------VEVSPRDIIYTQPAEPAEG-EKPEILHK---L 297 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~-~~~~~l~~---~ 297 (751)
.+..++|||||++ |++.+........ ........|++++++ + +....+.. .
T Consensus 210 ~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~ 285 (741)
T 2ecf_A 210 RHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA---EQAQTQWIDLGKEQ 285 (741)
T ss_dssp CCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS---TTCCCEEECCCSCS
T ss_pred cccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC---CCCceEEecCCCCc
Confidence 1357899999999 7776532211100 000112378999886 4 45555442 3
Q ss_pred ceeEE-EEEecCCceEEEeeee-cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 298 DLRFS-VSWCDDSLALVNETWY-KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
...+. ++| |||+.|++.... ......|+++++.++ ..+.+.......... ....++|||||+ +++.+..
T Consensus 286 ~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~--~~~~~~~spdg~-~~~~~~~--- 356 (741)
T 2ecf_A 286 DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWVP--LHNSLRFLDDGS-ILWSSER--- 356 (741)
T ss_dssp SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCCC--CCSCCEECTTSC-EEEEECT---
T ss_pred ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcCC--cCCceEECCCCe-EEEEecC---
Confidence 34556 999 999999988743 334578999999885 444554332211000 001278999999 5555521
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCC-CCeEE
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTE-ITQYH 454 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~~l~ 454 (751)
....+||+++++++ .+.+...+.. +... ..|||||+.|++....... ...||
T Consensus 357 ---------------~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~------~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 357 ---------------TGFQHLYRIDSKGK-AAALTHGNWS-----VDEL------LAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp ---------------TSSCEEEEECSSSC-EEESCCSSSC-----EEEE------EEEETTTTEEEEEECSSCTTCBEEE
T ss_pred ---------------CCccEEEEEcCCCC-eeeeeecceE-----EEeE------eEEeCCCCEEEEEEeCCCCceEEEE
Confidence 12358999998765 5555443321 1111 2599999999988654321 34588
Q ss_pred EEEcCCCceeEeec
Q 004475 455 ILSWPLKKSSQITN 468 (751)
Q Consensus 455 ~~~~~~g~~~~lt~ 468 (751)
.++..++..++|+.
T Consensus 410 ~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 410 AVPLQGGQPQRLSK 423 (741)
T ss_dssp EEETTCCCCEECCC
T ss_pred EEEcCCCCeeeccc
Confidence 88876665676664
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=208.24 Aligned_cols=238 Identities=15% Similarity=0.124 Sum_probs=169.5
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
++...++..+.+++..|....+ .++.|+||++||+||..+. .......+..|+++||.|+++ +
T Consensus 18 ~~~~~~g~~l~~~~~~~~~~~~--~~~~p~vv~~HGgg~~~~~------------~~~~~~~~~~l~~~G~~v~~~---d 80 (276)
T 3hxk_A 18 TFSLNDTAWVDFYQLQNPRQNE--NYTFPAIIICPGGGYQHIS------------QRESDPLALAFLAQGYQVLLL---N 80 (276)
T ss_dssp ECCCBTTBEEEEECCCC--------CCBCEEEEECCSTTTSCC------------GGGSHHHHHHHHHTTCEEEEE---E
T ss_pred cccCCCCeEEEEEEeCCccccc--CCCCCEEEEEcCCccccCC------------chhhHHHHHHHHHCCCEEEEe---c
Confidence 3445567777766655543211 2458999999998754321 111234567888999999994 4
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEccCCCCCCC
Q 004475 565 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 565 ~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~d~~~ 640 (751)
++|+|.+.... ......+|+..++++++++. .+|+++|+|+||||||.+|+.++.+ .+.+++++|+.+|..+...
T Consensus 81 ~~g~g~s~~~~-~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~ 159 (276)
T 3hxk_A 81 YTVMNKGTNYN-FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTF 159 (276)
T ss_dssp CCCTTSCCCSC-THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTS
T ss_pred CccCCCcCCCC-cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHh
Confidence 45555543322 33467889999999998864 3788999999999999999999998 6789999999999876332
Q ss_pred CccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 641 TPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
. +.......... ..+. ...++...+.++++|+|++||++|.++| +.++..+++.+++.+.+++++++++++|.+.
T Consensus 160 ~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 234 (276)
T 3hxk_A 160 G-WPSDLSHFNFE-IENI-SEYNISEKVTSSTPPTFIWHTADDEGVP--IYNSLKYCDRLSKHQVPFEAHFFESGPHGVS 234 (276)
T ss_dssp S-CSSSSSSSCCC-CSCC-GGGBTTTTCCTTSCCEEEEEETTCSSSC--THHHHHHHHHHHTTTCCEEEEEESCCCTTCT
T ss_pred h-CCcchhhhhcC-chhh-hhCChhhccccCCCCEEEEecCCCceeC--hHHHHHHHHHHHHcCCCeEEEEECCCCCCcc
Confidence 2 11100000000 0111 4456666778889999999999999999 9999999999999999999999999999886
Q ss_pred ccc------------cHHHHHHHHHHHHHHHhcCCCC
Q 004475 721 ARE------------NVMHVIWETDRWLQKYCLSNTS 745 (751)
Q Consensus 721 ~~~------------~~~~~~~~~~~fl~~~l~~~~~ 745 (751)
... ....+++.+.+||+++.+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~ 271 (276)
T 3hxk_A 235 LANRTTAPSDAYCLPSVHRWVSWASDWLERQIKNLEH 271 (276)
T ss_dssp TCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC-
T ss_pred ccCccccccccccCchHHHHHHHHHHHHHhCcccccc
Confidence 433 2467888999999999875443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=215.23 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=197.2
Q ss_pred ceeEEeec--CCCCCCCCcc---cccCCCCcccccceeecC--------------CCCeEEEEEeecccccccCCceeEE
Q 004475 5 TGIGIHRL--LPDDSLGPEK---EVHGYPDGAKINFVSWSP--------------DGKRIAFSVRVDEEDNVSSCKLRVW 65 (751)
Q Consensus 5 ~~~~~~~~--~~~~~~g~~~---~l~~~~~~~~~~~p~~SP--------------DG~~iaf~~~~~~~~~~~~~~~~l~ 65 (751)
..|++||+ .+ |+.. .+.. ....+...++++ .+++|+|++..+ .......|+
T Consensus 93 ~~i~lwd~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~----~~~~~~~i~ 162 (415)
T 2hqs_A 93 VAYQLVDTGGAP----GTVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTN----GGQFPYELR 162 (415)
T ss_dssp EEEEEEECSSST----TCEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECS----SSSCCEEEE
T ss_pred EEEEEEeCCCCC----CCEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecC----CCCccceEE
Confidence 36899999 77 7643 1221 111234444443 488999987521 001227999
Q ss_pred EEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCc
Q 004475 66 IADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDE 145 (751)
Q Consensus 66 i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (751)
+++++++..+.++.... .+..++|||||++|++.+.+..
T Consensus 163 i~d~~g~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~------------------------------------ 201 (415)
T 2hqs_A 163 VSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESG------------------------------------ 201 (415)
T ss_dssp EEETTSCSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTS------------------------------------
T ss_pred EEcCCCCCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCC------------------------------------
Confidence 99999888888865443 3678999999999999864311
Q ss_pred cchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee
Q 004475 146 YDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (751)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (751)
...|+++|+ +|+.++++.. ..+..++|||||++|+|+..... ...|++||+++++.++
T Consensus 202 ----------~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g----------~~~i~~~d~~~~~~~~ 261 (415)
T 2hqs_A 202 ----------RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----------SLNLYVMDLASGQIRQ 261 (415)
T ss_dssp ----------SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTTCCEEE
T ss_pred ----------CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC----------CceEEEEECCCCCEEe
Confidence 148999999 7777777766 67889999999999998764321 3579999999887776
Q ss_pred eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-
Q 004475 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS- 302 (751)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~- 302 (751)
++.... .+..++|||||++ |++.+.. ....+||+++++ ++....++.......
T Consensus 262 l~~~~~-------------~~~~~~~spdg~~-l~~~s~~---------~g~~~i~~~d~~---~~~~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 262 VTDGRS-------------NNTEPTWFPDSQN-LAFTSDQ---------AGRPQVYKVNIN---GGAPQRITWEGSQNQD 315 (415)
T ss_dssp CCCCSS-------------CEEEEEECTTSSE-EEEEECT---------TSSCEEEEEETT---SSCCEECCCSSSEEEE
T ss_pred CcCCCC-------------cccceEECCCCCE-EEEEECC---------CCCcEEEEEECC---CCCEEEEecCCCcccC
Confidence 654332 2447899999998 7776521 122479999986 555566655555566
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
+.|||||++|++..... +...|++++++++ +.+.++... .... ++|||||+.|++.+.+.
T Consensus 316 ~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~--~~~~l~~~~--~~~~------~~~spdg~~l~~~s~~~--------- 375 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLSSTF--LDET------PSLAPNGTMVIYSSSQG--------- 375 (415)
T ss_dssp EEECTTSSEEEEEEECS-SCEEEEEEETTTC--CEEECCCSS--SCEE------EEECTTSSEEEEEEEET---------
T ss_pred eEECCCCCEEEEEECcC-CceEEEEEECCCC--CEEEecCCC--CcCC------eEEcCCCCEEEEEEcCC---------
Confidence 99999999999887432 3468999999885 445554432 2222 88999999999988431
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
....|++||++++..++|...+
T Consensus 376 ---------~~~~l~~~d~~g~~~~~l~~~~ 397 (415)
T 2hqs_A 376 ---------MGSVLNLVSTDGRFKARLPATD 397 (415)
T ss_dssp ---------TEEEEEEEETTSCCEEECCCSS
T ss_pred ---------CccEEEEEECCCCcEEEeeCCC
Confidence 2347999999877777765543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=239.87 Aligned_cols=376 Identities=14% Similarity=0.053 Sum_probs=222.8
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..||++++.+ |+.++|+.. ...+..|+|||||++|||++..+. ..+..+||++++++|+.++|+......
T Consensus 33 ~~l~~~~~~g----g~~~~lt~~--~~~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~~~lt~~~~~~ 102 (1045)
T 1k32_A 33 DDLWEHDLKS----GSTRKIVSN--LGVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEIKRITYFSGKS 102 (1045)
T ss_dssp TEEEEEETTT----CCEEEEECS--SSEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred CcEEEEECCC----CcEEEeeeC--CCcccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCeEEcccCCCcc
Confidence 4799999999 999999843 335899999999999999875311 134579999999999999998665410
Q ss_pred --ccceeeeeEEecCCcEEEEeecCCCCCCC--CCC--CCCCCCceeecccccc----ccchhhhhccCCccchhhhhhh
Q 004475 85 --LNAVFGSFVWVNNSTLLIFTIPSSRRDPP--KKT--MVPLGPKIQSNEQKNI----IISRMTDNLLKDEYDESLFDYY 154 (751)
Q Consensus 85 --~~~~~~~~~wspDg~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 154 (751)
-...+..++|||||+ |+|.+........ ... +...+........... .+...+.. ....+...|..+
T Consensus 103 ~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~--~~~~~~~~~~~~ 179 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG--RNTFELPHWKGY 179 (1045)
T ss_dssp ETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEE--ESCSCCTTSTTC
T ss_pred cccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEe--ccCCCccccccc
Confidence 000026889999999 7776542211000 000 0000000000000000 00000000 000000111111
Q ss_pred ---eeeEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 155 ---TTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 155 ---~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
....||..+..|+.++++.+ ..+..+.|++| +|+|.+.... ...||.++.+++..++++.....
T Consensus 180 ~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg----------~~~l~~~~~~g~~~~~l~~~~~~ 247 (1045)
T 1k32_A 180 RGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG----------FGQIYSTDLDGKDLRKHTSFTDY 247 (1045)
T ss_dssp CSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS----------SCEEEEEETTSCSCEECCCCCSS
T ss_pred cCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccC----------ceEEEEEeCCCCcceEecCCCCc
Confidence 23567776556666677655 67788999988 6666654321 22455555544444444322110
Q ss_pred C-------CC-------------------CCccCC-----------ccCCCceeeee-cCCCceEEEEEeccCCCCcccc
Q 004475 231 E-------DI-------------------PVCYNS-----------VREGMRSISWR-ADKPSTLYWVEAQDRGDANVEV 272 (751)
Q Consensus 231 ~-------~~-------------------~~~~~~-----------~~~~~~~~~~s-pdG~~~i~~~~~~~~~~~~~~~ 272 (751)
. +. ...+.. ....+..++|| |||++ |++..
T Consensus 248 ~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~----------- 315 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS----------- 315 (1045)
T ss_dssp CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-----------
T ss_pred ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCE-EEEEE-----------
Confidence 0 00 000000 11135678888 88888 66643
Q ss_pred CcccceeeccCCCCCCCCceEeEeece-eEE-EEEecCCceEEEeeeecccceeEE-EecCCCCCCcceeeeeccccccc
Q 004475 273 SPRDIIYTQPAEPAEGEKPEILHKLDL-RFS-VSWCDDSLALVNETWYKTSQTRTW-LVCPGSKDVAPRVLFDRVFENVY 349 (751)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~l~~~~~~~~~ 349 (751)
++.|++++++ ++....+..... .+. +.|| ||+.|++.+. ..+|| ++++.++ ..+.++ .....+.
T Consensus 316 --~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~--~~~~l~-~~~~~~~ 382 (1045)
T 1k32_A 316 --RGQAFIQDVS---GTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRTG--KAEKFE-ENLGNVF 382 (1045)
T ss_dssp --TTEEEEECTT---SSBEEECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTTC--CEEECC-CCCCSEE
T ss_pred --cCEEEEEcCC---CCceEEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCCC--CceEec-CCcccee
Confidence 3578888875 444555555555 566 9999 9999999874 46899 9998874 445555 2222222
Q ss_pred CCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCc
Q 004475 350 SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQG 429 (751)
Q Consensus 350 ~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (751)
. ++|||||++|++...+ ..|++||+++|+.+.+..... ....
T Consensus 383 ~------~~~SpDG~~la~~~~~---------------------~~v~~~d~~tg~~~~~~~~~~-----------~~v~ 424 (1045)
T 1k32_A 383 A------MGVDRNGKFAVVANDR---------------------FEIMTVDLETGKPTVIERSRE-----------AMIT 424 (1045)
T ss_dssp E------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECSS-----------SCCC
T ss_pred e------eEECCCCCEEEEECCC---------------------CeEEEEECCCCceEEeccCCC-----------CCcc
Confidence 2 8899999999988722 379999999998877763321 1123
Q ss_pred ceeeccCCCEEEEEEecC------CCCCeEEEEEcCCCceeEeec
Q 004475 430 EEDINLNQLKILTSKESK------TEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 430 ~~~~s~dg~~l~~~~~~~------~~~~~l~~~~~~~g~~~~lt~ 468 (751)
.++|||||++|++..... .....|+++|+.+++..+++.
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~ 469 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 469 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC
Confidence 468999999999887643 335689999999888666654
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=204.05 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=163.5
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+..+.++++. ++..+.++++.|++. .++.|+||++||.+. ........+..|+++||.|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~----~~~~p~vv~~HG~~g---------------~~~~~~~~~~~l~~~G~~v 62 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA----DGPLPIVIVVQEIFG---------------VHEHIRDLCRRLAQEGYLA 62 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC----CSCEEEEEEECCTTC---------------SCHHHHHHHHHHHHTTCEE
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC----CCCCCEEEEEcCcCc---------------cCHHHHHHHHHHHHCCcEE
Confidence 35678888887 788999999999762 245899999999531 1111234566788999999
Q ss_pred EEcCCCCCCCCCCCCCC-ch------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 558 LAGPSIPIIGEGDKLPN-DR------------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~-~~------------~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
++++. +|+|.+... .. ......+|+.++++++.++. +|.++|+++|||+||.+++.++.++|+
T Consensus 63 ~~~d~---~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~ 138 (241)
T 3f67_A 63 IAPEL---YFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ 138 (241)
T ss_dssp EEECT---TTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT
T ss_pred EEecc---cccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC
Confidence 99555 344332111 11 12456899999999999887 788899999999999999999999986
Q ss_pred ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC
Q 004475 625 LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~ 704 (751)
+++++++.+........ +...++...+.++++|+|+++|++|..+| +..+..+++.+.+.+
T Consensus 139 -~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~ 199 (241)
T 3f67_A 139 -LKAAVAWYGKLVGEKSL----------------NSPKHPVDIAVDLNAPVLGLYGAKDASIP--QDTVETMRQALRAAN 199 (241)
T ss_dssp -CCEEEEESCCCSCCCCS----------------SSCCCHHHHGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHHHTT
T ss_pred -cceEEEEeccccCCCcc----------------CCccCHHHhhhhcCCCEEEEEecCCCCCC--HHHHHHHHHHHHHcC
Confidence 77777777653321110 11123444567788999999999999999 999999999999988
Q ss_pred CcEEEEEeCCCCCcCCc-------cccHHHHHHHHHHHHHHH
Q 004475 705 ALSRLVLLPFEHHVYAA-------RENVMHVIWETDRWLQKY 739 (751)
Q Consensus 705 ~~~~~~~~~~~~H~~~~-------~~~~~~~~~~~~~fl~~~ 739 (751)
.+++++++++++|.+.. .+...+.++.+++||+++
T Consensus 200 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 200 ATAEIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp CSEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999853 223456788899998753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-22 Score=209.42 Aligned_cols=309 Identities=9% Similarity=0.002 Sum_probs=202.1
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
...++|+....+++.++||..........+..++|||||++|+|.+...
T Consensus 9 ~~~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~------------------------------- 57 (388)
T 3pe7_A 9 LTFDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD------------------------------- 57 (388)
T ss_dssp CCCEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-------------------------------
T ss_pred ccceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-------------------------------
Confidence 3478888776677789998766432111223489999999999996421
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ce-EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AV-YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~-~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
...+||++++ +|+.++++.. .. ...+.|||||++|+|...+ ..|+++|+
T Consensus 58 ---------------g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-------------~~l~~~d~ 109 (388)
T 3pe7_A 58 ---------------GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-------------RNLMRVDL 109 (388)
T ss_dssp ---------------SSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-------------TEEEEEET
T ss_pred ---------------CCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-------------CeEEEEEC
Confidence 1158999999 6688888876 33 3368899999999998643 36999999
Q ss_pred CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC-CCC---------ccccCcccceeeccCCCC
Q 004475 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR-GDA---------NVEVSPRDIIYTQPAEPA 286 (751)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~-~~~---------~~~~~~~~~l~~~~~~~~ 286 (751)
++++.+.+...+.... ....+.++|||+. ++....... ... .........|++++++
T Consensus 110 ~~g~~~~~~~~~~~~~----------~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-- 176 (388)
T 3pe7_A 110 ATLEENVVYQVPAEWV----------GYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-- 176 (388)
T ss_dssp TTCCEEEEEECCTTEE----------EEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT--
T ss_pred CCCcceeeeechhhcc----------cccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECC--
Confidence 9988777655432100 0012345899998 444332111 000 0011233689999986
Q ss_pred CCCCceEeEeeceeEE-EEEec-CCceEEEeeeec--ccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCC
Q 004475 287 EGEKPEILHKLDLRFS-VSWCD-DSLALVNETWYK--TSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTS 361 (751)
Q Consensus 287 ~~~~~~~l~~~~~~~~-~~~sp-dg~~l~~~~~~~--~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~sp 361 (751)
++..+.++.....+. +.||| ||+.|+|..... ....+||+++++++ ..+.++.... ..+.. ++|||
T Consensus 177 -~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~------~~~sp 247 (388)
T 3pe7_A 177 -TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTH------EFWVP 247 (388)
T ss_dssp -TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEE------EEECT
T ss_pred -CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCccccc------ceECC
Confidence 567778877777777 99999 999999988532 12458999999874 4566654331 11112 78999
Q ss_pred CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEE
Q 004475 362 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 362 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 441 (751)
||+.|+|.+... ......|++||+++|+.+.+..... ............|||||+.|+
T Consensus 248 dg~~l~~~~~~~----------------~~~~~~l~~~d~~~g~~~~l~~~~~------~~~~~~~~~~~~~spdg~~l~ 305 (388)
T 3pe7_A 248 DGSALVYVSYLK----------------GSPDRFIYSADPETLENRQLTSMPA------CSHLMSNYDGSLMVGDGSDAP 305 (388)
T ss_dssp TSSCEEEEEEET----------------TCCCEEEEEECTTTCCEEEEEEECC------EEEEEECTTSSEEEEEECCC-
T ss_pred CCCEEEEEecCC----------------CCCcceEEEEecCCCceEEEEcCCC------ceeeeecCCCCeEccCCCcce
Confidence 999999987431 1112359999999998877765432 111111122357999999999
Q ss_pred EEEec-----CCCCCeEEEEEcCCCceeEeecCCC
Q 004475 442 TSKES-----KTEITQYHILSWPLKKSSQITNFPH 471 (751)
Q Consensus 442 ~~~~~-----~~~~~~l~~~~~~~g~~~~lt~~~~ 471 (751)
+.... ......||++|+.+++.++|+....
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 306 VDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp -----------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred eEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 87542 2446789999999999888887654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=229.01 Aligned_cols=338 Identities=11% Similarity=0.029 Sum_probs=206.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
....++|||||++++. ...+.|+++++++|+.+++....... ...+..++|||||++|+|.+......
T Consensus 18 ~~~~~~~spdg~~~~~-----------~~dg~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-----------EQKGTVRLWNVETNTSTVLIEGKKIE-SLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCBSSSSCBCCC-----------CSSSCEEEBCGGGCCCEEEECTTTTT-TTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred cccccEEcCCCcEEEE-----------eCCCCEEEEECCCCcEEEEecccccc-ccccceEEECCCCCEEEEEecCccce
Confidence 4678999999995533 22348999999999887776543310 01257899999999999986532211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-c---eEEeeeeCCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-A---VYTAVEPSPDQ 186 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~---~~~~~~~SpDG 186 (751)
. ......|+++|+ +|+.++++.. . .+..++|||||
T Consensus 86 ~----------------------------------------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 86 Q----------------------------------------HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp S----------------------------------------SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred e----------------------------------------ecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence 0 001258999999 6677777654 2 26789999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC----CCCccCCc--cCCCceeeeecCCCceEEEE
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED----IPVCYNSV--REGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~----~~~~~~~~--~~~~~~~~~spdG~~~i~~~ 260 (751)
++|+|.+. .+|++|++++++.++++....... .+.+...+ ......++|||||++ |++.
T Consensus 126 ~~la~~~~--------------~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~ 190 (723)
T 1xfd_A 126 QQLIFIFE--------------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR-LAYA 190 (723)
T ss_dssp TCEEEEET--------------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE-EEEE
T ss_pred CEEEEEEC--------------CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE-EEEE
Confidence 99999864 269999999888777765421100 00000000 012357999999999 7776
Q ss_pred EeccCCCCcc----------------------ccCcccceeeccCCCCCCCC-ceEeEee------ceeEE-EEEecCCc
Q 004475 261 EAQDRGDANV----------------------EVSPRDIIYTQPAEPAEGEK-PEILHKL------DLRFS-VSWCDDSL 310 (751)
Q Consensus 261 ~~~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~-~~~l~~~------~~~~~-~~~spdg~ 310 (751)
+..+...... .......|++++++ ++. ...+... ...+. ++|||||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---GPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS---SSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC---CCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 5332111000 00112379999986 333 3455432 34556 99999999
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeeecc-cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
.|++..++......|+++++.++ +.+.+.... ...+.. ....++|||||+.|++.+... ++ .
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~-----------~~--~ 330 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLHR--QNEEPVFSKDGRKFFFIRAIP-----------QG--G 330 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCCC--CCCCCEECTTSCSEEEEEEEC-----------CS--S
T ss_pred EEEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCCEEec--cCCCceEcCCCCeEEEEEecc-----------cC--C
Confidence 88777655445578999999885 334443222 111110 001278999999999873221 11 0
Q ss_pred CCCCceeEEEe-cCCCc---eeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCC-CCCeEEEEEcCCC-ce
Q 004475 390 EGNIPFLDLFD-INTGS---KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWPLK-KS 463 (751)
Q Consensus 390 ~~~~~~l~~~d-~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~~~l~~~~~~~g-~~ 463 (751)
.....+|+++| ..+++ .+.+...... +.. .++|||||+.|+|...... ....||.+++.++ +.
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-----~~~------~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 399 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWD-----VTK------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR 399 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSC-----EEE------EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeE-----EEe------eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCc
Confidence 11244799999 56666 5555432211 111 1479999999998864421 3456888887664 34
Q ss_pred eEee
Q 004475 464 SQIT 467 (751)
Q Consensus 464 ~~lt 467 (751)
++|+
T Consensus 400 ~~l~ 403 (723)
T 1xfd_A 400 QCLS 403 (723)
T ss_dssp BCSS
T ss_pred ceec
Confidence 4454
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=203.91 Aligned_cols=236 Identities=15% Similarity=0.105 Sum_probs=162.8
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+++. .++..+.+.+|.|+.... ...++.|+||++|||||..++. . .....+..|+++||.|+
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~--------~----~~~~~~~~l~~~G~~v~ 69 (277)
T 3bxp_A 3 QVEQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSG--------R----EEAPIATRMMAAGMHTV 69 (277)
T ss_dssp EEEEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCC--------T----THHHHHHHHHHTTCEEE
T ss_pred ceEEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCC--------c----cchHHHHHHHHCCCEEE
Confidence 45677774 567789999999973210 1134589999999987543211 1 11245667888999999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC-------------
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA------------- 622 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~------------- 622 (751)
+++ ++|+|.... ......+|+.++++++.+.. .+|+++|+++||||||.+|+.++.+.
T Consensus 70 ~~d---~~g~g~~~~---~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~ 143 (277)
T 3bxp_A 70 VLN---YQLIVGDQS---VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDH 143 (277)
T ss_dssp EEE---CCCSTTTCC---CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTT
T ss_pred EEe---cccCCCCCc---cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCccc
Confidence 954 445442211 22355788889999998752 36778999999999999999999985
Q ss_pred -CCceeEEEEccCCCCCCCCccCcccccccch-hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 623 -PHLFCCGIARSGSYNKTLTPFGFQTEFRTLW-EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 623 -p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
+.+++++|+.+|..+.... +... .... .....+...++...+.++.+|+|++||++|.++| +.++..+++.+
T Consensus 144 ~~~~~~~~v~~~p~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l 217 (277)
T 3bxp_A 144 YQGQHAAIILGYPVIDLTAG---FPTT-SAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVP--PINSLKYVQAM 217 (277)
T ss_dssp CCCCCSEEEEESCCCBTTSS---SSSS-HHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSC--THHHHHHHHHH
T ss_pred ccCCcCEEEEeCCcccCCCC---CCCc-cccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccC--hHHHHHHHHHH
Confidence 6789999999998763321 1000 0000 0000122345666677788999999999999999 99999999999
Q ss_pred HhCCCcEEEEEeCCCCCcCCccc--------------cHHHHHHHHHHHHHHHh
Q 004475 701 KGHGALSRLVLLPFEHHVYAARE--------------NVMHVIWETDRWLQKYC 740 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~H~~~~~~--------------~~~~~~~~~~~fl~~~l 740 (751)
++.+.+++++++++++|.+.... ...++++.+.+||.++.
T Consensus 218 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 218 LQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHTTCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 99999999999999999765433 24678899999998774
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=212.11 Aligned_cols=231 Identities=19% Similarity=0.180 Sum_probs=172.0
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.++. +|..+.++++.|.+. ++.|+||++||++.. ... .......|+++||+|+
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~-----~~~P~vl~~hG~~~~--------------~~~-~~~~~~~l~~~G~~v~ 183 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP-----GPHPAVIMLGGLEST--------------KEE-SFQMENLVLDRGMATA 183 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS-----CCEEEEEEECCSSCC--------------TTT-THHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC-----CCCCEEEEeCCCCcc--------------HHH-HHHHHHHHHhCCCEEE
Confidence 5688898887 888999999999862 458999999986411 111 1234668889999999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
+++ ++|+|.+........+..+++..++++|.+++.++.++|+|+|||+||++|+.++.+ |++++++|+. |+.+.
T Consensus 184 ~~d---~rG~G~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~ 258 (386)
T 2jbw_A 184 TFD---GPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSD 258 (386)
T ss_dssp EEC---CTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSC
T ss_pred EEC---CCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCCh
Confidence 944 456655422111222344567889999999888888999999999999999999999 7899999999 88764
Q ss_pred CCCccCccc----------ccccchhhH-HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH-HhCCCc
Q 004475 639 TLTPFGFQT----------EFRTLWEAT-NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL-KGHGAL 706 (751)
Q Consensus 639 ~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l-~~~~~~ 706 (751)
......+.. ....++... ..+...++...+.++++|+|+++|++|. +| +.+++++++++ +. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~--~~~~~~l~~~l~~~---~ 332 (386)
T 2jbw_A 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPAE---H 332 (386)
T ss_dssp STTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCGG---G
T ss_pred HHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CC--HHHHHHHHHHhcCC---C
Confidence 322110000 001122222 4456677777888999999999999999 88 89999999888 54 6
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
++++++++++|.+ ......+...+.+||.++++..
T Consensus 333 ~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 333 LNLVVEKDGDHCC--HNLGIRPRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEEEEETTCCGGG--GGGTTHHHHHHHHHHHHHHTSS
T ss_pred cEEEEeCCCCcCC--ccchHHHHHHHHHHHHHhcCCc
Confidence 8999999999976 4456688999999999999754
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=200.51 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=142.0
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+++. .+|.+|++++|+|++ ..+.|+||++||+|.. .........+..|+++||+|+++|
T Consensus 32 ~~~~~~-~dG~~i~g~l~~P~~-----~~~~p~Vl~~HG~g~~-------------~~~~~~~~~a~~la~~Gy~Vl~~D 92 (259)
T 4ao6_A 32 RGFSLE-VDGRTVPGVYWSPAE-----GSSDRLVLLGHGGTTH-------------KKVEYIEQVAKLLVGRGISAMAID 92 (259)
T ss_dssp EEEEEE-ETTEEEEEEEEEESS-----SCCSEEEEEEC---------------------CHHHHHHHHHHHTTEEEEEEC
T ss_pred EEEEEe-eCCeEEEEEEEeCCC-----CCCCCEEEEeCCCccc-------------ccchHHHHHHHHHHHCCCeEEeec
Confidence 345554 689999999999976 3457999999997521 111122345778999999999954
Q ss_pred CCCCCCCCCCCCCc---------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004475 562 SIPIIGEGDKLPND---------------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 562 ~~~~~g~g~~~~~~---------------------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
.+|+|.+.... ......+.|...++++++.. +|+.+|+++|+|+||.+++.+++
T Consensus 93 ---~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~ 167 (259)
T 4ao6_A 93 ---GPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTA 167 (259)
T ss_dssp ---CCC-------------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHH
T ss_pred ---cCCCCCCCCcccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHh
Confidence 45555432110 01223456778888888664 57889999999999999999999
Q ss_pred hCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 621 HAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 621 ~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
..| +++++|+..+...... ..++...+.++++|+|++||++|.+|| +.+++++++++
T Consensus 168 ~~p-ri~Aav~~~~~~~~~~--------------------~~~~~~~a~~i~~P~Li~hG~~D~~vp--~~~~~~l~~al 224 (259)
T 4ao6_A 168 SDK-RIKVALLGLMGVEGVN--------------------GEDLVRLAPQVTCPVRYLLQWDDELVS--LQSGLELFGKL 224 (259)
T ss_dssp HCT-TEEEEEEESCCTTSTT--------------------HHHHHHHGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHC
T ss_pred cCC-ceEEEEEecccccccc--------------------ccchhhhhccCCCCEEEEecCCCCCCC--HHHHHHHHHHh
Confidence 996 4666665544322100 012234567789999999999999999 99999999988
Q ss_pred HhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 701 KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.. .+..++++|+..|.. ...+....+++||+++|+
T Consensus 225 ~~--~~k~l~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 225 GT--KQKTLHVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp CC--SSEEEEEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred CC--CCeEEEEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 53 356899999854433 234677889999999985
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=206.08 Aligned_cols=245 Identities=14% Similarity=0.130 Sum_probs=163.8
Q ss_pred cCCceEEEEEEcCCCceEEEEEEc-CCCCC------------------CCCCCCccEEEEEcCCCCcCcccCCcccCCCC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYL-PPGYD------------------QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN 537 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~-P~~~~------------------~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~ 537 (751)
..+..+.+.+...++ +.+.+|+ |.... ....+++|+||++|||||..++. .
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~--------~ 129 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSA--------S 129 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCT--------T
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCC--------c
Confidence 446788899987777 7888887 86531 11234689999999998643221 1
Q ss_pred ccCCCCchHHHHHHhC-CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeChH
Q 004475 538 EFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG----VADPS-RIAVGGHSYG 611 (751)
Q Consensus 538 ~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~----~id~~-~i~l~G~S~G 611 (751)
. ......+..|+.+ ||+|+.++|+...+. .....++|+.++++|++++. .+|++ +|+|+|+|+|
T Consensus 130 ~--~~~~~~~~~la~~~g~~Vv~~dyR~~p~~--------~~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~G 199 (365)
T 3ebl_A 130 S--TIYDSLCRRFVKLSKGVVVSVNYRRAPEH--------RYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSG 199 (365)
T ss_dssp B--HHHHHHHHHHHHHHTSEEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHH
T ss_pred h--hhHHHHHHHHHHHCCCEEEEeeCCCCCCC--------CCcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCcc
Confidence 1 0012345677775 999999777533221 12456789999999999765 58898 9999999999
Q ss_pred HHHHHHHHHhCCC---ceeEEEEccCCCCCCCCccCcccccccc---hhhHHHH-------------HhcCccc-ccCCC
Q 004475 612 AFMTAHLLAHAPH---LFCCGIARSGSYNKTLTPFGFQTEFRTL---WEATNVY-------------IEMSPIT-HANKI 671 (751)
Q Consensus 612 G~~a~~~a~~~p~---~~~~~v~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~-------------~~~~~~~-~~~~~ 671 (751)
|++|+.++.+.++ .++++|+++|+++..............+ ......+ ...+++. ....+
T Consensus 200 G~la~~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 279 (365)
T 3ebl_A 200 GNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL 279 (365)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh
Confidence 9999999987655 7999999999877432111000000000 0000000 0111221 22334
Q ss_pred C----CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc---cccHHHHHHHHHHHHHHHhcCCC
Q 004475 672 K----KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA---RENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 672 ~----~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
+ +|+||+||+.|.+ ...+.+++++|++.|.+++++++++++|.+.. .+...++++.+.+||+++++...
T Consensus 280 ~~~~~pP~Li~~G~~D~l----~~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~ 355 (365)
T 3ebl_A 280 GGLPFAKSLIIVSGLDLT----CDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYGS 355 (365)
T ss_dssp TTSCCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC---
T ss_pred ccCCCCCEEEEEcCcccc----hhHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhccc
Confidence 4 6899999999976 45568899999999999999999999999863 34566889999999999987644
Q ss_pred C
Q 004475 745 S 745 (751)
Q Consensus 745 ~ 745 (751)
.
T Consensus 356 ~ 356 (365)
T 3ebl_A 356 H 356 (365)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=190.76 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=163.3
Q ss_pred EEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCC
Q 004475 483 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 562 (751)
Q Consensus 483 ~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~ 562 (751)
++.+...++ .+.++++.|.+ .+.|+||++||.|...+. .. ..........|+++||.|++
T Consensus 25 ~~~~~~~~g-~l~~~~~~p~~------~~~p~vv~~HG~~~~~~~--------~~--~~~~~~~~~~l~~~G~~v~~--- 84 (249)
T 2i3d_A 25 EVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFGGT--------MN--NQIVYQLFYLFQKRGFTTLR--- 84 (249)
T ss_dssp EEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGTCC--------TT--SHHHHHHHHHHHHTTCEEEE---
T ss_pred EEEEECCCc-eEEEEEEcCCC------CCCCEEEEECCCcccCCC--------cc--chHHHHHHHHHHHCCCEEEE---
Confidence 888888777 89999998854 236999999996421110 00 00112456688899999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc
Q 004475 563 IPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 563 ~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~ 642 (751)
++++|+|.+...........+|+.++++++.++. .+.++|+++|||+||.+|+.++.++|+ ++++|+++|..+...
T Consensus 85 ~d~~g~G~s~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~-- 160 (249)
T 2i3d_A 85 FNFRSIGRSQGEFDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD-- 160 (249)
T ss_dssp ECCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC--
T ss_pred ECCCCCCCCCCCCCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh--
Confidence 4555666654432222233499999999998875 377799999999999999999999988 999999999755211
Q ss_pred cCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCCc
Q 004475 643 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHVYAA 721 (751)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~ 721 (751)
...+.++++|+|+++|++|..+| ...++++++.+.. .+.+++++++++++|.+.
T Consensus 161 ----------------------~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~- 215 (249)
T 2i3d_A 161 ----------------------FSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN- 215 (249)
T ss_dssp ----------------------CTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT-
T ss_pred ----------------------hhhhcccCCCEEEEEcCCCCCCC--HHHHHHHHHHHhhccCCceeEEEECCCCcccc-
Confidence 12345678999999999999999 9999999999875 455889999999999985
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCC
Q 004475 722 RENVMHVIWETDRWLQKYCLSNTS 745 (751)
Q Consensus 722 ~~~~~~~~~~~~~fl~~~l~~~~~ 745 (751)
.....+.+.+.+||.+++....+
T Consensus 216 -~~~~~~~~~i~~fl~~~l~~~~~ 238 (249)
T 2i3d_A 216 -GKVDELMGECEDYLDRRLNGELV 238 (249)
T ss_dssp -TCHHHHHHHHHHHHHHHHTTCSS
T ss_pred -cCHHHHHHHHHHHHHHhcCCCCC
Confidence 46778999999999999875443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.40 Aligned_cols=248 Identities=14% Similarity=0.079 Sum_probs=180.5
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|+++|+.+ +..+.++.. ...+..++|||||++|||++.. .+...|+++++++|+.++++....
T Consensus 159 ~~i~i~d~~g----~~~~~l~~~--~~~v~~~~~Spdg~~la~~s~~-------~~~~~i~~~d~~tg~~~~l~~~~~-- 223 (415)
T 2hqs_A 159 YELRVSDYDG----YNQFVVHRS--PQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR-- 223 (415)
T ss_dssp EEEEEEETTS----CSCEEEEEE--SSCEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSS--
T ss_pred ceEEEEcCCC----CCCEEEeCC--CCcceeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCcEEEeecCCC--
Confidence 6899999988 888887632 2358899999999999998631 234799999999999888875543
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.+..++|||||+.|+|..... ....||++|+
T Consensus 224 ---~~~~~~~spdg~~la~~~~~~----------------------------------------------g~~~i~~~d~ 254 (415)
T 2hqs_A 224 ---HNGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVMDL 254 (415)
T ss_dssp ---CEEEEEECTTSSEEEEEECTT----------------------------------------------SSCEEEEEET
T ss_pred ---cccCEEEcCCCCEEEEEEecC----------------------------------------------CCceEEEEEC
Confidence 367899999999999874321 1157999999
Q ss_pred -CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 165 -~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+|+.++++.+ ..+..++|||||++|++.+.... ...||++|+++++.++++... .
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~~-------------~ 311 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------S 311 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSS-------------S
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecCC-------------C
Confidence 6788888776 67889999999999999875321 347999999988766553321 1
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
.+..++|||||++ |++.+..+ ....|++++++ ++....++... ... ++|||||+.|++.+... .
T Consensus 312 ~~~~~~~spdG~~-l~~~~~~~---------g~~~i~~~d~~---~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~-~ 376 (415)
T 2hqs_A 312 QNQDADVSSDGKF-MVMVSSNG---------GQQHIAKQDLA---TGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG-M 376 (415)
T ss_dssp EEEEEEECTTSSE-EEEEEECS---------SCEEEEEEETT---TCCEEECCCSS-SCEEEEECTTSSEEEEEEEET-T
T ss_pred cccCeEECCCCCE-EEEEECcC---------CceEEEEEECC---CCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC-C
Confidence 2447899999998 77755221 23589999986 45555565544 555 99999999999988543 3
Q ss_pred ceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC
Q 004475 322 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 363 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG 363 (751)
...||+++++++ ..+.++.... .+.. ++|||--
T Consensus 377 ~~~l~~~d~~g~--~~~~l~~~~~-~v~~------~~~~~~~ 409 (415)
T 2hqs_A 377 GSVLNLVSTDGR--FKARLPATDG-QVKF------PAWSPYL 409 (415)
T ss_dssp EEEEEEEETTSC--CEEECCCSSS-EEEE------EEECCCC
T ss_pred ccEEEEEECCCC--cEEEeeCCCC-CCcC------Ccccccc
Confidence 458999999873 4455554322 2222 7888854
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=191.90 Aligned_cols=261 Identities=12% Similarity=0.041 Sum_probs=184.3
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC-CCeeeccCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESP 81 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~~~~lt~~~ 81 (751)
....|+++|+.+ ++.+.+... ...+..++|||||++|++.. ...|+++++++ ++.+++....
T Consensus 20 ~~~~i~~~d~~~----~~~~~~~~~--~~~v~~~~~spdg~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~ 82 (297)
T 2ojh_A 20 MRSSIEIFNIRT----RKMRVVWQT--PELFEAPNWSPDGKYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGF 82 (297)
T ss_dssp CCEEEEEEETTT----TEEEEEEEE--SSCCEEEEECTTSSEEEEEE-----------TTEEEEEESSSCCSCEECCCTT
T ss_pred cceeEEEEeCCC----CceeeeccC--CcceEeeEECCCCCEEEEEc-----------CCeEEEEeCCCCCCceEecccc
Confidence 346799999988 888877643 33578999999999999953 25899999999 8888886544
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. ..+..++|||||++|++....... ...||.
T Consensus 83 ~~---~~~~~~~~spdg~~l~~~~~~~~~---------------------------------------------~~~l~~ 114 (297)
T 2ojh_A 83 AT---ICNNDHGISPDGALYAISDKVEFG---------------------------------------------KSAIYL 114 (297)
T ss_dssp CC---CBCSCCEECTTSSEEEEEECTTTS---------------------------------------------SCEEEE
T ss_pred cc---ccccceEECCCCCEEEEEEeCCCC---------------------------------------------cceEEE
Confidence 21 135678999999999998532111 158999
Q ss_pred EcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 162 GSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 162 ~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+++ +++.++++....+..++|||||++|++...... ...||.++.++++.+.+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~------------ 172 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGE------------ 172 (297)
T ss_dssp EETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSS------------
T ss_pred EECCCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCC------------
Confidence 998 557777776655778899999999998765421 236777778777666553332
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeec
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~ 319 (751)
..+..+.|+|||+. |++.... .....||.++.+ +.....+......+. +.|+|||+.|++.+...
T Consensus 173 -~~~~~~~~s~dg~~-l~~~~~~---------~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 173 -GRNDGPDYSPDGRW-IYFNSSR---------TGQMQIWRVRVD---GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp -SCEEEEEECTTSSE-EEEEECT---------TSSCEEEEEETT---SSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred -CccccceECCCCCE-EEEEecC---------CCCccEEEECCC---CCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 22457899999998 6665421 123477777764 455666666666666 99999999999887542
Q ss_pred c-------cceeEEEecCCCCCCcceeeeec--ccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 320 T-------SQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 320 ~-------~~~~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
. ....|+++++.++ +.+.+... ....... ++|+|||+.|++.+.+
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~------~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGG--NVETLFDLFGGQGTMNS------PNWSPDGDEFAYVRYF 292 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSC--SCEEEEEEEESTTTSCS------CCBCTTSSEEEEEEEC
T ss_pred CCCcccccCceEEEEEecCCC--CceeeeccCCCCccccc------ceECCCCCEEEEEEec
Confidence 2 2367999999884 33444331 1112222 7799999999998843
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=199.27 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=164.7
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFA 556 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~ 556 (751)
.+..+.++++..+| .+.+.+|.|.+. +.|+||++|||||..++. .. ....+..|+. .||+
T Consensus 60 ~~~~~~~~~~~~~g-~i~~~~~~p~~~------~~p~vv~~HGgg~~~g~~--------~~----~~~~~~~la~~~g~~ 120 (326)
T 3ga7_A 60 SMTTRTCAVPTPYG-DVTTRLYSPQPT------SQATLYYLHGGGFILGNL--------DT----HDRIMRLLARYTGCT 120 (326)
T ss_dssp CCEEEEEEECCTTS-CEEEEEEESSSS------CSCEEEEECCSTTTSCCT--------TT----THHHHHHHHHHHCSE
T ss_pred CcceEEEEeecCCC-CeEEEEEeCCCC------CCcEEEEECCCCcccCCh--------hh----hHHHHHHHHHHcCCE
Confidence 34568999998888 899999999751 249999999998643221 11 1245566776 7999
Q ss_pred EEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc------ee
Q 004475 557 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPHL------FC 627 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~~------~~ 627 (751)
|++++++... +. ......+|+.++++|+.++. .+|+++|+|+|+|+||++|+.++.+.|+. ++
T Consensus 121 V~~~dyr~~p---~~-----~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~ 192 (326)
T 3ga7_A 121 VIGIDYSLSP---QA-----RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVI 192 (326)
T ss_dssp EEEECCCCTT---TS-----CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEE
T ss_pred EEEeeCCCCC---CC-----CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCce
Confidence 9997665322 21 12345689999999999863 57899999999999999999999987664 89
Q ss_pred EEEEccCCCCCCCCccCccccc---ccchhhHHHH---------HhcCcc-----cccCCCCCCEEEEEcCCCCCCCCCh
Q 004475 628 CGIARSGSYNKTLTPFGFQTEF---RTLWEATNVY---------IEMSPI-----THANKIKKPILIIHGEVDDKVGLFP 690 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~-----~~~~~~~~P~li~~G~~D~~vp~~~ 690 (751)
++++++|+.+............ .........+ ...++. ..+.+..+|+||+||+.|+++
T Consensus 193 ~~vl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~---- 268 (326)
T 3ga7_A 193 AILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI---- 268 (326)
T ss_dssp EEEEESCCCSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH----
T ss_pred EEEEeccccccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH----
Confidence 9999999876432210000000 0000001111 011111 123345679999999999984
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc----cHHHHHHHHHHHHHHHhcC
Q 004475 691 MQAERFFDALKGHGALSRLVLLPFEHHVYAARE----NVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 691 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~fl~~~l~~ 742 (751)
.++.+++++|++.|.+++++++++++|++.... ...++++.+.+||.+++..
T Consensus 269 ~~~~~~~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 269 DDSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 577889999999999999999999999985433 3478899999999999864
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=208.68 Aligned_cols=230 Identities=18% Similarity=0.154 Sum_probs=160.3
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
++.+.+. + ..+.++++.|++ .++.|+||++||++.. .....+..|+++||+|+++
T Consensus 135 v~~~~~~--~-~~l~~~l~~P~~-----~~~~P~Vv~~hG~~~~-----------------~~~~~a~~La~~Gy~V~a~ 189 (422)
T 3k2i_A 135 VWRQSVR--A-GRVRATLFLPPG-----PGPFPGIIDIFGIGGG-----------------LLEYRASLLAGHGFATLAL 189 (422)
T ss_dssp CEEEEEE--E-TTEEEEEEECSS-----SCCBCEEEEECCTTCS-----------------CCCHHHHHHHTTTCEEEEE
T ss_pred cEEEEEe--C-CcEEEEEEcCCC-----CCCcCEEEEEcCCCcc-----------------hhHHHHHHHHhCCCEEEEE
Confidence 3444443 2 368999999976 3468999999997421 1124467889999999995
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 561 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
++ +|+|....... ....+|+.+++++|.++..++..+|+|+||||||.+|+.++.++|+ ++++|+++|......
T Consensus 190 D~---rG~g~~~~~~~--~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~ 263 (422)
T 3k2i_A 190 AY---YNFEDLPNNMD--NISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGN 263 (422)
T ss_dssp EC---SSSTTSCSSCS--CEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCS
T ss_pred cc---CCCCCCCCCcc--cCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccC
Confidence 55 45554432211 1226788899999999888888999999999999999999999987 899999888753221
Q ss_pred CccCccccc---------------------ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHH-HHHHH
Q 004475 641 TPFGFQTEF---------------------RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA-ERFFD 698 (751)
Q Consensus 641 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~-~~~~~ 698 (751)
..+.+.... ...+..............+.++++|+|++||++|.++| .... +.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp--~~~~~~~~~~ 341 (422)
T 3k2i_A 264 TAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWR--SELYAQTVSE 341 (422)
T ss_dssp SCEEETTEEECCCCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSC--HHHHHHHHHH
T ss_pred CchhhcCCcCCCcccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHH
Confidence 111100000 00001111111122233467789999999999999998 7755 68889
Q ss_pred HHHhCCCc-EEEEEeCCCCCcCCc---------------------------cccHHHHHHHHHHHHHHHhcCC
Q 004475 699 ALKGHGAL-SRLVLLPFEHHVYAA---------------------------RENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 699 ~l~~~~~~-~~~~~~~~~~H~~~~---------------------------~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
.|++.+.+ ++++++|+++|.+.. .+...+.++.+++||+++++..
T Consensus 342 ~l~~~g~~~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 342 RLQAHGKEKPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp HHHHTTCCCCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhcCCCCCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99998888 999999999999722 1345678899999999999754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=223.08 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=198.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
...++|||||+ +++. .....||++++++|+.++++...... ...+..++|||||++|+|.+.....
T Consensus 18 ~~~~~~s~dg~-~~~~----------~~d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~-- 83 (719)
T 1z68_A 18 TFFPNWISGQE-YLHQ----------SADNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSKL-- 83 (719)
T ss_dssp CCCCEESSSSE-EEEE----------CTTSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEEC--
T ss_pred CCccEECCCCe-EEEE----------cCCCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCcee--
Confidence 35789999995 4443 23468999999999998887543210 0015688999999999998542100
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecCCCceEEeeeeCCCCce
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTPAVYTAVEPSPDQKY 188 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt~~~~~~~~~~SpDG~~ 188 (751)
|.+.....|+++|+ +|+. ++++ ..+..++|||||++
T Consensus 84 --------------------------------------~~~s~~~~i~~~d~~~g~~~~~~~l~--~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 84 --------------------------------------WRYSYTATYYIYDLSNGEFVRGNELP--RPIQYLCWSPVGSK 123 (719)
T ss_dssp --------------------------------------SSSCEEEEEEEEETTTTEECCSSCCC--SSBCCEEECSSTTC
T ss_pred --------------------------------------EEeecceEEEEEECCCCccccceecC--cccccceECCCCCE
Confidence 00002268999999 6666 5554 35678999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC----CCCCccCCc--cCCCceeeeecCCCceEEEEEe
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE----DIPVCYNSV--REGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~~~~--~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|+|... .+|++|++.+++.++++...... +.+.++..+ ......++|||||++ |++.+.
T Consensus 124 la~~~~--------------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~ 188 (719)
T 1z68_A 124 LAYVYQ--------------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEF 188 (719)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEE
T ss_pred EEEEEC--------------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEE
Confidence 999842 26999999988777765332111 000000000 011247899999999 777654
Q ss_pred ccCCCCcc----------------------ccCcccceeeccCCCCCCCCc---eEeE------eeceeEE-EEEecCCc
Q 004475 263 QDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKP---EILH------KLDLRFS-VSWCDDSL 310 (751)
Q Consensus 263 ~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~~---~~l~------~~~~~~~-~~~spdg~ 310 (751)
.+...... .......|++++++ ++.. ..+. .....+. ++|||||+
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS---CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC---CCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 32211100 00122378888885 3322 1221 2344456 99999977
Q ss_pred eEEEeeeecccceeEEEec----CCCCCCcceeeee----cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 311 ALVNETWYKTSQTRTWLVC----PGSKDVAPRVLFD----RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~----~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
.++...++......||+++ +.++ +.+.++. .....+... ....++|||||+.|++.....
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~--------- 333 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTGWAGGF-FVSTPVFSYDAISYYKIFSDK--------- 333 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSSCSSSS-SCCCCEECTTSSCEEEEEECT---------
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCceEccc-cCCccEECCCCCeEEEEEEcc---------
Confidence 5544333334446899999 7764 3344442 221111100 001277999999988865221
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec--C-CCCCeEEEEEcC
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES--K-TEITQYHILSWP 459 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~-~~~~~l~~~~~~ 459 (751)
....+|+++|+.+++.+.++..... +.. +.++ |++.|+|.... . .....||.++++
T Consensus 334 --------~g~~~l~~~~~~~~~~~~lt~~~~~-----v~~-------~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 334 --------DGYKHIHYIKDTVENAIQITSGKWE-----AIN-------IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp --------TSCEEEEEESSCSTTCEECSCSSSC-----EEE-------EEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred --------CCceEEEEEECCCCceEecccCceE-----EEE-------EEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 1234799999988887766543321 221 2455 89999998754 1 234579999987
Q ss_pred CC--ceeEee
Q 004475 460 LK--KSSQIT 467 (751)
Q Consensus 460 ~g--~~~~lt 467 (751)
++ +.+.|+
T Consensus 393 ~g~~~~~~l~ 402 (719)
T 1z68_A 393 SYPPSKKCVT 402 (719)
T ss_dssp SSSCCEEESS
T ss_pred CCCCCceecc
Confidence 66 345555
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=209.11 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=154.8
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~ 572 (751)
.+.+++|.|++ .++.|+||++||++.. .....+..|+++||+|++++++ |++...
T Consensus 160 ~l~~~l~~P~~-----~~~~P~Vv~lhG~~~~-----------------~~~~~a~~La~~Gy~Vla~D~r---G~~~~~ 214 (446)
T 3hlk_A 160 RVRGTLFLPPE-----PGPFPGIVDMFGTGGG-----------------LLEYRASLLAGKGFAVMALAYY---NYEDLP 214 (446)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCSSCS-----------------CCCHHHHHHHTTTCEEEEECCS---SSTTSC
T ss_pred eEEEEEEeCCC-----CCCCCEEEEECCCCcc-----------------hhhHHHHHHHhCCCEEEEeccC---CCCCCC
Confidence 69999999975 3468999999997421 1123467889999999995554 554433
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccc----
Q 004475 573 PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE---- 648 (751)
Q Consensus 573 ~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~---- 648 (751)
..... ...+|+.++++++.++..+|.++|+|+||||||.+|+.++.++|+ ++++|+++|........+.+...
T Consensus 215 ~~~~~--~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 291 (446)
T 3hlk_A 215 KTMET--LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPP 291 (446)
T ss_dssp SCCSE--EEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECC
T ss_pred cchhh--CCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCc
Confidence 22111 126788899999999988899999999999999999999999987 89999998865322111100000
Q ss_pred -----------------cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHH-HHHHHHHHHhCCCc-EEE
Q 004475 649 -----------------FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGHGAL-SRL 709 (751)
Q Consensus 649 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~-~~~~~~~l~~~~~~-~~~ 709 (751)
....+..............+.++++|+|++||++|.++| ... +..+.+.|++.+.+ +++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~~~~~~l~~~g~~~~~l 369 (446)
T 3hlk_A 292 VGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWK--SEFYANEACKRLQAHGRRKPQI 369 (446)
T ss_dssp CCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHHTTCCCCEE
T ss_pred cccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcC--hHHHHHHHHHHHHHcCCCCcEE
Confidence 000000000001111222366788999999999999998 744 47899999998888 899
Q ss_pred EEeCCCCCcCC---------------------------ccccHHHHHHHHHHHHHHHhcCC
Q 004475 710 VLLPFEHHVYA---------------------------ARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 710 ~~~~~~~H~~~---------------------------~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
++||+++|.+. ......+.++.+++||+++|+..
T Consensus 370 ~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 370 ICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp EEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999983 11225678899999999999753
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=203.77 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=164.0
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
..+..+.+.+...+|..+.++++.|.+ .++.|+||++||+|... ..+ .....++++||+
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~-----~~~~p~vv~~HG~g~~~-----------~~~-----~~~~~~~~~G~~ 136 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNS-----------GDW-----NDKLNYVAAGFT 136 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC-----SSCEEEEEEECCTTCCS-----------CCS-----GGGHHHHTTTCE
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC-----CCCcCEEEEECCCCCCC-----------CCh-----hhhhHHHhCCcE
Confidence 446788999999899999999999976 34589999999986321 111 122366899999
Q ss_pred EEEcCCCCCCCCCCCCC----------------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 004475 557 VLAGPSIPIIGEGDKLP----------------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 614 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~----------------------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~ 614 (751)
|+++++ +|+|.+.. ...+....++|+.++++++..+..+|.++|+++|||+||.+
T Consensus 137 v~~~D~---rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~l 213 (346)
T 3fcy_A 137 VVAMDV---RGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGL 213 (346)
T ss_dssp EEEECC---TTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHH
T ss_pred EEEEcC---CCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHH
Confidence 999555 45544321 12235567899999999999988888899999999999999
Q ss_pred HHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccch------------------hhHHHHHhcCcccccCCCCCCEE
Q 004475 615 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW------------------EATNVYIEMSPITHANKIKKPIL 676 (751)
Q Consensus 615 a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~P~l 676 (751)
|+.++.++|+ ++++|+.+|........+.... ....+ .....+...++...+.++++|+|
T Consensus 214 a~~~a~~~p~-v~~~vl~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~l 291 (346)
T 3fcy_A 214 SLACAALEPR-VRKVVSEYPFLSDYKRVWDLDL-AKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVL 291 (346)
T ss_dssp HHHHHHHSTT-CCEEEEESCSSCCHHHHHHTTC-CCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEE
T ss_pred HHHHHHhCcc-ccEEEECCCcccCHHHHhhccc-cccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEE
Confidence 9999999987 9999999987542110000000 00000 01112223344556788899999
Q ss_pred EEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 677 IIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 677 i~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+++|+.|.++| +..+.++++++.. +++++++|+++|.+. .++.+.+.+||.+
T Consensus 292 ii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 292 MCVGLMDQVCP--PSTVFAAYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp EEEETTCSSSC--HHHHHHHHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred EEeeCCCCcCC--HHHHHHHHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 99999999998 8888777766543 789999999999986 3567888999975
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=198.46 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=168.4
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+..+.+.++. ++..+.++++.|. +.|+||++||++. . ......+...|+++||.|+
T Consensus 4 ~~~~~~~~~~-~g~~l~~~~~~p~--------~~p~vv~~HG~~~-----------~----~~~~~~~~~~l~~~g~~v~ 59 (290)
T 3ksr_A 4 AKLSSIEIPV-GQDELSGTLLTPT--------GMPGVLFVHGWGG-----------S----QHHSLVRAREAVGLGCICM 59 (290)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEE--------SEEEEEEECCTTC-----------C----TTTTHHHHHHHHTTTCEEE
T ss_pred CceeeEEecC-CCeEEEEEEecCC--------CCcEEEEeCCCCC-----------C----cCcHHHHHHHHHHCCCEEE
Confidence 3467778875 7789999999986 2799999999741 1 1112345668888999999
Q ss_pred EcCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 559 AGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+ ++++|+|.+... ........+|+.++++++.++..+|.++|+++||||||.+++.++.++| ++++++.+|..
T Consensus 60 ~---~d~~G~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~ 134 (290)
T 3ksr_A 60 T---FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPAL 134 (290)
T ss_dssp C---CCCTTSGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCC
T ss_pred E---eecCCCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcch
Confidence 9 555566655332 2245677899999999999887788889999999999999999999987 77888888765
Q ss_pred CCCCCccCcccccccchhhHHHH-------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEE
Q 004475 637 NKTLTPFGFQTEFRTLWEATNVY-------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 709 (751)
Q Consensus 637 d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~ 709 (751)
.... .+...............+ ........+.++++|+|++||+.|..+| ...+..+++.++..+ ++++
T Consensus 135 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~~~~-~~~~ 210 (290)
T 3ksr_A 135 YKDA-HWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP--HPVMRNYADAFTNAR-SLTS 210 (290)
T ss_dssp CCSS-CTTSBHHHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSC--HHHHHHHHHHTTTSS-EEEE
T ss_pred hhhh-hhhcccccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccC--hHHHHHHHHHhccCC-CceE
Confidence 4221 111111000000001111 1112233456688999999999999999 999999999987765 7899
Q ss_pred EEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 710 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 710 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+++++++|.+........+.+.+.+||.+++..
T Consensus 211 ~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 211 RVIAGADHALSVKEHQQEYTRALIDWLTEMVVG 243 (290)
T ss_dssp EEETTCCTTCCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence 999999999875556778899999999998864
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=188.37 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=158.1
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
+++. .+|..+.++++.|++. .++.|+||++||.+.. ........+...|+++||.|++ +
T Consensus 4 ~~~~-~~g~~l~~~~~~p~~~----~~~~p~vvl~HG~~~~-------------~~~~~~~~~~~~l~~~g~~vi~---~ 62 (251)
T 2wtm_A 4 MYID-CDGIKLNAYLDMPKNN----PEKCPLCIIIHGFTGH-------------SEERHIVAVQETLNEIGVATLR---A 62 (251)
T ss_dssp EEEE-ETTEEEEEEEECCTTC----CSSEEEEEEECCTTCC-------------TTSHHHHHHHHHHHHTTCEEEE---E
T ss_pred eEEe-cCCcEEEEEEEccCCC----CCCCCEEEEEcCCCcc-------------cccccHHHHHHHHHHCCCEEEE---e
Confidence 4454 4788999999998641 1247999999996411 0001112345577889999999 6
Q ss_pred CCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-
Q 004475 564 PIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL- 640 (751)
Q Consensus 564 ~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~- 640 (751)
+.+|+|.+.... .......+|+.++++++.+...+ ++++++||||||.+|+.+|.++|++++++|+.+|......
T Consensus 63 D~~G~G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (251)
T 2wtm_A 63 DMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140 (251)
T ss_dssp CCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHH
Confidence 667888765432 23456788999999999765433 4899999999999999999999999999999998643100
Q ss_pred -----------CccCcccccccchh-------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 641 -----------TPFGFQTEFRTLWE-------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 641 -----------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
.......... .+. .............+.++++|+|++||++|..+| +..++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~--~~~~~~~~~~~-- 215 (251)
T 2wtm_A 141 ARTGELLGLKFDPENIPDELD-AWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVP--YEASVAFSKQY-- 215 (251)
T ss_dssp HHHTEETTEECBTTBCCSEEE-ETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSC--HHHHHHHHHHS--
T ss_pred HhhhhhccccCCchhcchHHh-hhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcC--hHHHHHHHHhC--
Confidence 0000000000 000 001111223334456789999999999999999 88888887665
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+++++++++++|.+ .+....+.+.+.+||++++.
T Consensus 216 --~~~~~~~~~~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 216 --KNCKLVTIPGDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp --SSEEEEEETTCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred --CCcEEEEECCCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 357999999999998 67788899999999998875
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=201.00 Aligned_cols=239 Identities=17% Similarity=0.099 Sum_probs=164.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCC-CCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYD-QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~-~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
.....+.+.+...++..+...+| |+... ....++.|+||++||+||..++. .. ....+..|+++||
T Consensus 15 ~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~--------~~----~~~~~~~l~~~G~ 81 (283)
T 3bjr_A 15 LYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPV--------AQ----AESLAMAFAGHGY 81 (283)
T ss_dssp --CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCH--------HH----HHHHHHHHHTTTC
T ss_pred cCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCc--------cc----cHHHHHHHHhCCc
Confidence 33556778888888888888888 65421 00124589999999987532210 11 1234567788999
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCCc-------
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPHL------- 625 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~~------- 625 (751)
.|+++++ +|.+.+. . ......+|+..+++++.+.. .+|+++|+++||||||.+|+.++.++|++
T Consensus 82 ~v~~~d~---~g~~~~~--~-~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 155 (283)
T 3bjr_A 82 QAFYLEY---TLLTDQQ--P-LGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNV 155 (283)
T ss_dssp EEEEEEC---CCTTTCS--S-CBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred EEEEEec---cCCCccc--c-CchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCC
Confidence 9999554 4554431 0 11345678889999998753 36778999999999999999999999877
Q ss_pred ------eeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 626 ------FCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 626 ------~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
++++|+.+|..+.... +.............+...++...+.++++|+|++||++|.++| +.++..+++.
T Consensus 156 ~~~~~~~~~~v~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p--~~~~~~~~~~ 230 (283)
T 3bjr_A 156 TPAMLKPNNVVLGYPVISPLLG---FPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVP--ATNTLAYATA 230 (283)
T ss_dssp CHHHHCCSSEEEESCCCCTTSB---C--------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSC--THHHHHHHHH
T ss_pred CcCCCCccEEEEcCCccccccc---cccccchHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCC--hHHHHHHHHH
Confidence 8999999998763211 0000000000000123345566677889999999999999999 8999999999
Q ss_pred HHhCCCcEEEEEeCCCCCcCCccc------------cHHHHHHHHHHHHHHH
Q 004475 700 LKGHGALSRLVLLPFEHHVYAARE------------NVMHVIWETDRWLQKY 739 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~~------------~~~~~~~~~~~fl~~~ 739 (751)
+...+.+++++++++++|.+.... ...++++.+.+||+++
T Consensus 231 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 231 LATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHTTCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHCCCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999999999775332 1256788899999764
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=199.37 Aligned_cols=221 Identities=17% Similarity=0.082 Sum_probs=153.9
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~ 571 (751)
.+.+++|.|.+ .++.|+||++|||||..++. ..+ ...+..++. .||+|++++++ +.++.
T Consensus 66 ~i~~~~~~p~~-----~~~~p~vv~~HGGg~~~g~~--------~~~----~~~~~~la~~~g~~vv~~dyr---~~p~~ 125 (322)
T 3fak_A 66 GCAAEWVRAPG-----CQAGKAILYLHGGGYVMGSI--------NTH----RSMVGEISRASQAAALLLDYR---LAPEH 125 (322)
T ss_dssp TEEEEEEECTT-----CCTTCEEEEECCSTTTSCCH--------HHH----HHHHHHHHHHHTSEEEEECCC---CTTTS
T ss_pred CeEEEEEeCCC-----CCCccEEEEEcCCccccCCh--------HHH----HHHHHHHHHhcCCEEEEEeCC---CCCCC
Confidence 48999999975 23589999999998643221 111 133455565 69999996665 32221
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEccCCCCCCCCccCccc
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSYNKTLTPFGFQT 647 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~d~~~~~~~~~~ 647 (751)
.....++|+.++++|+.++ .+|++||+|+|+|+||++|+.++.+.++. ++++|+++|..+.......+..
T Consensus 126 -----~~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 199 (322)
T 3fak_A 126 -----PFPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKT 199 (322)
T ss_dssp -----CTTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHH
Confidence 1234578999999999988 67899999999999999999999887654 8999999998875432111100
Q ss_pred ccc-cch------h-hHHHHH--------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 648 EFR-TLW------E-ATNVYI--------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 648 ~~~-~~~------~-~~~~~~--------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
... .++ . ....|. ..+|+...-...+|+||+||+.|.+ ..++..++++|++.|.++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~----~~~~~~~~~~l~~~g~~~~~~~ 275 (322)
T 3fak_A 200 RAEADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL----LDDSIKLDAKAKADGVKSTLEI 275 (322)
T ss_dssp TTTTCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCccCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc----HHHHHHHHHHHHHcCCCEEEEE
Confidence 000 000 0 001111 1223322112236999999999987 4678899999999999999999
Q ss_pred eCCCCCcCCc----cccHHHHHHHHHHHHHHHhcCC
Q 004475 712 LPFEHHVYAA----RENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 712 ~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+|+++|.+.. .+...++++.+.+||.+++...
T Consensus 276 ~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3fak_A 276 WDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAAL 311 (322)
T ss_dssp ETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred eCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998754 2335788999999999998753
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=182.45 Aligned_cols=203 Identities=16% Similarity=0.149 Sum_probs=150.0
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..+.+.+...+| .+.++++.|.+ .++.|+||++||+|+..+.. . ......+...|+++||.|++
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~~--------~--~~~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-----IEKSVTGIICHPHPLHGGTM--------N--NKVVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-----CCCSEEEEEECSCGGGTCCT--------T--CHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-----CCCCCEEEEEcCCCCCCCcc--------C--CchHHHHHHHHHHCCCEEEE
Confidence 456788888888 99999999875 23479999999964221110 0 00112456678889999999
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~ 639 (751)
.+.+|+|.+...........+|+.++++++.++ .+.++|+++|||+||.+|+.++ .+| +++++|+++|..+..
T Consensus 69 ---~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~ 141 (208)
T 3trd_A 69 ---FNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE 141 (208)
T ss_dssp ---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG
T ss_pred ---EecCCCCCCCCCccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC
Confidence 555677766544233355688999999999887 3458999999999999999999 666 899999999875210
Q ss_pred CCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 640 LTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
....+..+++|+|+++|++|..+| +..++++++.+.. .++++++++++|.+
T Consensus 142 ------------------------~~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~H~~ 192 (208)
T 3trd_A 142 ------------------------GFASLTQMASPWLIVQGDQDEVVP--FEQVKAFVNQISS---PVEFVVMSGASHFF 192 (208)
T ss_dssp ------------------------GGTTCCSCCSCEEEEEETTCSSSC--HHHHHHHHHHSSS---CCEEEEETTCCSSC
T ss_pred ------------------------CchhhhhcCCCEEEEECCCCCCCC--HHHHHHHHHHccC---ceEEEEeCCCCCcc
Confidence 012244568999999999999999 8888888776643 37999999999998
Q ss_pred CccccHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWL 736 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl 736 (751)
.. ...++.+.+.+||
T Consensus 193 ~~--~~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HG--RLIELRELLVRNL 207 (208)
T ss_dssp TT--CHHHHHHHHHHHH
T ss_pred cc--cHHHHHHHHHHHh
Confidence 63 2366777777776
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=186.96 Aligned_cols=208 Identities=18% Similarity=0.192 Sum_probs=158.6
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+..+.+.++. ++.++.++++.|.+ +.|+||++||.+... ..+ ........|+++||.|+
T Consensus 10 ~~~~~~~~~~-~g~~l~~~~~~p~~-------~~p~vv~~hG~~~~~-----------~~~--~~~~~~~~l~~~G~~v~ 68 (223)
T 2o2g_A 10 PQEYAVSVSV-GEVKLKGNLVIPNG-------ATGIVLFAHGSGSSR-----------YSP--RNRYVAEVLQQAGLATL 68 (223)
T ss_dssp CCEEEEEEEE-TTEEEEEEEECCTT-------CCEEEEEECCTTCCT-----------TCH--HHHHHHHHHHHHTCEEE
T ss_pred ceeeEEEEec-CCeEEEEEEecCCC-------CceEEEEecCCCCCC-----------Ccc--chHHHHHHHHHCCCEEE
Confidence 5678888885 88899999999875 379999999974211 111 01235567788999999
Q ss_pred EcCCCCCCCCCCCCCC------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 559 AGPSIPIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
+++ .+|+|.+... ........+|+.++++++..+..+|..+++++|||+||.+++.++..+|++++++|+.
T Consensus 69 ~~d---~~g~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~ 145 (223)
T 2o2g_A 69 LID---LLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSR 145 (223)
T ss_dssp EEC---SSCHHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred EEc---CCCcCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEe
Confidence 944 4555543211 1234566889999999999988889999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEe
Q 004475 633 SGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712 (751)
Q Consensus 633 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~ 712 (751)
+|..+.. ...+.++++|+|+++|++|..+| ... .+.+.+.+.+++++++
T Consensus 146 ~~~~~~~-------------------------~~~~~~~~~P~l~i~g~~D~~~~--~~~----~~~~~~~~~~~~~~~~ 194 (223)
T 2o2g_A 146 GGRPDLA-------------------------PSALPHVKAPTLLIVGGYDLPVI--AMN----EDALEQLQTSKRLVII 194 (223)
T ss_dssp SCCGGGC-------------------------TTTGGGCCSCEEEEEETTCHHHH--HHH----HHHHHHCCSSEEEEEE
T ss_pred CCCCCcC-------------------------HHHHhcCCCCEEEEEccccCCCC--HHH----HHHHHhhCCCeEEEEe
Confidence 9864321 02345678999999999999875 333 3445555678999999
Q ss_pred CCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 713 PFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 713 ~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++++|.+...+....+.+.+.+||.++++
T Consensus 195 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 195 PRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 99999976556678899999999998873
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=191.72 Aligned_cols=207 Identities=15% Similarity=0.106 Sum_probs=156.6
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.++++..+|..+.++++.|.+ ++.|+||++||.+. ... ........|+++||.|++
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~------~~~p~vv~~hG~~~-----------~~~----~~~~~~~~l~~~g~~v~~-- 60 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQDIFG-----------VNA----FMRETVSWLVDQGYAAVC-- 60 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS------CSEEEEEEECCTTB-----------SCH----HHHHHHHHHHHTTCEEEE--
T ss_pred ceEEEecCCCCeEEEEEECCCC------CCCCEEEEEcCCCC-----------CCH----HHHHHHHHHHhCCcEEEe--
Confidence 3456777788899999999874 24799999999631 111 112456678889999999
Q ss_pred CCCCCCCCCCCCC-----------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 562 SIPIIGEGDKLPN-----------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 562 ~~~~~g~g~~~~~-----------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.+.+|+|.+... ........+|+.++++++.++..++ .+|+++|||+||.+|+.++.++|
T Consensus 61 -~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~- 137 (236)
T 1zi8_A 61 -PDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY- 137 (236)
T ss_dssp -ECGGGGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC-
T ss_pred -ccccccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC-
Confidence 445555544221 1123455789999999998876545 69999999999999999999997
Q ss_pred ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC
Q 004475 625 LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704 (751)
Q Consensus 625 ~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~ 704 (751)
++++++++|.... +....+.++++|+|+++|++|..+| ...++.+++.+...+
T Consensus 138 -~~~~v~~~~~~~~------------------------~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~ 190 (236)
T 1zi8_A 138 -VDRAVGYYGVGLE------------------------KQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFGANP 190 (236)
T ss_dssp -SSEEEEESCSSGG------------------------GCGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHTTCT
T ss_pred -ccEEEEecCcccc------------------------cchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHHHhCC
Confidence 8899988874211 1223456678999999999999999 999999999987655
Q ss_pred CcEEEEEeCCCCCcCCccc-------cHHHHHHHHHHHHHHHhcC
Q 004475 705 ALSRLVLLPFEHHVYAARE-------NVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 705 ~~~~~~~~~~~~H~~~~~~-------~~~~~~~~~~~fl~~~l~~ 742 (751)
+++++++++++|.+.... ...+..+.+.+||.++++.
T Consensus 191 -~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 191 -LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp -TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred -CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999876432 2357889999999998864
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=197.77 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=163.4
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
..+..+.+++++.+|..+.++++.|.+ .++.|+||++||++... .. .......++++||.
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~-----~~~~p~vv~~HG~~~~~----------~~-----~~~~~~~l~~~g~~ 111 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY----------DG-----EIHEMVNWALHGYA 111 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS----------GG-----GHHHHHHHHHTTCE
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCC-----CCCccEEEEEcCCCCCC----------CC-----CcccccchhhCCcE
Confidence 345678889988888899999999976 33589999999975210 01 11233477889999
Q ss_pred EEEcCCCCCCCCCCCCCC--------------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004475 557 VLAGPSIPIIGEGDKLPN--------------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 616 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~--------------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~ 616 (751)
|+++++ +|+|.+... ..+.....+|+.++++++.++..+|+++|+++|||+||.+|+
T Consensus 112 v~~~d~---rg~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 188 (318)
T 1l7a_A 112 TFGMLV---RGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTI 188 (318)
T ss_dssp EEEECC---TTTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHH
T ss_pred EEEecC---CCCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHH
Confidence 999555 455544322 112457789999999999998878889999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCcccccccchh--------------hH---HHHHhcCcccccCCCCCCEEEEE
Q 004475 617 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE--------------AT---NVYIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 617 ~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~~~~~P~li~~ 679 (751)
.++..+|+ ++++|+.+|........... .....|. .. ......++...+.++++|+|+++
T Consensus 189 ~~a~~~~~-~~~~v~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 265 (318)
T 1l7a_A 189 AAAALSDI-PKAAVADYPYLSNFERAIDV--ALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSI 265 (318)
T ss_dssp HHHHHCSC-CSEEEEESCCSCCHHHHHHH--CCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEE
T ss_pred HHhccCCC-ccEEEecCCcccCHHHHHhc--CCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEe
Confidence 99999975 77778777754311000000 0000010 01 11222345556778899999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
|+.|.++| +..+.++++.+.. +++++++++++|... .+..+.+.+||.++++
T Consensus 266 g~~D~~~~--~~~~~~~~~~l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 266 GLIDKVTP--PSTVFAAYNHLET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp ETTCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred ccCCCCCC--cccHHHHHhhcCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 99999998 8888888877643 489999999999842 3678899999999885
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=201.10 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=163.2
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+.+... +|..+.+++|.|+++.+.+ ++|+||++||+|+.......+.... ..... ..........|+.|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~--~~Pvvv~lHG~g~~~~~~~~~~~~~-~g~~~--~~~~~~~~~~~~~vv 217 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDR--KYPLVVFLHGAGERGTDNYLQVAGN-RGAVV--WAQPRYQVVHPCFVL 217 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTS--CEEEEEEECCGGGCSSSSSHHHHSS-TTTTG--GGSHHHHTTSCCEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCC--CccEEEEECCCCCCCCchhhhhhcc-cccee--ecCccccccCCEEEE
Confidence 4577888887 8889999999998865433 5899999999875432211111110 00111 112234457889999
Q ss_pred EcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++.++..+++..... ........+|+.++++++.++..+|++||+|+||||||++|+.++.++|++++++++++|.
T Consensus 218 ~pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~ 297 (380)
T 3doh_A 218 APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGG 297 (380)
T ss_dssp EECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred EecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCC
Confidence 9777654444432211 1111345788889999998887789999999999999999999999999999999999997
Q ss_pred CCCCCCccCcccccccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 004475 636 YNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714 (751)
Q Consensus 636 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 714 (751)
.+. ..+.+++ +|+|++||+.|..+| +.++++++++|.+.+.+++++++|+
T Consensus 298 ~~~---------------------------~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~~ 348 (380)
T 3doh_A 298 GDV---------------------------SKVERIKDIPIWVFHAEDDPVVP--VENSRVLVKKLAEIGGKVRYTEYEK 348 (380)
T ss_dssp CCG---------------------------GGGGGGTTSCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCh---------------------------hhhhhccCCCEEEEecCCCCccC--HHHHHHHHHHHHHCCCceEEEEecC
Confidence 421 1122333 899999999999999 9999999999999999999999999
Q ss_pred C---CCcCCccccHHHHHH--HHHHHHHHH
Q 004475 715 E---HHVYAARENVMHVIW--ETDRWLQKY 739 (751)
Q Consensus 715 ~---~H~~~~~~~~~~~~~--~~~~fl~~~ 739 (751)
+ +|++.....+...+. .+++||.++
T Consensus 349 ~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 349 GFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp THHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 9 444433334445555 889999865
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=199.71 Aligned_cols=232 Identities=16% Similarity=0.196 Sum_probs=167.4
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
...+..+.+.+++.+|..+.++++.|.+. .++.|+||++||+|... .+ ......++++||
T Consensus 63 ~~~~~~~~~~~~~~dg~~i~~~~~~P~~~----~~~~p~vv~~HG~g~~~------------~~----~~~~~~l~~~G~ 122 (337)
T 1vlq_A 63 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGR------------GF----PHDWLFWPSMGY 122 (337)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCC------------CC----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEecCCC----CCCccEEEEEcCCCCCC------------CC----chhhcchhhCCC
Confidence 34467899999988899999999999763 23589999999976321 01 122346688999
Q ss_pred EEEEcCCCCCCCCCCCC-----CC----------------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Q 004475 556 AVLAGPSIPIIGEGDKL-----PN----------------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGH 608 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~-----~~----------------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~ 608 (751)
+|++++++ |+|.+. .. ..+....++|+.++++++.++..+|+++|+++||
T Consensus 123 ~v~~~d~r---G~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~ 199 (337)
T 1vlq_A 123 ICFVMDTR---GQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGG 199 (337)
T ss_dssp EEEEECCT---TCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EEEEecCC---CCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence 99995554 444221 11 1123477899999999999988888899999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchh---------------hHHHHHhcCcccccCCCCC
Q 004475 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE---------------ATNVYIEMSPITHANKIKK 673 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 673 (751)
|+||.+|+.++.+.| +++++|+.+|........... .....+. ....+...++...+.++++
T Consensus 200 S~GG~la~~~a~~~p-~v~~~vl~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 276 (337)
T 1vlq_A 200 SQGGGIALAVSALSK-KAKALLCDVPFLCHFRRAVQL--VDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKI 276 (337)
T ss_dssp THHHHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHH--CCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCS
T ss_pred CHHHHHHHHHHhcCC-CccEEEECCCcccCHHHHHhc--CCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCC
Confidence 999999999999997 589999888864421000000 0000000 0112234456667788999
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
|+|+++|+.|.++| +..+.++++++.. +++++++++++|.+. .....+.+.+||.+++..
T Consensus 277 P~lii~G~~D~~~p--~~~~~~~~~~l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~~ 336 (337)
T 1vlq_A 277 PALFSVGLMDNICP--PSTVFAAYNYYAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFEK 336 (337)
T ss_dssp CEEEEEETTCSSSC--HHHHHHHHHHCCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeeCCCCCCC--chhHHHHHHhcCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHhc
Confidence 99999999999998 8998888877753 589999999999963 235678899999998863
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=189.61 Aligned_cols=307 Identities=14% Similarity=0.121 Sum_probs=193.4
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
..+..|++ ||++|||+....... ......+||++++++++.++| . .+..++|||||++|+|.+.....
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~l---~------~~~~~~~SpDg~~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNARRFI---E------NATMPRISPDGKKIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCEEEE---E------SCEEEEECTTSSEEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCceEEc---c------cCCCeEECCCCCEEEEEEeccCC
Confidence 35678999 999999987532111 113468999999999998888 1 25678999999999998542110
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCCceEEeeeeCCCCceE
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i 189 (751)
...+||++++ +|+.++++....+..++|||||++|
T Consensus 83 --------------------------------------------~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l 118 (347)
T 2gop_A 83 --------------------------------------------KVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKL 118 (347)
T ss_dssp --------------------------------------------TEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEE
T ss_pred --------------------------------------------CcceEEEEECCCCceEEEEcCCCccceeECCCCCEE
Confidence 1258999999 5677777765338899999999999
Q ss_pred EEEEecCCc--ccc-c---c---cC-----CCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 190 LITSMHRPY--SYK-V---P---CA-----RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 190 ~~~~~~~~~--~~~-~---~---~~-----~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
+|.+...+. .+. . + .+ .....|+++++++++. ++++. + .+..+.|||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--------------~~~~~~~spdg- 182 (347)
T 2gop_A 119 LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--------------RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--------------TTCEEEEETTE-
T ss_pred EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--------------CcccccCCCCe-
Confidence 998754210 000 0 0 00 1136799999998877 66643 2 23478999999
Q ss_pred ceEEEEEeccCCCCccccCc-ccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecc----cceeEEEec
Q 004475 255 STLYWVEAQDRGDANVEVSP-RDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKT----SQTRTWLVC 329 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~l~~~~ 329 (751)
. ++... .+.... ... ...||+++ . + ..+.++.. ..+. .+||||++|+|.+.... ...+||+++
T Consensus 183 ~-~~~~~-~~~~~~---~~~~~~~l~~~d-~---~-~~~~l~~~-~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 183 I-VVNVP-HREIIP---QYFKFWDIYIWE-D---G-KEEKMFEK-VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp E-EEEEE-CCCSSC---CSSCCEEEEEEE-T---T-EEEEEEEE-ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred E-EEEEe-cccccc---cccccccEEEeC-C---C-ceEEeccC-ccee-eECCCCCEEEEEEccccCCccccceEEEEC
Confidence 3 44432 211100 001 34788887 3 3 45556554 3333 44999999999874431 246899999
Q ss_pred CCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 330 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
+ ++.+.++......+. ..+.|+ || +++..... ...+|| ++ +|+...+
T Consensus 251 --~--~~~~~l~~~~~~~~~-----~~~~~s-dg--~~~~~~~~------------------~~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 251 --G--KEVMGILDEVDRGVG-----QAKIKD-GK--VYFTLFEE------------------GSVNLY-IW--DGEIKPI 297 (347)
T ss_dssp --S--SCEEESSTTCCSEEE-----EEEEET-TE--EEEEEEET------------------TEEEEE-EE--SSSEEEE
T ss_pred --C--CceEeccccCCcccC-----CccEEc-Cc--EEEEEecC------------------CcEEEE-Ec--CCceEEE
Confidence 4 244555433211111 016699 88 55555221 234677 77 4666666
Q ss_pred eeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCCC
Q 004475 410 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP 472 (751)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~~ 472 (751)
...+.. +. .++|++ .++++..+...+..||.++ |+.++||..+..
T Consensus 298 ~~~~~~-----v~-------~~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~ 342 (347)
T 2gop_A 298 AKGRHW-----IM-------GFDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDP 342 (347)
T ss_dssp ECSSSE-----EE-------EEEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTST
T ss_pred ecCCCe-----EE-------eeeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHh
Confidence 543221 21 246777 5788888888888999998 778888887653
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=197.50 Aligned_cols=237 Identities=18% Similarity=0.184 Sum_probs=155.6
Q ss_pred eEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
.+.+++.+ ..+..+.+.+|+|+++.+. +++|+||++||++... ..+.... .....++.+||+|++
T Consensus 17 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~--~~~p~vv~lHG~~~~~-----------~~~~~~~-~~~~~~~~~g~~vv~ 82 (280)
T 3i6y_A 17 HKQYSHVSNTLNCAMRFAIYLPPQASTG--AKVPVLYWLSGLTCSD-----------ENFMQKA-GAQRLAAELGIAIVA 82 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGTT--CCEEEEEEECCTTCCS-----------SHHHHHS-CCHHHHHHHTCEEEE
T ss_pred EEEEEEeccccCCeeEEEEEeCCCCCCC--CCccEEEEecCCCCCh-----------hHHhhcc-cHHHHHhhCCeEEEE
Confidence 45566655 4577899999999876433 3599999999975321 1111100 123455678999999
Q ss_pred cCCCCCCC------------CCCCCC----C------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 560 GPSIPIIG------------EGDKLP----N------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 560 ~~~~~~~g------------~g~~~~----~------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
++.+ .+| .|.+.. . ..+.....+ ++++++.+...+ +++|+|+||||||++|+.
T Consensus 83 pd~~-~~g~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~ 157 (280)
T 3i6y_A 83 PDTS-PRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVN---ELPELIESMFPV-SDKRAIAGHSMGGHGALT 157 (280)
T ss_dssp ECSS-CCSTTCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHT---HHHHHHHHHSSE-EEEEEEEEETHHHHHHHH
T ss_pred eCCc-ccccccCcccccccccCccccccccCCCccchhhHHHHHHH---HHHHHHHHhCCC-CCCeEEEEECHHHHHHHH
Confidence 6642 111 111100 0 012222333 444555554434 579999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCC--CCEEEEEcCCCCCCCCChHH-HH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIK--KPILIIHGEVDDKVGLFPMQ-AE 694 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~li~~G~~D~~vp~~~~~-~~ 694 (751)
++.++|++++++++++|..+....++.........-.....+...++...+.+++ +|+|++||+.|.++| ... ++
T Consensus 158 ~a~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~ 235 (280)
T 3i6y_A 158 IALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLA--EQLKPE 235 (280)
T ss_dssp HHHHCTTTCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHH--HHTCHH
T ss_pred HHHhCCccccEEEEeCCccccccCchHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCcccc--chhhHH
Confidence 9999999999999999987643222110000000001112233445555555554 899999999999987 544 78
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++.++|++.+.+++++++|+++|.+.. +...+.++++|+.++|+
T Consensus 236 ~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 236 VLEAAASSNNYPLELRSHEGYDHSYYF---IASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCceEEEeCCCCccHHH---HHHhHHHHHHHHHhhcc
Confidence 999999999999999999999998643 55778889999999875
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=180.89 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=157.8
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.++++..+| .+.++++.|.+..+ .+.|+||++||+|+..+.. . ..........|+++||.|+
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~~~---~~~~~vv~~HG~~~~~~~~--------~--~~~~~~~~~~l~~~g~~v~ 73 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPDVA---VQPVTAIVCHPLSTEGGSM--------H--NKVVTMAARALRELGITVV 73 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTTSC---CCSEEEEEECSCTTTTCST--------T--CHHHHHHHHHHHTTTCEEE
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCCCc---cccCEEEEECCCCCcCCcc--------c--chHHHHHHHHHHHCCCeEE
Confidence 4578899998887 89999999976211 2379999999965321100 0 0011245567888999999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
+ .+++|+|.+...........+|+.++++++.++. +.++|+++|||+||.+|+.++.++ +++++|+.+|....
T Consensus 74 ~---~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~ 146 (220)
T 2fuk_A 74 R---FNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGR 146 (220)
T ss_dssp E---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTT
T ss_pred E---EecCCCCCCCCCcccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccc
Confidence 9 4455776665443344567899999999999874 567999999999999999999887 79999999997553
Q ss_pred CCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 639 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
.. ...+. ...|+|+++|++|..+| ...++++++.+. .+++++++++++|.
T Consensus 147 ~~------------------------~~~~~-~~~p~l~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~H~ 196 (220)
T 2fuk_A 147 WD------------------------FSDVQ-PPAQWLVIQGDADEIVD--PQAVYDWLETLE---QQPTLVRMPDTSHF 196 (220)
T ss_dssp BC------------------------CTTCC-CCSSEEEEEETTCSSSC--HHHHHHHHTTCS---SCCEEEEETTCCTT
T ss_pred hh------------------------hhhcc-cCCcEEEEECCCCcccC--HHHHHHHHHHhC---cCCcEEEeCCCCce
Confidence 21 00111 25799999999999998 888888776663 46789999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+.. ...++.+.+.+||.+++..
T Consensus 197 ~~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 197 FHR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp CTT--CHHHHHHHHHHHHGGGCSS
T ss_pred ehh--hHHHHHHHHHHHHHHHhhc
Confidence 864 4668889999999998864
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=191.71 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=143.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.+.||++||.+ +++..| ..++..|+++||.|++ ++.+|+|.+... .....+.++|+.+++
T Consensus 51 ~~~VlllHG~~-----------~s~~~~----~~la~~La~~Gy~Via---~Dl~GhG~S~~~~~~~~~~~~~~d~~~~~ 112 (281)
T 4fbl_A 51 RIGVLVSHGFT-----------GSPQSM----RFLAEGFARAGYTVAT---PRLTGHGTTPAEMAASTASDWTADIVAAM 112 (281)
T ss_dssp SEEEEEECCTT-----------CCGGGG----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEEECCCC-----------CCHHHH----HHHHHHHHHCCCEEEE---ECCCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 46799999942 222222 2456788999999999 667788876321 223456789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----------cCc-------ccc---
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----------FGF-------QTE--- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----------~~~-------~~~--- 648 (751)
++|.+.. ++++|+||||||.+|+.++.++|++++++|++++........ ... ...
T Consensus 113 ~~l~~~~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T 4fbl_A 113 RWLEERC----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVK 188 (281)
T ss_dssp HHHHHHC----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCC
T ss_pred HHHHhCC----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHH
Confidence 9997753 589999999999999999999999999999999875421100 000 000
Q ss_pred ----cccchhhHHHHHhc--CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc
Q 004475 649 ----FRTLWEATNVYIEM--SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 649 ----~~~~~~~~~~~~~~--~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 722 (751)
...++.....+... .....+.++++|+|++||++|.++| +..++.+++.+.. .+++++++|+++|.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e 264 (281)
T 4fbl_A 189 ELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVP--PHNGELIYNGIGS--TEKELLWLENSYHVATLD 264 (281)
T ss_dssp CCCCSEEEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSC--THHHHHHHHHCCC--SSEEEEEESSCCSCGGGS
T ss_pred HhhhccCchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcC--HHHHHHHHHhCCC--CCcEEEEECCCCCcCccc
Confidence 00011111111000 0113467889999999999999999 8999888887753 467999999999987655
Q ss_pred ccHHHHHHHHHHHHHHH
Q 004475 723 ENVMHVIWETDRWLQKY 739 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~ 739 (751)
...+.+.+.+.+||++|
T Consensus 265 ~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 265 NDKELILERSLAFIRKH 281 (281)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 56788899999999875
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=195.28 Aligned_cols=235 Identities=15% Similarity=0.127 Sum_probs=154.8
Q ss_pred eEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
.+.+++.+ ..+..+.+.+|+|+++. .+++|+||++||++... ..+.... .....+..+||+|++
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~-----------~~~~~~~-~~~~~~~~~g~~vv~ 79 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI---HEPCPVVWYLSGLTCTH-----------ANVMEKG-EYRRMASELGLVVVC 79 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG---TSCEEEEEEECCTTCCS-----------HHHHHHS-CCHHHHHHHTCEEEE
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC---CCCCCEEEEEcCCCCCc-----------cchhhcc-cHHHHHhhCCeEEEe
Confidence 44555544 45678999999998753 23589999999975321 1111100 123344566999999
Q ss_pred cCCCCCCCCCCCCCCc-------------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 004475 560 GPSIPIIGEGDKLPND-------------------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 614 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~-------------------------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~ 614 (751)
++. +|+|.+.... .+..... .++++++.+...+|+++|+|+||||||++
T Consensus 80 ~d~---~g~G~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~i~l~G~S~GG~~ 153 (278)
T 3e4d_A 80 PDT---SPRGNDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVT---EELPALIGQHFRADMSRQSIFGHSMGGHG 153 (278)
T ss_dssp CCS---SCCSTTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHH---THHHHHHHHHSCEEEEEEEEEEETHHHHH
T ss_pred cCC---cccCcccccccccccccCCccccccCCcCcccchhhHHHHHH---HHHHHHHHhhcCCCcCCeEEEEEChHHHH
Confidence 554 3444321110 1122222 24666676665677889999999999999
Q ss_pred HHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCC--CCCEEEEEcCCCCCCCCChHH
Q 004475 615 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKI--KKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 615 a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~ 692 (751)
|+.++.++|+.++++++++|..+....++.........-.....+...++...+.++ .+|+|++||+.|.++| ...
T Consensus 154 a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~ 231 (278)
T 3e4d_A 154 AMTIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLE--KGL 231 (278)
T ss_dssp HHHHHHHCTTTCSCEEEESCCSCGGGCTTTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHH--HHT
T ss_pred HHHHHHhCCcccceEEEeCCcccccCCccchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccc--cch
Confidence 999999999999999999998764433221110000000111222334444444443 4699999999999986 432
Q ss_pred -HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 693 -AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 693 -~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++++.++|++.+.+++++++|+++|.+.. +...+..+++|+.++|+
T Consensus 232 ~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 232 RPWLFEEAIKGTDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp CTHHHHHHHTTSSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 68899999999999999999999998643 45678888999988774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-20 Score=209.25 Aligned_cols=309 Identities=14% Similarity=0.158 Sum_probs=195.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC-----CCeeeccC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GEAKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-----g~~~~lt~ 79 (751)
..|+++|+.+ |+.++++.. ...+..++|||||++|||+. ..+||++++++ ++.++++.
T Consensus 101 ~~i~~~d~~~----~~~~~l~~~--~~~~~~~~~SpdG~~la~~~-----------~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 101 GGLVGFDMLA----RKVTYLFDT--NEETASLDFSPVGDRVAYVR-----------NHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp TEEEEEETTT----TEEEEEECC--TTCCTTCEECTTSSEEEEEE-----------TTEEEEEECBCTTSCCCCCEESCS
T ss_pred CEEEEEECCC----CceEEccCC--cccccCCcCCCCCCEEEEEE-----------CCeEEEEecCcccccCCCcEEecc
Confidence 4799999988 888887743 23578999999999999963 26899999999 99998876
Q ss_pred CCCccc-cc---------eeeeeEEecCCcEEEEeecCCCCCCCCC--CCCCCCCceeeccccccccchhhhhccCCccc
Q 004475 80 SPDICL-NA---------VFGSFVWVNNSTLLIFTIPSSRRDPPKK--TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (751)
Q Consensus 80 ~~~~~~-~~---------~~~~~~wspDg~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (751)
...... ++ .+..++|||||++|+|.+.+........ ......+.... ..++..
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~---------------~~y~~~ 228 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP---------------LYYPMA 228 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE---------------ECCCBT
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE---------------eeCCCC
Confidence 654211 00 0368899999999999874322211000 00000000000 001111
Q ss_pred hhhhhhheeeEEEEEcC-CCCceecCC---C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-ee
Q 004475 148 ESLFDYYTTAQLVLGSL-DGTAKDFGT---P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV 221 (751)
Q Consensus 148 ~~~~~~~~~~~l~~~~~-~G~~~~lt~---~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 221 (751)
+. ......|+++|+ +|+.+++.. + ..+..++|||||++|++...++.. ....|++||++++ ..
T Consensus 229 g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 229 GT---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ--------NECKVNAYDAETGRFV 297 (706)
T ss_dssp TS---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS--------CEEEEEEEETTTCCEE
T ss_pred CC---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC--------CeeEEEEEECCCCcee
Confidence 00 012368999999 666666552 2 557799999999999997654321 1357999999987 55
Q ss_pred eeeccCCCCCCCCCccCCccCCCceeeeec--CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece
Q 004475 222 RELCDLPPAEDIPVCYNSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL 299 (751)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp--dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 299 (751)
+.+........ . ..+..+.||| ||+. ++..+ . +...+||.++.+ ++..+.++....
T Consensus 298 ~~~~~~~~~~~----~----~~~~~~~~sp~~dg~~-l~~~~-~---------~g~~~l~~~~~~---~~~~~~l~~~~~ 355 (706)
T 2z3z_A 298 RTLFVETDKHY----V----EPLHPLTFLPGSNNQF-IWQSR-R---------DGWNHLYLYDTT---GRLIRQVTKGEW 355 (706)
T ss_dssp EEEEEEECSSC----C----CCCSCCEECTTCSSEE-EEEEC-T---------TSSCEEEEEETT---SCEEEECCCSSS
T ss_pred eEEEEccCCCe----E----CccCCceeecCCCCEE-EEEEc-c---------CCccEEEEEECC---CCEEEecCCCCe
Confidence 55532111100 0 0123679999 9985 44322 1 123478888864 555666666655
Q ss_pred eEE--EEEecCCceEEEeeeecc-cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCc
Q 004475 300 RFS--VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE 376 (751)
Q Consensus 300 ~~~--~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 376 (751)
.+. +.|||||+.|+|.+.... ....||.++++++ ..+.++... .+.. ++|||||++|++.....
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~------~~~spdg~~l~~~~~~~--- 422 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--KTKDLTPES--GMHR------TQLSPDGSAIIDIFQSP--- 422 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--CCEESCCSS--SEEE------EEECTTSSEEEEEEECS---
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--CceeccCCC--ceEE------EEECCCCCEEEEEecCC---
Confidence 554 799999999998875432 2468999999884 345554321 1122 78999999999886321
Q ss_pred ceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 377 QIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
.....|++||+++++
T Consensus 423 --------------~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 --------------TVPRKVTVTNIGKGS 437 (706)
T ss_dssp --------------SCSCEEEEEESSSCE
T ss_pred --------------CCCcEEEEEECCCCe
Confidence 223469999998887
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=193.57 Aligned_cols=306 Identities=14% Similarity=0.064 Sum_probs=190.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+||++++.+ |+.++++... ......+.|||||++|||++. ..+||++++++++.++++..+.
T Consensus 59 ~~~l~~~d~~~----~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~----------~~~l~~~d~~~~~~~~~~~~~~- 122 (396)
T 3c5m_A 59 NRNYYLLNLET----QQAVQLTEGK-GDNTFGGFISTDERAFFYVKN----------ELNLMKVDLETLEEQVIYTVDE- 122 (396)
T ss_dssp SCEEEEEETTT----TEEEECCCSS-CBCTTTCEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECCT-
T ss_pred CceEEEEECCC----CcEEEeecCC-CCccccceECCCCCEEEEEEc----------CCcEEEEECCCCCcEEEEeccc-
Confidence 34799999988 9888887322 112334899999999999853 2379999999999988876543
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhh--hh----heee
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF--DY----YTTA 157 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~ 157 (751)
.|+|+|++|+|......... . . . . ...+.++..+ .. ....
T Consensus 123 ---------~~~~~g~~l~~~~~~~~~~~-----------~-~-~-----------~-~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 123 ---------EWKGYGTWVANSDCTKLVGI-----------E-I-L-----------K-RDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp ---------TEEEEEEEEECTTSSEEEEE-----------E-E-E-----------G-GGCCCCCSHHHHHHHHHTCCCE
T ss_pred ---------ccCCCCCEEEeccCCccccc-----------c-c-c-----------c-cccCCCCcceeeeeeccCCCcc
Confidence 38999999988633110000 0 0 0 0 0001111111 00 1336
Q ss_pred EEEEEcC-CCCceecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~-~G~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
.|+++++ +|+.+.++.. ..+..+.||| ||++|+|.+... .......|+++++++++.+.+.....
T Consensus 169 ~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~-------~~~~~~~l~~~d~~~~~~~~l~~~~~----- 236 (396)
T 3c5m_A 169 RLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGP-------HDLVDARMWLVNEDGSNVRKIKEHAE----- 236 (396)
T ss_dssp EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC-------SSSCSCCCEEEETTSCCCEESSCCCT-----
T ss_pred eEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCC-------CCCCCceEEEEECCCCceeEeeccCC-----
Confidence 8999999 6677777654 6678899999 899999986421 11112579999998877666543110
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEec-CCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCD-DSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~sp-dg~~l~ 313 (751)
...+..+.|||||++ |++.+..++ ..+..|++++++ ++..+.+....+.. +.||| ||+.|+
T Consensus 237 ------~~~~~~~~~spdg~~-l~~~~~~~~-------~~~~~l~~~d~~---~g~~~~l~~~~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 237 ------GESCTHEFWIPDGSA-MAYVSYFKG-------QTDRVIYKANPE---TLENEEVMVMPPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ------TEEEEEEEECTTSSC-EEEEEEETT-------TCCEEEEEECTT---TCCEEEEEECCSEE-EEEECSSSSEEE
T ss_pred ------CccccceEECCCCCE-EEEEecCCC-------CccceEEEEECC---CCCeEEeeeCCCCC-CCccCCCCceEE
Confidence 112346799999999 677642211 111349999986 45555555443322 78999 999887
Q ss_pred Eeeee------------cccceeEEEecCCCCCCcceeeeeccccc-c---cCCCCCCCeeeCCCCCEEEEeeeecCCcc
Q 004475 314 NETWY------------KTSQTRTWLVCPGSKDVAPRVLFDRVFEN-V---YSDPGSPMMTRTSTGTNVIAKIKKENDEQ 377 (751)
Q Consensus 314 ~~~~~------------~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 377 (751)
+.... ......||++++.++ ..+.++...... . ........++|||||+.|+|.+..
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~----- 371 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAK--SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF----- 371 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTT--BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccC--ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-----
Confidence 75421 113468999999885 445565433210 0 000001126799999999998832
Q ss_pred eEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 378 IYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.....||++++.+++.+.+
T Consensus 372 -------------~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 372 -------------EGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp -------------TSSCEEEEEECCTTCC---
T ss_pred -------------CCCceEEEEEEcccccccc
Confidence 1245799999988776554
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=194.52 Aligned_cols=236 Identities=17% Similarity=0.145 Sum_probs=164.2
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
..+..+.+.+.+.+|..+.++++.|.+ .+ .++.|+||++||++.. ...+.......|+++||.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~--~~~~p~vv~~hG~~~~--------------~~~~~~~~~~~l~~~G~~ 126 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RG--GDRLPAIVIGGPFGAV--------------KEQSSGLYAQTMAERGFV 126 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CC--SSCEEEEEEECCTTCC--------------TTSHHHHHHHHHHHTTCE
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CC--CCCCCEEEEECCCCCc--------------chhhHHHHHHHHHHCCCE
Confidence 345678899998888899999999976 21 2358999999997421 111111246678899999
Q ss_pred EEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 557 VLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
|++ .+++|+|.+.... .......+|+.++++++.++..+|.++|+++|||+||.+++.++.++| +++++|+.+
T Consensus 127 v~~---~d~~g~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~ 202 (367)
T 2hdw_A 127 TLA---FDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTST 202 (367)
T ss_dssp EEE---ECCTTSTTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred EEE---ECCCCcCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEec
Confidence 999 4455666553221 224667899999999999988788889999999999999999999997 689999998
Q ss_pred CCCCC-----CCCc--------------------------cC----cc---ccc--------------------------
Q 004475 634 GSYNK-----TLTP--------------------------FG----FQ---TEF-------------------------- 649 (751)
Q Consensus 634 ~~~d~-----~~~~--------------------------~~----~~---~~~-------------------------- 649 (751)
|.... .... +. .+ ...
T Consensus 203 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (367)
T 2hdw_A 203 MYDMTRVMSKGYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGN 282 (367)
T ss_dssp CCCHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTC
T ss_pred cccccHHHhhhhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccc
Confidence 75210 0000 00 00 000
Q ss_pred ccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 728 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 728 (751)
.........+...++...+.+++ +|+|++||++|. + ...++++++. .+.+++++++|+++|..........+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~i~~~PvLii~G~~D~--~--~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~ 355 (367)
T 2hdw_A 283 AWTMTTPLSFMNMPILTYIKEISPRPILLIHGERAH--S--RYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIP 355 (367)
T ss_dssp CCBTTTHHHHTTSCSCTTGGGGTTSCEEEEEETTCT--T--HHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSC
T ss_pred hhhhhhHHHhcCCChhHhHHhhcCCceEEEecCCCC--C--HHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHH
Confidence 00001122333445666778888 999999999998 6 7887777765 56789999999999985322221126
Q ss_pred HHHHHHHHHHHh
Q 004475 729 IWETDRWLQKYC 740 (751)
Q Consensus 729 ~~~~~~fl~~~l 740 (751)
.+.+.+||.+++
T Consensus 356 ~~~i~~fl~~~l 367 (367)
T 2hdw_A 356 FDRIAGFFDEHL 367 (367)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 788999998875
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=197.83 Aligned_cols=279 Identities=10% Similarity=0.022 Sum_probs=166.3
Q ss_pred CCEEEEEEecCCCCCeEEEEEcCCCceeEeecCCC--CCCCc---cCCceEEEEEEcCCCceEEEEEEcCCCC-CCCCCC
Q 004475 437 QLKILTSKESKTEITQYHILSWPLKKSSQITNFPH--PYPTL---ASLQKEMIKYQRKDGVPLTATLYLPPGY-DQSKDG 510 (751)
Q Consensus 437 g~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~~--~~~~~---~~~~~e~i~~~~~~~~~i~~~~~~P~~~-~~~~~~ 510 (751)
...+.|...+...+...++++. +|...++...+. +.+.. ..+..+.+.+.. +..+.+.+|+|+.. .+ .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~--~~ 81 (338)
T 2o7r_A 7 ETTGSSDPNTNLLKYLPIVLNP-DRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYN--SA 81 (338)
T ss_dssp -----------CTTTCSCEECT-TSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGS--SC
T ss_pred CCceeeccCcccccccceEECC-CCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcC--CC
Confidence 3455555444333444444553 344444321111 11121 346678888874 45688999999753 11 24
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
+.|+||++|||||..++. .. ......+..|+ ++||+|++++++ |.+... ....++|+.+++
T Consensus 82 ~~p~vv~~HGgg~~~~~~--------~~--~~~~~~~~~la~~~g~~vv~~d~r---g~~~~~-----~~~~~~d~~~~~ 143 (338)
T 2o7r_A 82 KLPLVVYFHGGGFILFSA--------AS--TIFHDFCCEMAVHAGVVIASVDYR---LAPEHR-----LPAAYDDAMEAL 143 (338)
T ss_dssp CEEEEEEECCSTTTSCCT--------TB--HHHHHHHHHHHHHHTCEEEEEECC---CTTTTC-----TTHHHHHHHHHH
T ss_pred CceEEEEEcCCcCcCCCC--------Cc--hhHHHHHHHHHHHCCcEEEEecCC---CCCCCC-----CchHHHHHHHHH
Confidence 589999999987643221 11 00123455676 789999995554 443321 235678999999
Q ss_pred HHHHHcC------CCCCCcEEEEEeChHHHHHHHHHHhCCC--------ceeEEEEccCCCCCCCCccCc---ccccccc
Q 004475 590 EEVVRRG------VADPSRIAVGGHSYGAFMTAHLLAHAPH--------LFCCGIARSGSYNKTLTPFGF---QTEFRTL 652 (751)
Q Consensus 590 ~~l~~~~------~id~~~i~l~G~S~GG~~a~~~a~~~p~--------~~~~~v~~~~~~d~~~~~~~~---~~~~~~~ 652 (751)
+|+.++. .+|.++|+|+||||||++|+.++.++|+ +++++|+.+|.++........ .......
T Consensus 144 ~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~ 223 (338)
T 2o7r_A 144 QWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLP 223 (338)
T ss_dssp HHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSC
T ss_pred HHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccC
Confidence 9998762 2566899999999999999999999887 899999999986533210000 0000000
Q ss_pred hhhHHH-HH------------hcCcc---------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 653 WEATNV-YI------------EMSPI---------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 653 ~~~~~~-~~------------~~~~~---------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
...... +. ..++. ..+.++.+|+|+++|++|.+++ .+.+++++|++.+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~----~~~~~~~~l~~~~~~~~~~ 299 (338)
T 2o7r_A 224 TFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID----RQMELAERLEKKGVDVVAQ 299 (338)
T ss_dssp HHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH----HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH----HHHHHHHHHHHCCCcEEEE
Confidence 000000 00 00111 1122345699999999999864 4577889999988999999
Q ss_pred EeCCCCCcCCcc--ccHHHHHHHHHHHHHHHhcC
Q 004475 711 LLPFEHHVYAAR--ENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 711 ~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~l~~ 742 (751)
++++++|.+... +....+.+.+.+||.+++..
T Consensus 300 ~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 300 FDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp EESSCCTTGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred EECCCceEEeccChHHHHHHHHHHHHHHHhhccc
Confidence 999999987532 23467889999999988753
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=195.32 Aligned_cols=240 Identities=18% Similarity=0.164 Sum_probs=153.1
Q ss_pred eEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
.+.+++.+ ..+..+.+.+|+|+++.. +++|+||++||+++... .+... ......++++||+|++
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~p~vv~lHG~~~~~~-----------~~~~~-~~~~~~~~~~g~~vv~ 80 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAET---GKCPALYWLSGLTCTEQ-----------NFISK-SGYHQSASEHGLVVIA 80 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGT---SCEEEEEEECCTTCCSH-----------HHHHH-SCCHHHHHHHTCEEEE
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCCC---CCCCEEEEEcCCCCCcc-----------chhhc-chHHHHhhcCCeEEEE
Confidence 34444443 456789999999987532 35999999999863221 11100 0124567789999999
Q ss_pred cCCCCCCCCCCCC-----------------CCchhH---HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 004475 560 GPSIPIIGEGDKL-----------------PNDRFV---EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 560 ~~~~~~~g~g~~~-----------------~~~~~~---~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
++.. .+|.+... ....+. ......+..+++++.+...+|++||+|+||||||++|+.++
T Consensus 81 ~d~~-~rG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 159 (282)
T 3fcx_A 81 PDTS-PRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICA 159 (282)
T ss_dssp ECSC-SSCCCC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eccc-cCccccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHH
Confidence 7651 13322110 000110 11122233555666655558889999999999999999999
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccc---cCCCCCCEEEEEcCCCCCCCCChHH--HH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITH---ANKIKKPILIIHGEVDDKVGLFPMQ--AE 694 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~li~~G~~D~~vp~~~~~--~~ 694 (751)
.++|++++++++++|..+....++...............+...++... +..+++|+|++||+.|.++| ... ++
T Consensus 160 ~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~ 237 (282)
T 3fcx_A 160 LKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLL--DGQLLPD 237 (282)
T ss_dssp HTSTTTSSCEEEESCCCCGGGSHHHHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHH--TTSSCHH
T ss_pred HhCcccceEEEEeCCccCcccCchhHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccc--cchhhHH
Confidence 999999999999999876432221100000000000111222333333 33447999999999999986 443 56
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++.++|++.+.+++++++|+++|.+.. +...+.+.+.|+.++|.
T Consensus 238 ~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 238 NFIAACTEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 889999999999999999999999743 55678888999998875
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-20 Score=186.74 Aligned_cols=234 Identities=18% Similarity=0.114 Sum_probs=162.5
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 555 (751)
..+..+.++++..++ .+.+.+|.|.+ .++.|+||++|||||..++. ..+ ...+..|+. .||
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~-----~~~~p~vv~~HGGg~~~g~~--------~~~----~~~~~~La~~~g~ 122 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT-----QGPYGVLVYYHGGGFVLGDI--------ESY----DPLCRAITNSCQC 122 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS-----CSCCCEEEEECCSTTTSCCT--------TTT----HHHHHHHHHHHTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC-----CCCCcEEEEECCCccccCCh--------HHH----HHHHHHHHHhcCC
Confidence 456788999987766 89999999975 23479999999998643221 111 244566775 499
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCC-C-CCCcEEEEEeChHHHHHHHHHHhCCCce---eEEE
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGV-A-DPSRIAVGGHSYGAFMTAHLLAHAPHLF---CCGI 630 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~-i-d~~~i~l~G~S~GG~~a~~~a~~~p~~~---~~~v 630 (751)
.|+++++ +|.++... ....+|+.++++|+.+... + |+++|+|+|+|+||.+|+.++.+.|++. +++|
T Consensus 123 ~Vv~~Dy---rg~~~~~~-----p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~v 194 (323)
T 3ain_A 123 VTISVDY---RLAPENKF-----PAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQV 194 (323)
T ss_dssp EEEEECC---CCTTTSCT-----THHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred EEEEecC---CCCCCCCC-----cchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEE
Confidence 9999554 55555321 3457888999999987631 2 7889999999999999999999887765 8999
Q ss_pred EccCCCCCCCCccCcccc-cccchhh--H----HHH---------HhcCcccc-cCCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 631 ARSGSYNKTLTPFGFQTE-FRTLWEA--T----NVY---------IEMSPITH-ANKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~-~~~~~~~--~----~~~---------~~~~~~~~-~~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
+++|..+........... ....+.. . ..| ...+++.. +..+ +|+||++|+.|.++ .++
T Consensus 195 l~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~----~~~ 269 (323)
T 3ain_A 195 LIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPLR----DQG 269 (323)
T ss_dssp EESCCCSCCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTTH----HHH
T ss_pred EEeccccCCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCccH----HHH
Confidence 999987643221000000 0000000 0 001 01123222 2222 49999999999974 567
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhc
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 741 (751)
..+++++...+.+++++++++++|.+... +....+.+.+.+||.+++.
T Consensus 270 ~~~a~~l~~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 270 EAYANKLLQSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999998642 3456889999999999875
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=193.06 Aligned_cols=237 Identities=16% Similarity=0.191 Sum_probs=154.9
Q ss_pred eEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
.+.+++.+ ..+..+.+.+|+|+++.+. +++|+||++||+++.. ..+... ......++.+||+|++
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~--~~~P~vv~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~vv~ 80 (280)
T 3ls2_A 15 HKQYTHSAVSTHCTMRFAVFLPPGASES--NKVPVLYWLSGLTCTD-----------ENFMQK-AGAFKKAAELGIAIVA 80 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECTTCBTT--BCEEEEEEECCTTCCS-----------HHHHHH-SCCHHHHHHHTCEEEE
T ss_pred EEEEEEechhcCCceEEEEEcCCCCCCC--CCcCEEEEeCCCCCCh-----------hhhhcc-hhHHHHHhhCCeEEEE
Confidence 45566655 4577899999999986533 3599999999975321 111100 0123455678999999
Q ss_pred cCCCCCCC------------CCCCCC----------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 560 GPSIPIIG------------EGDKLP----------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 560 ~~~~~~~g------------~g~~~~----------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
++.+ .+| .|.+.. ...+.....++ ++.++.+...+ .++++|+||||||++|+.
T Consensus 81 ~d~~-~~g~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~ 155 (280)
T 3ls2_A 81 PDTS-PRGDNVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNE---LPALIEQHFPV-TSTKAISGHSMGGHGALM 155 (280)
T ss_dssp CCSS-CCSTTSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTH---HHHHHHHHSSE-EEEEEEEEBTHHHHHHHH
T ss_pred eCCc-ccccccccccccccccCCccccccccccccccccHHHHHHHH---HHHHHHhhCCC-CCCeEEEEECHHHHHHHH
Confidence 6642 111 111100 01223333333 34455444333 379999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCC----CCCEEEEEcCCCCCCCCChHH-
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKI----KKPILIIHGEVDDKVGLFPMQ- 692 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~P~li~~G~~D~~vp~~~~~- 692 (751)
++.++|+.|+++++++|..+....++...............+...++...+.++ .+|+|++||+.|.+++ ...
T Consensus 156 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~ 233 (280)
T 3ls2_A 156 IALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLD--EQLK 233 (280)
T ss_dssp HHHHSTTTCSCEEEESCCSCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCC--CCCC
T ss_pred HHHhCchhheEEEEecCccCcccCcchhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccC--Cchh
Confidence 999999999999999998764332211000000000111223344555555554 4699999999999998 543
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+++++++|++.+.+++++++|+++|.+.. +...+..+++|+.++|.
T Consensus 234 ~~~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 234 PQNLVAVAKQKDYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999998643 55678888999999875
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=193.24 Aligned_cols=234 Identities=17% Similarity=0.155 Sum_probs=164.1
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~ 555 (751)
..+..+.++++..+|..|.+++|.|.+ ++.|+||++|||||..++. .. ....+..++ ..||
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~------~~~p~vv~~HGgG~~~g~~--------~~----~~~~~~~la~~~g~ 117 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP------TPAPVVVYCHAGGFALGNL--------DT----DHRQCLELARRARC 117 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC------SSEEEEEEECCSTTTSCCT--------TT----THHHHHHHHHHHTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC------CCCcEEEEECCCcCccCCh--------HH----HHHHHHHHHHHcCC
Confidence 456788999998888899999999975 2489999999998643321 11 124455666 4599
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeE
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCC 628 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~ 628 (751)
+|++++++...++ ......+|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+.++ .+++
T Consensus 118 ~vv~~dyr~~p~~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~ 189 (317)
T 3qh4_A 118 AVVSVDYRLAPEH--------PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIF 189 (317)
T ss_dssp EEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCE
T ss_pred EEEEecCCCCCCC--------CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeE
Confidence 9999776533221 1245578899999999885 45788999999999999999999987654 4899
Q ss_pred EEEccCCCCCCCCccCcccccccchhh------HHHHHh-------cCcccccCCCC--CCEEEEEcCCCCCCCCChHHH
Q 004475 629 GIARSGSYNKTLTPFGFQTEFRTLWEA------TNVYIE-------MSPITHANKIK--KPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~--~P~li~~G~~D~~vp~~~~~~ 693 (751)
+++++|..+...............+.. ...|.. .++.. ...++ +|+||+||+.|.++ .++
T Consensus 190 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~~lpP~li~~G~~D~~~----~~~ 264 (317)
T 3qh4_A 190 QLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGR-RGQLAGLPATLITCGEIDPFR----DEV 264 (317)
T ss_dssp EEEESCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGG-CSCCTTCCCEEEEEEEESTTH----HHH
T ss_pred EEEECceecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCc-ccccCCCCceeEEecCcCCCc----hhH
Confidence 999999987541110000000000100 011111 11111 11222 59999999999884 467
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhc
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 741 (751)
.++.++|.+.+.+++++++++++|.|... +...++++.+.+||.+++.
T Consensus 265 ~~~a~~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 265 LDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999999997432 4457889999999999875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=212.78 Aligned_cols=247 Identities=11% Similarity=0.013 Sum_probs=174.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+||.+++.+ +..+.++... ....++|||||++|||.. ...||++++++++...+.......
T Consensus 226 ~~l~~~~~~g----~~~~~l~~~~---~~~~~~~SpDG~~la~~~-----------~~~i~~~d~~~~~l~~l~~~~~~~ 287 (1045)
T 1k32_A 226 GQIYSTDLDG----KDLRKHTSFT---DYYPRHLNTDGRRILFSK-----------GGSIYIFNPDTEKIEKIEIGDLES 287 (1045)
T ss_dssp CEEEEEETTS----CSCEECCCCC---SSCEEEEEESSSCEEEEE-----------TTEEEEECTTTCCEEECCCCCCCB
T ss_pred eEEEEEeCCC----CcceEecCCC---CcceeeEcCCCCEEEEEe-----------CCEEEEecCCceEeeeeccCcccc
Confidence 4688888877 7778776322 356789999999999953 368999998666555543321000
Q ss_pred ------ccceeeeeEEe-cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 85 ------LNAVFGSFVWV-NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 85 ------~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
....+..++|| |||++|++.+. .
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~~--------------------------------------------------~ 317 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVSR--------------------------------------------------G 317 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEET--------------------------------------------------T
T ss_pred cccccccccccceeeecCCCCCEEEEEEc--------------------------------------------------C
Confidence 01125688999 99999999841 4
Q ss_pred EEEEEcC-CCCceecCCC-c-eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEE-EEeCCCceeeeeccCCCCCCC
Q 004475 158 QLVLGSL-DGTAKDFGTP-A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ-VWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 158 ~l~~~~~-~G~~~~lt~~-~-~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~-~~d~~~~~~~~l~~~~~~~~~ 233 (751)
.|+++++ +|+.++++.+ . .+..++|| ||++|++.+. ...++ ++++++++.+.+....
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-------------~~~l~~~~d~~~~~~~~l~~~~----- 378 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-------------EGDFLGIYDYRTGKAEKFEENL----- 378 (1045)
T ss_dssp EEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-------------TEEEEEEEETTTCCEEECCCCC-----
T ss_pred EEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-------------CCceEEEEECCCCCceEecCCc-----
Confidence 7899999 5677777766 5 78899999 9999998754 23688 9999888777664211
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-eeceeEE-EEEecCCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~-~~~spdg~~ 311 (751)
..+..++|||||++ |++.+ .++.|++++++ ++....+. ...+.+. ++|||||++
T Consensus 379 --------~~~~~~~~SpDG~~-la~~~------------~~~~v~~~d~~---tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 379 --------GNVFAMGVDRNGKF-AVVAN------------DRFEIMTVDLE---TGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp --------CSEEEEEECTTSSE-EEEEE------------TTSEEEEEETT---TCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred --------cceeeeEECCCCCE-EEEEC------------CCCeEEEEECC---CCceEEeccCCCCCccceEECCCCCe
Confidence 22457899999999 77754 23589999986 55555555 4455556 999999999
Q ss_pred EEEeeeec------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 312 LVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 312 l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
|++..... .....|++++++++ ..+.++...... .. ++|||||+.|++.+.
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g--~~~~l~~~~~~~-~~------~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENSHD-YA------PAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTT--EEEECSCSSSBE-EE------EEECTTSCEEEEEES
T ss_pred EEEEecCccccccCCCCCeEEEEECCCC--cEEEeeCCCccc-CC------ceEcCCCCEEEEEec
Confidence 99887543 23468999999884 345554432221 11 789999999998875
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=196.19 Aligned_cols=220 Identities=15% Similarity=0.100 Sum_probs=152.4
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 570 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~ 570 (751)
+..+...+|.|... .++.|+||++|||||..++. ..+ ...+..|+++||+|+++++ ++.+.
T Consensus 65 ~~~~~~~~~~p~~~----~~~~p~vv~~HGgg~~~~~~--------~~~----~~~~~~l~~~G~~v~~~d~---r~~~~ 125 (303)
T 4e15_A 65 EGRQLVDVFYSEKT----TNQAPLFVFVHGGYWQEMDM--------SMS----CSIVGPLVRRGYRVAVMDY---NLCPQ 125 (303)
T ss_dssp STTCEEEEEECTTC----CTTCCEEEEECCSTTTSCCG--------GGS----CTTHHHHHHTTCEEEEECC---CCTTT
T ss_pred CCCcEEEEEecCCC----CCCCCEEEEECCCcCcCCCh--------hHH----HHHHHHHHhCCCEEEEecC---CCCCC
Confidence 44567888888642 23589999999987654321 111 2346778899999999555 44443
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCC-------CceeEEEEccCCCCCCCCc
Q 004475 571 KLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAP-------HLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 571 ~~~~~~~~~~~~~d~~~~v~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~p-------~~~~~~v~~~~~~d~~~~~ 642 (751)
. ......+|+..+++|+.+. ..+++++|+|+||||||++|+.++++.+ ++++++|+++|.++.....
T Consensus 126 ~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~ 200 (303)
T 4e15_A 126 V-----TLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELS 200 (303)
T ss_dssp S-----CHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHH
T ss_pred C-----ChhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhh
Confidence 2 2456788999999999873 2356789999999999999999998653 2799999999987742211
Q ss_pred cCc-ccccccchhhHHHHHhcCcc-cccCCC----CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 004475 643 FGF-QTEFRTLWEATNVYIEMSPI-THANKI----KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716 (751)
Q Consensus 643 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (751)
... ...........+.+...++. ..+.++ ++|+|++||++|..+| ..+++++++++++.|.+++++++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~g~~ 278 (303)
T 4e15_A 201 NLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTF--IEQSRHYADVLRKKGYKASFTLFKGYD 278 (303)
T ss_dssp TCTTTSGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHH--HHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred cccccchhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 100 00001111122334455666 455555 8999999999999999 999999999999999999999999999
Q ss_pred CcCCccccHHHHHHHHHHHHH
Q 004475 717 HVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 717 H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|... .+........+.+||.
T Consensus 279 H~~~-~~~~~~~~~~l~~~l~ 298 (303)
T 4e15_A 279 HFDI-IEETAIDDSDVSRFLR 298 (303)
T ss_dssp TTHH-HHGGGSTTSHHHHHHH
T ss_pred chHH-HHHHhCCCcHHHHHHH
Confidence 9532 3333333334455544
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=188.57 Aligned_cols=234 Identities=15% Similarity=0.150 Sum_probs=164.6
Q ss_pred CceEEE-EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 479 LQKEMI-KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 479 ~~~e~i-~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
+..+++ .+...+|..+.+.++.|.+ .+.|+||++||.+... . ....+...|+++||.|
T Consensus 32 ~~~~~~~~~~~~dg~~l~~~~~~p~~------~~~p~vv~~HG~~~~~-----------~----~~~~~~~~l~~~g~~v 90 (342)
T 3hju_A 32 IPYQDLPHLVNADGQYLFCRYWKPTG------TPKALIFVSHGAGEHS-----------G----RYEELARMLMGLDLLV 90 (342)
T ss_dssp CBTTSSCEEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------G----GGHHHHHHHHTTTEEE
T ss_pred cccccCceEEccCCeEEEEEEeCCCC------CCCcEEEEECCCCccc-----------c----hHHHHHHHHHhCCCeE
Confidence 444455 6677899999999998864 2369999999975211 1 1224566788889999
Q ss_pred EEcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 558 LAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
++ ++.+|+|.+... .......++|+.++++++... .+..+|+|+|||+||.+|+.++.++|++++++|+++|
T Consensus 91 i~---~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 165 (342)
T 3hju_A 91 FA---HDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISP 165 (342)
T ss_dssp EE---ECCTTSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC
T ss_pred EE---EcCCCCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECc
Confidence 99 556677766432 233567789999999999887 3457899999999999999999999999999999998
Q ss_pred CCCCCCCccCcc-----------------cccccch-----hhHHHHHh---------------------cCcccccCCC
Q 004475 635 SYNKTLTPFGFQ-----------------TEFRTLW-----EATNVYIE---------------------MSPITHANKI 671 (751)
Q Consensus 635 ~~d~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~---------------------~~~~~~~~~~ 671 (751)
............ ......+ .....+.. ......+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 245 (342)
T 3hju_A 166 LVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKL 245 (342)
T ss_dssp CCSCCTTTTSHHHHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGC
T ss_pred ccccchhhhhHHHHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 765321110000 0000000 00000000 0112346778
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHHHHHHhcC
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~l~~ 742 (751)
++|+|+++|++|.++| ...+..+++.+.. ..++++++++++|.+..... ..+.+..+++||.+++..
T Consensus 246 ~~Pvlii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (342)
T 3hju_A 246 TVPFLLLQGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 314 (342)
T ss_dssp CSCEEEEEETTCSSSC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCEEEEEeCCCcccC--hHHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999998 8888888877653 35799999999999864322 457788899999998864
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=189.35 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=162.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-Ce
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 555 (751)
.....+.++++..++ .+.+++|.|.+. .++.|+||++|||||..++. ..+ ...+..|+++ ||
T Consensus 44 ~~~~~~~~~i~~~~g-~l~~~~~~P~~~----~~~~p~vv~~HGGg~~~g~~--------~~~----~~~~~~la~~~g~ 106 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR-TLKVRMYRPEGV----EPPYPALVYYHGGSWVVGDL--------ETH----DPVCRVLAKDGRA 106 (310)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEECTTC----CSSEEEEEEECCSTTTSCCT--------TTT----HHHHHHHHHHHTS
T ss_pred CcceEEEEEeccCCC-eEEEEEEecCCC----CCCCCEEEEECCCccccCCh--------hHh----HHHHHHHHHhcCC
Confidence 446788899988776 899999999753 23489999999987643221 111 2455677775 99
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeE
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCC 628 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~ 628 (751)
.|+++++ +|.+... .....+|+..+++|+.++. .+|+++|+|+||||||.+|+.++.++|+ .+++
T Consensus 107 ~v~~~d~---rg~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~ 178 (310)
T 2hm7_A 107 VVFSVDY---RLAPEHK-----FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAF 178 (310)
T ss_dssp EEEEECC---CCTTTSC-----TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEeCC---CCCCCCC-----CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceE
Confidence 9999555 4554432 1345788999999998864 3677899999999999999999998765 6999
Q ss_pred EEEccCCCCCC--CCccCcccc-cccchh--hH----HHH---------HhcCccc--ccCCCCCCEEEEEcCCCCCCCC
Q 004475 629 GIARSGSYNKT--LTPFGFQTE-FRTLWE--AT----NVY---------IEMSPIT--HANKIKKPILIIHGEVDDKVGL 688 (751)
Q Consensus 629 ~v~~~~~~d~~--~~~~~~~~~-~~~~~~--~~----~~~---------~~~~~~~--~~~~~~~P~li~~G~~D~~vp~ 688 (751)
+|+++|..+.. ......... ....+. .. ..| ...++.. .+..+ +|+|++||++|.++
T Consensus 179 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~-- 255 (310)
T 2hm7_A 179 QLLIYPSTGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR-- 255 (310)
T ss_dssp EEEESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--
T ss_pred EEEEcCCcCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--
Confidence 99999987654 110000000 000000 00 001 0112221 12222 49999999999974
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhc
Q 004475 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 741 (751)
.++..+++++++.+.+++++++++++|.+... +...++...+.+||.++++
T Consensus 256 --~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 256 --DVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp --HHHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999987542 3446788999999998763
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-20 Score=190.20 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=160.6
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCC------------CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCc
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQ------------SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP 544 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~------------~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~ 544 (751)
..+..+.+.+.. +..+.+.+|.|+.... ...++.|+||++|||||..+.. .. ....
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~--------~~--~~~~ 135 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSA--------NS--AIYD 135 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCT--------TB--HHHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCC--------cc--hhHH
Confidence 345677787764 4568999999976420 1134689999999987643211 11 0012
Q ss_pred hHHHHHH-hCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEeChHHHHHHHH
Q 004475 545 TSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG----VADPS-RIAVGGHSYGAFMTAHL 618 (751)
Q Consensus 545 ~~~~~~~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~----~id~~-~i~l~G~S~GG~~a~~~ 618 (751)
..+..|+ ++||+|++++++ |.+... .....+|+.++++|+.++. .+|++ +|+|+||||||++|+.+
T Consensus 136 ~~~~~la~~~g~~vv~~d~r---g~~~~~-----~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~ 207 (351)
T 2zsh_A 136 TLCRRLVGLCKCVVVSVNYR---RAPENP-----YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207 (351)
T ss_dssp HHHHHHHHHHTSEEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCC---CCCCCC-----CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHH
Confidence 3456777 789999995554 443321 2355789999999998754 47888 99999999999999999
Q ss_pred HHhCCC---ceeEEEEccCCCCCCCCccCcccccccch---hhHH-HHHh------------cCc----ccccCCCCC-C
Q 004475 619 LAHAPH---LFCCGIARSGSYNKTLTPFGFQTEFRTLW---EATN-VYIE------------MSP----ITHANKIKK-P 674 (751)
Q Consensus 619 a~~~p~---~~~~~v~~~~~~d~~~~~~~~~~~~~~~~---~~~~-~~~~------------~~~----~~~~~~~~~-P 674 (751)
+.++|+ +++++|+++|.++................ .... .+.. .++ ...+.++++ |
T Consensus 208 a~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP 287 (351)
T 2zsh_A 208 ALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPK 287 (351)
T ss_dssp HHHHHTTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCE
T ss_pred HHHhhccCCCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCC
Confidence 999887 89999999998763321100000000000 0000 0000 111 123444555 9
Q ss_pred EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc---ccHHHHHHHHHHHHHH
Q 004475 675 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR---ENVMHVIWETDRWLQK 738 (751)
Q Consensus 675 ~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~ 738 (751)
+|+++|++|.++ ..+..++++|++.+.+++++++++++|.+... +....+.+.+.+||.+
T Consensus 288 ~Lii~G~~D~~~----~~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 288 SLVVVAGLDLIR----DWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEETTSTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCcch----HHHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 999999999985 35678899999998899999999999998642 4567788899999874
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-20 Score=187.73 Aligned_cols=238 Identities=18% Similarity=0.148 Sum_probs=164.1
Q ss_pred cCCceEEEEEEcCCCc-eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CC
Q 004475 477 ASLQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RR 554 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~-~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 554 (751)
..+..+.++++..+|. .+.+++|.|.+. .++.|+||++|||||..++ ...+ ...+..++. .|
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~----~~~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~G 110 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGT--------AESS----DPFCVEVARELG 110 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCC--------GGGG----HHHHHHHHHHHC
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC----CCCCcEEEEECCCccccCC--------hhhh----HHHHHHHHHhcC
Confidence 4567888999888876 799999999742 2358999999998754321 1111 234556676 59
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cee
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFC 627 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~ 627 (751)
|.|++++ ++|+|++.. ....+|+..+++|+.+. ..+|+++|+|+|||+||++|+.++.+.|+ .++
T Consensus 111 ~~Vv~~d---~rg~~~~~~-----~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~ 182 (323)
T 1lzl_A 111 FAVANVE---YRLAPETTF-----PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 182 (323)
T ss_dssp CEEEEEC---CCCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cEEEEec---CCCCCCCCC-----CchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCee
Confidence 9999954 456655422 23467888899999774 23677899999999999999999988765 489
Q ss_pred EEEEccCCCCCCCCccCccc-ccccchhh------HHHHHh--------------cCcccccCCCC--CCEEEEEcCCCC
Q 004475 628 CGIARSGSYNKTLTPFGFQT-EFRTLWEA------TNVYIE--------------MSPITHANKIK--KPILIIHGEVDD 684 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~~~-~~~~~~~~------~~~~~~--------------~~~~~~~~~~~--~P~li~~G~~D~ 684 (751)
++++++|..+.......... .....|.. ...|.. .++... ..++ +|+|++||++|.
T Consensus 183 ~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~ 261 (323)
T 1lzl_A 183 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDP 261 (323)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCT
T ss_pred EEEEECCccCCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCC
Confidence 99999998774432100000 00001100 011110 112211 1222 799999999998
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc---cHHHHHHHHHHHHHHHhcCC
Q 004475 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 685 ~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~fl~~~l~~~ 743 (751)
+ ..++..++++|.+.+.+++++++++++|.+.... ...++++.+.+||.+++...
T Consensus 262 ~----~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 262 L----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp T----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred c----hHHHHHHHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 7 4577889999999999999999999999875332 25678899999999998643
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=178.65 Aligned_cols=225 Identities=12% Similarity=0.108 Sum_probs=153.7
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.++..+...+|..+.+.+|.|.. .++.|+||++||+++..++ ...+.......+++. |.|+++
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~~~-----------~~~~~~~~~~~l~~~-~~v~~~ 65 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-----QPTKGVIVYIHGGGLMFGK-----------ANDLSPQYIDILTEH-YDLIQL 65 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-----SSCSEEEEEECCSTTTSCC-----------TTCSCHHHHHHHTTT-EEEEEE
T ss_pred ceEEEEecCCcEEEEEEEEccCC-----CCCCCEEEEEECCcccCCc-----------hhhhHHHHHHHHHhC-ceEEee
Confidence 45667778899999999999874 2357999999998643221 111222444555555 999995
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 561 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
|+ +|.+.. ......+|+.++++++.+. ++..+++|+||||||.+|+.++.+ ++++++|+.+|..+...
T Consensus 66 d~---~~~~~~-----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~ 133 (275)
T 3h04_A 66 SY---RLLPEV-----SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINT 133 (275)
T ss_dssp CC---CCTTTS-----CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCS
T ss_pred cc---ccCCcc-----ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccc
Confidence 54 455443 2356688999999999887 466899999999999999999999 78999999999876421
Q ss_pred CccCcc---------------------c---ccccchhhHHH-------------HHh-------cC-cccccCCCCCCE
Q 004475 641 TPFGFQ---------------------T---EFRTLWEATNV-------------YIE-------MS-PITHANKIKKPI 675 (751)
Q Consensus 641 ~~~~~~---------------------~---~~~~~~~~~~~-------------~~~-------~~-~~~~~~~~~~P~ 675 (751)
...... . ........... +.. .. ....+.+++ |+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~ 212 (275)
T 3h04_A 134 EPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PV 212 (275)
T ss_dssp HHHHSCCHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CE
T ss_pred cccccccchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CE
Confidence 100000 0 00000000000 000 00 011135666 99
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH--HHHHHHHHHHHHHHhc
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 741 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l~ 741 (751)
|+++|++|..+| ...+..+++.+ ...+++++++++|.+...... .++++.+.+||++++.
T Consensus 213 lii~G~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 213 FIAHCNGDYDVP--VEESEHIMNHV----PHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEEETTCSSSC--THHHHHHHTTC----SSEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCC--hHHHHHHHHhc----CCceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999998 88887776544 356899999999998755443 7899999999999874
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=178.63 Aligned_cols=228 Identities=17% Similarity=0.134 Sum_probs=161.1
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..+.+.+. .+|..+.++++.|.+ .+.|+||++||.+.. ........+...|+++||.|++
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~------~~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~ 80 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG------EIYDMAIIFHGFTAN-------------RNTSLLREIANSLRDENIASVR 80 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS------SSEEEEEEECCTTCC-------------TTCHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEec-cCCEEEEEEEEcCCC------CCCCEEEEEcCCCCC-------------ccccHHHHHHHHHHhCCcEEEE
Confidence 45666665 578899999999864 137999999997521 0111122456678889999999
Q ss_pred cCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 560 GPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
++.+|+|.+.... .......+|+.+++++++++..+ ++|+++|||+||.+|+.++.++|++++++|+++|...
T Consensus 81 ---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 155 (270)
T 3pfb_A 81 ---FDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAAT 155 (270)
T ss_dssp ---ECCTTSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTH
T ss_pred ---EccccccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccc
Confidence 5556777664432 23567789999999999876433 5899999999999999999999999999999998754
Q ss_pred CCC------------CccCccccc-----ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 638 KTL------------TPFGFQTEF-----RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 638 ~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
... .+....... .........+........+.++++|+|+++|++|..+| ...+..+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~ 233 (270)
T 3pfb_A 156 LKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVS--PNASKKYDQIY 233 (270)
T ss_dssp HHHHHHHTEETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHC
T ss_pred cchhhhhhhhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCC--HHHHHHHHHhC
Confidence 110 000000000 00001122334445556678899999999999999998 88888777664
Q ss_pred HhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 701 KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..++++++++++|.+. .+....+.+.+.+||.++
T Consensus 234 ----~~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 234 ----QNSTLHLIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp ----SSEEEEEETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred ----CCCeEEEcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 3579999999999976 556778888899998764
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=187.92 Aligned_cols=230 Identities=14% Similarity=0.128 Sum_probs=153.2
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCe
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRF 555 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 555 (751)
..+..+.+.+ ++..+ +.|++. ....|+||++|||||..++. ..+ ...+..|+. .||
T Consensus 56 ~~~~~~~~~~---~g~~~----~~p~~~----~~~~~~vv~~HGgg~~~g~~--------~~~----~~~~~~la~~~g~ 112 (322)
T 3k6k_A 56 EGVELTLTDL---GGVPC----IRQATD----GAGAAHILYFHGGGYISGSP--------STH----LVLTTQLAKQSSA 112 (322)
T ss_dssp TTCEEEEEEE---TTEEE----EEEECT----TCCSCEEEEECCSTTTSCCH--------HHH----HHHHHHHHHHHTC
T ss_pred CCceEEEEEE---CCEeE----EecCCC----CCCCeEEEEEcCCcccCCCh--------HHH----HHHHHHHHHhcCC
Confidence 3445555554 45444 456541 11234499999998643221 111 134456665 499
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEE
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIA 631 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~ 631 (751)
+|++++++ +.++.. ....++|+.++++|+.++ .+|+++|+|+|+|+||++|+.++.+.|+. ++++|+
T Consensus 113 ~v~~~dyr---~~~~~~-----~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 183 (322)
T 3k6k_A 113 TLWSLDYR---LAPENP-----FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVM 183 (322)
T ss_dssp EEEEECCC---CTTTSC-----TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEE
T ss_pred EEEEeeCC---CCCCCC-----CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 99996664 433321 235578999999999987 46889999999999999999999987665 899999
Q ss_pred ccCCCCCCCCccCcccc-cccch---hh----HHHHH--------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHH
Q 004475 632 RSGSYNKTLTPFGFQTE-FRTLW---EA----TNVYI--------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAER 695 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~-~~~~~---~~----~~~~~--------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~ 695 (751)
++|..+........... ...++ .. ...|. ..+|+.......+|+||+||+.|.+ ..++..
T Consensus 184 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~----~~~~~~ 259 (322)
T 3k6k_A 184 LSPFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEAL----LSDSTT 259 (322)
T ss_dssp ESCCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTT----HHHHHH
T ss_pred ecCCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCcc----HHHHHH
Confidence 99988754322111000 00000 00 01111 1233332223347999999999987 567889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHhcC
Q 004475 696 FFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~~ 742 (751)
++++|++.|.++++++||+++|.+... +...++++.+.+||.+++..
T Consensus 260 ~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (322)
T 3k6k_A 260 LAERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISK 310 (322)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998643 33568899999999999875
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-19 Score=175.61 Aligned_cols=221 Identities=16% Similarity=0.166 Sum_probs=150.9
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCC---CchHHHHHHhC-
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM---TPTSSLIFLAR- 553 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~- 553 (751)
-..+.+.+.+. .+..+.+.+|+|+++.+. +++|+||++||++... ..+... .......|+++
T Consensus 30 g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~--~~~P~vv~lHG~g~~~-----------~~~~~~~~~~~~~~~~l~~~g 96 (268)
T 1jjf_A 30 GQVVNISYFSTATNSTRPARVYLPPGYSKD--KKYSVLYLLHGIGGSE-----------NDWFEGGGRANVIADNLIAEG 96 (268)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCCTT--SCBCEEEEECCTTCCT-----------TTTTTTTTCHHHHHHHHHHTT
T ss_pred ceEEEEEEeccccCCceEEEEEeCCCCCCC--CCccEEEEECCCCCCc-----------chhhhccccHHHHHHHHHHcC
Confidence 34677777764 467899999999886543 3599999999976221 112111 11234566665
Q ss_pred ---CeEEEEcCCCCCCCCCCCCCCchhHHHHHHH-HHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 004475 554 ---RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSS-AEAAVEEVVRRGVA--DPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627 (751)
Q Consensus 554 ---G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d-~~~~v~~l~~~~~i--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 627 (751)
||+|+.++++ +.+... ...+ ....++ +.++++++.++..+ |+++|+|+||||||++|+.++.++|+.++
T Consensus 97 ~~~~~~vv~~d~~---~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 171 (268)
T 1jjf_A 97 KIKPLIIVTPNTN---AAGPGI-ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFA 171 (268)
T ss_dssp SSCCCEEEEECCC---CCCTTC-SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCS
T ss_pred CCCCEEEEEeCCC---CCCccc-cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhh
Confidence 5999996654 332221 1222 222333 55677888766544 78999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCC-CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 628 CGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK-PILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
++++++|..+..... ..+.... .....+. |+|++||+.|.++| . ++++++.|++.+.+
T Consensus 172 ~~v~~s~~~~~~~~~--------~~~~~~~---------~~~~~~~pp~li~~G~~D~~v~--~--~~~~~~~l~~~g~~ 230 (268)
T 1jjf_A 172 YIGPISAAPNTYPNE--------RLFPDGG---------KAAREKLKLLFIACGTNDSLIG--F--GQRVHEYCVANNIN 230 (268)
T ss_dssp EEEEESCCTTSCCHH--------HHCTTTT---------HHHHHHCSEEEEEEETTCTTHH--H--HHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCCchh--------hhcCcch---------hhhhhcCceEEEEecCCCCCcc--H--HHHHHHHHHHCCCc
Confidence 999999975532100 0000000 0011234 49999999999875 3 67899999999999
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++++++++++|.+.. ....+..+++||.++..
T Consensus 231 ~~~~~~~g~~H~~~~---~~~~~~~~~~~l~~~~~ 262 (268)
T 1jjf_A 231 HVYWLIQGGGHDFNV---WKPGLWNFLQMADEAGL 262 (268)
T ss_dssp CEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCcCHhH---HHHHHHHHHHHHHhcCc
Confidence 999999999998742 44667888999988744
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=177.69 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=154.1
Q ss_pred CceEEEEEEcC--CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 479 LQKEMIKYQRK--DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 479 ~~~e~i~~~~~--~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
+..+.+.++.. ++ ...+.+++|.... +++.|+||++||.+.. ... ...+...|+++||.
T Consensus 23 ~~~~~~~~~~~~~~~-~~~~~l~~p~~~~---~~~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~ 83 (262)
T 1jfr_A 23 YATSQTSVSSLVASG-FGGGTIYYPTSTA---DGTFGAVVISPGFTAY-----------QSS----IAWLGPRLASQGFV 83 (262)
T ss_dssp SCEEEEEECTTTCSS-SCCEEEEEESCCT---TCCEEEEEEECCTTCC-----------GGG----TTTHHHHHHTTTCE
T ss_pred CCccceEecceeccC-CCceeEEecCCCC---CCCCCEEEEeCCcCCC-----------chh----HHHHHHHHHhCCCE
Confidence 45666777654 22 2357788886521 2358999999996411 111 12456678899999
Q ss_pred EEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004475 557 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR----RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 632 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 632 (751)
|+++ +++|+|.+ ......|+..+++++.+ ...++.++|+++||||||.+|+.++.++|+ ++++|++
T Consensus 84 v~~~---d~~g~g~~------~~~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~ 153 (262)
T 1jfr_A 84 VFTI---DTNTTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPL 153 (262)
T ss_dssp EEEE---CCSSTTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEE
T ss_pred EEEe---CCCCCCCC------CchhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEee
Confidence 9994 44566543 23345788899999987 344677899999999999999999999987 8999998
Q ss_pred cCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEE
Q 004475 633 SGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGHGALSRLVL 711 (751)
Q Consensus 633 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~-~~~~~~~l~~~~~~~~~~~ 711 (751)
+|... ...+.++++|+|+++|++|..+| ... ++++++.+. .+.++++++
T Consensus 154 ~p~~~---------------------------~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~l~-~~~~~~~~~ 203 (262)
T 1jfr_A 154 TGWNT---------------------------DKTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLP-GSLDKAYLE 203 (262)
T ss_dssp SCCCS---------------------------CCCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSC-TTSCEEEEE
T ss_pred cccCc---------------------------cccccccCCCEEEEecCccccCC--chhhHHHHHHHhh-cCCCceEEE
Confidence 88532 12345678999999999999998 887 999998884 346789999
Q ss_pred eCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 712 LPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 712 ~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+++++|.+.. +....+.+.+.+||++++...
T Consensus 204 ~~~~~H~~~~-~~~~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 204 LRGASHFTPN-TSDTTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp ETTCCTTGGG-SCCHHHHHHHHHHHHHHHSCC
T ss_pred eCCCCcCCcc-cchHHHHHHHHHHHHHHhcCc
Confidence 9999999863 345788999999999998753
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=175.14 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=126.8
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC-----CchhHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP-----NDRFVEQLVSSA 585 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~-----~~~~~~~~~~d~ 585 (751)
..|+||++||.|.. ...+. .+...|...|+.|++++..+...++.... .........+.+
T Consensus 21 a~~~Vv~lHG~G~~-----------~~~~~----~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~~~~~~~~~~i 85 (210)
T 4h0c_A 21 AKKAVVMLHGRGGT-----------AADII----SLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQPALDSALALV 85 (210)
T ss_dssp CSEEEEEECCTTCC-----------HHHHH----GGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCC-----------HHHHH----HHHHHhCCCCeEEEeecCCCCCccccccCCCcccchHHHHHHHHHH
Confidence 46899999996411 11111 12334456899999976543332222211 111233334445
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcc
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPI 665 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (751)
..+++.+.+. .+|++||+++|+|+||++|+.+++++|++++++|++++........ ...
T Consensus 86 ~~~~~~~~~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~---~~~----------------- 144 (210)
T 4h0c_A 86 GEVVAEIEAQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA---IGN----------------- 144 (210)
T ss_dssp HHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC---GGG-----------------
T ss_pred HHHHHHHHHh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh---hhh-----------------
Confidence 5555555554 4899999999999999999999999999999999999864211100 000
Q ss_pred cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 666 THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 666 ~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
......++|+|++||++|++|| +..++++++.|++.|.++++++||+.+|.+.. +.++.+.+||.
T Consensus 145 ~~~~~~~~Pvl~~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~ 209 (210)
T 4h0c_A 145 YKGDFKQTPVFISTGNPDPHVP--VSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTIL 209 (210)
T ss_dssp CCBCCTTCEEEEEEEESCTTSC--HHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTT
T ss_pred hhhhccCCceEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHc
Confidence 0011235899999999999999 99999999999999999999999999999852 34566777764
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=186.98 Aligned_cols=233 Identities=18% Similarity=0.142 Sum_probs=158.9
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-CeE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFA 556 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 556 (751)
....+.++++..++ .+.+.+|.|.+ ..+.|+||++||+||..++ ...+ ......|+.+ ||.
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~-----~~~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~ 106 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKK-----AAGLPAVLYYHGGGFVFGS--------IETH----DHICRRLSRLSDSV 106 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS-----CSSEEEEEEECCSTTTSCC--------TGGG----HHHHHHHHHHHTCE
T ss_pred cceEEEEEecCCCC-cEEEEEEecCC-----CCCCcEEEEECCCcccCCC--------hhhh----HHHHHHHHHhcCCE
Confidence 35678899987776 89999999975 2247999999998753321 1222 2345567765 999
Q ss_pred EEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEE
Q 004475 557 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCG 629 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~ 629 (751)
|++++ ++|+|.+.. ....+|+..+++++.+.. .+|+++|+|+|||+||++|+.++.++|+ .++++
T Consensus 107 v~~~d---~rg~g~~~~-----~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~ 178 (311)
T 2c7b_A 107 VVSVD---YRLAPEYKF-----PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQ 178 (311)
T ss_dssp EEEEC---CCCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEE
T ss_pred EEEec---CCCCCCCCC-----CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeE
Confidence 99954 456655422 235678889999988752 3677899999999999999999988765 48999
Q ss_pred EEccCCCCCCCCcc----Ccccccccchh--hH----HHH---------HhcCccc-ccCCCCCCEEEEEcCCCCCCCCC
Q 004475 630 IARSGSYNKTLTPF----GFQTEFRTLWE--AT----NVY---------IEMSPIT-HANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 630 v~~~~~~d~~~~~~----~~~~~~~~~~~--~~----~~~---------~~~~~~~-~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
|+.+|..+...... .+.......+. .. ..| ...++.. .+..+ +|+|+++|+.|.+++
T Consensus 179 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~-- 255 (311)
T 2c7b_A 179 VLIYPVVNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGL-PPALVVTAEYDPLRD-- 255 (311)
T ss_dssp EEESCCCCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--
T ss_pred EEECCccCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCC-CcceEEEcCCCCchH--
Confidence 99999877311000 00000000000 00 001 0112221 12333 499999999999853
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc----cccHHHHHHHHHHHHHHHhc
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAA----RENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~fl~~~l~ 741 (751)
....+.+.+...+.+++++++++++|.+.. .+...++.+.+.+||.+++.
T Consensus 256 --~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 256 --EGELYAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp --HHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 456788888889999999999999999863 23456788999999999875
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=201.79 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=169.5
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH---HHHHhCCe
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS---LIFLARRF 555 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G~ 555 (751)
+..+.+.++..+|..+.++++.|.+. +++|+||++||.+... ...+.....+..... ..|+++||
T Consensus 23 ~~~~~v~i~~~DG~~L~~~~~~P~~~-----~~~P~vl~~hgyg~~~-------~~~~~~~~~~~~~~~~~~~~la~~Gy 90 (615)
T 1mpx_A 23 YIKREVMIPMRDGVKLHTVIVLPKGA-----KNAPIVLTRTPYDASG-------RTERLASPHMKDLLSAGDDVFVEGGY 90 (615)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHH-------HTCSSCCSSHHHHSCGGGHHHHHTTC
T ss_pred CEEEEEEEECCCCCEEEEEEEeCCCC-----CCeeEEEEEcCCCCcc-------ccccccccccccccchhHHHHHhCCe
Confidence 45678899989999999999999762 3589999999864210 000000000000111 67899999
Q ss_pred EEEEcCCCCCCCCCCCCCCc-h-------hHH---HHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 556 AVLAGPSIPIIGEGDKLPND-R-------FVE---QLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~-~-------~~~---~~~~d~~~~v~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
+|+.+|.+ |+|.+.... . +.. ...+|+.++++||.++ ++.| .||+++|+||||++++.+++..|
T Consensus 91 ~Vv~~D~R---G~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~ 166 (615)
T 1mpx_A 91 IRVFQDVR---GKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPH 166 (615)
T ss_dssp EEEEEECT---TSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCC
T ss_pred EEEEECCC---CCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCC
Confidence 99995554 544432211 1 111 5689999999999998 7766 59999999999999999999888
Q ss_pred CceeEEEEccCCCCCCC-Ccc---Cccccc----------------------cc------------------------ch
Q 004475 624 HLFCCGIARSGSYNKTL-TPF---GFQTEF----------------------RT------------------------LW 653 (751)
Q Consensus 624 ~~~~~~v~~~~~~d~~~-~~~---~~~~~~----------------------~~------------------------~~ 653 (751)
+.++++|+.+++.+... ..+ +..... .. .|
T Consensus 167 ~~l~a~v~~~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (615)
T 1mpx_A 167 PALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWW 246 (615)
T ss_dssp TTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHH
T ss_pred CceEEEEecCCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHH
Confidence 99999999999988322 111 000000 00 01
Q ss_pred h-------hHHHHHhcCcccccCC--CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC---cEEEEEeCCCCCcCCc
Q 004475 654 E-------ATNVYIEMSPITHANK--IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA---LSRLVLLPFEHHVYAA 721 (751)
Q Consensus 654 ~-------~~~~~~~~~~~~~~~~--~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~H~~~~ 721 (751)
. ..+.|...++..++++ |++|+|++||..|.. + ..++.+++++|++.+. +.++++.|. +|....
T Consensus 247 ~~~~~~~~~d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~--~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~ 322 (615)
T 1mpx_A 247 HKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-D--MWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVN 322 (615)
T ss_dssp HHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-C--SSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGG
T ss_pred HHHHhCCCcChhhhhcChhhhhhccCCCCCEEEeecccCcc-c--cccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCcc
Confidence 1 0133456688888999 999999999999997 7 7889999999998764 489999998 587521
Q ss_pred -----c-------ccH-HHHHHHHHHHHHHHhcCC
Q 004475 722 -----R-------ENV-MHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 722 -----~-------~~~-~~~~~~~~~fl~~~l~~~ 743 (751)
. +.. ....+.+++||+++|+..
T Consensus 323 ~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 323 YDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp SCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred ccccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 0 111 223577899999999854
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=181.07 Aligned_cols=241 Identities=12% Similarity=-0.025 Sum_probs=154.7
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCC--CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCC
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQ--SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARR 554 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~--~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G 554 (751)
+..+.+++.+. .+..+.+.+|+|++.+. .+++++|+||++||++.. ...+... .....+ ...|
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~-----------~~~~~~~--~~~~~~~~~~~ 71 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN-----------HNSWLKR--TNVERLLRGTN 71 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCC-----------TTHHHHH--SCHHHHTTTCC
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC-----------HHHHHhc--cCHHHHHhcCC
Confidence 55677777754 56789999999987521 123458999999997521 1111110 012333 3579
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
++|+.+++. ..++........+.....+|+...++.+..+..+|+++|+++|||+||++|+.++. +|++++++|+++|
T Consensus 72 ~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~ 149 (263)
T 2uz0_A 72 LIVVMPNTS-NGWYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSG 149 (263)
T ss_dssp CEEEECCCT-TSTTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESC
T ss_pred eEEEEECCC-CCccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecC
Confidence 999985542 22222211123344555667766666654423467889999999999999999999 9899999999999
Q ss_pred CCCCCCCccCcccccccc-----hh--hHHHHHhcCcccccCCCC--CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC
Q 004475 635 SYNKTLTPFGFQTEFRTL-----WE--ATNVYIEMSPITHANKIK--KPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705 (751)
Q Consensus 635 ~~d~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~--~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~ 705 (751)
..+............... +. ....+...++...+.+++ +|+|++||++|.+++ .++++++++++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~----~~~~~~~~l~~~g~ 225 (263)
T 2uz0_A 150 ALSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE----ANNLAVKNLKKLGF 225 (263)
T ss_dssp CCCSSSCCGGGTTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH----HHHHHHHHHHHTTC
T ss_pred CcchhhccccccccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhhH----HHHHHHHHHHHCCC
Confidence 876543211000000000 00 001122234444455554 899999999999853 46889999999999
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+++++++++ +|.+.. ....+..+++||.++++.
T Consensus 226 ~~~~~~~~g-~H~~~~---~~~~~~~~~~~l~~~l~~ 258 (263)
T 2uz0_A 226 DVTYSHSAG-THEWYY---WEKQLEVFLTTLPIDFKL 258 (263)
T ss_dssp EEEEEEESC-CSSHHH---HHHHHHHHHHHSSSCCCC
T ss_pred CeEEEECCC-CcCHHH---HHHHHHHHHHHHHhhccc
Confidence 999999999 998642 346778899999988864
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=179.79 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=147.7
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+...++..++..+...+|.|.+ ++.|+||++|||||..++. ..+ ......|+++||.|++++
T Consensus 39 ~~~~i~~~~~~~~~~~~~~p~~------~~~p~vv~~HGgg~~~~~~--------~~~----~~~~~~l~~~G~~v~~~d 100 (262)
T 2pbl_A 39 ARLNLSYGEGDRHKFDLFLPEG------TPVGLFVFVHGGYWMAFDK--------SSW----SHLAVGALSKGWAVAMPS 100 (262)
T ss_dssp EEEEEESSSSTTCEEEEECCSS------SCSEEEEEECCSTTTSCCG--------GGC----GGGGHHHHHTTEEEEEEC
T ss_pred CccccccCCCCCceEEEEccCC------CCCCEEEEEcCcccccCCh--------HHH----HHHHHHHHhCCCEEEEeC
Confidence 3444554456677888898865 2379999999987532211 112 234567788999999955
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeEEEEccCC
Q 004475 562 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCCGIARSGS 635 (751)
Q Consensus 562 ~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~~~ 635 (751)
+ +|.+. .......+|+.++++++..+.. ++|+|+||||||.+|+.++.++ |++++++|+++|.
T Consensus 101 ~---~~~~~-----~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~ 169 (262)
T 2pbl_A 101 Y---ELCPE-----VRISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPL 169 (262)
T ss_dssp C---CCTTT-----SCHHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCC
T ss_pred C---CCCCC-----CChHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCc
Confidence 5 44433 2356778999999999988753 6899999999999999999887 7899999999998
Q ss_pred CCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 636 YNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 636 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
++.......+. ..........+...++...+.++++|+|+++|++|..+| ..+++.+++.+. +++++++++
T Consensus 170 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~-----~~~~~~~~~ 240 (262)
T 2pbl_A 170 SDLRPLLRTSM--NEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEK 240 (262)
T ss_dssp CCCGGGGGSTT--HHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTC
T ss_pred cCchHHHhhhh--hhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCccc--HHHHHHHHHHhC-----CeEEEeCCC
Confidence 76432111000 001111234455667777788899999999999999998 899999998886 689999999
Q ss_pred CCcCCc
Q 004475 716 HHVYAA 721 (751)
Q Consensus 716 ~H~~~~ 721 (751)
+|....
T Consensus 241 ~H~~~~ 246 (262)
T 2pbl_A 241 HHFNVI 246 (262)
T ss_dssp CTTTTT
T ss_pred CcchHH
Confidence 998753
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=177.12 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=159.1
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
.+...+|..+.++++.|.+ .+.|+||++||.+.. .. ....+...|+++||.|++ ++
T Consensus 21 ~~~~~~g~~l~~~~~~~~~------~~~~~vv~~hG~~~~-----------~~----~~~~~~~~l~~~g~~v~~---~d 76 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG------TPKALIFVSHGAGEH-----------SG----RYEELARMLMGLDLLVFA---HD 76 (303)
T ss_dssp EEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCC-----------GG----GGHHHHHHHHHTTEEEEE---EC
T ss_pred eEecCCCeEEEEEEeccCC------CCCeEEEEECCCCch-----------hh----HHHHHHHHHHhCCCcEEE---eC
Confidence 5667789999999998864 236999999997421 11 112456678889999999 55
Q ss_pred CCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 565 IIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 565 ~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+|+|.+... .......++|+.++++++.... +..+++++|||+||.+|+.++.++|++++++|+++|.......
T Consensus 77 ~~G~G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~ 154 (303)
T 3pe6_A 77 HVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 154 (303)
T ss_dssp CTTSTTSCSSTTCCSSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchh
Confidence 6677766432 1234667899999999998763 3568999999999999999999999999999999987542100
Q ss_pred -----------------ccCcccccccch-----hhHHHHHh---------------------cCcccccCCCCCCEEEE
Q 004475 642 -----------------PFGFQTEFRTLW-----EATNVYIE---------------------MSPITHANKIKKPILII 678 (751)
Q Consensus 642 -----------------~~~~~~~~~~~~-----~~~~~~~~---------------------~~~~~~~~~~~~P~li~ 678 (751)
...........+ .....+.. ......+.++++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 234 (303)
T 3pe6_A 155 SATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLL 234 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEE
T ss_pred ccHHHHHHHHHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 000000000000 00000000 01113467789999999
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc--HHHHHHHHHHHHHHHhcC
Q 004475 679 HGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN--VMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 679 ~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~fl~~~l~~ 742 (751)
+|++|..+| ...++.+.+.+.. ..++++++++++|.+..... ..+.+..+++||.+++..
T Consensus 235 ~g~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 235 QGSADRLCD--SKGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp EETTCSSBC--HHHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCCCC--hHHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 999999998 8888888877642 36899999999999764322 557788899999998864
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-19 Score=170.40 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=139.6
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCC----------------CCCCCCCC
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI----------------PIIGEGDK 571 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~----------------~~~g~g~~ 571 (751)
.+.|+||++||.+.. ... .......|++ +||.|++++.+ +..|+|.+
T Consensus 12 ~~~~~vv~~HG~~~~-----------~~~----~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 76 (218)
T 1auo_A 12 PADACVIWLHGLGAD-----------RYD----FMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPA 76 (218)
T ss_dssp CCSEEEEEECCTTCC-----------TTT----THHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSS
T ss_pred CCCcEEEEEecCCCC-----------hhh----HHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcc
Confidence 357999999997411 111 1245667777 99999996642 44455543
Q ss_pred CCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCCCccCccccc
Q 004475 572 LPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTLTPFGFQTEF 649 (751)
Q Consensus 572 ~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~d~~~~~~~~~~~~ 649 (751)
... .....+..+++..+++++.+ ..++.++|+++|||+||.+|+.++. ++|++++++|+++|..... . +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~--~--~~~~- 150 (218)
T 1auo_A 77 RSISLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF--G--DELE- 150 (218)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC--C--TTCC-
T ss_pred cccchHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc--h--hhhh-
Confidence 222 22345667788888888876 4477889999999999999999999 9999999999999976530 0 0000
Q ss_pred ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
.....+++|+|+++|++|..+| +..++++++.+.+.+.++++++++ ++|.+.. +..
T Consensus 151 ----------------~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~ 206 (218)
T 1auo_A 151 ----------------LSASQQRIPALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVLP-----QEI 206 (218)
T ss_dssp ----------------CCHHHHTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCCH-----HHH
T ss_pred ----------------hhhcccCCCEEEEEeCCCceec--HHHHHHHHHHHHhCCCceEEEEec-CCCccCH-----HHH
Confidence 0112457999999999999999 999999999999988899999999 9998753 456
Q ss_pred HHHHHHHHHHhc
Q 004475 730 WETDRWLQKYCL 741 (751)
Q Consensus 730 ~~~~~fl~~~l~ 741 (751)
+.+.+||.++++
T Consensus 207 ~~~~~~l~~~l~ 218 (218)
T 1auo_A 207 HDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 789999998763
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=184.03 Aligned_cols=188 Identities=18% Similarity=0.174 Sum_probs=147.0
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC
Q 004475 495 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 574 (751)
Q Consensus 495 ~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~ 574 (751)
.+.+++|... .+.|+||++||.+.. ...+ ..+...|+++||.|+++ +++|+|.+.
T Consensus 84 ~~~~~~p~~~-----~~~p~vv~~HG~~~~-----------~~~~----~~~~~~la~~G~~vv~~---d~~g~g~s~-- 138 (306)
T 3vis_A 84 GGTIYYPREN-----NTYGAIAISPGYTGT-----------QSSI----AWLGERIASHGFVVIAI---DTNTTLDQP-- 138 (306)
T ss_dssp CEEEEEESSC-----SCEEEEEEECCTTCC-----------HHHH----HHHHHHHHTTTEEEEEE---CCSSTTCCH--
T ss_pred ceEEEeeCCC-----CCCCEEEEeCCCcCC-----------HHHH----HHHHHHHHhCCCEEEEe---cCCCCCCCc--
Confidence 4677788652 258999999996411 1111 24566888999999994 455666541
Q ss_pred chhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccc
Q 004475 575 DRFVEQLVSSAEAAVEEVVRR------GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE 648 (751)
Q Consensus 575 ~~~~~~~~~d~~~~v~~l~~~------~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~ 648 (751)
....+|+..+++++.+. ..+|.++|+++|||+||.+++.++.++|+ ++++|+++|....
T Consensus 139 ----~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~~---------- 203 (306)
T 3vis_A 139 ----DSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHLN---------- 203 (306)
T ss_dssp ----HHHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCSC----------
T ss_pred ----chHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccCc----------
Confidence 23457888999999987 66788999999999999999999999986 8999999885431
Q ss_pred cccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChH-HHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHH
Q 004475 649 FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 727 (751)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 727 (751)
..+.++++|+|+++|++|..+| .. +++.+++.+...+ +++++++++++|.+.. +....
T Consensus 204 -----------------~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~-~~~~~ 262 (306)
T 3vis_A 204 -----------------KSWRDITVPTLIIGAEYDTIAS--VTLHSKPFYNSIPSPT-DKAYLELDGASHFAPN-ITNKT 262 (306)
T ss_dssp -----------------CCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGG-SCCHH
T ss_pred -----------------cccccCCCCEEEEecCCCcccC--cchhHHHHHHHhccCC-CceEEEECCCCccchh-hchhH
Confidence 2245678999999999999998 77 6888988887765 8899999999999863 34478
Q ss_pred HHHHHHHHHHHHhcCC
Q 004475 728 VIWETDRWLQKYCLSN 743 (751)
Q Consensus 728 ~~~~~~~fl~~~l~~~ 743 (751)
+.+.+.+||++++...
T Consensus 263 ~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 263 IGMYSVAWLKRFVDED 278 (306)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHccCc
Confidence 8899999999998753
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=189.54 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=159.4
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.++. ++..+.++++.+. ..+.|+||++||.+. . ...+.......++++||.|+
T Consensus 133 ~~~~~~~i~~-~~~~l~~~~~~~~------~~~~p~vv~~HG~~~-----------~---~~~~~~~~~~~~~~~g~~vi 191 (405)
T 3fnb_A 133 IPLKSIEVPF-EGELLPGYAIISE------DKAQDTLIVVGGGDT-----------S---REDLFYMLGYSGWEHDYNVL 191 (405)
T ss_dssp CCCEEEEEEE-TTEEEEEEEECCS------SSCCCEEEEECCSSC-----------C---HHHHHHHTHHHHHHTTCEEE
T ss_pred CCcEEEEEeE-CCeEEEEEEEcCC------CCCCCEEEEECCCCC-----------C---HHHHHHHHHHHHHhCCcEEE
Confidence 4567788875 5778999988543 223699999999631 0 11111122235668999999
Q ss_pred EcCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 559 AGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+ ++.+|+|.+... ..+..+..+|+..+++++..+. .+|+|+|||+||++|+.++..+| +++++|+.+|..+
T Consensus 192 ~---~D~~G~G~s~~~~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~ 263 (405)
T 3fnb_A 192 M---VDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYD 263 (405)
T ss_dssp E---ECCTTSTTGGGGTCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSC
T ss_pred E---EcCCCCcCCCCCCCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCC
Confidence 9 555677765321 1122244778889999987653 68999999999999999999998 8999999999876
Q ss_pred CCCCc-------cCccc----c---------cccchh---------------hHHHHHhcCcccccCCCCCCEEEEEcCC
Q 004475 638 KTLTP-------FGFQT----E---------FRTLWE---------------ATNVYIEMSPITHANKIKKPILIIHGEV 682 (751)
Q Consensus 638 ~~~~~-------~~~~~----~---------~~~~~~---------------~~~~~~~~~~~~~~~~~~~P~li~~G~~ 682 (751)
..... ...+. . ....|. ....+....+...+.++++|+|+++|++
T Consensus 264 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~ 343 (405)
T 3fnb_A 264 VAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAG 343 (405)
T ss_dssp HHHHHHHHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETT
T ss_pred HHHHHHHhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCC
Confidence 21100 00000 0 000000 0011222333333678899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CccccHHHHHHHHHHHHHHHhcC
Q 004475 683 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 683 D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
|..+| +.++.++++.++..+.+++++++++..|.. ...+....+.+.+.+||+++++.
T Consensus 344 D~~v~--~~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 344 EDSEL--MRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp SCHHH--HHHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred CcCCC--hHHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99998 999999999999988899999996665542 23566788899999999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-17 Score=171.69 Aligned_cols=270 Identities=14% Similarity=0.059 Sum_probs=182.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|++||+.+ ++..... .....+..++|||||++|+++. .....|+++++.+++..+......
T Consensus 11 d~~v~v~d~~~----~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~---------~~d~~i~v~d~~~~~~~~~~~~~~- 74 (391)
T 1l0q_A 11 SDNISVIDVTS----NKVTATI--PVGSNPMGAVISPDGTKVYVAN---------AHSNDVSIIDTATNNVIATVPAGS- 74 (391)
T ss_dssp TTEEEEEETTT----TEEEEEE--ECSSSEEEEEECTTSSEEEEEE---------GGGTEEEEEETTTTEEEEEEECSS-
T ss_pred CCEEEEEECCC----CeEEEEe--ecCCCcceEEECCCCCEEEEEC---------CCCCeEEEEECCCCeEEEEEECCC-
Confidence 45799999988 8776543 2333578899999999997764 344789999998888665544333
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|||++|++.... ...|+++|
T Consensus 75 ----~v~~~~~spdg~~l~~~~~~------------------------------------------------~~~v~v~d 102 (391)
T 1l0q_A 75 ----SPQGVAVSPDGKQVYVTNMA------------------------------------------------SSTLSVID 102 (391)
T ss_dssp ----SEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEE
T ss_pred ----CccceEECCCCCEEEEEECC------------------------------------------------CCEEEEEE
Confidence 36788999999999887321 04788899
Q ss_pred C-CCCcee-cCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+ +++... +..+..+..++|+|||++|+++... ...|++||+.+++........
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~------------- 157 (391)
T 1l0q_A 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG------------- 157 (391)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------
T ss_pred CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEEecC-------------
Confidence 9 564433 3333667899999999999877543 347999999877654432221
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
..+..+.|+|||+. ++++.. ..+.|+++++. ............... +.|+|||+.|+..... .
T Consensus 158 ~~~~~~~~~~dg~~-l~~~~~-----------~~~~v~~~d~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~ 221 (391)
T 1l0q_A 158 RSPKGIAVTPDGTK-VYVANF-----------DSMSISVIDTV---TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD-K 221 (391)
T ss_dssp SSEEEEEECTTSSE-EEEEET-----------TTTEEEEEETT---TTEEEEEEECSSEEEEEEECTTSSEEEEEEEC-S
T ss_pred CCcceEEECCCCCE-EEEEeC-----------CCCEEEEEECC---CCeEEEEEecCCCccceEECCCCCEEEEEecC-c
Confidence 22457899999998 555431 22579999985 333333333444556 8999999998877631 1
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEe
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 400 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 400 (751)
....|+++++.++ +.......... ... ++|+|||+.|++... ....|++||
T Consensus 222 ~~~~v~~~d~~~~--~~~~~~~~~~~-~~~------~~~s~dg~~l~~s~~--------------------~d~~v~v~d 272 (391)
T 1l0q_A 222 YFNTVSMIDTGTN--KITARIPVGPD-PAG------IAVTPDGKKVYVALS--------------------FXNTVSVID 272 (391)
T ss_dssp SCCEEEEEETTTT--EEEEEEECCSS-EEE------EEECTTSSEEEEEET--------------------TTTEEEEEE
T ss_pred CCCcEEEEECCCC--eEEEEEecCCC-ccE------EEEccCCCEEEEEcC--------------------CCCEEEEEE
Confidence 3467888998874 22222222111 111 789999998877651 224789999
Q ss_pred cCCCceeEEee
Q 004475 401 INTGSKERIWE 411 (751)
Q Consensus 401 ~~~g~~~~l~~ 411 (751)
+.+++....+.
T Consensus 273 ~~~~~~~~~~~ 283 (391)
T 1l0q_A 273 TATNTITATMA 283 (391)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 99887765543
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-19 Score=171.30 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=144.2
Q ss_pred EEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC--------------
Q 004475 498 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-------------- 563 (751)
Q Consensus 498 ~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-------------- 563 (751)
++.|+. +.+.|+||++||.+.. ...+ ......|+++||.|++++.+
T Consensus 14 ~~~p~~-----~~~~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 73 (232)
T 1fj2_A 14 AIVPAA-----RKATAAVIFLHGLGDT-----------GHGW----AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73 (232)
T ss_dssp EEECCS-----SCCSEEEEEECCSSSC-----------HHHH----HHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEEC
T ss_pred cccCCC-----CCCCceEEEEecCCCc-----------cchH----HHHHHHHhcCCcEEEecCCCcccccccccccccc
Confidence 456654 2357999999997521 0111 12334455579999996432
Q ss_pred --CCCCCCCCCC-CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 564 --PIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 564 --~~~g~g~~~~-~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
+.+|+..... .........+++.++++++.+ ..+|+++|+++|||+||.+|+.++.++|++++++|+++|..+...
T Consensus 74 w~d~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~ 152 (232)
T 1fj2_A 74 WFDIIGLSPDSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA 152 (232)
T ss_dssp SSCBCCCSTTCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred ccccccCCcccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence 4455522111 223355677888888888877 557778999999999999999999999999999999999754321
Q ss_pred CccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc--EEEEEeCCCCCc
Q 004475 641 TPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL--SRLVLLPFEHHV 718 (751)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~H~ 718 (751)
. .. .....+.++++|+|+++|++|..+| ...++++++.+.+.+.+ ++++++++++|.
T Consensus 153 ~---~~----------------~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~ 211 (232)
T 1fj2_A 153 S---FP----------------QGPIGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHS 211 (232)
T ss_dssp G---SC----------------SSCCCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSS
T ss_pred c---cc----------------ccccccccCCCCEEEEecCCCccCC--HHHHHHHHHHHHHhCCCCceEEEEeCCCCcc
Confidence 0 00 0112345678999999999999998 99999999999887754 999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004475 719 YAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+. .+..+.+.+||.+++..
T Consensus 212 ~~-----~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 212 SC-----QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CC-----HHHHHHHHHHHHHHSCC
T ss_pred cC-----HHHHHHHHHHHHHhcCC
Confidence 73 24558999999999864
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=199.17 Aligned_cols=251 Identities=15% Similarity=0.139 Sum_probs=171.0
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~v 557 (751)
+..+.+.++..+|..|.+++|.|.+. +++|+||++||.+...... .......+.. ..... ..|+++||+|
T Consensus 35 ~~~~~v~i~~~DG~~L~~~l~~P~~~-----~~~PvIl~~hpyg~~~~~~---~~~~~~~~~~-~~~~~~~~la~~GyaV 105 (652)
T 2b9v_A 35 YIKREVMVPMRDGVKLYTVIVIPKNA-----RNAPILLTRTPYNAKGRAN---RVPNALTMRE-VLPQGDDVFVEGGYIR 105 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHHHTC---SSTTCSSHHH-HSCGGGHHHHHTTCEE
T ss_pred cEEEEEEEECCCCcEEEEEEEecCCC-----CCccEEEEECCCCCCcccc---cccccccccc-cccchHHHHHhCCCEE
Confidence 45688899999999999999999762 3589999999854211000 0000000000 00112 7789999999
Q ss_pred EEcCCCCCCCCCCCCCCc-----hhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 558 LAGPSIPIIGEGDKLPND-----RFV---EQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~-----~~~---~~~~~d~~~~v~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
+.+|+++..+++...... .+. ....+|+.++++||.++ +++| .||+++|+||||++++.+++..|+.+++
T Consensus 106 v~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka 184 (652)
T 2b9v_A 106 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKV 184 (652)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEE
T ss_pred EEEecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEE
Confidence 995555443333321111 011 15689999999999998 7777 5999999999999999999988899999
Q ss_pred EEEccCCCCCCC-Ccc---Cccccc----------------------ccc------------------------hhh---
Q 004475 629 GIARSGSYNKTL-TPF---GFQTEF----------------------RTL------------------------WEA--- 655 (751)
Q Consensus 629 ~v~~~~~~d~~~-~~~---~~~~~~----------------------~~~------------------------~~~--- 655 (751)
+|+.+++.|... ..+ +..... ... |..
T Consensus 185 ~v~~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (652)
T 2b9v_A 185 AAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHA 264 (652)
T ss_dssp EEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHH
T ss_pred EEecccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHh
Confidence 999999887532 110 000000 000 000
Q ss_pred ----HHHHHhcCcccccCC--CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--CcEEEEEeCCCCCcCCc-----c
Q 004475 656 ----TNVYIEMSPITHANK--IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--ALSRLVLLPFEHHVYAA-----R 722 (751)
Q Consensus 656 ----~~~~~~~~~~~~~~~--~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~-----~ 722 (751)
.+.|...++..++++ |++|+|++||..|.. + ..++.+++++|+..+ .+.++++.|. +|.... .
T Consensus 265 ~p~~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~--~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~ 340 (652)
T 2b9v_A 265 HPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-D--MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTL 340 (652)
T ss_dssp CCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-C--SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEE
T ss_pred CCCCChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-c--cccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccC
Confidence 123455678888889 999999999999997 6 678899999999988 8889999988 687521 0
Q ss_pred ------cc--HHHHHHHHHHHHHHHhcCC
Q 004475 723 ------EN--VMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 723 ------~~--~~~~~~~~~~fl~~~l~~~ 743 (751)
.. .....+.+++||+++|+..
T Consensus 341 ~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 341 GPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp TTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred CccccccccchhhhhhHHHHHHHHHhCCC
Confidence 11 1233678899999999854
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-20 Score=186.33 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=150.0
Q ss_pred eEEEEEEc-CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 481 KEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~-~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
.+.+++.+ ..+..+.+.+|+|+++. .+++|+||++||++... ..+... ......++++||+|++
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~vv~ 86 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE---NRPLGVIYWLSGLTCTE-----------QNFITK-SGFQRYAAEHQVIVVA 86 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT---CCCEEEEEEECCTTCCS-----------HHHHHH-SCTHHHHHHHTCEEEE
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC---CCCCCEEEEEcCCCCCc-----------cchhhc-ccHHHHHhhCCeEEEE
Confidence 34444444 35678999999998764 33599999999975321 111100 0124455678999999
Q ss_pred cCCCCCC------------CCCCCCC----------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004475 560 GPSIPII------------GEGDKLP----------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 617 (751)
Q Consensus 560 ~~~~~~~------------g~g~~~~----------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~ 617 (751)
++.. .+ |.|.+.. ...+.....+++ +.++.+... +.++|+|+||||||++|+.
T Consensus 87 ~d~~-~rg~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~-~~~~~~l~G~S~GG~~a~~ 161 (283)
T 4b6g_A 87 PDTS-PRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNEL---PRLIEKHFP-TNGKRSIMGHSMGGHGALV 161 (283)
T ss_dssp ECSS-CCSTTSCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHH---HHHHHHHSC-EEEEEEEEEETHHHHHHHH
T ss_pred eccc-cccccccccccccccCCCcccccCccCcccchhhHHHHHHHHH---HHHHHHhCC-CCCCeEEEEEChhHHHHHH
Confidence 6642 11 2121100 001123333433 444444422 3579999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCC--CCCEEEEEcCCCCCCCCChHH-HH
Q 004475 618 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKI--KKPILIIHGEVDDKVGLFPMQ-AE 694 (751)
Q Consensus 618 ~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~li~~G~~D~~vp~~~~~-~~ 694 (751)
++.++|++|+++++++|..+....++...............+...++...+.++ .+|+|++||+.|.+++ ... ++
T Consensus 162 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~ 239 (283)
T 4b6g_A 162 LALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLP--TQLRTE 239 (283)
T ss_dssp HHHHHGGGCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHH--HHTCHH
T ss_pred HHHhCCccceeEEEECCccccccCcchhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCc--chhhHH
Confidence 999999999999999998764322211000000000011122333444433333 4699999999999986 422 78
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+++++|++.+.+++++++|+++|.+.. +...+..+++|+.++|+
T Consensus 240 ~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 240 DFIETCRAANQPVDVRFHKGYDHSYYF---IASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHHHHHHHTCCCEEEEETTCCSSHHH---HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCceEEEeCCCCcCHhH---HHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998643 55677888999988763
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=185.65 Aligned_cols=238 Identities=13% Similarity=0.011 Sum_probs=160.2
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+..+.+.+...++..+.+.+|.|.... .++|+||++|||||..++. .. .........|+++||+|
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~~----~~~p~vv~iHGgg~~~g~~--------~~--~~~~~~~~~la~~g~~v 144 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGVE----GVLPGLVYTHGGGMTILTT--------DN--RVHRRWCTDLAAAGSVV 144 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTCC----SCEEEEEEECCSTTTSSCS--------SS--HHHHHHHHHHHHTTCEE
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCCC----CCCeEEEEEcCCccccCCC--------cc--cchhHHHHHHHhCCCEE
Confidence 3566778888878778999999997621 2589999999987543221 10 01123456778899999
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-----CCCceeEE
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH-----APHLFCCG 629 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~-----~p~~~~~~ 629 (751)
++++++ |.|.+.. ........+|+..+++|+.+.. .+| +|+|+|||+||.+|+.++.. .|++++++
T Consensus 145 v~~d~r---~~gg~~~-~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~ 218 (361)
T 1jkm_A 145 VMVDFR---NAWTAEG-HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 218 (361)
T ss_dssp EEEECC---CSEETTE-ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred EEEecC---CCCCCCC-CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 996665 4322111 1112345688999999998752 234 99999999999999999988 77789999
Q ss_pred EEccCCCCCCCC---------ccCcccccccchhh--H----HHHH---------hcCcc----cccCCCCCCEEEEEcC
Q 004475 630 IARSGSYNKTLT---------PFGFQTEFRTLWEA--T----NVYI---------EMSPI----THANKIKKPILIIHGE 681 (751)
Q Consensus 630 v~~~~~~d~~~~---------~~~~~~~~~~~~~~--~----~~~~---------~~~~~----~~~~~~~~P~li~~G~ 681 (751)
|+++|..+.... ...+.......+.. . ..+. ..++. ..+.++. |+|++||+
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~ 297 (361)
T 1jkm_A 219 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNE 297 (361)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEET
T ss_pred EEECCccccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcC
Confidence 999998775110 00000000000000 0 0010 11222 2234555 99999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC-cc----ccH-HHHHHHHHHHHHHHh
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA-AR----ENV-MHVIWETDRWLQKYC 740 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~-~~----~~~-~~~~~~~~~fl~~~l 740 (751)
+|.++ .++..+++++.+.+.+++++++++++|.+. .. +.. .++.+.+.+||+++.
T Consensus 298 ~D~~~----~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLR----DEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTH----HHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcch----hhHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99985 377889999999999999999999999876 22 333 678889999998764
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=170.82 Aligned_cols=208 Identities=17% Similarity=0.124 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~ 573 (751)
+..+++.|.+ +.|+||++||.+.. ...+. .....|+++||.|++ .+.+|+|.+..
T Consensus 13 ~~~~~~~~~~-------~~~~vv~~hG~~~~-----------~~~~~----~~~~~l~~~G~~v~~---~d~~g~g~s~~ 67 (238)
T 1ufo_A 13 LSVLARIPEA-------PKALLLALHGLQGS-----------KEHIL----ALLPGYAERGFLLLA---FDAPRHGEREG 67 (238)
T ss_dssp EEEEEEEESS-------CCEEEEEECCTTCC-----------HHHHH----HTSTTTGGGTEEEEE---CCCTTSTTSSC
T ss_pred EEEEEEecCC-------CccEEEEECCCccc-----------chHHH----HHHHHHHhCCCEEEE---ecCCCCccCCC
Confidence 5666777764 36999999997521 11111 223355778999999 45556665533
Q ss_pred Cc---h----------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 574 ND---R----------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 574 ~~---~----------~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
.. . ......+|+.++++++.+... .+++++|||+||.+|+.++.++|+.++++++.++......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (238)
T 1ufo_A 68 PPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL 144 (238)
T ss_dssp CCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC
T ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh
Confidence 21 1 245668899999999987653 7899999999999999999999988888888877543221
Q ss_pred CccCcccccccchhhHHHHHhcCcccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHH-hCCC-cEEEEEeCCCCC
Q 004475 641 TPFGFQTEFRTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALK-GHGA-LSRLVLLPFEHH 717 (751)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~-~~~~-~~~~~~~~~~~H 717 (751)
....+ ..+ .....+...++...+.++ ++|+|+++|++|..+| ...++++++.+. ..+. +++++++++++|
T Consensus 145 ~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 145 PQGQV----VED-PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp CTTCC----CCC-HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred hhhhc----cCC-cccchhhcCChhhhhhhccCCcEEEEECCCCCccC--cHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 11110 000 013344555666667777 8999999999999998 999999999998 7776 899999999999
Q ss_pred cCCccccHHHHHHHHHHHHHHHhc
Q 004475 718 VYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 718 ~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+.. +..+.+.+||.+++.
T Consensus 218 ~~~~-----~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 218 TLTP-----LMARVGLAFLEHWLE 236 (238)
T ss_dssp SCCH-----HHHHHHHHHHHHHHH
T ss_pred ccHH-----HHHHHHHHHHHHHHh
Confidence 8753 456788899998875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-18 Score=171.55 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=180.4
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.....|+++++.+++.+++..... .+..++|||||++|++...
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~-------------------------------- 61 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPE-----LFEAPNWSPDGKYLLLNSE-------------------------------- 61 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESS-----CCEEEEECTTSSEEEEEET--------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCc-----ceEeeEECCCCCEEEEEcC--------------------------------
Confidence 456899999999998887765433 3678999999999998732
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-C-CCceecCCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-D-GTAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~-G~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
..|+++++ + ++..++... ..+..++|||||++|++...... ....||.
T Consensus 62 ------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---------~~~~l~~ 114 (297)
T 2ojh_A 62 ------------------GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---------GKSAIYL 114 (297)
T ss_dssp ------------------TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---------SSCEEEE
T ss_pred ------------------CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---------CcceEEE
Confidence 47899999 6 666666543 45668999999999999864321 1357899
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
++.+++..+.+.... .+..+.|+|||+. |+++...+ ....||.++++ ++....
T Consensus 115 ~~~~~~~~~~~~~~~--------------~~~~~~~spdg~~-l~~~~~~~---------~~~~l~~~~~~---~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL--------------PSYWHGWSPDGKS-FTYCGIRD---------QVFDIYSMDID---SGVETR 167 (297)
T ss_dssp EETTCCCCEECCSSS--------------SEEEEEECTTSSE-EEEEEEET---------TEEEEEEEETT---TCCEEE
T ss_pred EECCCCceEEeecCC--------------CccceEECCCCCE-EEEEECCC---------CceEEEEEECC---CCcceE
Confidence 998877666553321 1346799999998 66544221 12367777765 455666
Q ss_pred eEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeee
Q 004475 294 LHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 372 (751)
Q Consensus 294 l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~ 372 (751)
+......+. +.|+|||+.|++.... .....||.++..++ ..+.+..... .... ++|+|||++|++.+.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~-~~~~------~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSR-TGQMQIWRVRVDGS--SVERITDSAY-GDWF------PHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETTSS--CEEECCCCSE-EEEE------EEECTTSSEEEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecC-CCCccEEEECCCCC--CcEEEecCCc-ccCC------eEECCCCCEEEEEEcC
Confidence 666666677 9999999999887643 23568999987763 3444443221 1112 7899999999998843
Q ss_pred cCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC
Q 004475 373 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 447 (751)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 447 (751)
.... .........|++||+++++...+...... ......++|||||+.|++.....
T Consensus 238 ~~~~----------~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 238 ADVF----------DHPRDLDVRVQLMDMDGGNVETLFDLFGG---------QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTCC----------SCCSSEEEEEEEEETTSCSCEEEEEEEES---------TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCC----------cccccCceEEEEEecCCCCceeeeccCCC---------CcccccceECCCCCEEEEEEecc
Confidence 2000 00001234799999998887666542110 11123368999999999886543
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=174.09 Aligned_cols=188 Identities=15% Similarity=0.095 Sum_probs=133.9
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCC---CCCCCCCCCCC--------ch
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI---PIIGEGDKLPN--------DR 576 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~---~~~g~g~~~~~--------~~ 576 (751)
.+.|+||++||.|. +...+. .+...|+. .++.+++++.. ...|.|..... ..
T Consensus 64 ~~~plVI~LHG~G~-----------~~~~~~----~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~ 128 (285)
T 4fhz_A 64 EATSLVVFLHGYGA-----------DGADLL----GLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSET 128 (285)
T ss_dssp CCSEEEEEECCTTB-----------CHHHHH----TTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHH
T ss_pred CCCcEEEEEcCCCC-----------CHHHHH----HHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccc
Confidence 35899999999641 112222 22344544 38888875431 11222222111 00
Q ss_pred h----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccc
Q 004475 577 F----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTL 652 (751)
Q Consensus 577 ~----~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~ 652 (751)
. .....+++...++.+.++..+|++||+++|+|+||.+|+.++.++|+.++++|++++....
T Consensus 129 ~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~-------------- 194 (285)
T 4fhz_A 129 AAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA-------------- 194 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC--------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC--------------
Confidence 0 1223456667777777777799999999999999999999999999999999999985321
Q ss_pred hhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHH
Q 004475 653 WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWET 732 (751)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 732 (751)
++.+. .....++|+|++||+.|++|| +..++++++.|++.|.++++++|++.+|.+.. +.+..+
T Consensus 195 ---~~~~~------~~~~~~~Pvl~~hG~~D~~Vp--~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~~-----~~l~~~ 258 (285)
T 4fhz_A 195 ---PERLA------EEARSKPPVLLVHGDADPVVP--FADMSLAGEALAEAGFTTYGHVMKGTGHGIAP-----DGLSVA 258 (285)
T ss_dssp ---HHHHH------HHCCCCCCEEEEEETTCSSSC--THHHHHHHHHHHHTTCCEEEEEETTCCSSCCH-----HHHHHH
T ss_pred ---chhhh------hhhhhcCcccceeeCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH-----HHHHHH
Confidence 00010 112346899999999999999 99999999999999999999999999999752 557789
Q ss_pred HHHHHHHhcC
Q 004475 733 DRWLQKYCLS 742 (751)
Q Consensus 733 ~~fl~~~l~~ 742 (751)
.+||+++|..
T Consensus 259 ~~fL~~~Lpd 268 (285)
T 4fhz_A 259 LAFLKERLPD 268 (285)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHCcC
Confidence 9999999864
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=190.40 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=152.5
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.++. ++..+.++++.|.+ .++.|+||++||.+.. ...+.......++++||.|+
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~-----~~~~P~vv~~hG~~~~--------------~~~~~~~~~~~l~~~G~~V~ 225 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSL--------------QTDMWRLFRDHLAKHDIAML 225 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCS-----SSCEEEEEEECCTTSC--------------GGGGHHHHHHTTGGGTCEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCC-----CCCCCEEEEECCCCcc--------------HHHHHHHHHHHHHhCCCEEE
Confidence 4578888886 77899999999976 3458999999996411 01111123456678999999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
+ .+++|+|.+...... .+....+..+++++.+...+|.++|+++|||+||++|+.++..+|++++++|+++|..+.
T Consensus 226 ~---~D~~G~G~s~~~~~~-~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~ 301 (415)
T 3mve_A 226 T---VDMPSVGYSSKYPLT-EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301 (415)
T ss_dssp E---ECCTTSGGGTTSCCC-SCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSH
T ss_pred E---ECCCCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCcccc
Confidence 9 455566655322111 112223357788888887788899999999999999999999999999999999997541
Q ss_pred CCCccCc----ccc--------cc-cchhhHH---HHHhcCcccc----cCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 639 TLTPFGF----QTE--------FR-TLWEATN---VYIEMSPITH----ANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 639 ~~~~~~~----~~~--------~~-~~~~~~~---~~~~~~~~~~----~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
......+ ... .. ....... .+...++... +.++++|+|+++|++|.++| ...+..+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp--~~~~~~l~~ 379 (415)
T 3mve_A 302 IFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSP--YSDNQMVAF 379 (415)
T ss_dssp HHHCHHHHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSC--HHHHHHHHH
T ss_pred ccccHHHHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCC--HHHHHHHHH
Confidence 1110000 000 00 0000011 1122222211 35788999999999999998 887776655
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
...+++++++++. +. ..........+.+||.+++.
T Consensus 380 ----~~~~~~l~~i~g~-~~---h~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 ----FSTYGKAKKISSK-TI---TQGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp ----TBTTCEEEEECCC-SH---HHHHHHHHHHHHHHHHHHHT
T ss_pred ----hCCCceEEEecCC-Cc---ccchHHHHHHHHHHHHHHhc
Confidence 4567899999983 21 12456788899999999875
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=164.89 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=131.7
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC----------CCCCCCCCCCC---chh
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI----------PIIGEGDKLPN---DRF 577 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~----------~~~g~g~~~~~---~~~ 577 (751)
+.| ||++||.|.. ...+ ..+...++ .+|.|++++.. +..|+|..... ...
T Consensus 16 ~~p-vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~ 78 (209)
T 3og9_A 16 LAP-LLLLHSTGGD-----------EHQL----VEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLES 78 (209)
T ss_dssp SCC-EEEECCTTCC-----------TTTT----HHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHH
T ss_pred CCC-EEEEeCCCCC-----------HHHH----HHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHH
Confidence 478 9999996421 1111 13334444 88999986632 13333332111 122
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHH
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATN 657 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 657 (751)
.....+++.+.++.+.++..+|+++|+++||||||.+|+.++.++|++++++|+++|.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~---------------- 142 (209)
T 3og9_A 79 LDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE---------------- 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc----------------
Confidence 3445666777777777766688899999999999999999999999999999999997542111
Q ss_pred HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 658 ~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
......++|+|++||++|.++| +..++++++.|++.+.++++++++ ++|.+. .+....+.+||.
T Consensus 143 --------~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~ 206 (209)
T 3og9_A 143 --------QTVQLDDKHVFLSYAPNDMIVP--QKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLT 206 (209)
T ss_dssp --------CCCCCTTCEEEEEECTTCSSSC--HHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHH
T ss_pred --------ccccccCCCEEEEcCCCCCccC--HHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHH
Confidence 0123467999999999999999 999999999999999999999998 699884 255788899998
Q ss_pred HH
Q 004475 738 KY 739 (751)
Q Consensus 738 ~~ 739 (751)
++
T Consensus 207 ~~ 208 (209)
T 3og9_A 207 ET 208 (209)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=180.72 Aligned_cols=239 Identities=14% Similarity=0.108 Sum_probs=158.8
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCC--CchHHHHHHhCCeE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARRFA 556 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~ 556 (751)
+..+.+.+...+|..+.++.+.|........++.|+||++||.+... ..|... ...++..|+++||.
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~-----------~~~~~~~~~~~~a~~l~~~G~~ 93 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA-----------TNWISNLPNNSLAFILADAGYD 93 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG-----------GGGSSSCTTTCHHHHHHHTTCE
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCch-----------hhhhcCCCcccHHHHHHHCCCC
Confidence 45788888888998899888876542111112478999999975221 122221 12345578889999
Q ss_pred EEEcCCCCCCCCCCCCCC-----------chhHHHHHH-HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 557 VLAGPSIPIIGEGDKLPN-----------DRFVEQLVS-SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 557 v~~~~~~~~~g~g~~~~~-----------~~~~~~~~~-d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
|++ .+.+|+|.+... .....+..+ |+.++++++.+.. +.++++++||||||.+|+.++.++|+
T Consensus 94 vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~ 168 (377)
T 1k8q_A 94 VWL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPK 168 (377)
T ss_dssp EEE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHH
T ss_pred EEE---ecCCCCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCch
Confidence 999 556677766431 223456677 9999999987653 34689999999999999999999998
Q ss_pred ---ceeEEEEccCCCCCCCCccCc---------------------cccc-c-----c-----------------------
Q 004475 625 ---LFCCGIARSGSYNKTLTPFGF---------------------QTEF-R-----T----------------------- 651 (751)
Q Consensus 625 ---~~~~~v~~~~~~d~~~~~~~~---------------------~~~~-~-----~----------------------- 651 (751)
+++++|+++|........... +... . .
T Consensus 169 ~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (377)
T 1k8q_A 169 LAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDT 248 (377)
T ss_dssp HHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCG
T ss_pred hhhhhhEEEEeCCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCc
Confidence 899999999875432110000 0000 0 0
Q ss_pred -ch--hhHHHHH-------------------------hc----------------CcccccCCCCCCEEEEEcCCCCCCC
Q 004475 652 -LW--EATNVYI-------------------------EM----------------SPITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 652 -~~--~~~~~~~-------------------------~~----------------~~~~~~~~~~~P~li~~G~~D~~vp 687 (751)
.+ .....+. .. .+...+.++++|+|+++|++|.++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 328 (377)
T 1k8q_A 249 MNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLAD 328 (377)
T ss_dssp GGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSC
T ss_pred ccCCHHHHHHHhccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccC
Confidence 00 0000000 00 0122367789999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc--cccHHHHHHHHHHHHHH
Q 004475 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA--RENVMHVIWETDRWLQK 738 (751)
Q Consensus 688 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~fl~~ 738 (751)
+..++.+++.+... .+++++++++|.... .+....+.+.+.+||++
T Consensus 329 --~~~~~~~~~~~~~~---~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~ 376 (377)
T 1k8q_A 329 --PHDVDLLLSKLPNL---IYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp --HHHHHHHHTTCTTE---EEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred --HHHHHHHHHhCcCc---ccEEecCCCCceEEEecCCcHHHHHHHHHHHhcc
Confidence 88887777665422 248999999998753 35677888999999975
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=173.29 Aligned_cols=227 Identities=12% Similarity=0.085 Sum_probs=153.1
Q ss_pred ceEEEEE-EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKY-QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~-~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+.+.+.+ ...+|..+.+..+.+.+ .+.|+||++||.+.. ...+. .......++++||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~~vv~~HG~~~~-----------~~~~~--~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ------DERPTCIWLGGYRSD-----------MTGTK--ALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS------TTSCEEEEECCTTCC-----------TTSHH--HHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC------CCCCeEEEECCCccc-----------cccch--HHHHHHHHHhCCCcEE
Confidence 3455555 44578888887776653 126899999996411 01110 1123456668899999
Q ss_pred EcCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CC---CceeEEE
Q 004475 559 AGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---AP---HLFCCGI 630 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~~~v 630 (751)
+ .+.+|+|.+... .....+..+|+.++++++. ..+++++|||+||.+|+.++.+ +| ++++++|
T Consensus 71 ~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~i 141 (270)
T 3llc_A 71 R---FDYSGHGASGGAFRDGTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMV 141 (270)
T ss_dssp E---ECCTTSTTCCSCGGGCCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEE
T ss_pred E---eccccCCCCCCccccccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeE
Confidence 9 555677766443 2345677888888888873 4689999999999999999999 99 8999999
Q ss_pred EccCCCCCCCCc-cC-ccc---------------------ccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCC
Q 004475 631 ARSGSYNKTLTP-FG-FQT---------------------EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 631 ~~~~~~d~~~~~-~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp 687 (751)
+.+|..+..... +. +.. ....................+.++++|+|+++|++|..+|
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~ 221 (270)
T 3llc_A 142 LIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVP 221 (270)
T ss_dssp EESCCTTHHHHTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSC
T ss_pred EecCcccchhhhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCC
Confidence 999975421100 00 000 0000001112233334455677889999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 688 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
...++.+++.+.. .+++++++++++|.+...+....+.+.+.+||++
T Consensus 222 --~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 222 --YQHALKLVEHLPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp --HHHHHHHHHTSCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHhcCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 8888888876643 3589999999999876556666777778888764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=196.69 Aligned_cols=291 Identities=13% Similarity=0.077 Sum_probs=185.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCCccccc---------ceeec--CCCCe-EEEEEeecccccccCCceeEEEEEcC--C
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKIN---------FVSWS--PDGKR-IAFSVRVDEEDNVSSCKLRVWIADAE--T 71 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~---------~p~~S--PDG~~-iaf~~~~~~~~~~~~~~~~l~i~~~~--~ 71 (751)
.||++ ..+ |+.++|+..+ ..+. .++|| |||++ |||+.. ...+||+++++ +
T Consensus 50 ~l~~~-~~~----~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~---------~~~~l~~~~~~~~g 113 (662)
T 3azo_A 50 TLVRR-RAD----GAEESALPAP--WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF---------GDQRLYAFEPDAPG 113 (662)
T ss_dssp EEEEE-CTT----SCEEESSCTT--CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT---------TTCCEEEECTTSTT
T ss_pred EEEEE-CCC----CCcceeCCCC--ccccccccccCCccceeeeecCCCeEEEEEEC---------CCCeEEEEcCCCCC
Confidence 45555 444 7888887432 2233 56676 99999 999752 25789999998 6
Q ss_pred -CCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhh
Q 004475 72 -GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (751)
Q Consensus 72 -g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (751)
++.++|+..........+..++|||||++|+|.+.+.....+
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~------------------------------------- 156 (662)
T 3azo_A 114 GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGP------------------------------------- 156 (662)
T ss_dssp CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSST-------------------------------------
T ss_pred CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCC-------------------------------------
Confidence 889999874311001135688999999999998653111000
Q ss_pred hhhheeeEEEEEcC-C------CCceecC-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-Cc-
Q 004475 151 FDYYTTAQLVLGSL-D------GTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GK- 219 (751)
Q Consensus 151 ~~~~~~~~l~~~~~-~------G~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~- 219 (751)
.....+||++++ + |+.++++ .. ..+..++|||||++|++.+...+. ......+|++++++ ++
T Consensus 157 --~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~-----~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 157 --SDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR-----MPWEGTELKTARVTEDGR 229 (662)
T ss_dssp --TCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC-----CTTTCEEEEEEEECTTSC
T ss_pred --CCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC-----CCCCCcEEEEEEECCCCc
Confidence 002368999999 5 6777888 65 667789999999999998765321 01113689999998 46
Q ss_pred --eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee
Q 004475 220 --LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (751)
Q Consensus 220 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (751)
+.+++.... ...+..+.|||||+ +++++..+ ...+||+++++ ++..+.++..
T Consensus 230 ~~~~~~l~~~~------------~~~~~~~~~spdg~--l~~~~~~~---------~~~~l~~~~~~---~~~~~~l~~~ 283 (662)
T 3azo_A 230 FADTRTLLGGP------------EEAIAQAEWAPDGS--LIVATDRT---------GWWNLHRVDPA---TGAATQLCRR 283 (662)
T ss_dssp EEEEEEEEEET------------TBCEEEEEECTTSC--EEEEECTT---------SSCEEEEECTT---TCCEEESSCC
T ss_pred ccccEEeCCCC------------CceEcceEECCCCe--EEEEECCC---------CCeEEEEEECC---CCceeecccc
Confidence 555554321 12245789999999 44544221 12379999875 4555555544
Q ss_pred ceeE---------E-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEE
Q 004475 298 DLRF---------S-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 367 (751)
Q Consensus 298 ~~~~---------~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~ 367 (751)
.... . ++|+||++.++ .... ...+||.++++++ ..+.++... ..+. ..|++||+.++
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~-~~~~--~~~~l~~~d~~~~--~~~~l~~~~-~~~~-------~~~s~~~~~~~ 350 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAV-VHGK--GAAVLGILDPESG--ELVDAAGPW-TEWA-------ATLTVSGTRAV 350 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEE-EEBS--SSCEEEEEETTTT--EEEECCSSC-CEEE-------EEEEEETTEEE
T ss_pred cccccCccccccCceEeEeCCCEEEE-EEEc--CccEEEEEECCCC--cEEEecCCC-CeEE-------EEEecCCCEEE
Confidence 3332 3 56677877544 4433 5578999999874 345554321 1111 22388888888
Q ss_pred EeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 368 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
+..... .....|+++|+++++.+.++..
T Consensus 351 ~~~~~~-----------------~~~~~i~~~d~~~g~~~~l~~~ 378 (662)
T 3azo_A 351 GVAASP-----------------RTAYEVVELDTVTGRARTIGAR 378 (662)
T ss_dssp EEEEET-----------------TEEEEEEEEETTTCCEEEEESC
T ss_pred EEEcCC-----------------CCCCEEEEEECCCCceEEeecC
Confidence 877331 1234799999999988777654
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-18 Score=163.85 Aligned_cols=185 Identities=17% Similarity=0.191 Sum_probs=138.1
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCC----------------CCCCCCCC
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI----------------PIIGEGDK 571 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~----------------~~~g~g~~ 571 (751)
.+.|+||++||.+.. ...+ ......|++ +||.|++++.+ +.+|+|.+
T Consensus 22 ~~~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~ 86 (226)
T 3cn9_A 22 NADACIIWLHGLGAD-----------RTDF----KPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA 86 (226)
T ss_dssp TCCEEEEEECCTTCC-----------GGGG----HHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST
T ss_pred CCCCEEEEEecCCCC-----------hHHH----HHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc
Confidence 357999999997521 1111 245567777 99999996643 34466543
Q ss_pred CCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCCCccCccccc
Q 004475 572 LPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTLTPFGFQTEF 649 (751)
Q Consensus 572 ~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~d~~~~~~~~~~~~ 649 (751)
... .....+..+++..+++.+.+ ..++.++|+++|||+||.+|+.++. ++|++++++|+++|..+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------- 157 (226)
T 3cn9_A 87 RAIDEDQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------- 157 (226)
T ss_dssp TCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG--------
T ss_pred ccccchhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh--------
Confidence 222 22345667777788887766 3467789999999999999999999 999999999999997542110
Q ss_pred ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
+ +. ...++++|+|+++|+.|..+| +..++++++.+...+.++++++++ ++|.+.. +..
T Consensus 158 ---~-------~~----~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~ 215 (226)
T 3cn9_A 158 ---L-------AL----DERHKRIPVLHLHGSQDDVVD--PALGRAAHDALQAQGVEVGWHDYP-MGHEVSL-----EEI 215 (226)
T ss_dssp ---C-------CC----CTGGGGCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEES-CCSSCCH-----HHH
T ss_pred ---h-------hh----cccccCCCEEEEecCCCCccC--HHHHHHHHHHHHHcCCceeEEEec-CCCCcch-----hhH
Confidence 0 00 113467999999999999999 999999999999988899999999 9998742 456
Q ss_pred HHHHHHHHHHh
Q 004475 730 WETDRWLQKYC 740 (751)
Q Consensus 730 ~~~~~fl~~~l 740 (751)
+.+.+||.+++
T Consensus 216 ~~i~~~l~~~l 226 (226)
T 3cn9_A 216 HDIGAWLRKRL 226 (226)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 78999998764
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=179.70 Aligned_cols=226 Identities=17% Similarity=0.084 Sum_probs=153.4
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~ 558 (751)
..+.+.++..++ .+.+.+| +. .++.|+||++||+||..++ ...+ ...+..|+ ..||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~------~~~~p~vv~~HGgg~~~g~--------~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ------KPDSPVLVYYHGGGFVICS--------IESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES------SSSEEEEEEECCSTTTSCC--------TGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC------CCCceEEEEECCcccccCC--------hhHh----HHHHHHHHHHhCCEEE
Confidence 578888887776 7899988 42 2347999999999764322 1222 23456677 5799999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEE
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIA 631 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~ 631 (751)
++ +++|+|++.. ....+|+.++++|+.+. ..+|+++|+|+|||+||++|+.++.+.|++ ++++|+
T Consensus 115 ~~---dyrg~g~~~~-----p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 186 (311)
T 1jji_A 115 SV---DYRLAPEHKF-----PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EE---ECCCTTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Ee---cCCCCCCCCC-----CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 94 4556666532 23467788888888775 246778999999999999999999887665 999999
Q ss_pred ccCCCCCCCCccCcccc-cccc-hhh--H----HHH---------HhcCccc-ccCCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 632 RSGSYNKTLTPFGFQTE-FRTL-WEA--T----NVY---------IEMSPIT-HANKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~-~~~~-~~~--~----~~~---------~~~~~~~-~~~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
++|..+.......+... .... +.. . ..| ...+++. .+..+ +|+|+++|+.|.++ ..+
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~----~~~ 261 (311)
T 1jji_A 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR----DEG 261 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH----HHH
T ss_pred eCCccCCCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch----HHH
Confidence 99987743211000000 0000 000 0 001 0112222 12222 69999999999984 467
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQK 738 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~ 738 (751)
..+.++|.+.+.+++++++++++|.+... +....+++.+.+||.+
T Consensus 262 ~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 262 EVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999988643 3346778888888864
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=170.78 Aligned_cols=203 Identities=16% Similarity=0.112 Sum_probs=144.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---h-hHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---R-FVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~-~~~~~~~d~~~ 587 (751)
.|+||++||.+. .... ...+...|+++||.|++ .+.+|+|.+.... . ......+|+.+
T Consensus 22 ~~~vv~~HG~~~-----------~~~~----~~~~~~~l~~~G~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~d~~~ 83 (251)
T 3dkr_A 22 DTGVVLLHAYTG-----------SPND----MNFMARALQRSGYGVYV---PLFSGHGTVEPLDILTKGNPDIWWAESSA 83 (251)
T ss_dssp SEEEEEECCTTC-----------CGGG----GHHHHHHHHHTTCEEEE---CCCTTCSSSCTHHHHHHCCHHHHHHHHHH
T ss_pred CceEEEeCCCCC-----------CHHH----HHHHHHHHHHCCCEEEe---cCCCCCCCCChhhhcCcccHHHHHHHHHH
Confidence 588999999641 1111 13566788889999999 5666777763321 1 34556789999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccc------------ccch--
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF------------RTLW-- 653 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~------------~~~~-- 653 (751)
+++++..+ ..+++++|||+||.+|+.++.++|+.++++++.+|............... ...+
T Consensus 84 ~i~~l~~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 3dkr_A 84 AVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQIL 159 (251)
T ss_dssp HHHHHHTT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHH
Confidence 99999876 46999999999999999999999999999999988765321110000000 0000
Q ss_pred ----hhHHHHHhc--CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHH
Q 004475 654 ----EATNVYIEM--SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 727 (751)
Q Consensus 654 ----~~~~~~~~~--~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 727 (751)
.....+... .....+.++++|+|+++|++|..+| +..+..+++.+... .+++++++++++|.+.......+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~ 236 (251)
T 3dkr_A 160 AYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVD--GRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHA 236 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBC--TTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccC--hHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhH
Confidence 000000000 1233467789999999999999999 89999998888764 57899999999999875555888
Q ss_pred HHHHHHHHHHHH
Q 004475 728 VIWETDRWLQKY 739 (751)
Q Consensus 728 ~~~~~~~fl~~~ 739 (751)
+.+.+.+||++.
T Consensus 237 ~~~~i~~fl~~~ 248 (251)
T 3dkr_A 237 LEEDVIAFMQQE 248 (251)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999999865
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=166.55 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=134.1
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-----CeEEEEcCCC----------------CCCCCC
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-----RFAVLAGPSI----------------PIIGEG 569 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----G~~v~~~~~~----------------~~~g~g 569 (751)
+.|+||++||.|.. ...+. .+...++.+ ||.|++++.. +..|.+
T Consensus 22 ~~p~vv~lHG~g~~-----------~~~~~----~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 86 (239)
T 3u0v_A 22 HSASLIFLHGSGDS-----------GQGLR----MWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKIT 86 (239)
T ss_dssp CCEEEEEECCTTCC-----------HHHHH----HHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSS
T ss_pred CCcEEEEEecCCCc-----------hhhHH----HHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCC
Confidence 57999999996421 01111 234455544 7888885541 112222
Q ss_pred CCCCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccc
Q 004475 570 DKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE 648 (751)
Q Consensus 570 ~~~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~ 648 (751)
..... .....+..+++..+++.+.+ ..++.++|+|+||||||.+|+.++.++|++++++|+++|..+.....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~------ 159 (239)
T 3u0v_A 87 NDCPEHLESIDVMCQVLTDLIDEEVK-SGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAV------ 159 (239)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHH------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHH-hCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHH------
Confidence 22111 12344556666677666654 34788999999999999999999999999999999999976532110
Q ss_pred cccchhhHHHHHhcCcccccCCCCCC-EEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHH
Q 004475 649 FRTLWEATNVYIEMSPITHANKIKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 727 (751)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~P-~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 727 (751)
...+. .....+| +|++||++|.++| ...++++++.+++.+.+++++++++++|.+. .+
T Consensus 160 -------~~~~~-------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~ 218 (239)
T 3u0v_A 160 -------YQALQ-------KSNGVLPELFQCHGTADELVL--HSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KT 218 (239)
T ss_dssp -------HHHHH-------HCCSCCCCEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HH
T ss_pred -------HHHHH-------hhccCCCCEEEEeeCCCCccC--HHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HH
Confidence 00000 1234566 9999999999999 9999999999999999999999999999985 36
Q ss_pred HHHHHHHHHHHHhcCC
Q 004475 728 VIWETDRWLQKYCLSN 743 (751)
Q Consensus 728 ~~~~~~~fl~~~l~~~ 743 (751)
..+.+.+||.+++...
T Consensus 219 ~~~~~~~~l~~~l~~~ 234 (239)
T 3u0v_A 219 ELDILKLWILTKLPGE 234 (239)
T ss_dssp HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhCCCc
Confidence 6888999999998653
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=194.75 Aligned_cols=245 Identities=20% Similarity=0.230 Sum_probs=163.8
Q ss_pred EcCCCce--EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCccc-----CCcc------------------------cC-
Q 004475 487 QRKDGVP--LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA-----AGQV------------------------RG- 534 (751)
Q Consensus 487 ~~~~~~~--i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~------------------------~~- 534 (751)
+..+|.+ +.+.+|+|.+ .+++|+||..||.+.+.... ...+ .+
T Consensus 179 ~~~DG~~d~L~a~l~~P~~-----~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 253 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAK 253 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC-----CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccc
Confidence 3568888 9999999986 24699999998865331110 0000 00
Q ss_pred -------CCCccCC-CCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcC---------
Q 004475 535 -------SPNEFSG-MTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRG--------- 596 (751)
Q Consensus 535 -------~~~~~~~-~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~~l~~~~--------- 596 (751)
....+.. ........|+++||+|+. .+.+|+|.+.... .+.....+|+.++++||..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~---~D~RG~G~S~G~~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 254 ELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIY---VAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEE---ECCTTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccchhccccccccchHHHHHHCCCEEEE---ECCCcCCCCCCcCCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 0001100 012345788999999999 5566776664322 223367899999999998431
Q ss_pred -----CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---------CccCccccc---------ccch
Q 004475 597 -----VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------TPFGFQTEF---------RTLW 653 (751)
Q Consensus 597 -----~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---------~~~~~~~~~---------~~~~ 653 (751)
..+..||+++|+||||++++.+|+.+|+.++++|+.+|+.++.. ...++.... ...+
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~~ 410 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 410 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhhc
Confidence 13456999999999999999999999999999999998764110 000111000 0000
Q ss_pred h----------------------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC
Q 004475 654 E----------------------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705 (751)
Q Consensus 654 ~----------------------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~ 705 (751)
. ..+.|...++...+++|++|+|++||..|..+| +.++.+++++++. +.
T Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp--~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 411 DGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-GH 487 (763)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-TC
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCC--hHHHHHHHHhhcc-CC
Confidence 0 001233455667888999999999999999998 8999999999987 66
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+.++++ ++++|..........+.+.+.+||+++|+..
T Consensus 488 ~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 488 AKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLLDR 524 (763)
T ss_dssp CEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhcCC
Confidence 666665 4668986432223356889999999999854
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=159.89 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=138.6
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCch--HHHHHHhCCeEEE
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT--SSLIFLARRFAVL 558 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~v~ 558 (751)
.+...+. .++.++.+++|.|.+ +.|+||++||.+.. ...+ .. ....|+++||.|+
T Consensus 4 ~~~~~~~-~~g~~l~~~~~~~~~-------~~~~vv~~hG~~~~-----------~~~~----~~~~~~~~l~~~G~~v~ 60 (207)
T 3bdi_A 4 LQEEFID-VNGTRVFQRKMVTDS-------NRRSIALFHGYSFT-----------SMDW----DKADLFNNYSKIGYNVY 60 (207)
T ss_dssp CEEEEEE-ETTEEEEEEEECCTT-------CCEEEEEECCTTCC-----------GGGG----GGGTHHHHHHTTTEEEE
T ss_pred ceeEEEe-eCCcEEEEEEEeccC-------CCCeEEEECCCCCC-----------cccc----chHHHHHHHHhCCCeEE
Confidence 3444444 478899999999875 26899999997521 1112 23 5678889999999
Q ss_pred EcCCCCCCCCCCC---CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~---~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
++ +.+|+|.+ ....... ...++..+.+..+.+. ++.++|+++|||+||.+|+.++.++|++++++++++|.
T Consensus 61 ~~---d~~g~g~s~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~ 134 (207)
T 3bdi_A 61 AP---DYPGFGRSASSEKYGIDR-GDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPA 134 (207)
T ss_dssp EE---CCTTSTTSCCCTTTCCTT-CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred EE---cCCcccccCcccCCCCCc-chHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCc
Confidence 94 45566655 3221110 0123333333333333 23468999999999999999999999999999999986
Q ss_pred CCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 636 YNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 636 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
... .+ ...+.++++|+|+++|++|..+| ...++.+.+.+ .++++++++++
T Consensus 135 ~~~---~~---------------------~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~ 184 (207)
T 3bdi_A 135 WVE---SL---------------------KGDMKKIRQKTLLVWGSKDHVVP--IALSKEYASII----SGSRLEIVEGS 184 (207)
T ss_dssp SCG---GG---------------------HHHHTTCCSCEEEEEETTCTTTT--HHHHHHHHHHS----TTCEEEEETTC
T ss_pred ccc---ch---------------------hHHHhhccCCEEEEEECCCCccc--hHHHHHHHHhc----CCceEEEeCCC
Confidence 211 00 12345678999999999999998 88888887766 35689999999
Q ss_pred CCcCCccccHHHHHHHHHHHHHH
Q 004475 716 HHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+|.+. .+....+.+.+.+||++
T Consensus 185 ~H~~~-~~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 185 GHPVY-IEKPEEFVRITVDFLRN 206 (207)
T ss_dssp CSCHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCcc-ccCHHHHHHHHHHHHhh
Confidence 99875 34466778888888864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-16 Score=165.92 Aligned_cols=275 Identities=8% Similarity=-0.015 Sum_probs=175.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
....++|||||++|++...... .......|+++|+++++......... ....++|+|||++|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~---- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNTTQTLWFGNTV---- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEESS-----CCCSEEEETTTTEEEEEETT----
T ss_pred CccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEecCC-----CcceEEECCCCCEEEEEecC----
Confidence 4677899999999977542100 00125799999999887655433222 24578999999988877431
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC--c--------eEEe
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP--A--------VYTA 179 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~--~--------~~~~ 179 (751)
...|+++|+ +|+. ..+..+ . ....
T Consensus 110 --------------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 110 --------------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp --------------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred --------------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence 147888888 6643 333221 1 2567
Q ss_pred eeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
++|||||++|++..... ...|++||+++++......... ..+..++|+|||++ +++
T Consensus 146 ~~~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~-l~~ 201 (353)
T 3vgz_A 146 LVADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKR-LYT 201 (353)
T ss_dssp EEEETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTE-EEE
T ss_pred EEECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCE-EEE
Confidence 99999999998875321 3469999998776554322111 12347899999998 666
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEe----eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK----LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~----~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.. ..+.|+++++. .+.. ..+.. ...... +.|+|||+.|+++. .....|+++++.++
T Consensus 202 ~~------------~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 202 TN------------ADGELITIDTA---DNKILSRKKLLDDGKEHFFINISLDTARQRAFITD---SKAAEVLVVDTRNG 263 (353)
T ss_dssp EC------------TTSEEEEEETT---TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE---SSSSEEEEEETTTC
T ss_pred Ec------------CCCeEEEEECC---CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe---CCCCEEEEEECCCC
Confidence 43 13578888875 2222 22222 122344 79999999887655 22357999999775
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
+.......... ..++|+|||++|++... ....|.+||+.+++........
T Consensus 264 --~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~--------------------~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 264 --NILAKVAAPES--------LAVLFNPARNEAYVTHR--------------------QAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp --CEEEEEECSSC--------CCEEEETTTTEEEEEET--------------------TTTEEEEEETTTTEEEEEEECC
T ss_pred --cEEEEEEcCCC--------ceEEECCCCCEEEEEEC--------------------CCCeEEEEECCCCeEEEEEecC
Confidence 22222221111 12789999998877662 2247899999988765554432
Q ss_pred chhhhhceeeeecCCcceeeccCCCEEEEEEec
Q 004475 414 REKYFETAVALVFGQGEEDINLNQLKILTSKES 446 (751)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 446 (751)
.. + ..++|+|||+.|+++...
T Consensus 314 ~~-----~-------~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 TH-----P-------NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SE-----E-------EEEEECTTSCEEEEEEEC
T ss_pred CC-----C-------CeEEEcCCCCEEEEEEcc
Confidence 11 1 236899999988887765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=173.76 Aligned_cols=294 Identities=14% Similarity=0.181 Sum_probs=172.8
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
+..+||++++.+ |+.++| ..+..|+|||||++|||++... ..+..+||++++++|+.++++....
T Consensus 41 ~~~~l~~~d~~~----~~~~~l------~~~~~~~~SpDg~~la~~~~~~-----~~~~~~l~~~~~~~g~~~~l~~~~~ 105 (347)
T 2gop_A 41 YENTIVIENLKN----NARRFI------ENATMPRISPDGKKIAFMRANE-----EKKVSEIWVADLETLSSKKILEAKN 105 (347)
T ss_dssp EEEEEEEEETTT----CCEEEE------ESCEEEEECTTSSEEEEEEEET-----TTTEEEEEEEETTTTEEEEEEEESE
T ss_pred ccceEEEEeCCC----CceEEc------ccCCCeEECCCCCEEEEEEecc-----CCCcceEEEEECCCCceEEEEcCCC
Confidence 456899999999 888777 2467899999999999987521 1256789999999999999875432
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
+..++|||||+.|+|.+....... .....+...+..++..+......+||++
T Consensus 106 ------~~~~~wspdg~~l~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 106 ------IRSLEWNEDSRKLLIVGFKRREDE----------------------DFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp ------EEEEEECTTSSEEEEEEECCCC-------------------------------CCCC---------CEEEEEEE
T ss_pred ------ccceeECCCCCEEEEEEccCCCcC----------------------CcEEEcccceeecCcccccCccceEEEE
Confidence 567899999999999865311000 0000111122222222222234689999
Q ss_pred cC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCC-ceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARF-SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++ +|+. ++++.. .+..+.||||| |+|........ .... ..+||+++ +++.++++.. ..
T Consensus 158 d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~----~~~~~~~~l~~~d--~~~~~~l~~~-~~--------- 218 (347)
T 2gop_A 158 DTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREII----PQYFKFWDIYIWE--DGKEEKMFEK-VS--------- 218 (347)
T ss_dssp ETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSS----CCSSCCEEEEEEE--TTEEEEEEEE-ES---------
T ss_pred ECCCCeEEeeecCC-CcccccCCCCe--EEEEEeccccc----ccccccccEEEeC--CCceEEeccC-cc---------
Confidence 99 6666 677653 56688999999 66655332100 0002 45788998 6666666442 11
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE--EEEecCCceEEEee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS--VSWCDDSLALVNET 316 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~--~~~spdg~~l~~~~ 316 (751)
...+||||++ |++....... .......|++++ . + ..+.++.. ...+. +.|+ || +++..
T Consensus 219 ------~~~~spdg~~-l~~~~~~~~~----~~~~~~~l~~~d-~---~-~~~~l~~~~~~~~~~~~~~s-dg--~~~~~ 279 (347)
T 2gop_A 219 ------FYAVDSDGER-ILLYGKPEKK----YMSEHNKLYIYD-G---K-EVMGILDEVDRGVGQAKIKD-GK--VYFTL 279 (347)
T ss_dssp ------EEEEEECSSC-EEEEECCSSS----CCCSSCEEEEEC-S---S-CEEESSTTCCSEEEEEEEET-TE--EEEEE
T ss_pred ------eeeECCCCCE-EEEEEccccC----CccccceEEEEC-C---C-ceEeccccCCcccCCccEEc-Cc--EEEEE
Confidence 2245999999 7776532110 011235788887 3 3 33444432 33443 7899 88 65655
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCcee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 396 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (751)
.. ....+|| ++ ++ +.+.++... ..+.. ++|+| + +++.... ......|
T Consensus 280 ~~-~~~~~l~-~~-~g---~~~~~~~~~-~~v~~------~~~s~--~-~~~~~~~-----------------~~~~~~l 326 (347)
T 2gop_A 280 FE-EGSVNLY-IW-DG---EIKPIAKGR-HWIMG------FDVDE--I-VVYLKET-----------------ATRLREL 326 (347)
T ss_dssp EE-TTEEEEE-EE-SS---SEEEEECSS-SEEEE------EEESS--S-EEEEEEC-----------------SSSCCEE
T ss_pred ec-CCcEEEE-Ec-CC---ceEEEecCC-CeEEe------eeeeC--c-EEEEEcC-----------------CCChHHh
Confidence 33 2356899 88 43 334454332 11222 77888 3 4444421 1122378
Q ss_pred EEEecCCCceeEEeecc
Q 004475 397 DLFDINTGSKERIWESN 413 (751)
Q Consensus 397 ~~~d~~~g~~~~l~~~~ 413 (751)
|.++ |+.++|+..+
T Consensus 327 ~~~~---g~~~~lt~~n 340 (347)
T 2gop_A 327 FTWD---GEEKQLTDYN 340 (347)
T ss_dssp EEES---SSEEECCCTT
T ss_pred eEeC---CcEEEecccc
Confidence 8887 5666666544
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=175.97 Aligned_cols=216 Identities=8% Similarity=-0.011 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~ 572 (751)
+.++++.|.+ ++.|+||++|||||..++ ...+ ......|+ ..||.|++++++ +.+.
T Consensus 84 ~~~~~~~p~~------~~~p~vv~lHGgg~~~~~--------~~~~----~~~~~~la~~~g~~vi~~D~r---~~~~-- 140 (326)
T 3d7r_A 84 MQVFRFNFRH------QIDKKILYIHGGFNALQP--------SPFH----WRLLDKITLSTLYEVVLPIYP---KTPE-- 140 (326)
T ss_dssp EEEEEEESTT------CCSSEEEEECCSTTTSCC--------CHHH----HHHHHHHHHHHCSEEEEECCC---CTTT--
T ss_pred EEEEEEeeCC------CCCeEEEEECCCcccCCC--------CHHH----HHHHHHHHHHhCCEEEEEeCC---CCCC--
Confidence 6778888864 136999999998753211 1111 12344555 469999996654 3322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEccCCCCCCCCccCcc-c
Q 004475 573 PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSYNKTLTPFGFQ-T 647 (751)
Q Consensus 573 ~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~d~~~~~~~~~-~ 647 (751)
......++|+.++++++.++ ++.++|+|+||||||.+|+.++.+.|++ ++++|+++|..+......... .
T Consensus 141 ---~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~ 215 (326)
T 3d7r_A 141 ---FHIDDTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA 215 (326)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH
T ss_pred ---CCchHHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh
Confidence 12355688999999999887 6778999999999999999999988766 999999999876432211111 0
Q ss_pred c-cccch---hh----HHHHHh--------cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 004475 648 E-FRTLW---EA----TNVYIE--------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711 (751)
Q Consensus 648 ~-~~~~~---~~----~~~~~~--------~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~ 711 (751)
. ....+ .. ...+.. .+++...-..-+|+|+++|++|.. ...+..+.+++.+.+.++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~----~~~~~~~~~~l~~~~~~~~~~~ 291 (326)
T 3d7r_A 216 LIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMT----HPDMKLFEQMMLQHHQYIEFYD 291 (326)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTT----HHHHHHHHHHHHHTTCCEEEEE
T ss_pred hcccCcccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccc----hHHHHHHHHHHHHCCCcEEEEE
Confidence 0 00000 00 011111 122211111126999999999964 5677889999999889999999
Q ss_pred eCCCCCcCCc--cccHHHHHHHHHHHHHHHhc
Q 004475 712 LPFEHHVYAA--RENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 712 ~~~~~H~~~~--~~~~~~~~~~~~~fl~~~l~ 741 (751)
+|+++|.+.. .+....+.+.+.+||.+++.
T Consensus 292 ~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 292 YPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp ETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred eCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999864 25567888999999988765
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=174.55 Aligned_cols=200 Identities=13% Similarity=0.102 Sum_probs=136.2
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH----HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHH
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF----LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSA 585 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~ 585 (751)
++.|+||++|||||..+.. .... ...+...| +++||.|++++++ +.+... ....++|+
T Consensus 39 ~~~p~vv~lHGgg~~~g~~------~~~~----~~~~~~~L~~~a~~~g~~vi~~d~r---~~~~~~-----~~~~~~d~ 100 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPEN------TPND----FNQLANTIKSMDTESTVCQYSIEYR---LSPEIT-----NPRNLYDA 100 (273)
T ss_dssp TCCEEEEEECCSTTTCTTC------CGGG----GHHHHHHHHHHCTTCCEEEEEECCC---CTTTSC-----TTHHHHHH
T ss_pred CCCeEEEEECCCcccCCcC------ChHH----HHHHHHHHhhhhccCCcEEEEeecc---cCCCCC-----CCcHHHHH
Confidence 3589999999987643211 0011 12344455 5789999996653 333221 23457888
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----------------CCceeEEEEccCCCCCCCCccCccc-
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----------------PHLFCCGIARSGSYNKTLTPFGFQT- 647 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-----------------p~~~~~~v~~~~~~d~~~~~~~~~~- 647 (751)
.++++++.++ ++.++|+|+||||||.+|+.++.+. |++++++|+++|.++..........
T Consensus 101 ~~~~~~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 178 (273)
T 1vkh_A 101 VSNITRLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY 178 (273)
T ss_dssp HHHHHHHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGG
T ss_pred HHHHHHHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccH
Confidence 8999999876 4678999999999999999999885 7889999999997652211000000
Q ss_pred ---------ccccchh-hHHHHHhcCcc--cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 648 ---------EFRTLWE-ATNVYIEMSPI--THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 648 ---------~~~~~~~-~~~~~~~~~~~--~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
.....|. ... ..++. .....+++|+|++||++|.++| +.+++.+++.++..+.++++++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~~~~~~~~l~~~~~~~~~~~~~~~ 253 (273)
T 1vkh_A 179 DCFTRLAFPDGIQMYEEEPS---RVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLG 253 (273)
T ss_dssp HHHHHHHCTTCGGGCCCCHH---HHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHHHhcccccchhhccc---ccChhhhhcccccCCCEEEEecCCcCCCC--hHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 0000011 000 00110 0122267999999999999998 99999999999999999999999999
Q ss_pred CCcCCccccHHHHHHHHHHHH
Q 004475 716 HHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl 736 (751)
+|.+.. +. .++.+.+.+||
T Consensus 254 gH~~~~-~~-~~~~~~i~~fl 272 (273)
T 1vkh_A 254 LHNDVY-KN-GKVAKYIFDNI 272 (273)
T ss_dssp SGGGGG-GC-HHHHHHHHHTC
T ss_pred cccccc-cC-hHHHHHHHHHc
Confidence 999753 33 67777787775
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=162.37 Aligned_cols=181 Identities=17% Similarity=0.122 Sum_probs=133.9
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---------CchhHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---------NDRFVEQL 581 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---------~~~~~~~~ 581 (751)
+.|+||++||.+. .... .......|+. ||.|++++. +.+|+|.+.. ........
T Consensus 37 ~~~~vv~~HG~~~-----------~~~~----~~~~~~~l~~-g~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2h1i_A 37 SKPVLLLLHGTGG-----------NELD----LLPLAEIVDS-EASVLSVRG-NVLENGMPRFFRRLAEGIFDEEDLIFR 99 (226)
T ss_dssp TSCEEEEECCTTC-----------CTTT----THHHHHHHHT-TSCEEEECC-SEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCcEEEEEecCCC-----------ChhH----HHHHHHHhcc-CceEEEecC-cccCCcchhhccccCccCcChhhHHHH
Confidence 4799999999751 1111 1234455555 999999532 5566664321 11112333
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
++++.+.++++.++..++..+|+++|||+||.+|+.++.++|++++++|+++|......
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------- 158 (226)
T 2h1i_A 100 TKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG--------------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS---------------------
T ss_pred HHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc---------------------
Confidence 55566667776777667889999999999999999999999999999999999754321
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
......+++|+|+++|+.|..+| ...++.+++.+.+.+.++++ ++++++|.+. .+..+.+.+||.+++
T Consensus 159 ---~~~~~~~~~p~l~~~G~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 159 ---MQLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp ---CCCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ---cccccccCCcEEEEeCCCCCcCC--HHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 01123357999999999999998 99999999999988888888 9999999874 356788899998764
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=170.89 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=146.2
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.+.. ++..+...++.+... ++..|+||++||.+.. ... ...+...|+++||.|+
T Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~p~vv~~hG~~~~-----------~~~----~~~~~~~l~~~g~~v~ 77 (315)
T 4f0j_A 18 YPVHYLDFTS-QGQPLSMAYLDVAPK----KANGRTILLMHGKNFC-----------AGT----WERTIDVLADAGYRVI 77 (315)
T ss_dssp SCCEEEEEEE-TTEEEEEEEEEECCS----SCCSCEEEEECCTTCC-----------GGG----GHHHHHHHHHTTCEEE
T ss_pred ccceeEEEec-CCCCeeEEEeecCCC----CCCCCeEEEEcCCCCc-----------chH----HHHHHHHHHHCCCeEE
Confidence 3567777764 555565555544321 2246999999996421 111 1245668888999999
Q ss_pred EcCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+ ++.+|+|.+... .....+..+|+..+++.+ +.++++++|||+||.+|+.++.++|++++++|+.+|.
T Consensus 78 ~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 148 (315)
T 4f0j_A 78 A---VDQVGFCKSSKPAHYQYSFQQLAANTHALLERL------GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPI 148 (315)
T ss_dssp E---ECCTTSTTSCCCSSCCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCS
T ss_pred E---eecCCCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCc
Confidence 9 556677766443 223455555555555443 3468999999999999999999999999999999986
Q ss_pred CCCCCCccCcccc-----------------------------cccc---hh---------------------hHHHHHhc
Q 004475 636 YNKTLTPFGFQTE-----------------------------FRTL---WE---------------------ATNVYIEM 662 (751)
Q Consensus 636 ~d~~~~~~~~~~~-----------------------------~~~~---~~---------------------~~~~~~~~ 662 (751)
............. .... |. ........
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (315)
T 4f0j_A 149 GLEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQ 228 (315)
T ss_dssp CSSCHHHHTCCCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcccccchhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccc
Confidence 3211000000000 0000 00 00011122
Q ss_pred CcccccCCCCCCEEEEEcCCCCCCCCChHHH------------HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHH
Q 004475 663 SPITHANKIKKPILIIHGEVDDKVGLFPMQA------------ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 663 ~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
.....+.++++|+|+++|++|..+| .... .+..+.+.+....++++++++++|... .+....+.+
T Consensus 229 ~~~~~l~~~~~P~lii~G~~D~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~ 305 (315)
T 4f0j_A 229 PVVYELDRLQMPTLLLIGEKDNTAI--GKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQ 305 (315)
T ss_dssp CCGGGGGGCCSCEEEEEETTCCCCT--TGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHH
T ss_pred hhhhhcccCCCCeEEEEecCCCcCc--cccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHH
Confidence 3344577889999999999999987 4433 445555555556789999999999865 556678888
Q ss_pred HHHHHHHH
Q 004475 731 ETDRWLQK 738 (751)
Q Consensus 731 ~~~~fl~~ 738 (751)
.+.+||++
T Consensus 306 ~i~~fl~~ 313 (315)
T 4f0j_A 306 ALLEGLQT 313 (315)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 88888864
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-18 Score=168.53 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=142.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.|+||++||.+.. ... ...+...|+++||.|++ ++.+|+|.+... ........+|+.+++
T Consensus 40 ~~~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~---~d~~G~G~s~~~~~~~~~~~~~~d~~~~i 101 (270)
T 3rm3_A 40 PVGVLLVHGFTGT-----------PHS----MRPLAEAYAKAGYTVCL---PRLKGHGTHYEDMERTTFHDWVASVEEGY 101 (270)
T ss_dssp SEEEEEECCTTCC-----------GGG----THHHHHHHHHTTCEEEE---CCCTTCSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCC-----------hhH----HHHHHHHHHHCCCEEEE---eCCCCCCCCccccccCCHHHHHHHHHHHH
Confidence 5899999996411 111 23556788889999999 566677776321 223567789999999
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----------c------Ccccc----
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----------F------GFQTE---- 648 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----------~------~~~~~---- 648 (751)
+++.++ ..+++++|||+||.+|+.++.++|+ ++++|+++|..+..... + .....
T Consensus 102 ~~l~~~----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3rm3_A 102 GWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE 176 (270)
T ss_dssp HHHHTT----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCC
T ss_pred HHHHhh----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHh
Confidence 999875 4789999999999999999999998 99999999875421100 0 00000
Q ss_pred ---cccchhhHHHHHh--cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 649 ---FRTLWEATNVYIE--MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 649 ---~~~~~~~~~~~~~--~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
...+......+.. ......+.++++|+|+++|++|..+| +..+..+++.+.. .+++++++|+++|.+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~ 252 (270)
T 3rm3_A 177 LAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVP--PGNADIIFQGISS--TEKEIVRLRNSYHVATLDY 252 (270)
T ss_dssp CCCSEEEHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHSCC--SSEEEEEESSCCSCGGGST
T ss_pred hcccccChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccC--HHHHHHHHHhcCC--CcceEEEeCCCCcccccCc
Confidence 0000000000000 01223466789999999999999998 8888888877753 3679999999999987555
Q ss_pred cHHHHHHHHHHHHHHHh
Q 004475 724 NVMHVIWETDRWLQKYC 740 (751)
Q Consensus 724 ~~~~~~~~~~~fl~~~l 740 (751)
...++.+.+.+||+++.
T Consensus 253 ~~~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 253 DQPMIIERSLEFFAKHA 269 (270)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 56789999999998864
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=173.89 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=144.0
Q ss_pred eEEEEEE---cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 481 KEMIKYQ---RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 481 ~e~i~~~---~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
...+++. ..++..+.+++|.|.+.. .+.|+||++||+++.. ..+ .......++++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~~----~~~p~vv~lHG~~~~~-----------~~~---~~~~~~~l~~~g~~v 85 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGYT----PDRPVVVVQHGVLRNG-----------ADY---RDFWIPAADRHKLLI 85 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTCC----TTSCEEEEECCTTCCH-----------HHH---HHHTHHHHHHHTCEE
T ss_pred CceEEecccCCCCCceEEEEEEeCCCCC----CCCcEEEEeCCCCCCH-----------HHH---HHHHHHHHHHCCcEE
Confidence 3446665 567788999999997632 2479999999976321 111 113355677899999
Q ss_pred EEcCCCCC---------CCC--CCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-c
Q 004475 558 LAGPSIPI---------IGE--GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-L 625 (751)
Q Consensus 558 ~~~~~~~~---------~g~--g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~ 625 (751)
++++++.. .|+ |.+...........+|+.++++++.++..+|+++|+|+||||||.+|+.++.++|+ +
T Consensus 86 ~~~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 165 (304)
T 3d0k_A 86 VAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAP 165 (304)
T ss_dssp EEEECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTT
T ss_pred EEeCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCc
Confidence 99776521 033 33322211112334678899999998877889999999999999999999999985 7
Q ss_pred eeEEEEcc-CCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCC---------------
Q 004475 626 FCCGIARS-GSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF--------------- 689 (751)
Q Consensus 626 ~~~~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~--------------- 689 (751)
++++|+.. |.++.......+..... . ...++......+++|+|++||+.|..+..+
T Consensus 166 ~~~~vl~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~ 237 (304)
T 3d0k_A 166 FHAVTAANPGWYTLPTFEHRFPEGLD-G-------VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHR 237 (304)
T ss_dssp CSEEEEESCSSCCCSSTTSBTTTSSB-T-------TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSH
T ss_pred eEEEEEecCcccccCCccccCccccC-C-------CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccH
Confidence 88888655 55442211100000000 0 001222222334689999999999874100
Q ss_pred hHHHHHHHHHHH----hCCCc--EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 690 PMQAERFFDALK----GHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 690 ~~~~~~~~~~l~----~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
...+..+++.++ +.+.+ ++++++|+++|.+. .....+.+||...
T Consensus 238 ~~~~~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~~ 287 (304)
T 3d0k_A 238 YARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFDG 287 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhhh
Confidence 234566677665 55666 99999999999873 4456677777543
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=168.28 Aligned_cols=239 Identities=13% Similarity=0.073 Sum_probs=152.7
Q ss_pred ceEEEEEEcCC-CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~-~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+++.+.. +..+.++ +.|.. .++|+||++||++.. +....|... ......+++.||+|+
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~~------~~~p~vvllHG~~~~---------~~~~~w~~~-~~~~~~~~~~~~~vv 70 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSGG------ANSPALYLLDGLRAQ---------DDFSGWDIN-TPAFEWYDQSGLSVV 70 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS------TTBCEEEEECCTTCC---------SSSCHHHHH-CCHHHHHTTSSCEEE
T ss_pred eEEEEEEECccCCCceEEE-ECCCC------CCCCEEEEeCCCCCC---------CCcchhhcC-CCHHHHHhcCCeEEE
Confidence 45677777653 4567666 44542 248999999997310 011111110 012345567899999
Q ss_pred EcCCCCCCCCCCCCC---------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004475 559 AGPSIPIIGEGDKLP---------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 629 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~---------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 629 (751)
+++.....++..... ...+...+.++ ++.++.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 147 (304)
T 1sfr_A 71 MPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSE---LPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147 (304)
T ss_dssp EECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTH---HHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEE
T ss_pred EECCCCCccccccCCccccccccccccHHHHHHHH---HHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEE
Confidence 976643222211101 11222222344 444444433467789999999999999999999999999999
Q ss_pred EEccCCCCCCCCccCc------ccc----cccchh--hHHHHHhcCcccccCCC---CCCEEEEEcCCCC----------
Q 004475 630 IARSGSYNKTLTPFGF------QTE----FRTLWE--ATNVYIEMSPITHANKI---KKPILIIHGEVDD---------- 684 (751)
Q Consensus 630 v~~~~~~d~~~~~~~~------~~~----~~~~~~--~~~~~~~~~~~~~~~~~---~~P~li~~G~~D~---------- 684 (751)
++++|.++.....+.. ... ....|. ....+...+|...+.++ ++|+++.||+.|+
T Consensus 148 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~ 227 (304)
T 1sfr_A 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPA 227 (304)
T ss_dssp EEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHH
T ss_pred EEECCccCccccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCcccccccccc
Confidence 9999987643211000 000 000010 11234555665555444 5899999999998
Q ss_pred ----CCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 685 ----KVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 685 ----~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
.++ ...+++++++|+++| .++++.++++++|.+. .+...+..++.||.+++...
T Consensus 228 ~~~e~~~--~~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~~~ 286 (304)
T 1sfr_A 228 KFLEGFV--RTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGAT 286 (304)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTCC
T ss_pred chhHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcCCC
Confidence 566 889999999999999 9999999987799853 35567788999999998753
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=160.25 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=137.9
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
++..+...++.|.. .+.|+||++||.+.. ...+ ......|+ .||.|++++.....+.|
T Consensus 14 ~~~~l~~~~~~~~~------~~~p~vv~lHG~g~~-----------~~~~----~~~~~~l~-~~~~vv~~d~~~~~~~g 71 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK------ESRECLFLLHGSGVD-----------ETTL----VPLARRIA-PTATLVAARGRIPQEDG 71 (223)
T ss_dssp CSSSSCEEEESTTS------SCCCEEEEECCTTBC-----------TTTT----HHHHHHHC-TTSEEEEECCSEEETTE
T ss_pred cCCCceEEEeCCCC------CCCCEEEEEecCCCC-----------HHHH----HHHHHhcC-CCceEEEeCCCCCcCCc
Confidence 34456666665543 124899999997521 1111 12344444 49999996642210001
Q ss_pred CCC--------CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 570 DKL--------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 570 ~~~--------~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
... ..........+++.+.++++.++..+++++|+++|||+||.+|+.++.++|++++++|+++|.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 151 (223)
T 3b5e_A 72 FRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHV 151 (223)
T ss_dssp EESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSSC
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcccc
Confidence 110 111223455778888888887765678899999999999999999999999999999999997542110
Q ss_pred ccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc
Q 004475 642 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA 721 (751)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 721 (751)
.....+++|+|++||++|..+| ...++ +++.+++.+.++++++++ ++|.+..
T Consensus 152 ------------------------~~~~~~~~P~li~~G~~D~~v~--~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~~ 203 (223)
T 3b5e_A 152 ------------------------PATDLAGIRTLIIAGAADETYG--PFVPA-LVTLLSRHGAEVDARIIP-SGHDIGD 203 (223)
T ss_dssp ------------------------CCCCCTTCEEEEEEETTCTTTG--GGHHH-HHHHHHHTTCEEEEEEES-CCSCCCH
T ss_pred ------------------------ccccccCCCEEEEeCCCCCcCC--HHHHH-HHHHHHHCCCceEEEEec-CCCCcCH
Confidence 1123467999999999999999 89999 999999988899999999 9999752
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 004475 722 RENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 722 ~~~~~~~~~~~~~fl~~~l~ 741 (751)
+..+.+.+||.+.+.
T Consensus 204 -----~~~~~i~~~l~~~~~ 218 (223)
T 3b5e_A 204 -----PDAAIVRQWLAGPIA 218 (223)
T ss_dssp -----HHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHHhhhh
Confidence 345688999987553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=181.89 Aligned_cols=298 Identities=11% Similarity=0.068 Sum_probs=183.1
Q ss_pred ceeEEeecCCCCCCCCcccccC---CCCcc--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHG---YPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~---~~~~~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
..||++++.+ |+.+.|.. +..+. .+..++|||||++|||.+... +....+||++++++|+.++++.
T Consensus 98 ~~l~~~~~~~----~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~~ 168 (710)
T 2xdw_A 98 RVLYVQDSLE----GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVL 168 (710)
T ss_dssp CEEEEESSTT----SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCC----CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCcccc
Confidence 4688888877 77765532 11221 467899999999999987531 1333599999999999877643
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
... .+..++|||||+.|+|.+........ . +... . .....+|
T Consensus 169 ~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~---~---~~~~-----~----------------------~~~~~~v 210 (710)
T 2xdw_A 169 ERV-----KFSCMAWTHDGKGMFYNAYPQQDGKS---D---GTET-----S----------------------TNLHQKL 210 (710)
T ss_dssp EEE-----CSCCEEECTTSSEEEEEECCCCSSCC---S---SSCC-----C----------------------CCCCCEE
T ss_pred cCc-----ccceEEEEeCCCEEEEEEECCccccc---c---cccc-----c----------------------cCCCCEE
Confidence 221 14578999999999999764321100 0 0000 0 0022589
Q ss_pred EEEcC-CCCc--eec-CCC---ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC------c--eeeee
Q 004475 160 VLGSL-DGTA--KDF-GTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------K--LVREL 224 (751)
Q Consensus 160 ~~~~~-~G~~--~~l-t~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------~--~~~~l 224 (751)
|++++ +++. +.+ ... .....+.|||||++|++.+.... ....+||++|+++ + ..+.|
T Consensus 211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC--------DPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS--------SSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC--------CCccEEEEEECcccccccCCccceEEe
Confidence 99999 5532 233 221 34668999999999999875321 1246899999976 4 34555
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEeece--
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDL-- 299 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~-- 299 (751)
...... . ...|+|||++ |++.+..+ ..+..|++++++ +.. .+.+.....
T Consensus 283 ~~~~~~-------------~-~~~~s~dg~~-l~~~s~~~--------~~~~~l~~~d~~---~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 283 IDNFEG-------------E-YDYVTNEGTV-FTFKTNRH--------SPNYRLINIDFT---DPEESKWKVLVPEHEKD 336 (710)
T ss_dssp ECSSSS-------------C-EEEEEEETTE-EEEEECTT--------CTTCEEEEEETT---SCCGGGCEEEECCCSSC
T ss_pred eCCCCc-------------E-EEEEeccCCE-EEEEECCC--------CCCCEEEEEeCC---CCCcccceeccCCCCCC
Confidence 432211 1 2369999999 67654211 124589999986 322 355554433
Q ss_pred eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcce
Q 004475 300 RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 378 (751)
Q Consensus 300 ~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 378 (751)
.+. +.|++++. |++.... ....+||++++.++ ...+.+... ...+.. ++++|||+.|+|....
T Consensus 337 ~~~~~~~~~~~~-lv~~~~~-~g~~~l~~~~~~~g-~~~~~l~~~-~~~v~~------~~~s~d~~~l~~~~ss------ 400 (710)
T 2xdw_A 337 VLEWVACVRSNF-LVLCYLH-DVKNTLQLHDLATG-ALLKIFPLE-VGSVVG------YSGQKKDTEIFYQFTS------ 400 (710)
T ss_dssp EEEEEEEETTTE-EEEEEEE-TTEEEEEEEETTTC-CEEEEECCC-SSEEEE------EECCTTCSEEEEEEEC------
T ss_pred eEEEEEEEcCCE-EEEEEEE-CCEEEEEEEECCCC-CEEEecCCC-CceEEE------EecCCCCCEEEEEEeC------
Confidence 566 88986554 5555533 34468999998553 222334322 111111 6789999988887622
Q ss_pred EEEEccCCCCCCCCCceeEEEecCCCc--eeEEe
Q 004475 379 YILLNGRGFTPEGNIPFLDLFDINTGS--KERIW 410 (751)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~ 410 (751)
......|+++|+.+|+ .+.+.
T Consensus 401 -----------~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 401 -----------FLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp -----------SSCCCEEEEEETTSSSCCCEEEE
T ss_pred -----------CCCCCEEEEEECCCCccceEEee
Confidence 1234589999999887 44443
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-17 Score=164.64 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=141.8
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
++...+...+|..+.++.+.|....+ .+.|+||++||.+.. ... ...+...|+++||.|++
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~---~~~~~VvllHG~g~~--------------~~~-~~~~~~~L~~~G~~Vi~- 67 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVP---FKNNTILIASGFARR--------------MDH-FAGLAEYLSTNGFHVFR- 67 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSC---CCSCEEEEECTTCGG--------------GGG-GHHHHHHHHTTTCCEEE-
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCC---CCCCEEEEecCCccC--------------chH-HHHHHHHHHHCCCEEEE-
Confidence 45566777788899999998754111 135899999996411 111 12456677889999999
Q ss_pred CCCCCCCC-CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 561 PSIPIIGE-GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 561 ~~~~~~g~-g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
+|.+|+ |.+... ........+|+..+++++.+.+ ..+++++||||||.+|+.+|.+ | +++++|+.++..+
T Consensus 68 --~D~rGh~G~S~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~ 140 (305)
T 1tht_A 68 --YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVN 140 (305)
T ss_dssp --ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSC
T ss_pred --eeCCCCCCCCCCcccceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchh
Confidence 556676 655332 2234567889999999998543 4689999999999999999988 6 7899998877533
Q ss_pred CCC-------Ccc------Ccccccccc-h-hhHHHH----Hhc------CcccccCCCCCCEEEEEcCCCCCCCCChHH
Q 004475 638 KTL-------TPF------GFQTEFRTL-W-EATNVY----IEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 638 ~~~-------~~~------~~~~~~~~~-~-~~~~~~----~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~ 692 (751)
... ..+ ......... . .....+ ... +....+.++++|+|++||++|..+| +..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp--~~~ 218 (305)
T 1tht_A 141 LRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEE 218 (305)
T ss_dssp HHHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHH
T ss_pred HHHHHHHHhhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccC--HHH
Confidence 100 000 000000000 0 000101 111 1223567899999999999999999 888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCccc-cHHHHHHHHHHHHHH
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAARE-NVMHVIWETDRWLQK 738 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~fl~~ 738 (751)
++++++.+.. ..++++++++++|.+...+ ...+++..+.+|...
T Consensus 219 ~~~l~~~i~~--~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~ 263 (305)
T 1tht_A 219 VYDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 263 (305)
T ss_dssp HHHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHH
Confidence 7777655432 3579999999999975211 122344444555443
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=164.63 Aligned_cols=180 Identities=16% Similarity=0.100 Sum_probs=129.6
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC---------CchhHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---------NDRFVEQL 581 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---------~~~~~~~~ 581 (751)
+.|+||++||.+.. ...+ ......|+ .+|.|++++. +..|+|.+.. ........
T Consensus 61 ~~p~vv~~HG~~~~-----------~~~~----~~~~~~l~-~~~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 123 (251)
T 2r8b_A 61 GAPLFVLLHGTGGD-----------ENQF----FDFGARLL-PQATILSPVG-DVSEHGAARFFRRTGEGVYDMVDLERA 123 (251)
T ss_dssp TSCEEEEECCTTCC-----------HHHH----HHHHHHHS-TTSEEEEECC-SEEETTEEESSCBCGGGCBCHHHHHHH
T ss_pred CCcEEEEEeCCCCC-----------HhHH----HHHHHhcC-CCceEEEecC-CcCCCCCcccccCCCCCcCCHHHHHHH
Confidence 47999999996411 0111 12333444 4699999632 4556554321 11123344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+|+.++++++.++. +.++|+++||||||.+|+.++.++|++++++|+++|..+...
T Consensus 124 ~~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~--------------------- 180 (251)
T 2r8b_A 124 TGKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP--------------------- 180 (251)
T ss_dssp HHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC---------------------
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc---------------------
Confidence 677778888776653 678999999999999999999999999999999999764321
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
......+++|+|+++|++|..+| ...++++++.+++.+.++++ ++++++|.+. .+..+.+.+||.++++
T Consensus 181 ---~~~~~~~~~P~li~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 181 ---KISPAKPTRRVLITAGERDPICP--VQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp ---CCCCCCTTCEEEEEEETTCTTSC--HHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ---cccccccCCcEEEeccCCCccCC--HHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 01123467999999999999998 99999999999987777776 6667899874 2456789999998875
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=167.78 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=95.1
Q ss_pred cEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcC
Q 004475 602 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGE 681 (751)
Q Consensus 602 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~ 681 (751)
+++++||||||.+++.++.++|++++++|+++|... ..+......+++|+|++||+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------------~~~~~~~~~~~~PvLii~G~ 254 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------------PKPEDVKPLTSIPVLVVFGD 254 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------------CCGGGCGGGTTSCEEEEECS
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------------CCHHHHhhccCCCEEEEecc
Confidence 899999999999999999999999999999997531 00011122357999999999
Q ss_pred CCCCCCCCh-----HHHHHHHHHHHhCCCcEEEEEeCCCC-----CcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 682 VDDKVGLFP-----MQAERFFDALKGHGALSRLVLLPFEH-----HVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 682 ~D~~vp~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~-----H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+|..+| . ..++.+++.+.+.+.+++++++++++ |.+....+..++.+.+.+||++++.+
T Consensus 255 ~D~~~p--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~~~ 323 (328)
T 1qlw_A 255 HIEEFP--RWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNTAK 323 (328)
T ss_dssp SCTTCT--TTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTCC-
T ss_pred CCcccc--chhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhcccC
Confidence 999998 7 88999999999988899999999665 99875555788999999999998753
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=164.82 Aligned_cols=246 Identities=14% Similarity=0.137 Sum_probs=153.8
Q ss_pred CCceEEEEEEcCC--C--ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-h
Q 004475 478 SLQKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-A 552 (751)
Q Consensus 478 ~~~~e~i~~~~~~--~--~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 552 (751)
.....+|.|.+.+ | ..+.++++.|.+. +++.|+|++.||.+. ... +.|.............|+ +
T Consensus 40 ~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~----~~~~PvV~~~HG~~~--~~~-----~~ps~~~~~~~~~~~~lal~ 108 (377)
T 4ezi_A 40 DLQLYKINYKTQSPDGNLTIASGLVAMPIHP----VGQVGIISYQHGTRF--ERN-----DVPSRNNEKNYIYLAAYGNS 108 (377)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEESSC----SSCEEEEEEECCCCC--STT-----CSGGGCCGGGHHHHHHHTTT
T ss_pred CcEEEEEEEEEECCCCCEEEEEEEEEECCCC----CCCCcEEEEeCCCcC--Ccc-----cCCCcCcccchHHHHHHHHh
Confidence 3467778888765 3 3588999999863 246899999999752 111 111110001123445677 9
Q ss_pred CCeEEEEcCCCCCCCCCCCCC-Cchh--HH---HHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhCCC-
Q 004475 553 RRFAVLAGPSIPIIGEGDKLP-NDRF--VE---QLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHAPH- 624 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~-~~~~--~~---~~~~d~~~~v~~l~~-~~~id~~~i~l~G~S~GG~~a~~~a~~~p~- 624 (751)
+||+|+++ +++|+|.+.. ...+ .. ..+.|..+++..+.+ .+..+..+|+++||||||++++.++...|+
T Consensus 109 ~Gy~Vv~~---D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~ 185 (377)
T 4ezi_A 109 AGYMTVMP---DYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKE 185 (377)
T ss_dssp TCCEEEEE---CCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEe---CCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhh
Confidence 99999994 4556665432 1111 11 223333333333333 333356899999999999999999887543
Q ss_pred ----ceeEEEEccCCCCCCCC----------c---c-C--------ccccc-------ccc-------------------
Q 004475 625 ----LFCCGIARSGSYNKTLT----------P---F-G--------FQTEF-------RTL------------------- 652 (751)
Q Consensus 625 ----~~~~~v~~~~~~d~~~~----------~---~-~--------~~~~~-------~~~------------------- 652 (751)
.++++++.++++|.... . + + +.... ...
T Consensus 186 ~~~l~l~g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 265 (377)
T 4ezi_A 186 YPDLPVSAVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEIL 265 (377)
T ss_dssp CTTSCCCEEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHH
T ss_pred CCCCceEEEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhh
Confidence 58899998887662100 0 0 0 00000 000
Q ss_pred ---------hhhHHHH---Hh-cCc-cc--------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 653 ---------WEATNVY---IE-MSP-IT--------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 653 ---------~~~~~~~---~~-~~~-~~--------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
+-..... .. ..+ +. .-.++++|+|++||++|.+|| +.++.++++++++.|. ++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp--~~~~~~l~~~l~~~G~-v~~~ 342 (377)
T 4ezi_A 266 QALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVP--YAGAEMAYHSFRKYSD-FVWI 342 (377)
T ss_dssp HHSCSSGGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSC--HHHHHHHHHHHHTTCS-CEEE
T ss_pred hccCCCHHHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCC--HHHHHHHHHHHHhcCC-EEEE
Confidence 0000000 00 011 10 012467999999999999999 9999999999999999 9999
Q ss_pred EeCC--CCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 711 LLPF--EHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 711 ~~~~--~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
++++ .+|... .......+++||++++.+..
T Consensus 343 ~~~~~~~~H~~~----~~~~~~~~~~wl~~~~~~~~ 374 (377)
T 4ezi_A 343 KSVSDALDHVQA----HPFVLKEQVDFFKQFERQEA 374 (377)
T ss_dssp EESCSSCCTTTT----HHHHHHHHHHHHHHHHTSSC
T ss_pred EcCCCCCCccCh----HHHHHHHHHHHHHHhhcchh
Confidence 9999 899754 34677889999999987644
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=179.35 Aligned_cols=294 Identities=12% Similarity=0.030 Sum_probs=182.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCC---c--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPD---G--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~---~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
..||+++..+ |+.+.|+.... + ..+..++|||||++|||+.... +....+|+++++++|+..+...
T Consensus 94 ~~l~~~~~~~----~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~-----G~~~~~i~v~dl~tg~~~~~~~ 164 (695)
T 2bkl_A 94 AILYWRQGES----GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN-----AADEAVLHVIDVDSGEWSKVDV 164 (695)
T ss_dssp CEEEEEESTT----SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET-----TCSCCEEEEEETTTCCBCSSCC
T ss_pred EEEEEEcCCC----CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC-----CCceEEEEEEECCCCCCcCCcc
Confidence 4589999877 88888864221 1 1478899999999999987532 1345799999999998652211
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
.... ....++|||||+.|+|.+.+..... ... ......+|
T Consensus 165 ~~~~----~~~~~~wspDg~~l~~~~~d~~~~~---------~~~---------------------------~~~~~~~v 204 (695)
T 2bkl_A 165 IEGG----KYATPKWTPDSKGFYYEWLPTDPSI---------KVD---------------------------ERPGYTTI 204 (695)
T ss_dssp BSCC----TTCCCEECTTSSEEEEEECCCCTTS---------CGG---------------------------GGGGGCEE
T ss_pred cCcc----cccceEEecCCCEEEEEEecCCCCC---------ccc---------------------------cCCCCCEE
Confidence 1111 1257899999999999976432110 000 00022689
Q ss_pred EEEcC-CCC--ceecCCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 160 ~~~~~-~G~--~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
|++++ +++ .+.+... ..+..+.|||||++|++.+.... ...+||+++..+++.++|......
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~l~~~~~~-- 273 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFRLLVKGVGA-- 273 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCEEEEECSSC--
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceEEeecCCCc--
Confidence 99999 554 2344322 35678999999999999876531 146799998877767766543321
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEee--ceeEE-EEEe
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKL--DLRFS-VSWC 306 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~--~~~~~-~~~s 306 (751)
.....| |||+ +++. +.. ......|++++++ +.. .+.+... ...+. +.|+
T Consensus 274 -----------~~~~~~-~~g~-l~~~-s~~--------~~~~~~l~~~d~~---~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 274 -----------KYEVHA-WKDR-FYVL-TDE--------GAPRQRVFEVDPA---KPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp -----------CEEEEE-ETTE-EEEE-ECT--------TCTTCEEEEEBTT---BCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred -----------eEEEEe-cCCc-EEEE-ECC--------CCCCCEEEEEeCC---CCCccCCeEEecCCCCCeEEEEEEE
Confidence 123345 7887 4444 311 1134689999985 333 2455543 33456 7887
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 386 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 386 (751)
++ .|++.... ....+||+++++++ ..+.+.......+.. ++++|||+.|++.....
T Consensus 329 -~~-~lv~~~~~-dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~------------- 384 (695)
T 2bkl_A 329 -GG-HLSLEYLK-DATSEVRVATLKGK--PVRTVQLPGVGAASN------LMGLEDLDDAYYVFTSF------------- 384 (695)
T ss_dssp -TT-EEEEEEEE-TTEEEEEEEETTCC--EEEECCCSSSSEECC------CBSCTTCSEEEEEEEET-------------
T ss_pred -CC-EEEEEEEE-CCEEEEEEEeCCCC--eeEEecCCCCeEEEE------eecCCCCCEEEEEEcCC-------------
Confidence 44 45555533 34578999998653 233333211111112 66899999888877321
Q ss_pred CCCCCCCceeEEEecCCCceeEEee
Q 004475 387 FTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 387 ~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
.....|++||+.+++.+.+..
T Consensus 385 ----~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 385 ----TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp ----TEEEEEEEEETTTCCEEEEEE
T ss_pred ----CCCCEEEEEECCCCcEEEEec
Confidence 223479999999988766544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-16 Score=157.12 Aligned_cols=280 Identities=9% Similarity=0.075 Sum_probs=192.5
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
--+++||.+|+|... .+...||.|+.++++.++|+... .--++++|++|+|..........
T Consensus 19 g~~~~~g~~iy~~n~--------~d~~~ly~~~~dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~~~-- 79 (302)
T 3s25_A 19 GLFCESDGEVFFSNT--------NDNGRLYAMNIDGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKITS-- 79 (302)
T ss_dssp TCEEEETTEEEEEEG--------GGTTEEEEEETTSCSCEEEEEEE---------EEEEEECSSEEEEEEECC-------
T ss_pred eEEEEeCCEEEEEeC--------CCCceEEEEcCCCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcccc--
Confidence 357899999999653 23478999999999999996532 12568999999999654221100
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCCceEEeeeeCCCCceEEEEEe
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSM 194 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~ 194 (751)
...| ......|+.++++| +.++|++... ..|+++|++|+|+..
T Consensus 80 --------------------------------~~~~-~~n~~~Iy~i~~dg~~~~~l~~~~~---~~~s~~g~~Iy~~~~ 123 (302)
T 3s25_A 80 --------------------------------QTFF-SYDRNSLCRIKRNGHGSTVLDPDPC---IYASLIGNYIYYLHY 123 (302)
T ss_dssp ---------------------------------CCS-SCCSEEEEEEETTSCCCEEEECSCE---EEEEEETTEEEEEEE
T ss_pred --------------------------------ccee-ccCCCeEEEEeCCCCcceEeecCCc---cEEEEeCCEEEEEee
Confidence 0000 00226899999977 6667765422 378999999999862
Q ss_pred cCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCc
Q 004475 195 HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (751)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~ 274 (751)
.+ .....||+.++++...++|+.... ..++|+|+. |+|++. .
T Consensus 124 ~~---------~~~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~~-iy~t~~-----------g 165 (302)
T 3s25_A 124 DT---------QTATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDRY-FYYNNP-----------K 165 (302)
T ss_dssp SS---------SSCEEEEEEETTSCCCEEEESSCC-----------------CCSEEETTE-EEEECT-----------T
T ss_pred cC---------CCCceEEEEECCCCCeEEEeCCCc-----------------eEeeEECCE-EEEEeC-----------C
Confidence 11 014679999999988888866532 267899999 999751 3
Q ss_pred ccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCC
Q 004475 275 RDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 353 (751)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 353 (751)
+.+||+++++ ++..+.|... ... + ++|+|++|+|+.... ..+|++++++++ ..++|+....
T Consensus 166 ~~~Iy~~~l~---g~~~~~l~~~--~~~~~-~~P~g~~iy~t~~~~--~~~I~~~~ldG~--~~~~Lt~~~~-------- 227 (302)
T 3s25_A 166 NGQLYRYDTA---SQSEALFYDC--NCYKP-VVLDDTNVYYMDVNR--DNAIVHVNINNP--NPVVLTEANI-------- 227 (302)
T ss_dssp TCCEEEEETT---TTEEEEEECS--CEEEE-EEEETTEEEEEEGGG--TTEEEEECSSSC--CCEECSCSCE--------
T ss_pred CceEEEEECC---CCCEEEEeCC--Cccce-eeecCCEEEEEEcCC--CcEEEEEECCCC--CeEEEeCCCc--------
Confidence 4689999986 6666666542 233 4 459999999987542 258999999994 5567764321
Q ss_pred CCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceee
Q 004475 354 SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI 433 (751)
Q Consensus 354 ~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 433 (751)
+.|+|+|++|+|.... ....|+++++++...++|...+. .++
T Consensus 228 ---~~~~~~g~~Iy~~~~~-------------------~~~~i~~~~~DG~~r~~l~~~~~----------------~~i 269 (302)
T 3s25_A 228 ---EHYNVYGSLIFYQRGG-------------------DNPALCVVKNDGTGFKELAKGEF----------------CNI 269 (302)
T ss_dssp ---EEEEEETTEEEEEECS-------------------SSCEEEEEETTSCCCEEEEESCE----------------EEE
T ss_pred ---ceEEECCCEEEEEECC-------------------CCcEEEEEECCCCccEEeeCCcc----------------ceE
Confidence 4589999999887621 12589999998777777754321 145
Q ss_pred ccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 434 NLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 434 s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
++-+.+|+|+..... .|+++.+++...++|.
T Consensus 270 ~i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 270 NVTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp EECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred EEeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 567889999875433 4999998765555554
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-17 Score=162.47 Aligned_cols=212 Identities=11% Similarity=0.149 Sum_probs=136.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~ 573 (751)
+...+|.|.+ ++.|+|||+|||||..++. ..+ .......+++.||.|++++|+ +.++
T Consensus 15 ~~~~~y~p~~------~~~p~iv~~HGGg~~~g~~--------~~~---~~~~~~~l~~~g~~Vi~vdYr---laPe--- 71 (274)
T 2qru_A 15 ATVTIYPTTT------EPTNYVVYLHGGGMIYGTK--------SDL---PEELKELFTSNGYTVLALDYL---LAPN--- 71 (274)
T ss_dssp CEEEEECCSS------SSCEEEEEECCSTTTSCCG--------GGC---CHHHHHHHHTTTEEEEEECCC---CTTT---
T ss_pred eeEEEEcCCC------CCCcEEEEEeCccccCCCh--------hhc---hHHHHHHHHHCCCEEEEeCCC---CCCC---
Confidence 4557777753 2379999999998754322 111 122344567889999997775 3221
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCceeEEEEccCCCCCCCCcc----Ccc
Q 004475 574 NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA---HAPHLFCCGIARSGSYNKTLTPF----GFQ 646 (751)
Q Consensus 574 ~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~~~~d~~~~~~----~~~ 646 (751)
..++..++|+.++++|+.++.. ++++|+|+|+|+||++|+.++. ..+..++++++++|..+...... ..+
T Consensus 72 --~~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~ 148 (274)
T 2qru_A 72 --TKIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQ 148 (274)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSS
T ss_pred --CCCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccc
Confidence 2346779999999999987642 2689999999999999999987 34667889998888765211100 000
Q ss_pred ---c---------c--cccchhh-H------------HHHHhc-C-------cc--cccCCCCCCEEEEEcCCCCCCCCC
Q 004475 647 ---T---------E--FRTLWEA-T------------NVYIEM-S-------PI--THANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 647 ---~---------~--~~~~~~~-~------------~~~~~~-~-------~~--~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
. . ....+.. . ..+... . ++ ..+.++ +|+||++|+.|+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~-- 225 (274)
T 2qru_A 149 AISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVP-- 225 (274)
T ss_dssp CCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSC--
T ss_pred cccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcC--
Confidence 0 0 0000000 0 001000 0 01 123445 799999999999988
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc---ccHHHHHHHHHHHHHH
Q 004475 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAAR---ENVMHVIWETDRWLQK 738 (751)
Q Consensus 690 ~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~fl~~ 738 (751)
...++.+.+++ .+++++++++++|.+... +...++++.+.+||.+
T Consensus 226 ~~~~~~l~~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 226 FRYSKKIGRTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp THHHHHHHHHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 77776666554 457999999999998532 1223567888899864
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=153.42 Aligned_cols=173 Identities=12% Similarity=0.082 Sum_probs=123.8
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
+.|+||++||.+. +...+. ...+...|+++||.|++ .+++|+|.+.... ......+++..+++
T Consensus 3 ~~~~vv~~HG~~~-----------~~~~~~--~~~~~~~l~~~g~~v~~---~d~~g~g~s~~~~-~~~~~~~~~~~~~~ 65 (176)
T 2qjw_A 3 SRGHCILAHGFES-----------GPDALK--VTALAEVAERLGWTHER---PDFTDLDARRDLG-QLGDVRGRLQRLLE 65 (176)
T ss_dssp SSCEEEEECCTTC-----------CTTSHH--HHHHHHHHHHTTCEEEC---CCCHHHHTCGGGC-TTCCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCC-----------CccHHH--HHHHHHHHHHCCCEEEE---eCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 3689999999641 111111 11455677889999999 4555665543211 11223445556667
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCC
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANK 670 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (751)
++.+.. +..+++++|||+||.+|+.++.++| ++++|+.+|..+.... ..+.+
T Consensus 66 ~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~------------------------~~~~~ 117 (176)
T 2qjw_A 66 IARAAT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL------------------------PALDA 117 (176)
T ss_dssp HHHHHH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB------------------------CCCCC
T ss_pred HHHhcC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc------------------------Ccccc
Confidence 776653 3478999999999999999999997 9999999987543210 00456
Q ss_pred CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 671 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 671 ~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+++|+|+++|++|..+| ...++++++.+ +++++++ +++|.+ .+...++.+.+.+||++
T Consensus 118 ~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 118 AAVPISIVHAWHDELIP--AADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp CSSCEEEEEETTCSSSC--HHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCccC--HHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 78999999999999999 89998888877 3578888 889997 36677888888888863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=186.63 Aligned_cols=264 Identities=10% Similarity=0.007 Sum_probs=169.6
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEc--CCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~--~~g~~~~lt~~~~~ 83 (751)
.+.+|++.+ |+.++++.... ..+..|+|||| +++|++..+ ......+||++++ +++. ++++....
T Consensus 45 ~~~lw~~~~----g~~~~lt~~~~-~~~~~~~~spd--~~l~~~~~~----~g~~~~~l~~~~~~~~g~~-~~l~~~~~- 111 (582)
T 3o4h_A 45 SVNAYLYDG----GETVKLNREPI-NSVLDPHYGVG--RVILVRDVS----KGAEQHALFKVNTSRPGEE-QRLEAVKP- 111 (582)
T ss_dssp EEEEEEEET----TEEEECCSSCC-SEECEECTTCS--EEEEEEECS----TTSCCEEEEEEETTSTTCC-EECTTSCS-
T ss_pred ceeEEEEcC----CCcEeeecccc-cccccccCCCC--eEEEEeccC----CCCcceEEEEEeccCCCcc-ccccCCCC-
Confidence 355666777 88999884332 25789999999 688876421 1134568999998 5544 47765543
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
....+|||||+.++|.+... ..+++++
T Consensus 112 -----~~~~~~s~dg~~~~~~s~~~------------------------------------------------~~~~l~d 138 (582)
T 3o4h_A 112 -----MRILSGVDTGEAVVFTGATE------------------------------------------------DRVALYA 138 (582)
T ss_dssp -----BEEEEEEECSSCEEEEEECS------------------------------------------------SCEEEEE
T ss_pred -----ceeeeeCCCCCeEEEEecCC------------------------------------------------CCceEEE
Confidence 34569999999988875421 1233557
Q ss_pred C-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 164 ~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
+ +|+.++++.... ..++|||||++|++.+.+.. ....||+||+++++.++|+.....
T Consensus 139 ~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~---------~~~~i~~~d~~~g~~~~l~~~~~~------------ 196 (582)
T 3o4h_A 139 LDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGG---------GRVSLFTSNLSSGGLRVFDSGEGS------------ 196 (582)
T ss_dssp EETTEEEEEEEESS-CEEEEEEETTEEEEEEEEET---------TEEEEEEEETTTCCCEEECCSSCE------------
T ss_pred ccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCC---------CCeEEEEEcCCCCCceEeecCCCc------------
Confidence 7 677777775533 78999999999998776532 024699999998888877554332
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EE--------EecCCceEE
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VS--------WCDDSLALV 313 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~spdg~~l~ 313 (751)
+..++|||||+. |+..+ . ....+|++++++ ++..+.+......+. +. ||||| .++
T Consensus 197 -~~~~~~SpDG~~-l~~~~-~---------~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 197 -FSSASISPGMKV-TAGLE-T---------AREARLVTVDPR---DGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp -EEEEEECTTSCE-EEEEE-C---------SSCEEEEEECTT---TCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred -cccceECCCCCE-EEEcc-C---------CCeeEEEEEcCC---CCcEEEccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 347899999998 66322 1 112379999986 555554333333344 55 99999 677
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
++...+ +...||.+ +. ........... ++|| ||+.++..+.. ...
T Consensus 261 ~~~~~~-g~~~l~~~---g~---~~~~~~~~v~~---------~~~s-dg~~l~~~s~~------------------~~p 305 (582)
T 3o4h_A 261 VVARRE-GRSAVFID---GE---RVEAPQGNHGR---------VVLW-RGKLVTSHTSL------------------STP 305 (582)
T ss_dssp EEEEET-TEEEEEET---TE---EECCCSSEEEE---------EEEE-TTEEEEEEEET------------------TEE
T ss_pred EEEEcC-CcEEEEEE---CC---eeccCCCceEE---------EEec-CCEEEEEEcCC------------------CCC
Confidence 766443 34567766 31 11111111111 7799 99877665522 234
Q ss_pred ceeEEEecCCCceeEE
Q 004475 394 PFLDLFDINTGSKERI 409 (751)
Q Consensus 394 ~~l~~~d~~~g~~~~l 409 (751)
..|+++++.+ +.++|
T Consensus 306 ~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 306 PRIVSLPSGE-PLLEG 320 (582)
T ss_dssp EEEEEETTCC-EEECC
T ss_pred CeEEEEcCCC-ceEEE
Confidence 4788888765 54444
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=170.44 Aligned_cols=279 Identities=13% Similarity=0.155 Sum_probs=181.7
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|++|+..+ ...+.+.+ ....+...+|||||+.|+... ....|.+++..+.+.+.+.....
T Consensus 285 ~i~~w~~~~----~~~~~~~~--h~~~v~~~~~~~~~~~l~t~~----------~d~~i~~w~~~~~~~~~~~~~~~--- 345 (577)
T 2ymu_A 285 TVKLWNRNG----QLLQTLTG--HSSSVWGVAFSPDGQTIASAS----------DDKTVKLWNRNGQHLQTLTGHSS--- 345 (577)
T ss_dssp CEEEEETTS----CEEEEECC--CSSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTSCEEEEECCCSS---
T ss_pred EEEEEeCCC----cEEEEEec--CCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCeeEEEeCCCC---
Confidence 577888755 44444542 223577889999999998864 23567777877766666643332
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
.+..++|+|||+.|+....+ ..+.+++.+
T Consensus 346 --~v~~~~~s~~g~~l~~~~~d-------------------------------------------------g~v~~~~~~ 374 (577)
T 2ymu_A 346 --SVWGVAFSPDGQTIASASDD-------------------------------------------------KTVKLWNRN 374 (577)
T ss_dssp --CEEEEEECTTSSEEEEEETT-------------------------------------------------SEEEEEETT
T ss_pred --CEEEEEECCCCCEEEEEeCC-------------------------------------------------CEEEEEcCC
Confidence 36788999999999887432 356667776
Q ss_pred C-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 166 G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+ ....+..+ ..+..++|||||++|+....+ ..+.+|+..+...+.+..+. ..
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~-------------~~ 428 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SS 428 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------SEEEEECTTCCEEEEEECCS-------------SC
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC-------------CEEEEEeCCCCEEEEecCCC-------------CC
Confidence 6 34445544 678899999999999876543 35888998766555543322 23
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..++|+||++. |+..+ ..+.|.+++.. +.....+......+. ++|||||+.|+.... .
T Consensus 429 v~~~~~s~d~~~-l~~~~------------~d~~v~~w~~~---~~~~~~~~~~~~~v~~~~~spd~~~las~~~----d 488 (577)
T 2ymu_A 429 VWGVAFSPDDQT-IASAS------------DDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASD----D 488 (577)
T ss_dssp EEEEEECTTSSE-EEEEE------------TTSEEEEEETT---SCEEEEEECCSSCEEEEEECTTSCEEEEEET----T
T ss_pred eEEEEECCCCCE-EEEEc------------CCCEEEEEECC---CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC----C
Confidence 557899999998 55543 23578888874 545556666667777 999999999887652 2
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..|.+.+.++ ...+.+. .....+.. ++|||||++|+..+.+ ..|++||..
T Consensus 489 ~~i~iw~~~~--~~~~~~~-~h~~~v~~------l~~s~dg~~l~s~~~d---------------------g~v~lwd~~ 538 (577)
T 2ymu_A 489 KTVKLWNRNG--QLLQTLT-GHSSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRN 538 (577)
T ss_dssp SEEEEEETTS--CEEEEEE-CCSSCEEE------EEECTTSSCEEEEETT---------------------SEEEEECTT
T ss_pred CEEEEEcCCC--CEEEEEe-CCCCCEEE------EEEcCCCCEEEEEECc---------------------CEEEEEeCC
Confidence 3455556544 2222232 22222222 7899999999887732 268888974
Q ss_pred CCce-eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 403 TGSK-ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 403 ~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
++. ..+..... .+.. ++|||||+.|+-.
T Consensus 539 -~~~~~~~~~h~~-----~v~~-------~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 539 -GQLLQTLTGHSS-----SVWG-------VAFSPDGQTIASA 567 (577)
T ss_dssp -SCEEEEEECCSS-----CEEE-------EEECTTSSCEEEE
T ss_pred -CCEEEEEcCCCC-----CEEE-------EEEcCCCCEEEEE
Confidence 443 33322221 1222 5899999987643
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=160.27 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=134.6
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCC--C-CchHHHHHHhC---
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG--M-TPTSSLIFLAR--- 553 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~--- 553 (751)
..+.+++.+.++ .+.+++|+|+++.+. +++|+||++||++... ..+.. . .......|+++
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~~~~--~~~Pvlv~lHG~~~~~-----------~~~~~~~~~~~~~~~~l~~~g~~ 105 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGYDPN--KKYNIFYLMHGGGENE-----------NTIFSNDVKLQNILDHAIMNGEL 105 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTT--SCCEEEEEECCTTCCT-----------TSTTSTTTCHHHHHHHHHHTTSS
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCCCCC--CCCCEEEEECCCCCCc-----------chhhcccchHHHHHHHHHHcCCC
Confidence 467888887765 899999999987653 3599999999975211 11111 0 11334566666
Q ss_pred -CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCC------------CCCCcEEEEEeChHHHHHHHHHH
Q 004475 554 -RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGV------------ADPSRIAVGGHSYGAFMTAHLLA 620 (751)
Q Consensus 554 -G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~------------id~~~i~l~G~S~GG~~a~~~a~ 620 (751)
+|+|++++.++.. .....+...+.+++. .++.+... .|+.+++|+|+||||++|+.++.
T Consensus 106 ~~~ivv~pd~~~~~-----~~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~ 177 (297)
T 1gkl_A 106 EPLIVVTPTFNGGN-----CTAQNFYQEFRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMV 177 (297)
T ss_dssp CCEEEEECCSCSTT-----CCTTTHHHHHHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHH
T ss_pred CCEEEEEecCcCCc-----cchHHHHHHHHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHH
Confidence 5999996654221 122334444445444 44444322 36678999999999999999999
Q ss_pred hCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 621 HAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 621 ~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
++|++|+++++++|.+...... . ........+.. ...+.....++++.+|+.|.. ...++++.++|
T Consensus 178 ~~p~~f~~~v~~sg~~~~~~~~-----~--~~~~~~~~~~~---~~~~~~~~~~l~~~~G~~D~~----~~~~~~l~~~L 243 (297)
T 1gkl_A 178 NCLDYVAYFMPLSGDYWYGNSP-----Q--DKANSIAEAIN---RSGLSKREYFVFAATGSEDIA----YANMNPQIEAM 243 (297)
T ss_dssp HHTTTCCEEEEESCCCCBSSSH-----H--HHHHHHHHHHH---HHTCCTTSCEEEEEEETTCTT----HHHHHHHHHHH
T ss_pred hCchhhheeeEeccccccCCcc-----c--hhhhHHHHHHh---hccCCcCcEEEEEEeCCCccc----chhHHHHHHHH
Confidence 9999999999999975422100 0 00001111111 111223346778889999976 56788999999
Q ss_pred HhCC----------CcEEEEEeCCCCCcC
Q 004475 701 KGHG----------ALSRLVLLPFEHHVY 719 (751)
Q Consensus 701 ~~~~----------~~~~~~~~~~~~H~~ 719 (751)
++.+ .++++.++|+++|.+
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 244 KALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp HTSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHcCCccccccccCCceEEEECCCCCcCH
Confidence 9988 589999999999975
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-16 Score=164.07 Aligned_cols=286 Identities=12% Similarity=-0.007 Sum_probs=158.6
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+|+++.++. .+|+.+.+............+|||||+ |+++... .....|+++++++++.+++.......
T Consensus 17 ~i~v~~~d~--~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~- 85 (347)
T 3hfq_A 17 GIYQGTLDT--TAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPG- 85 (347)
T ss_dssp EEEEEEEET--TTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCC-
Confidence 466666654 448777655333333567889999999 7665421 23478999999888877765421110
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
.....++|||||++|++..... ..-.+|.++.+
T Consensus 86 -~~p~~~a~spdg~~l~~~~~~~----------------------------------------------~~v~v~~~~~~ 118 (347)
T 3hfq_A 86 -TPPAYVAVDEARQLVYSANYHK----------------------------------------------GTAEVMKIAAD 118 (347)
T ss_dssp -CCCSEEEEETTTTEEEEEETTT----------------------------------------------TEEEEEEECTT
T ss_pred -CCCEEEEECCCCCEEEEEeCCC----------------------------------------------CEEEEEEeCCC
Confidence 1246789999999998874311 00233433334
Q ss_pred CCceecCC------------C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCC
Q 004475 166 GTAKDFGT------------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAE 231 (751)
Q Consensus 166 G~~~~lt~------------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~ 231 (751)
|..+.+.. . ..+..++|||||+ +++.... ...+++|+++ +++...+......
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~- 184 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG------------SDKVYVYNVSDAGQLSEQSVLTME- 184 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT------------TTEEEEEEECTTSCEEEEEEEECC-
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC------------CCEEEEEEECCCCcEEEeeeEEcC-
Confidence 43332211 0 2356799999999 6665332 2368888887 4544433211111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---ec------eeEE
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD------LRFS 302 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~------~~~~ 302 (751)
...+++.++|+|||++ ++++.. ..+.+.+++++.. ++....+.. .. ....
T Consensus 185 --------~g~~p~~~~~spdg~~-l~v~~~-----------~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 185 --------AGFGPRHLVFSPDGQY-AFLAGE-----------LSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp --------TTCCEEEEEECTTSSE-EEEEET-----------TTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEE
T ss_pred --------CCCCCceEEECCCCCE-EEEEeC-----------CCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcce
Confidence 1123457899999998 666431 1235566655311 122222211 11 2345
Q ss_pred -EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 303 -VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
++|||||++|+++... . ..|.+++++.. +..+.+........ ....++|||||++|++...+
T Consensus 244 ~i~~spdG~~l~v~~~~-~--~~v~v~~~~~~-g~~~~~~~~~~~~~----~~~~~~~spdg~~l~v~~~~--------- 306 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRG-Y--NTLAVFAVTAD-GHLTLIQQISTEGD----FPRDFDLDPTEAFVVVVNQN--------- 306 (347)
T ss_dssp EEEECTTSCEEEEEEET-T--TEEEEEEECGG-GCEEEEEEEECSSS----CCCEEEECTTSSEEEEEETT---------
T ss_pred eEEECCCCCEEEEEeCC-C--CEEEEEEECCC-CcEEEeEEEecCCC----CcCeEEECCCCCEEEEEEcC---------
Confidence 8999999988765532 2 34445554321 12223222111100 11128899999999887721
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.....+|.+|.++|+.+.+-
T Consensus 307 ---------~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 307 ---------TDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp ---------TTEEEEEEECTTTCCEEEEE
T ss_pred ---------CCcEEEEEEeCCCCeEEecc
Confidence 12234555588888877653
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=161.81 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=151.9
Q ss_pred CCceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 478 SLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 478 ~~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
....+.+++.+. .+..+.++ |+|++ .|+||++||++.. +....|... ......++++||+
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~--------~p~vvllHG~~~~---------~~~~~w~~~-~~~~~~~~~~~~~ 68 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG--------PHAVYLLDAFNAG---------PDVSNWVTA-GNAMNTLAGKGIS 68 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS--------SSEEEEECCSSCC---------SSSCHHHHT-SCHHHHHTTSSSE
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC--------CCEEEEECCCCCC---------CChhhhhhc-ccHHHHHhcCCeE
Confidence 345778888764 56788888 77864 2799999997410 000111110 0123456678999
Q ss_pred EEEcCCCCCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 557 VLAGPSIPIIGEGD--KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 557 v~~~~~~~~~g~g~--~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
|++++.....++.. ......+.....+| ++.++.++..+++++++|+|+||||++|+.++.++|++|+++++++|
T Consensus 69 vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg 145 (280)
T 1r88_A 69 VVAPAGGAYSMYTNWEQDGSKQWDTFLSAE---LPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 145 (280)
T ss_dssp EEEECCCTTSTTSBCSSCTTCBHHHHHHTH---HHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred EEEECCCCCCccCCCCCCCCCcHHHHHHHH---HHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC
Confidence 99976633222211 11112233333344 44455454447778999999999999999999999999999999999
Q ss_pred CCCCCCCccC------ccc----ccccchhh--HHHHHhcCcccccCCC---CCCEEEEE----cCCCCC-------CCC
Q 004475 635 SYNKTLTPFG------FQT----EFRTLWEA--TNVYIEMSPITHANKI---KKPILIIH----GEVDDK-------VGL 688 (751)
Q Consensus 635 ~~d~~~~~~~------~~~----~~~~~~~~--~~~~~~~~~~~~~~~~---~~P~li~~----G~~D~~-------vp~ 688 (751)
.++....... ... .....|.. ...+.+.+|..+++++ ++|+++.| |+.|.. ++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~- 224 (280)
T 1r88_A 146 FLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEA- 224 (280)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHH-
T ss_pred ccCcCCccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHH-
Confidence 8764321000 000 00000111 1233445565545444 58999999 999983 56
Q ss_pred ChHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 689 FPMQAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
...+++++++|++.+ .++++.++++++|.+. .+...+...+.||.+-+.
T Consensus 225 -~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 225 -MGNSRMFYNQYRSVGGHNGHFDFPASGDNGWG---SWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp -HHHHHHHHHHHHHTTCCSEEEECCSSCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHCCCcceEEEecCCCCcChh---HHHHHHHHHHHHHHHHHh
Confidence 899999999999999 9999999988899853 355666777788776654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-15 Score=160.40 Aligned_cols=324 Identities=10% Similarity=0.030 Sum_probs=194.5
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc-c
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-C 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~-~ 84 (751)
.||+++..+ +..+.+..++.+......+||| +..++++. .....|+++++++++..+....... .
T Consensus 102 ~l~~~d~~~----~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~---------~~~~~i~~~d~~~g~~~~~~~~~~~~~ 167 (433)
T 3bws_A 102 KLIALDKEG----ITHRFISRFKTGFQPKSVRFID-NTRLAIPL---------LEDEGMDVLDINSGQTVRLSPPEKYKK 167 (433)
T ss_dssp CEEECCBTT----CSEEEEEEEECSSCBCCCEESS-SSEEEEEB---------TTSSSEEEEETTTCCEEEECCCHHHHT
T ss_pred EEEEECCCC----CcceEEEEEcCCCCceEEEEeC-CCeEEEEe---------CCCCeEEEEECCCCeEeeecCcccccc
Confidence 566666655 5444444333444466899999 55666654 3345799999999887664322110 0
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....+..++|+|+|+.++....+ ..|+++++
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d-------------------------------------------------~~v~~~d~ 198 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQA-------------------------------------------------NAVHVFDL 198 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGG-------------------------------------------------TEEEEEET
T ss_pred cCCceeEEEEcCCCEEEEEECCC-------------------------------------------------CEEEEEEC
Confidence 01136678999999866655221 47888888
Q ss_pred -CCCc-eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 165 -DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 -~G~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+++. ..+..+ ..+..++|+|||++|++.... ...|++||+.+++........
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~i~~~d~~~~~~~~~~~~~------------- 253 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI------------SEDISVIDRKTKLEIRKTDKI------------- 253 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT------------TTEEEEEETTTTEEEEECCCC-------------
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC------------CCcEEEEECCCCcEEEEecCC-------------
Confidence 5533 344433 667899999999999877532 346899999877554332211
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
..+..++|+|||+. ++......+... ...+.|+++++. ++............. +.|+|||+.|+++..
T Consensus 254 ~~~~~~~~~~~g~~-l~~~~~~~~~~~----~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--- 322 (433)
T 3bws_A 254 GLPRGLLLSKDGKE-LYIAQFSASNQE----SGGGRLGIYSMD---KEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--- 322 (433)
T ss_dssp SEEEEEEECTTSSE-EEEEEEESCTTC----SCCEEEEEEETT---TTEEEEEEEEEECEEEEEECSSTTEEEEEET---
T ss_pred CCceEEEEcCCCCE-EEEEECCCCccc----cCCCeEEEEECC---CCcEEeeccCCCCcceEEECCCCCEEEEEec---
Confidence 12458899999998 555542211100 123589999985 333333333344556 899999998877652
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCc-ceEEEEccCCCCCCCCCceeEEE
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE-QIYILLNGRGFTPEGNIPFLDLF 399 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 399 (751)
....|+++++.++ +........ ..... ++|+|||+.|++.....+.. ..++ ........|++|
T Consensus 323 ~~~~v~v~d~~~~--~~~~~~~~~-~~~~~------~~~s~dg~~l~~~~~~~~~~~~~~~-------~~g~~dg~v~~~ 386 (433)
T 3bws_A 323 CCSKIEVYDLKEK--KVQKSIPVF-DKPNT------IALSPDGKYLYVSCRGPNHPTEGYL-------KKGLVLGKVYVI 386 (433)
T ss_dssp TTTEEEEEETTTT--EEEEEEECS-SSEEE------EEECTTSSEEEEEECCCCCTTTCTT-------SCCSSCCEEEEE
T ss_pred CCCEEEEEECCCC--cEEEEecCC-CCCCe------EEEcCCCCEEEEEecCCCccccccc-------cccccceEEEEE
Confidence 2357888888774 222222211 11111 78999999888877321100 0000 001123479999
Q ss_pred ecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 400 DINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 400 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
|+.+++......... .+ ..++|+|||+.|+..... -..+++++++
T Consensus 387 d~~~~~~~~~~~~~~-----~~-------~~~~~s~dg~~l~~~~~~---d~~i~v~~~~ 431 (433)
T 3bws_A 387 DTTTDTVKEFWEAGN-----QP-------TGLDVSPDNRYLVISDFL---DHQIRVYRRD 431 (433)
T ss_dssp ETTTTEEEEEEECSS-----SE-------EEEEECTTSCEEEEEETT---TTEEEEEEET
T ss_pred ECCCCcEEEEecCCC-----CC-------ceEEEcCCCCEEEEEECC---CCeEEEEEec
Confidence 999887765544321 12 235899999988776432 2457777654
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=159.54 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh
Q 004475 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE 661 (751)
Q Consensus 582 ~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 661 (751)
.+.+...++...+. .++++||++.|+|+||.+|+.++.++|+.++++++++|...... .+..
T Consensus 114 ~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~-----------------~~~~ 175 (246)
T 4f21_A 114 IAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWD-----------------NFKG 175 (246)
T ss_dssp HHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHH-----------------HHST
T ss_pred HHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccc-----------------cccc
Confidence 33444444444443 58999999999999999999999999999999999999642100 0000
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.. .....++|+|++||+.|++|| +..++++++.|++.|.++++..||+.+|.+.. +.++.+.+||.+.|+
T Consensus 176 --~~-~~~~~~~Pvl~~HG~~D~vVp--~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~-----~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 176 --KI-TSINKGLPILVCHGTDDQVLP--EVLGHDLSDKLKVSGFANEYKHYVGMQHSVCM-----EEIKDISNFIAKTFK 245 (246)
T ss_dssp --TC-CGGGTTCCEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEESSCCSSCCH-----HHHHHHHHHHHHHTT
T ss_pred --cc-cccccCCchhhcccCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCccCH-----HHHHHHHHHHHHHhC
Confidence 00 011236899999999999999 99999999999999999999999999998752 557789999999885
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=182.39 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=161.8
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeEEEE
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVLA 559 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~v~~ 559 (751)
.+.+.++..+|..+.+.+|.|.+ .+++|+||++||.|.... ....+ ...+ ..|+++||+|+.
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~-----~~~~P~vv~~~~~g~~~~-----------~~~~y-~~~~~~~la~~Gy~vv~ 71 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDV-----------FAWST-QSTNWLEFVRDGYAVVI 71 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCH-----------HHHHT-TTCCTHHHHHTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEEEECCC-----CCCeeEEEEECCcCCCcc-----------ccccc-hhhHHHHHHHCCCEEEE
Confidence 46788999999999999999975 336899999998642110 00000 0123 678999999999
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC-CCC
Q 004475 560 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YNK 638 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~-~d~ 638 (751)
.+.+|+|.+...........+|+.++++||.++++.+ .+|+++|+||||++++.+|+..|+.++++|+.++. .+.
T Consensus 72 ---~D~RG~G~S~g~~~~~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~ 147 (587)
T 3i2k_A 72 ---QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLY 147 (587)
T ss_dssp ---EECTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTC
T ss_pred ---EcCCCCCCCCCccccccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccc
Confidence 5556666664432223457899999999999887665 79999999999999999999998999999999988 664
Q ss_pred CCCc---cCcccc-cccchh------------------------------------------------------------
Q 004475 639 TLTP---FGFQTE-FRTLWE------------------------------------------------------------ 654 (751)
Q Consensus 639 ~~~~---~~~~~~-~~~~~~------------------------------------------------------------ 654 (751)
.... .+.... ....|.
T Consensus 148 ~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3i2k_A 148 RAPWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVD 227 (587)
T ss_dssp CCCCSCTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTT
T ss_pred ccceeecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhc
Confidence 3211 010000 000000
Q ss_pred ---hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc---------c
Q 004475 655 ---ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA---------R 722 (751)
Q Consensus 655 ---~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---------~ 722 (751)
....|...++...+++|++|+|+++|..|..+ ..+.+++++|+..++ .++++-|.. |.... .
T Consensus 228 ~~~~d~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~----~~~~~~~~~l~~~~~-~~L~iGPw~-H~~~~~~~g~~~~g~ 301 (587)
T 3i2k_A 228 HPDNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKDNAD-ARLVVGPWS-HSNLTGRNADRKFGI 301 (587)
T ss_dssp CCSCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTTTSC-EEEEEEEEE-TTBCSSEETTEECCG
T ss_pred CCCCChHHhcCChhhhhccCCCCEEEEccCCCccc----hHHHHHHHHHhhcCC-CEEEECCcc-ccCccccCCCcccCC
Confidence 01123344555567899999999999999874 457788999987654 367776654 65311 1
Q ss_pred cc---HHHHHHHHHHHHHHHhcCC
Q 004475 723 EN---VMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 723 ~~---~~~~~~~~~~fl~~~l~~~ 743 (751)
.. ..+..+.+++||+++|+..
T Consensus 302 ~~~~~~~~~~~~~~~wFD~~Lkg~ 325 (587)
T 3i2k_A 302 AATYPIQEATTMHKAFFDRHLRGE 325 (587)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccccccchhhHHHHHHHHHHhcCC
Confidence 11 1233488999999999854
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=157.07 Aligned_cols=274 Identities=9% Similarity=-0.038 Sum_probs=166.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~ 82 (751)
..|.++|+.+ |+.......+.. .. .++|||||++|+++. .....|+++++++++. +.+..+..
T Consensus 20 ~~v~~~d~~~----~~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~---------~~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 20 RRISFFSTDT----LEILNQITLGYD-FV-DTAITSDCSNVVVTS---------DFCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp TEEEEEETTT----CCEEEEEECCCC-EE-EEEECSSSCEEEEEE---------STTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CeEEEEeCcc----cceeeeEEccCC-cc-eEEEcCCCCEEEEEe---------CCCCeEEEEECCCCceeEEecccCCC
Confidence 4799999988 888765543322 34 899999999887765 3346999999998874 33332221
Q ss_pred ccccceeee-eEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 ICLNAVFGS-FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~~~~~~~~-~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
... ++|||||++|+ ....... ...|++
T Consensus 85 ------~~~~~~~s~dg~~l~-~~~~~~~---------------------------------------------~~~i~v 112 (331)
T 3u4y_A 85 ------SMADVDITPDDQFAV-TVTGLNH---------------------------------------------PFNMQS 112 (331)
T ss_dssp ------CCCCEEECTTSSEEE-ECCCSSS---------------------------------------------SCEEEE
T ss_pred ------CccceEECCCCCEEE-EecCCCC---------------------------------------------cccEEE
Confidence 244 89999999998 4221100 027889
Q ss_pred EcC-CCCce-ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCcee-EEEEeCCCc-eeeeeccCCCCCCCCCcc
Q 004475 162 GSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK-VQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 162 ~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~-l~~~d~~~~-~~~~l~~~~~~~~~~~~~ 237 (751)
+++ +++.. .+........++|+|||++|++..... .. +++|+++.. .........
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~--------- 171 (331)
T 3u4y_A 113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEF--------- 171 (331)
T ss_dssp EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEE---------
T ss_pred EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCcc---------
Confidence 998 66443 333335567899999999988875442 23 667776532 111110000
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc---eEeEeeceeEE-EEEecCCceEE
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
.......+.++|+|||++ ++++.. ..+.|++++++ .+.. ........... +.|||||++|+
T Consensus 172 ~~~~~~~~~~~~spdg~~-l~v~~~-----------~~~~v~v~d~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNF-AFVANL-----------IGNSIGILETQ---NPENITLLNAVGTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp ECSSSSEEEEEECTTSSE-EEEEET-----------TTTEEEEEECS---STTSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred ccCCCCccceEECCCCCE-EEEEeC-----------CCCeEEEEECC---CCcccceeeeccCCCCCceEEECCCCCEEE
Confidence 011123568999999998 555431 23578888875 3332 22222233445 89999999887
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccc----cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE----NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
++.. ....|+++++.++ +.+.+...... .... .....++|||||++|++...
T Consensus 237 v~~~---~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~------------------ 292 (331)
T 3u4y_A 237 VLTE---STVDVFNFNQLSG--TLSFVKSFGHGLLIDPRPL-FGANQMALNKTETKLFISAN------------------ 292 (331)
T ss_dssp EECS---SEEEEEEEETTTT--EEEEEEEEECCCCCCCGGG-TTCCCEEECTTSSEEEEEET------------------
T ss_pred EEEc---CCCEEEEEECCCC--ceeeecccccccccCCCCc-ccccceEECCCCCEEEEecC------------------
Confidence 7652 2356888998874 22222111100 0000 01122689999999988772
Q ss_pred CCCCceeEEEecCCCcee
Q 004475 390 EGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 390 ~~~~~~l~~~d~~~g~~~ 407 (751)
....|.+||+++....
T Consensus 293 --~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 293 --ISRELKVFTISGKVVG 308 (331)
T ss_dssp --TTTEEEEEETTSCEEE
T ss_pred --CCCcEEEEEecCCccc
Confidence 2347888999765443
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=158.28 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=135.3
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+- . .|.||++||.+. +...| ......|+++||.|++ ++.
T Consensus 3 ~~~~~g~~l~y~~~G-~---------g~~vvllHG~~~-----------~~~~w----~~~~~~l~~~g~~vi~---~D~ 54 (271)
T 3ia2_A 3 FVAKDGTQIYFKDWG-S---------GKPVLFSHGWLL-----------DADMW----EYQMEYLSSRGYRTIA---FDR 54 (271)
T ss_dssp EECTTSCEEEEEEES-S---------SSEEEEECCTTC-----------CGGGG----HHHHHHHHTTTCEEEE---ECC
T ss_pred EEcCCCCEEEEEccC-C---------CCeEEEECCCCC-----------cHHHH----HHHHHHHHhCCceEEE---ecC
Confidence 455678777766652 1 256899999641 11111 1345577789999999 666
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEccCCCCCCCC-
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTLT- 641 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~d~~~~- 641 (751)
+|+|.+... ........+|+.++++.+ +.+++.++||||||.+++.+++. .|++++++|+.++.......
T Consensus 55 ~G~G~S~~~~~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~ 128 (271)
T 3ia2_A 55 RGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQK 128 (271)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCB
T ss_pred CCCccCCCCCCCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCC
Confidence 788777532 233566778888877776 23689999999999877666655 48999999998864321100
Q ss_pred ---ccCccccc-----cc--------------ch----------h--------------------hHHHHHhcCcccccC
Q 004475 642 ---PFGFQTEF-----RT--------------LW----------E--------------------ATNVYIEMSPITHAN 669 (751)
Q Consensus 642 ---~~~~~~~~-----~~--------------~~----------~--------------------~~~~~~~~~~~~~~~ 669 (751)
+....... .. .+ . ....+........+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (271)
T 3ia2_A 129 PDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMA 208 (271)
T ss_dssp TTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHT
T ss_pred CCCcccccHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCccccc
Confidence 00000000 00 00 0 000001111223357
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
++++|+|+++|++|.++| +..+.++...+. ...+++++++++|.+. .+..+++.+.+.+||.
T Consensus 209 ~i~~P~Lvi~G~~D~~~p--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 209 KIDVPTLVIHGDGDQIVP--FETTGKVAAELI---KGAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp TCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcCC--hHHHHHHHHHhC---CCceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 899999999999999998 776555544432 3468999999999876 5667888999999985
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-15 Score=152.74 Aligned_cols=295 Identities=9% Similarity=-0.007 Sum_probs=173.8
Q ss_pred ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC
Q 004475 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (751)
Q Consensus 35 ~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 114 (751)
.+.|++++++++.+. .....|.++++++++.......... .. .++|||||++|++....
T Consensus 2 ~~~~~~~~~~~~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~~~~------- 60 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVE---------QHLRRISFFSTDTLEILNQITLGYD----FV-DTAITSDCSNVVVTSDF------- 60 (331)
T ss_dssp -----CCCCEEEEEE---------GGGTEEEEEETTTCCEEEEEECCCC----EE-EEEECSSSCEEEEEEST-------
T ss_pred ceeEcCCCCEEEEEe---------cCCCeEEEEeCcccceeeeEEccCC----cc-eEEEcCCCCEEEEEeCC-------
Confidence 356788887766543 3457999999999987655443321 24 78999999988887431
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC--ceecCCCceEEe-eeeCCCCceEE
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTA-VEPSPDQKYVL 190 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~--~~~lt~~~~~~~-~~~SpDG~~i~ 190 (751)
...|+++|+ +++ .+.+..+..... ++|||||++|+
T Consensus 61 -----------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 99 (331)
T 3u4y_A 61 -----------------------------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99 (331)
T ss_dssp -----------------------------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred -----------------------------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence 147899999 665 344443344445 89999999998
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~ 270 (751)
...... ....|++||+++++........ .....++|+|||++ ++++...
T Consensus 100 -~~~~~~---------~~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~-l~~~~~~------- 148 (331)
T 3u4y_A 100 -TVTGLN---------HPFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNG-LILIDRS------- 148 (331)
T ss_dssp -ECCCSS---------SSCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSC-EEEEEET-------
T ss_pred -EecCCC---------CcccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCE-EEEEecC-------
Confidence 332210 0127999999877654432211 12357899999998 6665421
Q ss_pred ccCcccc-eeeccCCCCCCCCce----EeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc--eeeee
Q 004475 271 EVSPRDI-IYTQPAEPAEGEKPE----ILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP--RVLFD 342 (751)
Q Consensus 271 ~~~~~~~-l~~~~~~~~~~~~~~----~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~ 342 (751)
.+. +++++++. .+... .......... +.|+|||++|+++.. ....|+++++.++ ... .....
T Consensus 149 ----~~~~i~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~-~~~~~~~~~~ 218 (331)
T 3u4y_A 149 ----SANTVRRFKIDA--DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNP-ENITLLNAVG 218 (331)
T ss_dssp ----TTTEEEEEEECT--TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSST-TSCEEEEEEE
T ss_pred ----CCceEEEEEECC--CCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCC-cccceeeecc
Confidence 134 66666641 12221 1112222345 899999998877652 2346888888775 221 11122
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhcee
Q 004475 343 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 422 (751)
Q Consensus 343 ~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 422 (751)
.. .. ...++|+|||++|++... ....|++||+++++.+.+......... ..
T Consensus 219 ~~-~~------~~~~~~spdg~~l~v~~~--------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~ 269 (331)
T 3u4y_A 219 TN-NL------PGTIVVSRDGSTVYVLTE--------------------STVDVFNFNQLSGTLSFVKSFGHGLLI--DP 269 (331)
T ss_dssp CS-SC------CCCEEECTTSSEEEEECS--------------------SEEEEEEEETTTTEEEEEEEEECCCCC--CC
T ss_pred CC-CC------CceEEECCCCCEEEEEEc--------------------CCCEEEEEECCCCceeeeccccccccc--CC
Confidence 11 11 112889999998877652 123688899998877544322110000 00
Q ss_pred eeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 423 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 423 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
........++|||||++|+++... ...+.++|+.+....
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANI---SRELKVFTISGKVVG 308 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETT---TTEEEEEETTSCEEE
T ss_pred CCcccccceEECCCCCEEEEecCC---CCcEEEEEecCCccc
Confidence 000111236899999998877532 356889998765433
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-15 Score=157.00 Aligned_cols=269 Identities=9% Similarity=0.022 Sum_probs=177.6
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.....|+++++++++..+...... .+..++|+|||++|++....
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~------------------------------- 52 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAH------------------------------- 52 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGG-------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEeecCC-----CcceEEECCCCCEEEEECCC-------------------------------
Confidence 445789999999887665544333 35788999999998776321
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
...|+++|+ +|+.. .+..+..+..++|+|||++|++.... ...|++||+
T Consensus 53 -----------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~------------~~~v~v~d~ 103 (391)
T 1l0q_A 53 -----------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------------SSTLSVIDT 103 (391)
T ss_dssp -----------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEET
T ss_pred -----------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECC------------CCEEEEEEC
Confidence 147888998 67443 33333677899999999999887533 346999999
Q ss_pred CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe
Q 004475 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
.+++........ ..+..++|+|||++ ++++.. ..+.|+++++. .+.......
T Consensus 104 ~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~~~-----------~~~~v~~~d~~---~~~~~~~~~ 155 (391)
T 1l0q_A 104 TSNTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTNN-----------GDKTVSVINTV---TKAVINTVS 155 (391)
T ss_dssp TTTEEEEEEECS-------------SSEEEEEECTTSSE-EEEEET-----------TTTEEEEEETT---TTEEEEEEE
T ss_pred CCCeEEEEEeCC-------------CCcceEEECCCCCE-EEEEeC-----------CCCEEEEEECC---CCcEEEEEe
Confidence 987655433221 23458899999998 655431 23589999985 333333333
Q ss_pred eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 297 LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
...... +.|+|||+.|+++.. ....|+++++.++ .......... .... ++|+|||+.|++...+
T Consensus 156 ~~~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~--~~~~~~~~~~-~~~~------~~~~~~g~~l~~~~~~--- 220 (391)
T 1l0q_A 156 VGRSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTN--SVIDTVKVEA-APSG------IAVNPEGTKAYVTNVD--- 220 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEET---TTTEEEEEETTTT--EEEEEEECSS-EEEE------EEECTTSSEEEEEEEC---
T ss_pred cCCCcceEEECCCCCEEEEEeC---CCCEEEEEECCCC--eEEEEEecCC-Cccc------eEECCCCCEEEEEecC---
Confidence 333446 899999998876542 2357888898774 2233222211 1111 7899999998887731
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEE
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 455 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~ 455 (751)
.....|++||+.+++.......... + ..++|+|||+.|+++... -..+++
T Consensus 221 ---------------~~~~~v~~~d~~~~~~~~~~~~~~~-----~-------~~~~~s~dg~~l~~s~~~---d~~v~v 270 (391)
T 1l0q_A 221 ---------------KYFNTVSMIDTGTNKITARIPVGPD-----P-------AGIAVTPDGKKVYVALSF---XNTVSV 270 (391)
T ss_dssp ---------------SSCCEEEEEETTTTEEEEEEECCSS-----E-------EEEEECTTSSEEEEEETT---TTEEEE
T ss_pred ---------------cCCCcEEEEECCCCeEEEEEecCCC-----c-------cEEEEccCCCEEEEEcCC---CCEEEE
Confidence 1234799999988876544433211 1 235899999988777533 357999
Q ss_pred EEcCCCceeE
Q 004475 456 LSWPLKKSSQ 465 (751)
Q Consensus 456 ~~~~~g~~~~ 465 (751)
+|+.+++...
T Consensus 271 ~d~~~~~~~~ 280 (391)
T 1l0q_A 271 IDTATNTITA 280 (391)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9998887554
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=160.53 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=131.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+ ++...| ......|+++||.|++ ++.+|+|.+... ........+|+.+++
T Consensus 16 ~~~vvllHG~~-----------~~~~~~----~~~~~~L~~~g~~vi~---~D~~GhG~s~~~~~~~~~~~~~~d~~~~~ 77 (247)
T 1tqh_A 16 ERAVLLLHGFT-----------GNSADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 77 (247)
T ss_dssp SCEEEEECCTT-----------CCTHHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCC-----------CChHHH----HHHHHHHHHCCCEEEe---cccCCCCCCHHHhcCCCHHHHHHHHHHHH
Confidence 36799999953 111111 1345567789999999 666788754221 112455667888888
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-c--Ccc---cc----cc-cc--h-hh
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-F--GFQ---TE----FR-TL--W-EA 655 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~--~~~---~~----~~-~~--~-~~ 655 (751)
+++.+.+ .+++.|+||||||.+|+.+|.++| ++++|++++........ . ... .. .. .. . ..
T Consensus 78 ~~l~~~~---~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
T 1tqh_A 78 EFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQE 152 (247)
T ss_dssp HHHHHHT---CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHcC---CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhh
Confidence 8887654 258999999999999999999998 88888765432211000 0 000 00 00 00 0 00
Q ss_pred -----------HHHHHh--cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc
Q 004475 656 -----------TNVYIE--MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 656 -----------~~~~~~--~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 722 (751)
...+.. ......+.++++|+|+++|++|..+| +..++.+++.++. ..++++++|+++|.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e 228 (247)
T 1tqh_A 153 MEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIES--PVKQIKWYEQSGHVITLD 228 (247)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCCC--SSEEEEEETTCCSSGGGS
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCC--cchHHHHHHhcCC--CceEEEEeCCCceeeccC
Confidence 000000 01223467789999999999999998 8888888776643 247999999999998644
Q ss_pred ccHHHHHHHHHHHHHHH
Q 004475 723 ENVMHVIWETDRWLQKY 739 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~ 739 (751)
...+.+.+.+.+||++.
T Consensus 229 ~~~~~~~~~i~~Fl~~~ 245 (247)
T 1tqh_A 229 QEKDQLHEDIYAFLESL 245 (247)
T ss_dssp TTHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 45678999999999753
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=161.82 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=130.0
Q ss_pred EEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc
Q 004475 496 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND 575 (751)
Q Consensus 496 ~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~ 575 (751)
+.+|+|...... .++.|+||++||++.. . .....+...|+++||.|++++++ +.+.
T Consensus 34 ~~~~~p~~~~~~-g~~~p~vv~~HG~~~~-----------~----~~~~~~~~~l~~~G~~v~~~d~~---~s~~----- 89 (258)
T 2fx5_A 34 CRIYRPRDLGQG-GVRHPVILWGNGTGAG-----------P----STYAGLLSHWASHGFVVAAAETS---NAGT----- 89 (258)
T ss_dssp EEEEEESSTTGG-GCCEEEEEEECCTTCC-----------G----GGGHHHHHHHHHHTCEEEEECCS---CCTT-----
T ss_pred EEEEeCCCCccc-CCCceEEEEECCCCCC-----------c----hhHHHHHHHHHhCCeEEEEecCC---CCcc-----
Confidence 788888752211 1258999999997521 1 11224566788899999996664 2211
Q ss_pred hhHHHHHHHHHHHHHHHHHc---------CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc
Q 004475 576 RFVEQLVSSAEAAVEEVVRR---------GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 576 ~~~~~~~~d~~~~v~~l~~~---------~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
.+|+..+++++.+. ..++.++|+++||||||.+|+.++ .+.+++++++++|..... .
T Consensus 90 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~--~---- 155 (258)
T 2fx5_A 90 ------GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL--G---- 155 (258)
T ss_dssp ------SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST--T----
T ss_pred ------HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc--c----
Confidence 12333455555432 245678999999999999999887 446899999988854310 0
Q ss_pred cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHH-HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccH
Q 004475 647 TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ-AERFFDALKGHGALSRLVLLPFEHHVYAARENV 725 (751)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 725 (751)
.....+.++++|+|++||++|.++| ... +.++++. .+.+++++++++++|.+.. +..
T Consensus 156 ----------------~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~ 213 (258)
T 2fx5_A 156 ----------------HDSASQRRQQGPMFLMSGGGDTIAF--PYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSG 213 (258)
T ss_dssp ----------------CCGGGGGCCSSCEEEEEETTCSSSC--HHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTC
T ss_pred ----------------cchhhhccCCCCEEEEEcCCCcccC--chhhHHHHHhc---cCCCeEEEEECCCCCcccc-chH
Confidence 0012356688999999999999998 775 6777665 3467899999999998763 334
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004475 726 MHVIWETDRWLQKYCLS 742 (751)
Q Consensus 726 ~~~~~~~~~fl~~~l~~ 742 (751)
..+.+.+.+||+.++..
T Consensus 214 ~~~~~~i~~fl~~~l~~ 230 (258)
T 2fx5_A 214 GAYRGPSTAWFRFQLMD 230 (258)
T ss_dssp GGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 57888999999988753
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=157.16 Aligned_cols=211 Identities=19% Similarity=0.137 Sum_probs=131.8
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|..+....+-+ + .|.||++||.+. .....| ......|+++||.|++ ++.+|+|
T Consensus 10 ~g~~l~~~~~g~-~--------~~~vvllHG~~~-------------~~~~~~-~~~~~~l~~~g~~vi~---~D~~G~G 63 (254)
T 2ocg_A 10 NGVQLHYQQTGE-G--------DHAVLLLPGMLG-------------SGETDF-GPQLKNLNKKLFTVVA---WDPRGYG 63 (254)
T ss_dssp TTEEEEEEEEEC-C--------SEEEEEECCTTC-------------CHHHHC-HHHHHHSCTTTEEEEE---ECCTTST
T ss_pred CCEEEEEEEecC-C--------CCeEEEECCCCC-------------CCccch-HHHHHHHhhCCCeEEE---ECCCCCC
Confidence 566666554421 1 367999999531 001111 1345566778999999 6667787
Q ss_pred CCCCCc-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------
Q 004475 570 DKLPND-RF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------ 641 (751)
Q Consensus 570 ~~~~~~-~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~------ 641 (751)
.+.... .+ .....+++..+++++.+.+ ..++.++||||||.+|+.+|.++|++++++|+.++.......
T Consensus 64 ~S~~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 140 (254)
T 2ocg_A 64 HSRPPDRDFPADFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYE 140 (254)
T ss_dssp TCCSSCCCCCTTHHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHH
Confidence 764321 11 1112344445555555543 368999999999999999999999999999998874321100
Q ss_pred ---cc-Cccccccc-------------chhh-HHHHHhc-------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 642 ---PF-GFQTEFRT-------------LWEA-TNVYIEM-------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 642 ---~~-~~~~~~~~-------------~~~~-~~~~~~~-------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
.. .+...... .|.. ...+... .....+.++++|+|+++|++|..+| ...++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~ 218 (254)
T 2ocg_A 141 GIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP--RFHADFI 218 (254)
T ss_dssp TTSCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCC--HHHHHHH
Confidence 00 00000000 0000 0000110 1123467789999999999999998 8888777
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+.++ ..+++++|+++|... .+..+.+.+.+.+||
T Consensus 219 ~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 219 HKHVK----GSRLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp HHHST----TCEEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred HHhCC----CCEEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 76654 358999999999876 456778888888887
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-15 Score=157.45 Aligned_cols=288 Identities=10% Similarity=0.069 Sum_probs=163.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||-.+. +...--...|++++..++....-...........+..++|+||++.|+.. .+
T Consensus 44 ~V~~v~fSpDG~~las~s~----d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s-~d---- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASS----LSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS-DS---- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEEC----SSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-TT----
T ss_pred CEEEEEECCCCCEEEEEcC----CCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-CC----
Confidence 5788999999999998653 11111246889998877654322111111112247789999999866533 21
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCcee-----cCCC-ceEEeeeeCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-----FGTP-AVYTAVEPSP 184 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~-----lt~~-~~~~~~~~Sp 184 (751)
..|.++|+ +++... ...+ ..+..++|+|
T Consensus 115 ---------------------------------------------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 115 ---------------------------------------------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp ---------------------------------------------SCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred ---------------------------------------------CEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 35666777 553211 1223 6788999999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
||++|+....+ ..|.+||..+++...... .....+..++|+|+++.+++...
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~------------~h~~~v~~v~~s~~~~~~~~s~~--- 201 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYN------------AHSSEVNCVAACPGKDTIFLSCG--- 201 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTCSSCEEEEE---
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEc------------CCCCCEEEEEEccCCCceeeeec---
Confidence 99999876543 358899998776543211 11233568899999987344433
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+.|.++++.. +.....+. .....+. +.|+|++..++.+.. ....|.++++.++ ......
T Consensus 202 ---------~dg~v~~wd~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~--~~~~~~ 265 (357)
T 4g56_B 202 ---------EDGRILLWDTRK--PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNP--DSAQTS 265 (357)
T ss_dssp ---------TTSCEEECCTTS--SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEEEEESSCG--GGCEEE
T ss_pred ---------cCCceEEEECCC--CceeeeeeeccccccccchhhhhcccceEEEee---cccceeEEECCCC--cEeEEE
Confidence 235688888752 11222221 2334456 899999765443331 2245777777764 223322
Q ss_pred ecccccccCCCCCCCeeeCCCCCE-EEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTN-VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
......+.. ++|||||+. |+..+.+ ..|++||+++++..+...... .
T Consensus 266 ~~~~~~v~~------l~~sp~~~~~lasgs~D---------------------~~i~iwd~~~~~~~~~~~H~~-----~ 313 (357)
T 4g56_B 266 AVHSQNITG------LAYSYHSSPFLASISED---------------------CTVAVLDADFSEVFRDLSHRD-----F 313 (357)
T ss_dssp CCCSSCEEE------EEECSSSSCCEEEEETT---------------------SCEEEECTTSCEEEEECCCSS-----C
T ss_pred eccceeEEE------EEEcCCCCCEEEEEeCC---------------------CEEEEEECCCCcEeEECCCCC-----C
Confidence 222222333 789999864 5555522 268999999887655543221 1
Q ss_pred eeeeecCCcceeecc-CCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 421 AVALVFGQGEEDINL-NQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+.. ++||| |++.|+ +.... +.|.++++.+
T Consensus 314 V~~-------vafsP~d~~~l~-s~s~D---g~v~iW~~~~ 343 (357)
T 4g56_B 314 VTG-------VAWSPLDHSKFT-TVGWD---HKVLHHHLPS 343 (357)
T ss_dssp EEE-------EEECSSSTTEEE-EEETT---SCEEEEECC-
T ss_pred EEE-------EEEeCCCCCEEE-EEcCC---CeEEEEECCC
Confidence 222 58998 666554 43332 3477788754
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=155.57 Aligned_cols=214 Identities=18% Similarity=0.126 Sum_probs=137.5
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+-|++ .|.||++||.+. + ...| ......|+++||.|++ ++.
T Consensus 3 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~-----------~---~~~w-~~~~~~l~~~g~~vi~---~D~ 56 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPL-----------S---ADDW-DNQMLFFLSHGYRVIA---HDR 56 (275)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTC-----------C---GGGG-HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEEcCCCC--------CceEEEECCCCC-----------c---hhhH-HHHHHHHHHCCceEEE---EcC
Confidence 345677778777665532 368999999641 1 1111 2345677889999999 667
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCC-
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLT- 641 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~~- 641 (751)
+|+|.+... ........+|+.++++.+. .+++.++||||||.+|+.+++.+ |++++++|+.++.......
T Consensus 57 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l~------~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 130 (275)
T 1a88_A 57 RGHGRSDQPSTGHDMDTYAADVAALTEALD------LRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKS 130 (275)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHHT------CCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCB
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHcC------CCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccC
Confidence 788877532 2345667788888877762 35799999999999999988776 9999999998864211000
Q ss_pred ---ccCcccc-----------------------c--c-------c-------chhh-----H-------HHHHhcCcccc
Q 004475 642 ---PFGFQTE-----------------------F--R-------T-------LWEA-----T-------NVYIEMSPITH 667 (751)
Q Consensus 642 ---~~~~~~~-----------------------~--~-------~-------~~~~-----~-------~~~~~~~~~~~ 667 (751)
+...... . . . .|.. . ..+........
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (275)
T 1a88_A 131 DTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDD 210 (275)
T ss_dssp TTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccCcccCCHHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccc
Confidence 0000000 0 0 0 0000 0 00011122233
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.++++|+|+++|++|..+| +....+.+..+ ...++++++++++|... .+..+.+.+.+.+||.
T Consensus 211 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 211 LKRIDVPVLVAHGTDDQVVP--YADAAPKSAEL---LANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHH---STTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCCccCC--cHHHHHHHHhh---CCCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 56789999999999999998 66433333222 23579999999999876 5667888999999985
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=177.34 Aligned_cols=247 Identities=13% Similarity=0.133 Sum_probs=159.6
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcc------cC--CCCccCCCCchHHHHH
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQV------RG--SPNEFSGMTPTSSLIF 550 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~ 550 (751)
+..+.+.++..+|.++.+.+|+|.+ .+++|+||+.||.|.........+ .+ ....+..+....+..|
T Consensus 39 ~~~~~v~i~~~DG~~L~a~l~~P~~-----~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 113 (560)
T 3iii_A 39 IMEKDGTVEMRDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFW 113 (560)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECSS-----SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHH
T ss_pred EEEEEEEEECCCCcEEEEEEEecCC-----CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHH
Confidence 4567899999999999999999986 346999999998763311000000 00 0001111111236789
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 629 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 629 (751)
+++||+|+. .+.+|+|.+.... .+.....+|+.++++||.+++++| .||+++|+|+||++++.+|+..|+.++|+
T Consensus 114 a~~Gy~vv~---~D~RG~G~S~G~~~~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 114 VPNDYVVVK---VALRGSDKSKGVLSPWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GGGTCEEEE---EECTTSTTCCSCBCTTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred HhCCCEEEE---EcCCCCCCCCCccccCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 999999999 5555666654332 233567899999999999988777 79999999999999999999999999999
Q ss_pred EEccCCCCCCC---CccCccccc-ccch------------------h------h-HHHHHhcCcccccCCCCCCEEEEEc
Q 004475 630 IARSGSYNKTL---TPFGFQTEF-RTLW------------------E------A-TNVYIEMSPITHANKIKKPILIIHG 680 (751)
Q Consensus 630 v~~~~~~d~~~---~~~~~~~~~-~~~~------------------~------~-~~~~~~~~~~~~~~~~~~P~li~~G 680 (751)
|+.+|+.|... ..-+..... ...| . . .+.|...++ .+++|++|+|+++|
T Consensus 190 v~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vPvl~v~G 267 (560)
T 3iii_A 190 IPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTPLLTCAS 267 (560)
T ss_dssp EEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSCEEEEEE
T ss_pred EecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCCEEEeCC
Confidence 99999877321 000000000 0000 0 0 012333333 57889999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 681 ~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
-.|..+. ...+.+.++++... ...+++.++ +|..... .....+.+++||+++|+..
T Consensus 268 w~D~~~~--~~g~l~~y~~l~~~--~k~l~ih~~-~~~~~~~--~~~~~~~~~~wfD~~LkG~ 323 (560)
T 3iii_A 268 WSTQGLH--NRGSFEGFKQAASE--EKWLYVHGR-KEWESYY--ARENLERQKSFFDFYLKEE 323 (560)
T ss_dssp GGGTTTT--HHHHHHHHHHCCCS--SEEEEEESS-CHHHHHH--SHHHHHHHHHHHHHHTSCC
T ss_pred cCCCccc--chhHHHHHHhcccc--CcEEEECCC-CCcCccc--ChhHHHHHHHHHHHHhCCC
Confidence 9997443 56666777766543 334544332 2321100 1245678899999999853
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-15 Score=163.91 Aligned_cols=292 Identities=12% Similarity=0.151 Sum_probs=186.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|.+|+..+ .....+.. ....+...+|+|||+.|+... ....|.+++..+...+.+.....
T Consensus 244 ~i~~w~~~~----~~~~~~~~--~~~~v~~v~~~~d~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~h~~--- 304 (577)
T 2ymu_A 244 TVKLWNRNG----QLLQTLTG--HSSSVNGVAFRPDGQTIASAS----------DDKTVKLWNRNGQLLQTLTGHSS--- 304 (577)
T ss_dssp CEEEECTTS----CEEEEECC--CSSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTSCEEEEECCCSS---
T ss_pred EEEEEeCCC----CEEEEEec--CCCCEEEEEEcCCCCEEEEEe----------CCCEEEEEeCCCcEEEEEecCCC---
Confidence 577888655 44444442 233578899999999998863 23567777865544455532222
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
.+..++|+|||+.|+..+.+ ..|.+++++
T Consensus 305 --~v~~~~~~~~~~~l~t~~~d-------------------------------------------------~~i~~w~~~ 333 (577)
T 2ymu_A 305 --SVWGVAFSPDGQTIASASDD-------------------------------------------------KTVKLWNRN 333 (577)
T ss_dssp --CEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEETT
T ss_pred --CeEEEEECCCCCEEEEEeCC-------------------------------------------------CeEEEEeCC
Confidence 36788999999999877432 346666775
Q ss_pred C-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 166 G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+ ....+..+ ..+..++|+|||++|+....+ ..+.+|+..+.....+..+. ..
T Consensus 334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~ 387 (577)
T 2ymu_A 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SS 387 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTCCEEEEEECCS-------------SC
T ss_pred CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CC
Confidence 5 55556555 678899999999999876443 35778998776555543322 33
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
++.++|+|||+. |+..+ ..+.|.+++.. +.....+......+. ++|+||++.|+.... .
T Consensus 388 v~~~~~s~dg~~-l~~~~------------~d~~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----d 447 (577)
T 2ymu_A 388 VRGVAFSPDGQT-IASAS------------DDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDDQTIASASD----D 447 (577)
T ss_dssp EEEEEECTTSSC-EEEEE------------TTSEEEEECTT---CCEEEEEECCSSCEEEEEECTTSSEEEEEET----T
T ss_pred eEEEEECCCCCE-EEEEe------------CCCEEEEEeCC---CCEEEEecCCCCCeEEEEECCCCCEEEEEcC----C
Confidence 568999999998 65543 23568888764 444555556666777 999999999887652 2
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..|.+.+.++. ....+... ...+.. ++|||||+.|+..+.+ ..|++||..
T Consensus 448 ~~v~~w~~~~~--~~~~~~~~-~~~v~~------~~~spd~~~las~~~d---------------------~~i~iw~~~ 497 (577)
T 2ymu_A 448 KTVKLWNRNGQ--LLQTLTGH-SSSVRG------VAFSPDGQTIASASDD---------------------KTVKLWNRN 497 (577)
T ss_dssp SEEEEEETTSC--EEEEEECC-SSCEEE------EEECTTSCEEEEEETT---------------------SEEEEEETT
T ss_pred CEEEEEECCCC--EEEEEcCC-CCCEEE------EEEcCCCCEEEEEeCC---------------------CEEEEEcCC
Confidence 34555666542 22223222 222222 7899999999887732 268888975
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
++..+.+..... .+. .++|||||+.|+... . -+.|.++|.+
T Consensus 498 -~~~~~~~~~h~~----~v~-------~l~~s~dg~~l~s~~-~---dg~v~lwd~~ 538 (577)
T 2ymu_A 498 -GQLLQTLTGHSS----SVR-------GVAFSPDGQTIASAS-D---DKTVKLWNRN 538 (577)
T ss_dssp -SCEEEEEECCSS----CEE-------EEEECTTSSCEEEEE-T---TSEEEEECTT
T ss_pred -CCEEEEEeCCCC----CEE-------EEEEcCCCCEEEEEE-C---cCEEEEEeCC
Confidence 444333222111 122 258999999877543 2 2457777753
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=157.83 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=139.5
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+.+..+-+.+ .|+||++||.+. ....|. .....|+ ++|.|++ +|.
T Consensus 9 ~~~~~g~~l~y~~~G~~~--------~p~lvl~hG~~~--------------~~~~w~-~~~~~L~-~~~~vi~---~D~ 61 (266)
T 3om8_A 9 LATSDGASLAYRLDGAAE--------KPLLALSNSIGT--------------TLHMWD-AQLPALT-RHFRVLR---YDA 61 (266)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTC--------------CGGGGG-GGHHHHH-TTCEEEE---ECC
T ss_pred EeccCCcEEEEEecCCCC--------CCEEEEeCCCcc--------------CHHHHH-HHHHHhh-cCcEEEE---EcC
Confidence 445688888877775432 488999999641 111121 2333444 5899999 677
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP- 642 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~- 642 (751)
+|+|.+... ........+|+.++++.+ ..+++.++||||||.+|+.+|.++|++++++|+.++........
T Consensus 62 rG~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~ 135 (266)
T 3om8_A 62 RGHGASSVPPGPYTLARLGEDVLELLDAL------EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQ 135 (266)
T ss_dssp TTSTTSCCCCSCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhH
Confidence 788887533 224566677777777665 23589999999999999999999999999999987643211000
Q ss_pred c-----------Ccccc---cccchh----------hHHH-------------------HHhcCcccccCCCCCCEEEEE
Q 004475 643 F-----------GFQTE---FRTLWE----------ATNV-------------------YIEMSPITHANKIKKPILIIH 679 (751)
Q Consensus 643 ~-----------~~~~~---~~~~~~----------~~~~-------------------~~~~~~~~~~~~~~~P~li~~ 679 (751)
+ ..... ....|. ..+. +........+.++++|+|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~ 215 (266)
T 3om8_A 136 WDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIA 215 (266)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEE
T ss_pred HHHHHHHHHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEE
Confidence 0 00000 000000 0000 011112234677899999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|++|.++| +..++.+.+.++. .++++++ +||... .+..+.+.+.+.+||.
T Consensus 216 G~~D~~~~--~~~~~~l~~~ip~----a~~~~i~-~gH~~~-~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 216 GAYDTVTA--ASHGELIAASIAG----ARLVTLP-AVHLSN-VEFPQAFEGAVLSFLG 265 (266)
T ss_dssp ETTCSSSC--HHHHHHHHHHSTT----CEEEEES-CCSCHH-HHCHHHHHHHHHHHHT
T ss_pred eCCCCCCC--HHHHHHHHHhCCC----CEEEEeC-CCCCcc-ccCHHHHHHHHHHHhc
Confidence 99999998 8888888777653 4788888 789765 6778888999999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-14 Score=149.74 Aligned_cols=269 Identities=14% Similarity=0.112 Sum_probs=173.2
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
....+...+|||||+.|+... .+.|.++++.+++... +...........+..++|+|||+.|+....+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCCceEEEEEecCCcEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence 444688999999999999842 4788888887765322 2110000011147789999999999887432
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC---ceecCCC-ceEEeeee
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVEP 182 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~---~~~lt~~-~~~~~~~~ 182 (751)
..|.++++ +++ ...+..+ ..+..++|
T Consensus 119 -------------------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 119 -------------------------------------------------STLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp -------------------------------------------------SEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred -------------------------------------------------CcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 46778888 443 2233334 66889999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
+|||++|+....+ ..+.+||+.+++...... .....+..+.|+|||+. ++...
T Consensus 150 ~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~-l~~~~- 202 (337)
T 1gxr_A 150 SPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQ------------GHTDGASCIDISNDGTK-LWTGG- 202 (337)
T ss_dssp CTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSE-EEEEE-
T ss_pred CCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeee------------cccCceEEEEECCCCCE-EEEEe-
Confidence 9999998876543 358899998765433211 11233568999999987 55543
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+.|+++++. .............+. +.|+|||+.|+.... ...|.++++.++ ....+.
T Consensus 203 -----------~dg~i~~~d~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~--~~~~~~ 262 (337)
T 1gxr_A 203 -----------LDNTVRSWDLR---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP--DKYQLH 262 (337)
T ss_dssp -----------TTSEEEEEETT---TTEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS--CEEEEC
T ss_pred -----------cCCcEEEEECC---CCceEeeecCCCceEEEEECCCCCEEEEEcC----CCcEEEEECCCC--CeEEEc
Confidence 23578899885 333333334455667 999999999887662 245777777774 223332
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhce
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 421 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 421 (751)
.. ...+.. ++|+|||+.|+.... ...|.+|++.+++.......... +
T Consensus 263 ~~-~~~v~~------~~~~~~~~~l~~~~~---------------------dg~i~~~~~~~~~~~~~~~~~~~-----v 309 (337)
T 1gxr_A 263 LH-ESCVLS------LKFAYCGKWFVSTGK---------------------DNLLNAWRTPYGASIFQSKESSS-----V 309 (337)
T ss_dssp CC-SSCEEE------EEECTTSSEEEEEET---------------------TSEEEEEETTTCCEEEEEECSSC-----E
T ss_pred CC-ccceeE------EEECCCCCEEEEecC---------------------CCcEEEEECCCCeEEEEecCCCc-----E
Confidence 21 111222 789999999887772 23789999988876533322211 2
Q ss_pred eeeecCCcceeeccCCCEEEEEE
Q 004475 422 VALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 422 ~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
. .++|+||++.|+...
T Consensus 310 ~-------~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 310 L-------SCDISVDDKYIVTGS 325 (337)
T ss_dssp E-------EEEECTTSCEEEEEE
T ss_pred E-------EEEECCCCCEEEEec
Confidence 2 258999999777654
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=158.73 Aligned_cols=198 Identities=19% Similarity=0.190 Sum_probs=131.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +...| . ..... +.++|.|++ ++.+|+|.+... .....+..+|+.+.
T Consensus 15 ~~~vvllHG~~~-----------~~~~w---~-~~~~~-L~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 75 (268)
T 3v48_A 15 APVVVLISGLGG-----------SGSYW---L-PQLAV-LEQEYQVVC---YDQRGTGNNPDTLAEDYSIAQMAAELHQA 75 (268)
T ss_dssp CCEEEEECCTTC-----------CGGGG---H-HHHHH-HHTTSEEEE---CCCTTBTTBCCCCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCc-----------cHHHH---H-HHHHH-HhhcCeEEE---ECCCCCCCCCCCccccCCHHHHHHHHHHH
Confidence 588999999641 11111 1 22333 456899999 677788877442 12355666666666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-cc---------------cc----
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG-FQ---------------TE---- 648 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~-~~---------------~~---- 648 (751)
++.+ ..+++.++||||||.+|+.+|.++|++++++|+.++.......... +. ..
T Consensus 76 l~~l------~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T 3v48_A 76 LVAA------GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLF 149 (268)
T ss_dssp HHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc------CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhh
Confidence 6544 2358999999999999999999999999999998875321100000 00 00
Q ss_pred -cccchh--------------------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 649 -FRTLWE--------------------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 649 -~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
....|. ....+........+.++++|+|+++|++|..+| ...++.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~l~~~~p 227 (268)
T 3v48_A 150 LYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVP--TACSSELHAALP 227 (268)
T ss_dssp HSCHHHHHTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSC--THHHHHHHHHCS
T ss_pred cCchhhhhcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccC--HHHHHHHHHhCC
Confidence 000000 000011122233467889999999999999998 888877776653
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..++++++++||... .+..+.+.+.+.+||...+.
T Consensus 228 ----~~~~~~~~~~GH~~~-~e~p~~~~~~i~~fl~~~~~ 262 (268)
T 3v48_A 228 ----DSQKMVMPYGGHACN-VTDPETFNALLLNGLASLLH 262 (268)
T ss_dssp ----SEEEEEESSCCTTHH-HHCHHHHHHHHHHHHHHHHH
T ss_pred ----cCeEEEeCCCCcchh-hcCHHHHHHHHHHHHHHhcc
Confidence 468999999999875 67788999999999987653
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-16 Score=157.25 Aligned_cols=214 Identities=16% Similarity=0.152 Sum_probs=137.8
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+-|++ .|.||++||.+. +...| ......|+++||.|++ ++.
T Consensus 4 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~-----------~~~~w----~~~~~~L~~~g~~vi~---~D~ 57 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD--------APVIHFHHGWPL-----------SADDW----DAQLLFFLAHGYRVVA---HDR 57 (276)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECCCCcEEEEEecCCCC--------CCeEEEECCCCc-----------chhHH----HHHHHHHHhCCCEEEE---ecC
Confidence 345577778777765532 368999999641 11111 2345678889999999 667
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCC--
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~-- 640 (751)
+|+|.+... ........+|+.++++.+ +.+++.++||||||.+|+.+++.+ |++++++|+.++......
T Consensus 58 ~G~G~S~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 131 (276)
T 1zoi_A 58 RGHGRSSQVWDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQT 131 (276)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccc
Confidence 788887542 234566778888888776 235799999999999999988877 899999999886421100
Q ss_pred --CccCcccc-----------------------c--c-c-----ch-hhHHH-------------------HHhcCcccc
Q 004475 641 --TPFGFQTE-----------------------F--R-T-----LW-EATNV-------------------YIEMSPITH 667 (751)
Q Consensus 641 --~~~~~~~~-----------------------~--~-~-----~~-~~~~~-------------------~~~~~~~~~ 667 (751)
.+...... . . . .. ...+. +........
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (276)
T 1zoi_A 132 PGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTED 211 (276)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhh
Confidence 00000000 0 0 0 00 00000 001112233
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.++++|+|+++|++|..+| +....+.+..+ -...+++++++++|... .+....+.+.+.+||.
T Consensus 212 l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 212 LKGIQQPVLVMHGDDDQIVP--YENSGVLSAKL---LPNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp HHHCCSCEEEEEETTCSSSC--STTTHHHHHHH---STTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEEcCCCcccC--hHHHHHHHHhh---CCCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 56789999999999999998 66333333222 13578999999999875 4567888999999984
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=158.36 Aligned_cols=214 Identities=17% Similarity=0.109 Sum_probs=141.2
Q ss_pred EEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCC-ccCCCCchHHHHHHhCCeEEEEcC
Q 004475 483 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-EFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 483 ~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+..+...+|..+....+-|++ .|+||++||.+. +.. .|. .....| ++||.|++
T Consensus 4 ~~~~~~~~g~~l~~~~~G~~~--------~~~vvllHG~~~-----------~~~~~w~----~~~~~L-~~~~~vi~-- 57 (286)
T 2yys_A 4 EIGYVPVGEAELYVEDVGPVE--------GPALFVLHGGPG-----------GNAYVLR----EGLQDY-LEGFRVVY-- 57 (286)
T ss_dssp EEEEEECSSCEEEEEEESCTT--------SCEEEEECCTTT-----------CCSHHHH----HHHGGG-CTTSEEEE--
T ss_pred ceeEEeECCEEEEEEeecCCC--------CCEEEEECCCCC-----------cchhHHH----HHHHHh-cCCCEEEE--
Confidence 344445678888877775532 378999999641 111 111 122333 57999999
Q ss_pred CCCCCCCCCCCC-C----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 562 SIPIIGEGDKLP-N----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 562 ~~~~~g~g~~~~-~----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+|.+|+|.+.. . ........+|+.++++.+ ..+++.|+||||||.+|+.+|.++|+ ++++|+.++..
T Consensus 58 -~Dl~G~G~S~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~ 129 (286)
T 2yys_A 58 -FDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEAL------GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWV 129 (286)
T ss_dssp -ECCTTSTTSCCCCSCGGGCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCC
T ss_pred -ECCCCCCCCCCCccCcccCcHHHHHHHHHHHHHHh------CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCcc
Confidence 67778888764 3 223566777777777765 23589999999999999999999999 99999998864
Q ss_pred CCCC-C-cc--------------Cccc----cc-----cc--chhh-----H----------------HH--HH---hcC
Q 004475 637 NKTL-T-PF--------------GFQT----EF-----RT--LWEA-----T----------------NV--YI---EMS 663 (751)
Q Consensus 637 d~~~-~-~~--------------~~~~----~~-----~~--~~~~-----~----------------~~--~~---~~~ 663 (751)
.... . .. .+.. .. .. .... . .. +. ...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T 2yys_A 130 NFPWLAARLAEAAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLD 209 (286)
T ss_dssp BHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCB
T ss_pred CcHHHHHHHHHHhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCC
Confidence 2100 0 00 0000 00 00 0000 0 00 00 011
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
....+.++++|+|+++|++|..+| .. ++.+.+ +.. +++++++++||... .+..+.+.+.+.+||.+.
T Consensus 210 ~~~~l~~i~~P~lvi~G~~D~~~~--~~-~~~~~~-~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 210 YTPYLTPERRPLYVLVGERDGTSY--PY-AEEVAS-RLR----APIRVLPEAGHYLW-IDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp CGGGCCCCSSCEEEEEETTCTTTT--TT-HHHHHH-HHT----CCEEEETTCCSSHH-HHCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhcCCCEEEEEeCCCCcCC--Hh-HHHHHh-CCC----CCEEEeCCCCCCcC-hhhHHHHHHHHHHHHHhh
Confidence 223466789999999999999998 77 888887 754 36899999999876 556788999999999863
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=164.38 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=143.3
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCC--
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARR-- 554 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G-- 554 (751)
...+.+++.+. .+..+..++|+|+++++.+ ++|+|+++||+++.. ....+ ......+ ++.|
T Consensus 16 ~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~Pvl~~lhG~~~~~------------~~~~~-~~~~~~~~~~~g~~ 80 (275)
T 2qm0_A 16 SNTEQWKMYSKLEGKEYQIHISKPKQPAPDS--GYPVIYVLDGNAFFQ------------TFHEA-VKIQSVRAEKTGVS 80 (275)
T ss_dssp TTEEEEEEECTTTCCEEEEEEECCSSCCCTT--CEEEEEEESHHHHHH------------HHHHH-HHHHGGGHHHHCCC
T ss_pred CCceEEEEEecCCCCEEEEEEECCCCCCCCC--CccEEEEecChHHHH------------HHHHH-HHHHhhcchhcCCC
Confidence 45778888875 5788999999999876543 599999999974200 00000 0011111 3457
Q ss_pred -eEEEEcCCCCCC---------CCCCCCC--------------CchhHHHHHHHH-HHHHHHHHHcCCCCCCcEEEEEeC
Q 004475 555 -FAVLAGPSIPII---------GEGDKLP--------------NDRFVEQLVSSA-EAAVEEVVRRGVADPSRIAVGGHS 609 (751)
Q Consensus 555 -~~v~~~~~~~~~---------g~g~~~~--------------~~~~~~~~~~d~-~~~v~~l~~~~~id~~~i~l~G~S 609 (751)
++|+.+++++.. .++.... .........+.+ .+++.++.++..+|+++++++|||
T Consensus 81 ~~ivV~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S 160 (275)
T 2qm0_A 81 PAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHX 160 (275)
T ss_dssp CCEEEEEECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEET
T ss_pred CeEEEEECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEec
Confidence 999986654311 0111000 000011112222 245666766666788899999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCC
Q 004475 610 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689 (751)
Q Consensus 610 ~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~ 689 (751)
|||++|+.++.++|+.|+++++++|.+.+... ......+.+.... ......+|++++||+.|..++
T Consensus 161 ~GG~~a~~~~~~~p~~f~~~~~~s~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~-- 226 (275)
T 2qm0_A 161 LGGLFALHILFTNLNAFQNYFISSPSIWWNNK---------SVLEKEENLIIEL---NNAKFETGVFLTVGSLEREHM-- 226 (275)
T ss_dssp HHHHHHHHHHHHCGGGCSEEEEESCCTTHHHH---------GGGGGTTHHHHHH---HTCSSCEEEEEEEETTSCHHH--
T ss_pred chhHHHHHHHHhCchhhceeEEeCceeeeChH---------HHHHHHHHHHhhh---cccCCCceEEEEeCCcccchh--
Confidence 99999999999999999999999997531100 0000001111100 023456899999999999887
Q ss_pred hHHHHHHHHHH---HhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 690 PMQAERFFDAL---KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 690 ~~~~~~~~~~l---~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
..++++++++| +..|.++++.++|+++|... ....+...+.||
T Consensus 227 ~~~~~~~~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 227 VVGANELSERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHHHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 89999999999 55778899999999999643 233445556665
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-16 Score=165.53 Aligned_cols=220 Identities=13% Similarity=0.009 Sum_probs=145.4
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
...+.+...+|..+.....- ..|+||++||.+.. ...| ..+...|+++||.|++
T Consensus 3 ~i~~~~~~~dG~~l~y~~~G----------~gp~VV~lHG~~~~-----------~~~~----~~l~~~La~~Gy~Vi~- 56 (456)
T 3vdx_A 3 FITVGQENSTSIDLYYEDHG----------TGVPVVLIHGFPLS-----------GHSW----ERQSAALLDAGYRVIT- 56 (456)
T ss_dssp EEEEEEETTEEEEEEEEEES----------SSEEEEEECCTTCC-----------GGGG----TTHHHHHHHHTEEEEE-
T ss_pred eEeecccccCCeEEEEEEeC----------CCCEEEEECCCCCc-----------HHHH----HHHHHHHHHCCcEEEE-
Confidence 34455556677666644331 24899999997521 1122 1356677889999999
Q ss_pred CCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCC
Q 004475 561 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYN 637 (751)
Q Consensus 561 ~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d 637 (751)
++.+|+|.+... .....+..+|+.++++++ +.++++++||||||.+++.+++.+ |++++++|++++...
T Consensus 57 --~D~rG~G~S~~~~~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~ 128 (456)
T 3vdx_A 57 --YDRRGFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128 (456)
T ss_dssp --ECCTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCS
T ss_pred --ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCccc
Confidence 566677776432 234567788888888877 346899999999999999988877 899999999998754
Q ss_pred CCCCccCccccc-c-------------c--c------------------hhhHHHH---------------------Hhc
Q 004475 638 KTLTPFGFQTEF-R-------------T--L------------------WEATNVY---------------------IEM 662 (751)
Q Consensus 638 ~~~~~~~~~~~~-~-------------~--~------------------~~~~~~~---------------------~~~ 662 (751)
............ . . . ......+ ...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (456)
T 3vdx_A 129 FLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYT 208 (456)
T ss_dssp CCBCCSSCCSCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTC
T ss_pred ccccccccccccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhh
Confidence 221110000000 0 0 0 0000000 001
Q ss_pred CcccccCCCCCCEEEEEcCCCCCCCCChH-HHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 663 SPITHANKIKKPILIIHGEVDDKVGLFPM-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 663 ~~~~~~~~~~~P~li~~G~~D~~vp~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+....+.++++|+|+++|+.|..+| +. ....+.+.+ ..++++++++++|.+. .+....+.+.+.+||.+++.
T Consensus 209 d~~~~l~~i~~PvLiI~G~~D~~vp--~~~~~~~l~~~~----~~~~~~~i~gagH~~~-~e~p~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 209 DFRADIPRIDVPALILHGTGDRTLP--IENTARVFHKAL----PSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAKALE 281 (456)
T ss_dssp CCTTTSTTCCSCCEEEEETTCSSSC--GGGTHHHHHHHC----TTSEEEEETTCCSCTT-TTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhCCCCEEEEEeCCCCCcC--HHHHHHHHHHHC----CCceEEEeCCCCCcch-hhCHHHHHHHHHHHHHHhhc
Confidence 2223466789999999999999998 77 344444333 3568999999999976 46788999999999998764
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=157.01 Aligned_cols=211 Identities=15% Similarity=0.070 Sum_probs=137.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+..+-|++ .|.||++||.+. ....|.......|+++||.|++ +|.+|+
T Consensus 8 ~~g~~l~y~~~G~~~--------~~~vvllHG~~~--------------~~~~w~~~~~~~L~~~G~~vi~---~D~rG~ 62 (298)
T 1q0r_A 8 SGDVELWSDDFGDPA--------DPALLLVMGGNL--------------SALGWPDEFARRLADGGLHVIR---YDHRDT 62 (298)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTC--------------CGGGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEeccCCC--------CCeEEEEcCCCC--------------CccchHHHHHHHHHhCCCEEEe---eCCCCC
Confidence 467777777665432 368999999641 1122222234677888999999 666788
Q ss_pred CCCCC--C---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC-CC----
Q 004475 569 GDKLP--N---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY-NK---- 638 (751)
Q Consensus 569 g~~~~--~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~-d~---- 638 (751)
|.+.. . .....+..+|+.++++.+ +.+++.++||||||.+|+.+|.++|++++++|++++.. ..
T Consensus 63 G~S~~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 136 (298)
T 1q0r_A 63 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 136 (298)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred CCCCCCCCCcCCcCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCccccc
Confidence 87754 1 123566777777777765 23589999999999999999999999999999988654 21
Q ss_pred -------------CCCccC------ccc-----cc------------------ccchhhH---H----HHHhc-------
Q 004475 639 -------------TLTPFG------FQT-----EF------------------RTLWEAT---N----VYIEM------- 662 (751)
Q Consensus 639 -------------~~~~~~------~~~-----~~------------------~~~~~~~---~----~~~~~------- 662 (751)
...... ... .. ...+... + .+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (298)
T 1q0r_A 137 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 216 (298)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred chhhhhhhhhhhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchh
Confidence 000000 000 00 0000000 0 00000
Q ss_pred ----------Ccccc-cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHH
Q 004475 663 ----------SPITH-ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWE 731 (751)
Q Consensus 663 ----------~~~~~-~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 731 (751)
..... +.++++|+|+++|++|..+| +..++.+.+.+ ...+++++|++||. ...++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~----p~~~~~~i~~~gHe-----~p~~~~~~ 285 (298)
T 1q0r_A 217 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLI----PTARLAEIPGMGHA-----LPSSVHGP 285 (298)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTS----TTEEEEEETTCCSS-----CCGGGHHH
T ss_pred hhhhhhhcCcccccccccccCCCEEEEEeCCCccCC--HHHHHHHHHhC----CCCEEEEcCCCCCC-----CcHHHHHH
Confidence 01123 66789999999999999998 77777666554 35689999999993 23467888
Q ss_pred HHHHHHHHhc
Q 004475 732 TDRWLQKYCL 741 (751)
Q Consensus 732 ~~~fl~~~l~ 741 (751)
+.+||.++..
T Consensus 286 i~~fl~~~~~ 295 (298)
T 1q0r_A 286 LAEVILAHTR 295 (298)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988753
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=158.54 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=131.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+..+.|++ ..+.|+||++||.+.. ...+... .....|+++||.|+++ +.+|+
T Consensus 14 ~~g~~l~~~~~~p~~-----~~~~~~vv~~hG~~~~-----------~~~~~~~--~~~~~l~~~G~~v~~~---d~~g~ 72 (210)
T 1imj_A 14 VQGQALFFREALPGS-----GQARFSVLLLHGIRFS-----------SETWQNL--GTLHRLAQAGYRAVAI---DLPGL 72 (210)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCC-----------HHHHHHH--THHHHHHHTTCEEEEE---CCTTS
T ss_pred eCCeEEEEEEeCCCC-----CCCCceEEEECCCCCc-----------cceeecc--hhHHHHHHCCCeEEEe---cCCCC
Confidence 377889999998864 2246899999996411 1111100 1356788899999994 44555
Q ss_pred CCCCCCc--hhHHHHH--HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC
Q 004475 569 GDKLPND--RFVEQLV--SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 569 g~~~~~~--~~~~~~~--~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~ 644 (751)
|.+.... ....... +++..+++.+ +.++++++|||+||.+|+.++..+|++++++|+.+|......
T Consensus 73 g~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~---- 142 (210)
T 1imj_A 73 GHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---- 142 (210)
T ss_dssp GGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----
T ss_pred CCCCCCCCcchhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc----
Confidence 5543221 1112222 5555555554 246899999999999999999999999999999998643110
Q ss_pred cccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 645 FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
....+.++++|+|+++|++|. +| ...++.+ +.+ ..+++.++++++|.+. .+.
T Consensus 143 -------------------~~~~~~~~~~p~l~i~g~~D~-~~--~~~~~~~-~~~----~~~~~~~~~~~~H~~~-~~~ 194 (210)
T 1imj_A 143 -------------------NAANYASVKTPALIVYGDQDP-MG--QTSFEHL-KQL----PNHRVLIMKGAGHPCY-LDK 194 (210)
T ss_dssp -------------------CHHHHHTCCSCEEEEEETTCH-HH--HHHHHHH-TTS----SSEEEEEETTCCTTHH-HHC
T ss_pred -------------------cchhhhhCCCCEEEEEcCccc-CC--HHHHHHH-hhC----CCCCEEEecCCCcchh-hcC
Confidence 112235678999999999999 87 6665555 333 4679999999999864 444
Q ss_pred HHHHHHHHHHHHHH
Q 004475 725 VMHVIWETDRWLQK 738 (751)
Q Consensus 725 ~~~~~~~~~~fl~~ 738 (751)
...+.+.+.+||++
T Consensus 195 ~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 195 PEEWHTGLLDFLQG 208 (210)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66778888888874
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=159.60 Aligned_cols=213 Identities=19% Similarity=0.162 Sum_probs=136.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+-+.. +.|.||++||++.. ...+ . .....++++||.|++ ++.+|+
T Consensus 12 ~~g~~l~~~~~g~~~-------~~~~vvllHG~~~~-----------~~~~---~-~~~~~l~~~g~~vi~---~D~~G~ 66 (293)
T 1mtz_A 12 VNGIYIYYKLCKAPE-------EKAKLMTMHGGPGM-----------SHDY---L-LSLRDMTKEGITVLF---YDQFGC 66 (293)
T ss_dssp ETTEEEEEEEECCSS-------CSEEEEEECCTTTC-----------CSGG---G-GGGGGGGGGTEEEEE---ECCTTS
T ss_pred ECCEEEEEEEECCCC-------CCCeEEEEeCCCCc-----------chhH---H-HHHHHHHhcCcEEEE---ecCCCC
Confidence 356667666554311 13789999995311 0111 1 112334678999999 667788
Q ss_pred CCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-----
Q 004475 569 GDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL----- 640 (751)
Q Consensus 569 g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~----- 640 (751)
|.+.... .......+|+.++++.+. +.+++.|+||||||.+|+.+|.++|++++++|+.++......
T Consensus 67 G~S~~~~~~~~~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (293)
T 1mtz_A 67 GRSEEPDQSKFTIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141 (293)
T ss_dssp TTSCCCCGGGCSHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHH
T ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHH
Confidence 8875443 234566777777777762 125899999999999999999999999999999988643100
Q ss_pred ------CccC----c---------ccc-c--------------ccchhhH--HH---------HHh--------------
Q 004475 641 ------TPFG----F---------QTE-F--------------RTLWEAT--NV---------YIE-------------- 661 (751)
Q Consensus 641 ------~~~~----~---------~~~-~--------------~~~~~~~--~~---------~~~-------------- 661 (751)
.... . ... . ...|... .. +..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (293)
T 1mtz_A 142 NRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIK 221 (293)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTT
T ss_pred HHHHHhcCHHHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceeccccccc
Confidence 0000 0 000 0 0001000 00 000
Q ss_pred -cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 662 -MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 662 -~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
......+.++++|+|+++|++| .++ +..++.+.+.+. .++++++++++|... .+....+.+.+.+||.++
T Consensus 222 ~~~~~~~l~~i~~P~lii~G~~D-~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 292 (293)
T 1mtz_A 222 DWDITDKISAIKIPTLITVGEYD-EVT--PNVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 292 (293)
T ss_dssp TCBCTTTGGGCCSCEEEEEETTC-SSC--HHHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred CCChhhhhccCCCCEEEEeeCCC-CCC--HHHHHHHHHhCC----CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 0112234568899999999999 666 777777766553 468999999999875 456788999999999764
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=153.16 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=134.1
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+- ..|+||++||.+. +...| ......|+++||.|++ ++.
T Consensus 3 ~~~~~g~~l~y~~~g----------~~~~vvllHG~~~-----------~~~~~----~~~~~~L~~~g~~vi~---~D~ 54 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG----------SGQPIVFSHGWPL-----------NADSW----ESQMIFLAAQGYRVIA---HDR 54 (273)
T ss_dssp EECTTSCEEEEEEES----------CSSEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EecCCCcEEEEEEcC----------CCCEEEEECCCCC-----------cHHHH----hhHHhhHhhCCcEEEE---ECC
Confidence 345577777655442 1367999999641 11111 2345678889999999 666
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCC--
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~-- 640 (751)
+|+|.+... ........+|+.++++.+ +.+++.++||||||.+|+.+++++ |++++++|+.++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (273)
T 1a8s_A 55 RGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKT 128 (273)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccC
Confidence 788877542 223556677777777665 346899999999999999977765 899999999886421100
Q ss_pred --CccCcccc-----------------------c--c-------c-------chhh-----H-------HHHHhcCcccc
Q 004475 641 --TPFGFQTE-----------------------F--R-------T-------LWEA-----T-------NVYIEMSPITH 667 (751)
Q Consensus 641 --~~~~~~~~-----------------------~--~-------~-------~~~~-----~-------~~~~~~~~~~~ 667 (751)
........ . . . .|.. . ..+........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T 1a8s_A 129 EANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTED 208 (273)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHH
T ss_pred ccccccCcHHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhh
Confidence 00000000 0 0 0 0000 0 00111122234
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.++++|+|+++|++|..+| +....+.+..+. ..++++++++++|... .+..+.+.+.+.+||.
T Consensus 209 l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 209 LKKIDVPTLVVHGDADQVVP--IEASGIASAALV---KGSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHTCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCccCC--hHHHHHHHHHhC---CCcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 56789999999999999998 664433333321 2468999999999875 5667888999999985
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-16 Score=155.01 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=130.0
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~v~ 590 (751)
|.||++||.+. +...| ......|+++||.|++ ++.+|+|.+.... .......+|+.++++
T Consensus 24 ~pvvllHG~~~-----------~~~~~----~~~~~~L~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~a~dl~~~l~ 85 (277)
T 1brt_A 24 QPVVLIHGFPL-----------SGHSW----ERQSAALLDAGYRVIT---YDRRGFGQSSQPTTGYDYDTFAADLNTVLE 85 (277)
T ss_dssp SEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCC-----------cHHHH----HHHHHHHhhCCCEEEE---eCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 35999999641 11111 2345677889999999 6677888775432 245667788888887
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCC----ccC-cccc-----------cc-c-
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLT----PFG-FQTE-----------FR-T- 651 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~d~~~~----~~~-~~~~-----------~~-~- 651 (751)
.+ +.+++.++||||||.+|+.+|.++|+ +++++|+.++....... +.. .... .. .
T Consensus 86 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
T 1brt_A 86 TL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAF 159 (277)
T ss_dssp HH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHH
T ss_pred Hh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhh
Confidence 76 23589999999999999999999998 99999999874321110 000 0000 00 0
Q ss_pred -------chh---------hH---HHHH------------------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHH-
Q 004475 652 -------LWE---------AT---NVYI------------------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQA- 693 (751)
Q Consensus 652 -------~~~---------~~---~~~~------------------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~- 693 (751)
.+. .. +.+. .......+.++++|+|+++|++|..+| ...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~ 237 (277)
T 1brt_A 160 YTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLP--IENTA 237 (277)
T ss_dssp HHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSC--GGGTH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCC--hHHHH
Confidence 000 00 0000 111222456789999999999999998 7776
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+.+.+. ..+++++++++|... .+..+.+.+.+.+||.
T Consensus 238 ~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 238 RVFHKALP----SAEYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp HHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred HHHHHHCC----CCcEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 66666553 458999999999875 4567788899999985
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-16 Score=156.14 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=125.3
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~ 590 (751)
|.||++||.+. +...|. .....|+++||.|++ ++.+|+|.+... ........+|+.++++
T Consensus 28 ~~vvllHG~~~-----------~~~~w~----~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~ 89 (281)
T 3fob_A 28 KPVVLIHGWPL-----------SGRSWE----YQVPALVEAGYRVIT---YDRRGFGKSSQPWEGYEYDTFTSDLHQLLE 89 (281)
T ss_dssp EEEEEECCTTC-----------CGGGGT----TTHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCC-----------cHHHHH----HHHHHHHhCCCEEEE---eCCCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 67899999641 112222 235577889999999 667788877543 2335666777777776
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEccCCCCCCCC----ccCccc-cc---------------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTLT----PFGFQT-EF--------------- 649 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~d~~~~----~~~~~~-~~--------------- 649 (751)
.+ +.+++.|+||||||.+++.+++. .|++++++|+.++....... +..... ..
T Consensus 90 ~l------~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (281)
T 3fob_A 90 QL------ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAF 163 (281)
T ss_dssp HT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHH
T ss_pred Hc------CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHH
Confidence 65 23589999999999987776655 58999999988764221100 000000 00
Q ss_pred --------------c-cc--------hh------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHH-
Q 004475 650 --------------R-TL--------WE------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA- 693 (751)
Q Consensus 650 --------------~-~~--------~~------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~- 693 (751)
. .. |. ....+...+....+.++++|+|+++|++|..+| +..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~ 241 (281)
T 3fob_A 164 LDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVP--FEYSG 241 (281)
T ss_dssp HHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSC--GGGTH
T ss_pred HHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecCCCCCcC--HHHHH
Confidence 0 00 00 000011122234567899999999999999998 7765
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+.+.+ ...++++++++||... .+..+.+.+.+.+||.
T Consensus 242 ~~~~~~~----p~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 242 KLTHEAI----PNSKVALIKGGPHGLN-ATHAKEFNEALLLFLK 280 (281)
T ss_dssp HHHHHHS----TTCEEEEETTCCTTHH-HHTHHHHHHHHHHHHC
T ss_pred HHHHHhC----CCceEEEeCCCCCchh-hhhHHHHHHHHHHHhh
Confidence 3333333 3468999999999875 6677889999999984
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=160.04 Aligned_cols=214 Identities=10% Similarity=0.080 Sum_probs=141.6
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|..+....+-+ .|+||++||.+. +...|. .+...|+.+||.|++ ++.+|+|
T Consensus 17 ~g~~l~~~~~g~----------~~~vv~~HG~~~-----------~~~~~~----~~~~~l~~~g~~v~~---~d~~G~G 68 (309)
T 3u1t_A 17 EGATIAYVDEGS----------GQPVLFLHGNPT-----------SSYLWR----NIIPYVVAAGYRAVA---PDLIGMG 68 (309)
T ss_dssp TTEEEEEEEEEC----------SSEEEEECCTTC-----------CGGGGT----TTHHHHHHTTCEEEE---ECCTTST
T ss_pred CCeEEEEEEcCC----------CCEEEEECCCcc-----------hhhhHH----HHHHHHHhCCCEEEE---EccCCCC
Confidence 566676555421 478999999642 112221 345566889999999 5666777
Q ss_pred CCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccc
Q 004475 570 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT 647 (751)
Q Consensus 570 ~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~ 647 (751)
.+... .....+..+|+.++++.+ +.++++|+||||||.+|+.++.++|++++++|++++..........+..
T Consensus 69 ~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 142 (309)
T 3u1t_A 69 DSAKPDIEYRLQDHVAYMDGFIDAL------GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEA 142 (309)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGG
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHc------CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccc
Confidence 76443 234566677777777665 2368999999999999999999999999999999976542210000000
Q ss_pred c------------------------------------c--ccchhhHHHH-----------------Hhc----------
Q 004475 648 E------------------------------------F--RTLWEATNVY-----------------IEM---------- 662 (751)
Q Consensus 648 ~------------------------------------~--~~~~~~~~~~-----------------~~~---------- 662 (751)
. . ...-.....+ ...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (309)
T 3u1t_A 143 MGPQLGPLFRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAE 222 (309)
T ss_dssp GHHHHHHHHHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHH
T ss_pred cchhhhHHHHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhh
Confidence 0 0 0000000000 000
Q ss_pred ----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 663 ----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 663 ----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.....+.++++|+|+++|++|..+| ...++.+.+.+. ..++.++++++|... .+....+.+.+.+||++
T Consensus 223 ~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 295 (309)
T 3u1t_A 223 AEVLKNGEWLMASPIPKLLFHAEPGALAP--KPVVDYLSENVP----NLEVRFVGAGTHFLQ-EDHPHLIGQGIADWLRR 295 (309)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccCCCCEEEEecCCCCCCC--HHHHHHHHhhCC----CCEEEEecCCcccch-hhCHHHHHHHHHHHHHh
Confidence 0011245678999999999999998 888777777653 356777799999765 56778899999999999
Q ss_pred HhcCCC
Q 004475 739 YCLSNT 744 (751)
Q Consensus 739 ~l~~~~ 744 (751)
...+..
T Consensus 296 ~~~~~~ 301 (309)
T 3u1t_A 296 NKPHAS 301 (309)
T ss_dssp HCCCCC
T ss_pred cchhhh
Confidence 976543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=174.75 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=178.3
Q ss_pred ceeEEeecC---CCCCCCCcccccC---CCCcc--cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee
Q 004475 5 TGIGIHRLL---PDDSLGPEKEVHG---YPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP 76 (751)
Q Consensus 5 ~~~~~~~~~---~~~~~g~~~~l~~---~~~~~--~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~ 76 (751)
..||+++.. + ++.+.|.. +..+. .+..++|||||++|||.+... +....+||++++++|+..+
T Consensus 133 ~~l~~~~~~~~~~----~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~ 203 (741)
T 1yr2_A 133 SQLLVRPADAPVG----TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLA 203 (741)
T ss_dssp CEEEEEETTSCTT----CCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEE
T ss_pred EEEEEEcCCccCC----CCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCC
Confidence 567888886 5 77776532 12222 467899999999999987531 1334789999999998766
Q ss_pred ccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhee
Q 004475 77 LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (751)
Q Consensus 77 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (751)
.+.... .+..++|||| +.|+|.+.+....... . . .....
T Consensus 204 ~~~~~~-----~~~~~~wspD-~~l~~~~~~~~~~~~~---------~---~-----------------------~~~~~ 242 (741)
T 1yr2_A 204 DELKWV-----KFSGLAWLGN-DALLYSRFAEPKEGQA---------F---Q-----------------------ALNYN 242 (741)
T ss_dssp EEEEEE-----ESCCCEESTT-SEEEEEECCCC-------------------------------------------CCCC
T ss_pred ccCCCc-----eeccEEEECC-CEEEEEEecCcccccc---------c---c-----------------------cCCCC
Confidence 521110 1257899999 9999996542210000 0 0 00012
Q ss_pred eEEEEEcC-CCC--ceecCCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--e-eeeecc
Q 004475 157 AQLVLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VRELCD 226 (751)
Q Consensus 157 ~~l~~~~~-~G~--~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~-~~~l~~ 226 (751)
.+||++++ +++ .+.+... ..+..+.|||||++|++.+.... ....+||++|++++ + .+.|..
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT--------DPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT--------CSCCEEEEEEEETTEECCCEEEEC
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC--------CCcceEEEEECCCCCCcccEEecC
Confidence 57999998 553 2333322 24678999999999999875431 12568999999876 4 555543
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EE
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VS 304 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~ 304 (751)
.... . ...++|||++ |++.+.. ...+..|++++++... +..+.+... ...+. +.
T Consensus 315 ~~~~-------------~-~~~~~~dg~~-l~~~s~~--------~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 315 DLKA-------------Q-WDFVDGVGDQ-LWFVSGD--------GAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVG 370 (741)
T ss_dssp SSSS-------------C-EEEEEEETTE-EEEEECT--------TCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEE
T ss_pred CCCc-------------e-EEEEeccCCE-EEEEECC--------CCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEE
Confidence 3211 1 1235699999 6665422 1124589999986211 233444433 33445 66
Q ss_pred EecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEcc
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 384 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 384 (751)
|+ +..|++.... ....+||+++++++ ..+.+.......+.. ++++|||+.|+|.....
T Consensus 371 ~~--~~~lv~~~~~-dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~------~~~s~d~~~l~~~~ss~----------- 428 (741)
T 1yr2_A 371 IA--GNRLFASYIH-DAKSQVLAFDLDGK--PAGAVSLPGIGSASG------LSGRPGDRHAYLSFSSF----------- 428 (741)
T ss_dssp EE--BTEEEEEEEE-TTEEEEEEEETTSC--EEEECBCSSSCEEEE------EECCBTCSCEEEEEEET-----------
T ss_pred EE--CCEEEEEEEE-CCEEEEEEEeCCCC--ceeeccCCCCeEEEE------eecCCCCCEEEEEEcCC-----------
Confidence 66 5566666543 34568999998653 334443211111112 67899999888776321
Q ss_pred CCCCCCCCCceeEEEecCCCceeEE
Q 004475 385 RGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 385 ~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.....|++||+.+++.+.+
T Consensus 429 ------~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 429 ------TQPATVLALDPATAKTTPW 447 (741)
T ss_dssp ------TEEEEEEEEETTTTEEEEC
T ss_pred ------CCCCEEEEEECCCCcEEEE
Confidence 2344799999998876544
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=165.92 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=128.1
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC----------------
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---------------- 573 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~---------------- 573 (751)
+++|+||++||++.. .......+..|+++||+|++++.+ |+|.+..
T Consensus 96 ~~~P~Vv~~HG~~~~---------------~~~~~~~a~~La~~Gy~V~~~d~~---g~g~s~~~~~~~~~~~~~~~~~~ 157 (383)
T 3d59_A 96 EKYPLVVFSHGLGAF---------------RTLYSAIGIDLASHGFIVAAVEHR---DRSASATYYFKDQSAAEIGDKSW 157 (383)
T ss_dssp SCEEEEEEECCTTCC---------------TTTTHHHHHHHHHTTCEEEEECCC---SSCSSEEEECSSHHHHHHTCCEE
T ss_pred CCCCEEEEcCCCCCC---------------chHHHHHHHHHHhCceEEEEeccC---CCCccceeecCCccccccCCcee
Confidence 368999999997411 111235677899999999996554 4433210
Q ss_pred -------Cc-h------hHHHHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEeChHHHHHHHHH
Q 004475 574 -------ND-R------FVEQLVSSAEAAVEEVVR--------------------RGVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 574 -------~~-~------~~~~~~~d~~~~v~~l~~--------------------~~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
.. . ......+|+..+++++.+ ...+|.+||+++|||+||.+|+.++
T Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 237 (383)
T 3d59_A 158 LYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTL 237 (383)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHH
Confidence 00 0 012235788999999976 4457788999999999999999998
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHH
Q 004475 620 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 699 (751)
Q Consensus 620 ~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~ 699 (751)
.+.+ +++++|+++|.... . . ...+.++++|+|++||++|..+ ... +..+.
T Consensus 238 ~~~~-~v~a~v~~~~~~~p----~----~----------------~~~~~~i~~P~Lii~g~~D~~~----~~~-~~~~~ 287 (383)
T 3d59_A 238 SEDQ-RFRCGIALDAWMFP----L----G----------------DEVYSRIPQPLFFINSEYFQYP----ANI-IKMKK 287 (383)
T ss_dssp HHCT-TCCEEEEESCCCTT----C----C----------------GGGGGSCCSCEEEEEETTTCCH----HHH-HHHHT
T ss_pred hhCC-CccEEEEeCCccCC----C----c----------------hhhhccCCCCEEEEecccccch----hhH-HHHHH
Confidence 8874 69999999885321 0 0 0113567899999999999853 332 23355
Q ss_pred HHhCCCcEEEEEeCCCCCcCCcc------------------ccH----HHHHHHHHHHHHHHhcCC
Q 004475 700 LKGHGALSRLVLLPFEHHVYAAR------------------ENV----MHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 700 l~~~~~~~~~~~~~~~~H~~~~~------------------~~~----~~~~~~~~~fl~~~l~~~ 743 (751)
+...+.+++++++++++|.+... ... +.+.+.+++||+++++..
T Consensus 288 l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 288 CYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 66667789999999999986310 011 233457999999999754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-15 Score=156.01 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=159.4
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+|+++.++. ++|+.+.+... ........+|||||++|+++...+ ...+...+|.++.++|+.+++........
T Consensus 28 ~i~~~~~d~--~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~----~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 28 GIYTFRFNE--ETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS----KDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp EEEEEEEET--TTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS----STTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CEEEEEEeC--CCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccC----CCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 688887754 55888877644 333456779999999998876311 11345666777777687777654322110
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
....+++ ||++|++..... ..+.++++
T Consensus 101 --~p~~~~~--dg~~l~~~~~~~------------------------------------------------~~v~~~~~~ 128 (361)
T 3scy_A 101 --DPCYLTT--NGKNIVTANYSG------------------------------------------------GSITVFPIG 128 (361)
T ss_dssp --CEEEEEE--CSSEEEEEETTT------------------------------------------------TEEEEEEBC
T ss_pred --CcEEEEE--CCCEEEEEECCC------------------------------------------------CEEEEEEeC
Confidence 1233444 999888774311 23444444
Q ss_pred -CCCceecCC---------------CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-------e
Q 004475 165 -DGTAKDFGT---------------PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-------V 221 (751)
Q Consensus 165 -~G~~~~lt~---------------~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~ 221 (751)
+|....+.. ......++|||||++|++.... ...+++|+++... .
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------------~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------------TDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTCCTTTCCCC
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC------------CCEEEEEEEcCCCCcccccce
Confidence 333222210 0234679999999999887543 2356677665322 1
Q ss_pred eee---ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--
Q 004475 222 REL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-- 296 (751)
Q Consensus 222 ~~l---~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-- 296 (751)
... .... .....+++.++|||||++ ++++.. ..+.|.+++++ ++....+..
T Consensus 197 ~~~~~~~~~~---------~~~~~~~~~~~~spdg~~-l~v~~~-----------~~~~v~v~~~~---~g~~~~~~~~~ 252 (361)
T 3scy_A 197 LTKGTPEAFK---------VAPGSGPRHLIFNSDGKF-AYLINE-----------IGGTVIAFRYA---DGMLDEIQTVA 252 (361)
T ss_dssp EEEEEEEEEE---------CCTTCCEEEEEECTTSSE-EEEEET-----------TTCEEEEEEEE---TTEEEEEEEEE
T ss_pred eeccccccee---------cCCCCCCeEEEEcCCCCE-EEEEcC-----------CCCeEEEEEec---CCceEEeEEEe
Confidence 110 0000 011234568999999998 665431 22467777774 333322221
Q ss_pred -ec---eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 297 -LD---LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 297 -~~---~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
.. .... ++|||||++|+.+.......-.+|.++..++ ..+.+....... ....++|||||++|++...
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~g~-----~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLTGI-----HPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEECSS-----CCCEEEECTTSCEEEEEET
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecCCC-----CCceEEECCCCCEEEEEEC
Confidence 11 1234 8999999988765532123346666665553 323332221110 1111789999999988772
Q ss_pred ecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 372 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
. .....+|.+|.++|+.+.+
T Consensus 326 ~------------------~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 326 D------------------TNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp T------------------TTEEEEEEECTTTCCEEEC
T ss_pred C------------------CCCEEEEEEECCCCcEeec
Confidence 1 2234566688888887655
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=171.35 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=172.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+..++|||||++|||+.... ++....||++|+++|+..+.+.... ....++|| ||+.|+|.+......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~-----G~~~~~i~v~dl~tg~~~~~~~~~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA-----GSDWREIHLMDVESKQPLETPLKDV-----KFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS-----SCCEEEEEEEETTTCSEEEEEEEEE-----ESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEecC-----CCceEEEEEEECCCCCCCccccCCc-----eeccEEEe-CCCEEEEEEecCccc
Confidence 456789999999999987521 2345899999999998766532110 13577999 999999997652210
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC-c----eEEeeeeC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-A----VYTAVEPS 183 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~-~----~~~~~~~S 183 (751)
.. . .. .....+||++++ ++ +.+.+... . ....+.||
T Consensus 199 ~~----------~-~~-------------------------~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 199 SE----------L-SA-------------------------RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp ------------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred cc----------c-cc-------------------------cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 00 0 00 001258999998 44 33455433 3 35688999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
|||++|++.+.... ...++|+++++++ +.++|...... . ...|+++|++ +++..
T Consensus 243 pDg~~l~~~~~~~~---------~~~~i~~~d~~~~~~~~~~l~~~~~~-------------~-~~~~~~~g~~-l~~~t 298 (693)
T 3iuj_A 243 EDDRFLLISAANST---------SGNRLYVKDLSQENAPLLTVQGDLDA-------------D-VSLVDNKGST-LYLLT 298 (693)
T ss_dssp TTSCEEEEEEESSS---------SCCEEEEEETTSTTCCCEEEECSSSS-------------C-EEEEEEETTE-EEEEE
T ss_pred CCCCEEEEEEccCC---------CCcEEEEEECCCCCCceEEEeCCCCc-------------e-EEEEeccCCE-EEEEE
Confidence 99999999865421 1358999999765 45555432211 1 1238999999 66654
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+ ..+..|++++++.......+.++....... .|+++|+.|++.... ....+|++++++++ ..+.+.
T Consensus 299 ~~~--------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~-~g~~~l~~~d~~g~--~~~~l~ 366 (693)
T 3iuj_A 299 NRD--------APNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMV-DATARVEQFDYEGK--RVREVA 366 (693)
T ss_dssp CTT--------CTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEE-TTEEEEEEECTTSC--EEEEEC
T ss_pred CCC--------CCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEE-CCeeEEEEEECCCC--eeEEee
Confidence 221 124689999986211111245554433333 899999999987754 34468999999874 334443
Q ss_pred ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 342 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
......+.. +.+++|++.|++.... ......|+++|+++++.+.+...
T Consensus 367 ~p~~~~~~~------~~~~~d~~~l~~~~ss-----------------~~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 367 LPGLGSVSG------FNGKHDDPALYFGFEN-----------------YAQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CSSSSEEEE------CCCCTTCSCEEEEEEC-----------------SSSCCEEEEECTTTCCEEEEECC
T ss_pred cCCCceEEe------eecCCCCCEEEEEecC-----------------CCCCCEEEEEECCCCeEEEEEeC
Confidence 221111111 5678999988887632 12345899999998887766543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-15 Score=152.46 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=158.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC--CCCeeeccCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~--~g~~~~lt~~~~ 82 (751)
..|++|++.. +|+.+.+...+........+|||||++|+++.. ....|.+++++ +++.+.+.....
T Consensus 15 ~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 15 QQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---------PEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp TEEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---------TTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred CeEEEEEECC---CCcEEEeeeEecCCCCceEEECCCCCEEEEeec---------CCCeEEEEEecCCCCceeecccccc
Confidence 4689999953 154444433334445778999999999988652 12455555544 777665533221
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.. .+..++|+|||++|++..... ..|.++
T Consensus 83 ~~---~~~~~~~s~dg~~l~~~~~~~------------------------------------------------~~i~~~ 111 (343)
T 1ri6_A 83 PG---SLTHISTDHQGQFVFVGSYNA------------------------------------------------GNVSVT 111 (343)
T ss_dssp SS---CCSEEEECTTSSEEEEEETTT------------------------------------------------TEEEEE
T ss_pred CC---CCcEEEEcCCCCEEEEEecCC------------------------------------------------CeEEEE
Confidence 11 356789999999988874310 345555
Q ss_pred cC-CCC---cee-cCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeec--cCCCCCCCC
Q 004475 163 SL-DGT---AKD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELC--DLPPAEDIP 234 (751)
Q Consensus 163 ~~-~G~---~~~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~--~~~~~~~~~ 234 (751)
++ +|. ... +.....+..++|+|||++|++.... ...+++|++++ ++...+. .....
T Consensus 112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~---- 175 (343)
T 1ri6_A 112 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTV---- 175 (343)
T ss_dssp EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECS----
T ss_pred ECCCCccccccccccCCCCceEEEECCCCCEEEEecCC------------CCEEEEEEecCCCceeeecccccccC----
Confidence 55 442 222 2222456789999999999876522 24688999876 5444322 11100
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---e------ceeEE-EE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---L------DLRFS-VS 304 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~------~~~~~-~~ 304 (751)
....++.++|+|||++ ++++.. ..+.+.+++++.. .+....+.. . ..... +.
T Consensus 176 -----~~~~~~~~~~~pdg~~-l~~~~~-----------~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 176 -----EGAGPRHMVFHPNEQY-AYCVNE-----------LNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp -----TTCCEEEEEECTTSSE-EEEEET-----------TTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred -----CCCCcceEEECCCCCE-EEEEeC-----------CCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccceE
Confidence 1123457899999998 555431 2246777777422 222222111 1 11334 89
Q ss_pred EecCCceEEEeeeecccceeEEEecCC--CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPG--SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
|+|||+.|+++.. . ...|.+++++ ++ ..+.+....... ....++|+|||++|++....
T Consensus 238 ~s~dg~~l~v~~~-~--~~~i~v~d~~~~~~--~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~---------- 297 (343)
T 1ri6_A 238 ITPDGRHLYACDR-T--ASLITVFSVSEDGS--VLSKEGFQPTET-----QPRGFNVDHSGKYLIAAGQK---------- 297 (343)
T ss_dssp ECTTSSEEEEEET-T--TTEEEEEEECTTSC--CEEEEEEEECSS-----SCCCEEECTTSSEEEEECTT----------
T ss_pred ECCCCCEEEEEec-C--CCEEEEEEEcCCCC--ceEEeeeecCCC-----ccceEEECCCCCEEEEecCC----------
Confidence 9999998876542 2 2345555554 42 223332111111 01128899999988877621
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.....+|.+|.++|+.+.+.
T Consensus 298 --------~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 298 --------SHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp --------TCEEEEEEEETTTTEEEEEE
T ss_pred --------CCeEEEEEEcCCCceeeEcc
Confidence 12234555577788766553
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=160.59 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=132.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~ 590 (751)
.|+||++||.+. ....+. ......++++||.|++ .+.+|+|.+.... ....+..+|+..+++
T Consensus 43 ~~~vv~lHG~~~-----------~~~~~~---~~~~~~l~~~g~~vi~---~D~~G~G~s~~~~~~~~~~~~~~~~~~l~ 105 (293)
T 3hss_A 43 GDPVVFIAGRGG-----------AGRTWH---PHQVPAFLAAGYRCIT---FDNRGIGATENAEGFTTQTMVADTAALIE 105 (293)
T ss_dssp SEEEEEECCTTC-----------CGGGGT---TTTHHHHHHTTEEEEE---ECCTTSGGGTTCCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCC-----------chhhcc---hhhhhhHhhcCCeEEE---EccCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 588999999642 111221 1345677889999999 4555666654332 235666777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccc----------ccccch-------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT----------EFRTLW------- 653 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~----------~~~~~~------- 653 (751)
.+ +.++++++|||+||.+|+.+|.++|++++++|++++............. .....+
T Consensus 106 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
T 3hss_A 106 TL------DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLL 179 (293)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hc------CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHh
Confidence 76 2358999999999999999999999999999999987542110000000 000000
Q ss_pred --------hh---HHH----H------------------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 654 --------EA---TNV----Y------------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 654 --------~~---~~~----~------------------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
.. ... + ........+.++++|+|+++|++|..+| ...++.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~ 257 (293)
T 3hss_A 180 ENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTP--PYLGREVADAL 257 (293)
T ss_dssp HHSCHHHHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHS
T ss_pred hhcccccccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCC--HHHHHHHHHHC
Confidence 00 000 0 0011223457789999999999999998 88887777665
Q ss_pred HhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 701 KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
. .++++++++++|... .+....+.+.+.+||++
T Consensus 258 ~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 P----NGRYLQIPDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp T----TEEEEEETTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred C----CceEEEeCCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 3 468999999999875 45667888889999875
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=155.66 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=128.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~ 590 (751)
.|+||++||.+.. ...+. ....+ .+||.|++ .+.+|+|.+..... ...+..+|+.++++
T Consensus 16 ~~~vv~~hG~~~~-----------~~~~~-----~~~~l-~~g~~v~~---~d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e0x_A 16 PNTLLFVHGSGCN-----------LKIFG-----ELEKY-LEDYNCIL---LDLKGHGESKGQCPSTVYGYIDNVANFIT 75 (245)
T ss_dssp SCEEEEECCTTCC-----------GGGGT-----TGGGG-CTTSEEEE---ECCTTSTTCCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccc-----------HHHHH-----HHHHH-HhCCEEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 6899999996521 11222 11222 38999999 55667776653322 35666777777774
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEccCCCCCCCCccCccc-----------------cccc-
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTLTPFGFQT-----------------EFRT- 651 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~d~~~~~~~~~~-----------------~~~~- 651 (751)
+...+..++ +++++|||+||.+|+.++.+ +|+ ++++|+++|............. ....
T Consensus 76 ~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
T 3e0x_A 76 NSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNP 152 (245)
T ss_dssp HCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSH
T ss_pred hhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchH
Confidence 443333334 89999999999999999999 999 9999999997654111100000 0000
Q ss_pred ---------------chhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 004475 652 ---------------LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716 (751)
Q Consensus 652 ---------------~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (751)
................+.++++|+|+++|++|..+| ...++.+.+.+. .++++++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~g 226 (245)
T 3e0x_A 153 LSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTL--VEYSEIIKKEVE----NSELKIFETGK 226 (245)
T ss_dssp HHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSC--HHHHHHHHHHSS----SEEEEEESSCG
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCC--HHHHHHHHHHcC----CceEEEeCCCC
Confidence 000011122334445577889999999999999998 888887777653 47999999999
Q ss_pred CcCCccccHHHHHHHHHHHH
Q 004475 717 HVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 717 H~~~~~~~~~~~~~~~~~fl 736 (751)
|.+. .+....+.+.+.+||
T Consensus 227 H~~~-~~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 227 HFLL-VVNAKGVAEEIKNFI 245 (245)
T ss_dssp GGHH-HHTHHHHHHHHHTTC
T ss_pred cceE-EecHHHHHHHHHhhC
Confidence 9875 345666667776664
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=154.19 Aligned_cols=183 Identities=12% Similarity=0.091 Sum_probs=110.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh--CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
.|+|||+||-+ +++.++. ...+...+.+ .+|.|++ ++.+|+|. +..+++...+
T Consensus 2 mptIl~lHGf~-----------ss~~s~k--~~~l~~~~~~~~~~~~v~~---pdl~~~g~---------~~~~~l~~~~ 56 (202)
T 4fle_A 2 MSTLLYIHGFN-----------SSPSSAK--ATTFKSWLQQHHPHIEMQI---PQLPPYPA---------EAAEMLESIV 56 (202)
T ss_dssp -CEEEEECCTT-----------CCTTCHH--HHHHHHHHHHHCTTSEEEC---CCCCSSHH---------HHHHHHHHHH
T ss_pred CcEEEEeCCCC-----------CCCCccH--HHHHHHHHHHcCCCcEEEE---eCCCCCHH---------HHHHHHHHHH
Confidence 38999999931 1222211 1122334454 4599998 44445432 2233333322
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc----ccccccchhhHHHHHhcCcc
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF----QTEFRTLWEATNVYIEMSPI 665 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 665 (751)
+.+ +.++|+|+|+||||.+|+.+|.++|....+++...+..+........ ....................
T Consensus 57 ~~~------~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T 4fle_A 57 MDK------AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQ 130 (202)
T ss_dssp HHH------TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTC
T ss_pred Hhc------CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhh
Confidence 222 35789999999999999999999988777666555432211000000 00000000111111222334
Q ss_pred cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 666 THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 666 ~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+.++++|+|++||++|.+|| +.++.++++ ++++.++++++|.+.. ..++++.+.+||+
T Consensus 131 ~~~~~~~~P~LiihG~~D~~Vp--~~~s~~l~~-------~~~l~i~~g~~H~~~~---~~~~~~~I~~FL~ 190 (202)
T 4fle_A 131 IEKLESPDLLWLLQQTGDEVLD--YRQAVAYYT-------PCRQTVESGGNHAFVG---FDHYFSPIVTFLG 190 (202)
T ss_dssp CSSCSCGGGEEEEEETTCSSSC--HHHHHHHTT-------TSEEEEESSCCTTCTT---GGGGHHHHHHHHT
T ss_pred hhhhccCceEEEEEeCCCCCCC--HHHHHHHhh-------CCEEEEECCCCcCCCC---HHHHHHHHHHHHh
Confidence 4567788999999999999999 888877752 4589999999998753 3467788999996
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=150.70 Aligned_cols=213 Identities=14% Similarity=0.126 Sum_probs=134.0
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+- + .|.||++||.+. +...| ......|+++||.|++ ++.
T Consensus 3 ~~~~~g~~l~y~~~g--------~--g~~vvllHG~~~-----------~~~~w----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG--------Q--GRPVVFIHGWPL-----------NGDAW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEEC--------S--SSEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EEccCCCEEEEEecC--------C--CceEEEECCCcc-----------hHHHH----HHHHHHHHhCCCeEEE---EcC
Confidence 345567666655442 1 367999999641 11111 1345577889999999 667
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCC--
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~-- 640 (751)
+|+|.+... ........+|+.++++.+ +.+++.++||||||.+|+.+++++ |++++++|++++......
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~ 128 (274)
T 1a8q_A 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCcccccc
Confidence 788877542 223556677777777665 235899999999999999977765 899999999886421100
Q ss_pred --CccCccccc------------------------c-------c-------chhh-----H-------HHHHhcCccccc
Q 004475 641 --TPFGFQTEF------------------------R-------T-------LWEA-----T-------NVYIEMSPITHA 668 (751)
Q Consensus 641 --~~~~~~~~~------------------------~-------~-------~~~~-----~-------~~~~~~~~~~~~ 668 (751)
.+....... . . .|.. . ..+........+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 1a8q_A 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred ccCcccchHHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHh
Confidence 000000000 0 0 0000 0 001111222346
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc-ccHHHHHHHHHHHHH
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQ 737 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~ 737 (751)
.++++|+|+++|++|..+| +....+....+ ...++++++++++|..... +..+.+.+.+.+||.
T Consensus 209 ~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEEecCcCCCCC--cHHHHHHHHhh---CCCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 7889999999999999998 66443333322 1356899999999988632 167788899999984
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=151.25 Aligned_cols=205 Identities=15% Similarity=0.064 Sum_probs=135.3
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+...+|..+....+-+ .|+||++||.+.. ...+ ......|+ +||.|++ ++.
T Consensus 7 ~~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~----~~~~~~l~-~~~~vi~---~d~ 57 (262)
T 3r0v_A 7 VPSSDGTPIAFERSGS----------GPPVVLVGGALST-----------RAGG----APLAERLA-PHFTVIC---YDR 57 (262)
T ss_dssp EECTTSCEEEEEEEEC----------SSEEEEECCTTCC-----------GGGG----HHHHHHHT-TTSEEEE---ECC
T ss_pred EEcCCCcEEEEEEcCC----------CCcEEEECCCCcC-----------hHHH----HHHHHHHh-cCcEEEE---Eec
Confidence 4456777777665431 3689999996411 1111 23344555 8999999 566
Q ss_pred CCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC
Q 004475 566 IGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 566 ~g~g~~~~~~-~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~ 644 (751)
+|+|.+.... ....+..+|+.++++.+ + .+++++|||+||.+|+.++.++| +++++|+++|..........
T Consensus 58 ~G~G~S~~~~~~~~~~~~~~~~~~~~~l------~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~ 129 (262)
T 3r0v_A 58 RGRGDSGDTPPYAVEREIEDLAAIIDAA------G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPP 129 (262)
T ss_dssp TTSTTCCCCSSCCHHHHHHHHHHHHHHT------T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCC
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHHHhc------C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccch
Confidence 6777765432 23456667766666654 2 58999999999999999999999 99999999987553221110
Q ss_pred ccccc-------------------------ccchhhHHHHH------------------------hcCcccccCCCCCCE
Q 004475 645 FQTEF-------------------------RTLWEATNVYI------------------------EMSPITHANKIKKPI 675 (751)
Q Consensus 645 ~~~~~-------------------------~~~~~~~~~~~------------------------~~~~~~~~~~~~~P~ 675 (751)
..... .......+.+. .......+.++++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 209 (262)
T 3r0v_A 130 VPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPT 209 (262)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCE
T ss_pred hhhHHHHHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCE
Confidence 00000 00000000000 001234567889999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|+++|++|..+| ...+..+.+.+. .++++++++++|. +....+.+.+.+||+
T Consensus 210 lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~----~~p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 210 LVMDGGASPAWI--RHTAQELADTIP----NARYVTLENQTHT----VAPDAIAPVLVEFFT 261 (262)
T ss_dssp EEEECTTCCHHH--HHHHHHHHHHST----TEEEEECCCSSSS----CCHHHHHHHHHHHHC
T ss_pred EEEeecCCCCCC--HHHHHHHHHhCC----CCeEEEecCCCcc----cCHHHHHHHHHHHHh
Confidence 999999999998 888877776653 4689999999993 356788888999985
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=154.92 Aligned_cols=198 Identities=9% Similarity=0.010 Sum_probs=130.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
|+||++||.+. +...| ......|+++||.|++ ++.+|+|.+.... ....+..+|+.+++
T Consensus 5 ~~vv~lHG~~~-----------~~~~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l 66 (258)
T 3dqz_A 5 HHFVLVHNAYH-----------GAWIW----YKLKPLLESAGHRVTA---VELAASGIDPRPIQAVETVDEYSKPLIETL 66 (258)
T ss_dssp CEEEEECCTTC-----------CGGGG----TTHHHHHHHTTCEEEE---ECCTTSTTCSSCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCC-----------ccccH----HHHHHHHHhCCCEEEE---ecCCCCcCCCCCCCccccHHHhHHHHHHHH
Confidence 89999999642 11222 2456678889999999 6667888775432 23445555555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC------------cccc-cc------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG------------FQTE-FR------ 650 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~------------~~~~-~~------ 650 (751)
+.+ . . ..+++++|||+||.+|+.++.++|++++++|++++.......... +... ..
T Consensus 67 ~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T 3dqz_A 67 KSL---P-E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRN 141 (258)
T ss_dssp HTS---C-T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETT
T ss_pred HHh---c-c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhc
Confidence 444 2 1 268999999999999999999999999999999885432211100 0000 00
Q ss_pred ----cch----------------hhHHHH--------------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 651 ----TLW----------------EATNVY--------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 651 ----~~~----------------~~~~~~--------------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
..+ .....+ ............++|+|+++|++|..+| +..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~ 219 (258)
T 3dqz_A 142 GTMSLLKMGPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIP--CDFIRWM 219 (258)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHHHHH
T ss_pred cChhhhhhhHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeC--HHHHHHH
Confidence 000 000000 0001111222236999999999999998 8888877
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.+.+. .++++++++++|... .+....+.+.+.+|+++++
T Consensus 220 ~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 220 IDNFN----VSKVYEIDGGDHMVM-LSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp HHHSC----CSCEEEETTCCSCHH-HHSHHHHHHHHHHHHHHTC
T ss_pred HHhCC----cccEEEcCCCCCchh-hcChHHHHHHHHHHHHHhC
Confidence 77663 347899999999876 5678889999999998864
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-16 Score=162.46 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=120.7
Q ss_pred HHhCCeEEEEcCCCCCCC--CCCCCCC---------------chhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChH
Q 004475 550 FLARRFAVLAGPSIPIIG--EGDKLPN---------------DRFVEQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYG 611 (751)
Q Consensus 550 ~~~~G~~v~~~~~~~~~g--~g~~~~~---------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i-~l~G~S~G 611 (751)
|+++||.|+++| .+| +|.+... .....+..+|+.++++.+ +.+++ .|+|||||
T Consensus 85 l~~~g~~vi~~D---~~G~~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~~lvGhS~G 155 (366)
T 2pl5_A 85 FDTNQYFIICSN---VIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL------GIEKLFCVAGGSMG 155 (366)
T ss_dssp EETTTCEEEEEC---CTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEEETHH
T ss_pred ccccccEEEEec---CCCcccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc------CCceEEEEEEeCcc
Confidence 357899999944 455 5544321 123556666666666544 34688 79999999
Q ss_pred HHHHHHHHHhCCCceeEEEEccCCCCCCCCc----------------cC---c---------------------------
Q 004475 612 AFMTAHLLAHAPHLFCCGIARSGSYNKTLTP----------------FG---F--------------------------- 645 (751)
Q Consensus 612 G~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~----------------~~---~--------------------------- 645 (751)
|.+|+.+|.++|++++++|++++........ +. +
T Consensus 156 g~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (366)
T 2pl5_A 156 GMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMR 235 (366)
T ss_dssp HHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHH
T ss_pred HHHHHHHHHhCcHhhhheeEeccCccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHH
Confidence 9999999999999999999999865421000 00 0
Q ss_pred -------cc-------ccccchh-----------hH-------HHHHhcCc------ccccCCCCCCEEEEEcCCCCCCC
Q 004475 646 -------QT-------EFRTLWE-----------AT-------NVYIEMSP------ITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 646 -------~~-------~~~~~~~-----------~~-------~~~~~~~~------~~~~~~~~~P~li~~G~~D~~vp 687 (751)
.. .....+. .. ..+..... ...+.++++|+|+++|++|.++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 315 (366)
T 2pl5_A 236 EKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYP 315 (366)
T ss_dssp HHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC
T ss_pred HHhhhhhhcccccchhhhHHHHHHHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccC
Confidence 00 0000000 00 01111111 12567889999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEe-CCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 688 LFPMQAERFFDALKGHGALSRLVLL-PFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 688 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+..++.+.+.+...+..++++++ ++++|... .+....+.+.+.+||++
T Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 316 --PAQSREIVKSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKGFLEN 364 (366)
T ss_dssp --HHHHHHHHHHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhhhcccCeEEEEeCCCCCcchh-hcChhHHHHHHHHHHcc
Confidence 99999999999877667899999 89999886 45567888999999874
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=173.59 Aligned_cols=232 Identities=16% Similarity=0.129 Sum_probs=150.2
Q ss_pred EEcCCCceEEEEEEcCCCC-CCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH----hCCe---EE
Q 004475 486 YQRKDGVPLTATLYLPPGY-DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL----ARRF---AV 557 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~-~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~---~v 557 (751)
+...+|..+.+..+.|.+. .....++.|+||++||.+... ..|. .+...|+ ..|| .|
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~-----------~~~~----~~~~~L~~~~~~~G~~~~~v 89 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSK-----------VVWE----YYLPRLVAADAEGNYAIDKV 89 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCG-----------GGGG----GGGGGSCCCBTTTTEEEEEE
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcH-----------HHHH----HHHHHHHHhhhhcCcceeEE
Confidence 3356888999999987541 011123468999999975211 1121 2234455 3489 99
Q ss_pred EEcCCCCCCCCCCCCC-------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 558 LAGPSIPIIGEGDKLP-------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~-------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
++ ++.+|+|.+.. ......+..+|+.++++.+.....+++.+++++||||||.+|+.+|.++|++++++|
T Consensus 90 i~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 166 (398)
T 2y6u_A 90 LL---IDQVNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLI 166 (398)
T ss_dssp EE---ECCTTSHHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEE
T ss_pred EE---EcCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEE
Confidence 99 55667765532 122345667777777776532212344459999999999999999999999999999
Q ss_pred EccCCCCCCC--------CccC---ccc--------ccc----------------cchh--hH---HHHHh---------
Q 004475 631 ARSGSYNKTL--------TPFG---FQT--------EFR----------------TLWE--AT---NVYIE--------- 661 (751)
Q Consensus 631 ~~~~~~d~~~--------~~~~---~~~--------~~~----------------~~~~--~~---~~~~~--------- 661 (751)
+++|...... .... ... ... ..+. .+ +.+..
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (398)
T 2y6u_A 167 LIEPVVITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGD 246 (398)
T ss_dssp EESCCCSCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC----
T ss_pred EeccccccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCcccccc
Confidence 9998755311 0000 000 000 0000 00 01100
Q ss_pred -------------------c--------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 004475 662 -------------------M--------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714 (751)
Q Consensus 662 -------------------~--------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 714 (751)
+ .....+.++++|+|+++|++|.++| +..++.+.+.+. .++++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~--~~~~~~l~~~~~----~~~~~~~~~ 320 (398)
T 2y6u_A 247 DEDGGPVRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCP--PQNQLFLQKTLQ----NYHLDVIPG 320 (398)
T ss_dssp ----CCEEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEETT
T ss_pred ccCCCceEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCC--HHHHHHHHHhCC----CceEEEeCC
Confidence 0 0113456789999999999999998 888877776653 578999999
Q ss_pred CCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 715 EHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 715 ~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
++|... .+....+.+.+.+||.+++..
T Consensus 321 ~gH~~~-~e~p~~~~~~i~~fl~~~~~~ 347 (398)
T 2y6u_A 321 GSHLVN-VEAPDLVIERINHHIHEFVLT 347 (398)
T ss_dssp CCTTHH-HHSHHHHHHHHHHHHHHHHHH
T ss_pred CCccch-hcCHHHHHHHHHHHHHHHHHh
Confidence 999875 456778999999999988764
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=167.21 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.7
Q ss_pred cCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCC---CccCCCCchHHHHHHhC
Q 004475 477 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP---NEFSGMTPTSSLIFLAR 553 (751)
Q Consensus 477 ~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 553 (751)
..+..+.+.+++.+|..+.++++.|++. ++++|+||++||.|....+..+.....+ ..+.......+..|+++
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~ 158 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL----KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKE 158 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC----CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC----CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHC
Confidence 4467788999988999999999999763 3468999999997532110000000000 00000011457788999
Q ss_pred CeEEEEcCCCCCCCCCCCCCC--------chh--------------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChH
Q 004475 554 RFAVLAGPSIPIIGEGDKLPN--------DRF--------------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYG 611 (751)
Q Consensus 554 G~~v~~~~~~~~~g~g~~~~~--------~~~--------------~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~G 611 (751)
||+|+++| .+|+|.+... ..+ ....+.|+..++++|.+++.+|++||+++|||||
T Consensus 159 G~~Vl~~D---~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~G 235 (391)
T 3g8y_A 159 GYVAVAVD---NAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLG 235 (391)
T ss_dssp TCEEEECC---CTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGG
T ss_pred CCEEEEec---CCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChh
Confidence 99999954 4555554322 111 1122478999999999998899999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 612 AFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 612 G~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
|++|+.+++.. ++++++|+.+++..
T Consensus 236 G~~al~~a~~~-~~i~a~v~~~~~~~ 260 (391)
T 3g8y_A 236 TEPMMVLGVLD-KDIYAFVYNDFLCQ 260 (391)
T ss_dssp HHHHHHHHHHC-TTCCEEEEESCBCC
T ss_pred HHHHHHHHHcC-CceeEEEEccCCCC
Confidence 99999998887 57899988776544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-15 Score=152.57 Aligned_cols=299 Identities=11% Similarity=-0.013 Sum_probs=162.3
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.....+|.+|.++|+.+++...... .....++|||||+ |++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~~~------------------------------ 60 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDKED------------------------------ 60 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEEET------------------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEecC------------------------------
Confidence 3446788888888877665322211 1245789999999 77663310
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCceecCC---C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT---P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~---~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
....|+++++ +|+.+.+.. . .....++|||||++|++.... ...+.+
T Consensus 61 ----------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~------------~~~v~v 112 (347)
T 3hfq_A 61 ----------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH------------KGTAEV 112 (347)
T ss_dssp ----------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ----------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC------------CCEEEE
Confidence 0157888888 665555543 2 455678999999999887533 235777
Q ss_pred EeCC-CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce
Q 004475 214 WTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (751)
Q Consensus 214 ~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (751)
|+++ ++..+.+.........|. .......+..++|+|||+ ++++.. ..+.+++++++ . ++...
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~--l~v~~~-----------~~~~v~~~~~~-~-~g~~~ 176 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNR--LAVIDL-----------GSDKVYVYNVS-D-AGQLS 176 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSC--EEEEET-----------TTTEEEEEEEC-T-TSCEE
T ss_pred EEeCCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCc--EEEEeC-----------CCCEEEEEEEC-C-CCcEE
Confidence 8774 333443322211111111 011112345789999999 344321 22467788774 1 22333
Q ss_pred EeEe---ece-eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccc--cCCCCCCCeeeCCCCCE
Q 004475 293 ILHK---LDL-RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV--YSDPGSPMMTRTSTGTN 365 (751)
Q Consensus 293 ~l~~---~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~spDG~~ 365 (751)
.+.. ..+ ... ++|||||++|++.... ...-.+|.++..++ ..+.+........ ........++|||||++
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 2221 111 334 8999999988775532 22234555554343 2222221111000 00000112789999999
Q ss_pred EEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 366 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 366 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
|++.... ...|.+|+++ +|+.+.+...... ...+..++|||||++|++..
T Consensus 254 l~v~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 254 LYVSNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEEET--------------------TTEEEEEEECGGGCEEEEEEEECS---------SSCCCEEEECTTSSEEEEEE
T ss_pred EEEEeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---------CCCcCeEEECCCCCEEEEEE
Confidence 8776621 2367777775 3343333221110 01133478999999887765
Q ss_pred ecCCCCCeEEEEEcCCCceeEeec
Q 004475 445 ESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 445 ~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
.. ...-.+|.+|..+|+.+++..
T Consensus 305 ~~-~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 305 QN-TDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp TT-TTEEEEEEECTTTCCEEEEEE
T ss_pred cC-CCcEEEEEEeCCCCeEEeccc
Confidence 33 223446666888888776654
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-16 Score=157.88 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=135.7
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+...+.. ++..+.++.+-+.+ .|+||++||++. +...|. .....|++ ||.|++
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~~~--------~~~vv~lHG~~~-----------~~~~~~----~~~~~L~~-g~~vi~-- 98 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGPED--------APPLVLLHGALF-----------SSTMWY----PNIADWSS-KYRTYA-- 98 (306)
T ss_dssp EEEEECC-TTEEEEEEEESCTT--------SCEEEEECCTTT-----------CGGGGT----TTHHHHHH-HSEEEE--
T ss_pred ceEEEec-CCceEEEEeeCCCC--------CCeEEEECCCCC-----------CHHHHH----HHHHHHhc-CCEEEE--
Confidence 4444443 45567666654322 588999999751 112222 23445565 999999
Q ss_pred CCCCCCC-CCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 562 SIPIIGE-GDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 562 ~~~~~g~-g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
++.+|+ |.+.. ......+..+|+..+++.+ +.++++++|||+||.+|+.+|.++|++++++|+++|....
T Consensus 99 -~D~~G~gG~s~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (306)
T 2r11_A 99 -VDIIGDKNKSIPENVSGTRTDYANWLLDVFDNL------GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171 (306)
T ss_dssp -ECCTTSSSSCEECSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred -ecCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence 455566 44422 2233456666666666654 2368999999999999999999999999999999987653
Q ss_pred CCCccCccc----c------------------cccchh-hHHHH-Hh-----------------cCcccccCCCCCCEEE
Q 004475 639 TLTPFGFQT----E------------------FRTLWE-ATNVY-IE-----------------MSPITHANKIKKPILI 677 (751)
Q Consensus 639 ~~~~~~~~~----~------------------~~~~~~-~~~~~-~~-----------------~~~~~~~~~~~~P~li 677 (751)
......... . ....+. ..... .. ......+.++++|+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 251 (306)
T 2r11_A 172 LPFHHDFYKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILL 251 (306)
T ss_dssp SCCCHHHHHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEE
Confidence 211100000 0 000000 00000 00 0111234578899999
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
++|++|.++| ...+.++.+.+. ..++++++++++|... .+....+.+.+.+||+
T Consensus 252 i~G~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 252 LLGEHEVIYD--PHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp EEETTCCSSC--HHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred EEeCCCcccC--HHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 9999999998 877766655432 3568999999999865 4556788888999885
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=149.04 Aligned_cols=240 Identities=8% Similarity=0.017 Sum_probs=170.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeeccccccc----CCceeEEEEEcCCCCeeeccCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVS----SCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~----~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
..||.++.++ ...++|+. ...--++|||++|+|+...++..... .....||.+++++++.++|+..
T Consensus 37 ~~ly~~~~dg----~~~~~l~~------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~ 106 (302)
T 3s25_A 37 GRLYAMNIDG----SNIHKLSN------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106 (302)
T ss_dssp TEEEEEETTS----CSCEEEEE------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS
T ss_pred ceEEEEcCCC----CCCEEccC------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC
Confidence 3599999999 88888872 12356899999999997643111000 1357999999999998888755
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.. ..|+|+|++|+|...... ....|+
T Consensus 107 ~~---------~~~s~~g~~Iy~~~~~~~---------------------------------------------~~~~Iy 132 (302)
T 3s25_A 107 PC---------IYASLIGNYIYYLHYDTQ---------------------------------------------TATSLY 132 (302)
T ss_dssp CE---------EEEEEETTEEEEEEESSS---------------------------------------------SCEEEE
T ss_pred Cc---------cEEEEeCCEEEEEeecCC---------------------------------------------CCceEE
Confidence 43 278999999999841100 116899
Q ss_pred EEcCCC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 161 LGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 161 ~~~~~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+++++| +.++|+.... ..++|||+.|+++... ...|++.+++++..++|.....
T Consensus 133 ~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g------------~~~Iy~~~l~g~~~~~l~~~~~---------- 187 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPK------------NGQLYRYDTASQSEALFYDCNC---------- 187 (302)
T ss_dssp EEETTSCCCEEEESSCC---CCSEEETTEEEEECTT------------TCCEEEEETTTTEEEEEECSCE----------
T ss_pred EEECCCCCeEEEeCCCc---eEeeEECCEEEEEeCC------------CceEEEEECCCCCEEEEeCCCc----------
Confidence 999987 7778876633 5689999999998652 3479999999988777743211
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeec
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYK 319 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~ 319 (751)
...++|+|++ |+|+... ...+|++.+++ +...+.|+.... +.|+|+|++|+|.....
T Consensus 188 ------~~~~~P~g~~-iy~t~~~----------~~~~I~~~~ld---G~~~~~Lt~~~~---~~~~~~g~~Iy~~~~~~ 244 (302)
T 3s25_A 188 ------YKPVVLDDTN-VYYMDVN----------RDNAIVHVNIN---NPNPVVLTEANI---EHYNVYGSLIFYQRGGD 244 (302)
T ss_dssp ------EEEEEEETTE-EEEEEGG----------GTTEEEEECSS---SCCCEECSCSCE---EEEEEETTEEEEEECSS
T ss_pred ------cceeeecCCE-EEEEEcC----------CCcEEEEEECC---CCCeEEEeCCCc---ceEEECCCEEEEEECCC
Confidence 1245699999 8887521 12479999997 667777764332 57899999999876432
Q ss_pred ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
...|+.+++++. ..++|.... . ...++.+.+|+|...
T Consensus 245 --~~~i~~~~~DG~--~r~~l~~~~--~---------~~i~i~~d~Iy~td~ 281 (302)
T 3s25_A 245 --NPALCVVKNDGT--GFKELAKGE--F---------CNINVTSQYVYFTDF 281 (302)
T ss_dssp --SCEEEEEETTSC--CCEEEEESC--E---------EEEEECSSEEEEEET
T ss_pred --CcEEEEEECCCC--ccEEeeCCc--c---------ceEEEeCCEEEEEEC
Confidence 368999999994 556665432 1 446788999999873
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=155.22 Aligned_cols=203 Identities=12% Similarity=0.103 Sum_probs=130.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+..+.|.+ .|+||++||.+.. ...+ ......|+++||.|++ ++.+|+
T Consensus 11 ~~g~~l~~~~~g~~~--------~~~vv~~hG~~~~-----------~~~~----~~~~~~l~~~G~~v~~---~d~~G~ 64 (286)
T 3qit_A 11 FGGNQICLCSWGSPE--------HPVVLCIHGILEQ-----------GLAW----QEVALPLAAQGYRVVA---PDLFGH 64 (286)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCceEEEeecCCCC--------CCEEEEECCCCcc-----------cchH----HHHHHHhhhcCeEEEE---ECCCCC
Confidence 477889888886543 5899999997421 1111 2456688899999999 556677
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC
Q 004475 569 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 569 g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~ 644 (751)
|.+.... ....+..+|+..+++.+ +..+++++|||+||.+|+.++.++|++++++|++++..........
T Consensus 65 G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (286)
T 3qit_A 65 GRSSHLEMVTSYSSLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKE 138 (286)
T ss_dssp TTSCCCSSGGGCSHHHHHHHHHHHHHHS------CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---C
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHhc------CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccch
Confidence 7765432 22344555555555443 3468999999999999999999999999999999987553222100
Q ss_pred ---------------------ccccc---------ccchh--hHHHH---------------------------------
Q 004475 645 ---------------------FQTEF---------RTLWE--ATNVY--------------------------------- 659 (751)
Q Consensus 645 ---------------------~~~~~---------~~~~~--~~~~~--------------------------------- 659 (751)
+.... ...+. ....+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (286)
T 3qit_A 139 SAVNQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPG 218 (286)
T ss_dssp CHHHHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTT
T ss_pred hhhHHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhcccccccccccc
Confidence 00000 00000 00000
Q ss_pred HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHH
Q 004475 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWE 731 (751)
Q Consensus 660 ~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 731 (751)
........+.++++|+|+++|++|..+| ...+..+.+.+. .++++++++ +|... .+....+.+.
T Consensus 219 ~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~g-gH~~~-~e~p~~~~~~ 282 (286)
T 3qit_A 219 GRSQYLEMLKSIQVPTTLVYGDSSKLNR--PEDLQQQKMTMT----QAKRVFLSG-GHNLH-IDAAAALASL 282 (286)
T ss_dssp HHHHHHHHHHHCCSCEEEEEETTCCSSC--HHHHHHHHHHST----TSEEEEESS-SSCHH-HHTHHHHHHH
T ss_pred chhHHHHHHhccCCCeEEEEeCCCcccC--HHHHHHHHHHCC----CCeEEEeeC-CchHh-hhChHHHHHH
Confidence 1111122345689999999999999998 888877776653 358999999 99875 3444444433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=149.58 Aligned_cols=290 Identities=12% Similarity=-0.008 Sum_probs=170.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~ 81 (751)
...|+++|+.+ ++......++... ....++|||||++++++. .....|+++++.+++... +....
T Consensus 10 ~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 10 PDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATV---------NKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---------TTTTEEEEEETTTCCEEEEEECCB
T ss_pred CCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---------CCCCeEEEEECCCCCeEeeEEcCC
Confidence 45799999988 8776544333311 367899999999987764 344789999999888654 32221
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
..........++|||||++|++.......... . +. .....|++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~--------------~---------~~--------------~~~~~i~v 119 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELT--------------H---------FE--------------VQPTRVAL 119 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSS--------------C---------EE--------------ECCCEEEE
T ss_pred cccccccccceEECCCCCEEEEEecccccccc--------------c---------cc--------------ccCceEEE
Confidence 00000024578999999999887421000000 0 00 00157899
Q ss_pred EcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+|+ +++. +.+........++|||||++|++. . ..+++||+++++..........
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~-------------~~i~~~d~~~~~~~~~~~~~~~--------- 175 (337)
T 1pby_B 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--G-------------RDLHVMDPEAGTLVEDKPIQSW--------- 175 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--S-------------SSEEEEETTTTEEEEEECSTTT---------
T ss_pred EECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--C-------------CeEEEEECCCCcEeeeeecccc---------
Confidence 999 5543 333333456678899999999887 1 2589999987765433221110
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCC------------CCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EE
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRG------------DANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VS 304 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~ 304 (751)
...+.|+|||+. +++....+.. ...........|++++++ ++....+. ....... +.
T Consensus 176 ----~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~~~~ 247 (337)
T 1pby_B 176 ----EAETYAQPDVLA-VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAMREVRIMDVFYFSTA 247 (337)
T ss_dssp ----TTTTBCCCBCCC-CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT---TCCEEEEEEEECSSCEEEEE
T ss_pred ----CCCceeCCCccE-EeeeccCCCceeeeeeccccccccccccccccceEEEeCC---CCCceEeecCCCCCceeeEE
Confidence 113488999987 4432211000 000000111267888885 33333222 2223344 89
Q ss_pred EecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEcc
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 384 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 384 (751)
|+|||+.|+.. ...|+++++.++ +......... .... ++|+|||++|++...
T Consensus 248 ~s~dg~~l~~~------~~~v~~~d~~~~--~~~~~~~~~~-~~~~------~~~s~dg~~l~~~~~------------- 299 (337)
T 1pby_B 248 VNPAKTRAFGA------YNVLESFDLEKN--ASIKRVPLPH-SYYS------VNVSTDGSTVWLGGA------------- 299 (337)
T ss_dssp ECTTSSEEEEE------ESEEEEEETTTT--EEEEEEECSS-CCCE------EEECTTSCEEEEESB-------------
T ss_pred ECCCCCEEEEe------CCeEEEEECCCC--cCcceecCCC-ceee------EEECCCCCEEEEEcC-------------
Confidence 99999998776 257899998874 2222222111 1111 789999998877642
Q ss_pred CCCCCCCCCceeEEEecCCCceeEEee
Q 004475 385 RGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 385 ~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
...|.+||+++++....+.
T Consensus 300 --------~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 300 --------LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp --------SSEEEEEETTTCCEEEEEE
T ss_pred --------CCcEEEEECcCCcEEEEEE
Confidence 2378899999887655443
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=157.73 Aligned_cols=197 Identities=15% Similarity=0.124 Sum_probs=131.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----h--hHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----R--FVEQLVSSA 585 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----~--~~~~~~~d~ 585 (751)
.|+||++||.+.. ...+. .....|++ ||.|++ .+.+|+|.+.... . ...+..+|+
T Consensus 28 ~~~vv~lHG~~~~-----------~~~~~----~~~~~l~~-g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 88 (282)
T 3qvm_A 28 EKTVLLAHGFGCD-----------QNMWR----FMLPELEK-QFTVIV---FDYVGSGQSDLESFSTKRYSSLEGYAKDV 88 (282)
T ss_dssp SCEEEEECCTTCC-----------GGGGT----TTHHHHHT-TSEEEE---CCCTTSTTSCGGGCCTTGGGSHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------cchHH----HHHHHHhc-CceEEE---EecCCCCCCCCCCCCccccccHHHHHHHH
Confidence 3899999996421 11222 23455555 999999 6667777765432 1 345556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccc---------------c
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF---------------R 650 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~---------------~ 650 (751)
.++++.+ +..+++++|||+||.+|+.++.++|++++++|+++|..........+.... .
T Consensus 89 ~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (282)
T 3qvm_A 89 EEILVAL------DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNY 162 (282)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcch
Confidence 6665554 346899999999999999999999999999999998643221100000000 0
Q ss_pred cchh---------------------------hH-------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 651 TLWE---------------------------AT-------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 651 ~~~~---------------------------~~-------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
..|. .. ...........+.++++|+|+++|++|..+| ...+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~ 240 (282)
T 3qvm_A 163 IGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLAS--PEVGQYM 240 (282)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCC--HHHHHHH
T ss_pred hhHHHHHHhhccCCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCC--HHHHHHH
Confidence 0000 00 0011122334567789999999999999998 8888777
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
.+.+. .++++++++++|... .+....+.+.+.+||.++.
T Consensus 241 ~~~~~----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 241 AENIP----NSQLELIQAEGHCLH-MTDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHC-
T ss_pred HHhCC----CCcEEEecCCCCccc-ccCHHHHHHHHHHHHHhcC
Confidence 76653 468999999999976 4557788999999998764
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=159.09 Aligned_cols=193 Identities=14% Similarity=0.100 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc----hhHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~d~~~ 587 (751)
.|+||++||.+.. ...+.. ....|++ ||.|++ ++.+|+|.+.... ....+..+|+.+
T Consensus 23 ~~~vv~~HG~~~~-----------~~~~~~----~~~~L~~-~~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 83 (278)
T 3oos_A 23 GPPLCVTHLYSEY-----------NDNGNT----FANPFTD-HYSVYL---VNLKGCGNSDSAKNDSEYSMTETIKDLEA 83 (278)
T ss_dssp SSEEEECCSSEEC-----------CTTCCT----TTGGGGG-TSEEEE---ECCTTSTTSCCCSSGGGGSHHHHHHHHHH
T ss_pred CCeEEEEcCCCcc-----------hHHHHH----HHHHhhc-CceEEE---EcCCCCCCCCCCCCcccCcHHHHHHHHHH
Confidence 4789999997421 122221 2234444 999999 5666787775432 124455565555
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----cCccccc------------c
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----FGFQTEF------------R 650 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-----~~~~~~~------------~ 650 (751)
+++.+ +.++++++|||+||.+|+.++.++|++++++|+.++........ ....... .
T Consensus 84 ~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (278)
T 3oos_A 84 IREAL------YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALND 157 (278)
T ss_dssp HHHHT------TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTC
T ss_pred HHHHh------CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcc
Confidence 55544 33589999999999999999999999999999999875511000 0000000 0
Q ss_pred ------------cch-------------------------hhHHHHH-----hcCcccccCCCCCCEEEEEcCCCCCCCC
Q 004475 651 ------------TLW-------------------------EATNVYI-----EMSPITHANKIKKPILIIHGEVDDKVGL 688 (751)
Q Consensus 651 ------------~~~-------------------------~~~~~~~-----~~~~~~~~~~~~~P~li~~G~~D~~vp~ 688 (751)
..| .....+. ..+....+.++++|+|+++|++|..+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~- 236 (278)
T 3oos_A 158 DSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCP- 236 (278)
T ss_dssp TTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSC-
T ss_pred cccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCC-
Confidence 000 0000011 122234567889999999999999998
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...++.+.+.+ ..++++++++++|... .+....+.+.+.+||
T Consensus 237 -~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 237 -YIFSCEIANLI----PNATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp -HHHHHHHHHHS----TTEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred -HHHHHHHHhhC----CCcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 88888887766 3579999999999975 456667777777764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=148.60 Aligned_cols=287 Identities=10% Similarity=0.062 Sum_probs=163.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+|||||+.|+-.+.. ..+--...+++++...... ..... ........+..++|+||++ |+..+.+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~----~~r~Wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~-l~~~s~d--- 102 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSL----SGRCWAGSLWLFKDPCAAPNEGFCS-AGVQTEAGVADLTWVGERG-ILVASDS--- 102 (344)
T ss_dssp EEEEEEECTTSCEEEEEECC----SSSCCCEEEEEESSGGGTTCGGGCS-EEEEESSCEEEEEEETTTE-EEEEETT---
T ss_pred CEEEEEECCCCCEEEEEeCC----ceEEeeceeeeeccccccCCcceee-eeeccCCCEEEEEEeCCCe-EEEEECC---
Confidence 46789999999999875421 0001124555554322111 11100 0000112477899999975 5544332
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-e----cCCC-ceEEeeeeC
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-D----FGTP-AVYTAVEPS 183 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~----lt~~-~~~~~~~~S 183 (751)
..|.++|+ +|+.. . +..+ ..+..++||
T Consensus 103 ----------------------------------------------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s 136 (344)
T 4gqb_B 103 ----------------------------------------------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL 136 (344)
T ss_dssp ----------------------------------------------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC
T ss_pred ----------------------------------------------CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC
Confidence 46777777 55321 1 1223 678899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|||++|+..+.+ ..|.+||+.+++..... ......+..+.|+|+++.+++-.+
T Consensus 137 pdg~~l~sgs~d-------------~~i~iwd~~~~~~~~~~------------~~h~~~V~~~~~~~~~~~~l~s~s-- 189 (344)
T 4gqb_B 137 SSGTQAVSGSKD-------------ICIKVWDLAQQVVLSSY------------RAHAAQVTCVAASPHKDSVFLSCS-- 189 (344)
T ss_dssp TTSSEEEEEETT-------------SCEEEEETTTTEEEEEE------------CCCSSCEEEEEECSSCTTEEEEEE--
T ss_pred CCCCEEEEEeCC-------------CeEEEEECCCCcEEEEE------------cCcCCceEEEEecCCCCCceeeec--
Confidence 999999876543 35889999877544221 112234668999999988334333
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCce-EEEeeeecccceeEEEecCCCCCCccee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+.|.++|+.. +.....+. .....+. +.|+|++.. |+... ....|.+.|+.++ +...
T Consensus 190 ----------~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~----~dg~v~~wd~~~~--~~~~ 251 (344)
T 4gqb_B 190 ----------EDNRILLWDTRC--PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD----ENGTVSLVDTKST--SCVL 251 (344)
T ss_dssp ----------TTSCEEEEETTS--SSCEEECC----CCCEEEEEECSSCTTEEEEEE----TTSEEEEEESCC----CCE
T ss_pred ----------cccccccccccc--cceeeeeecceeeccceeeeecCCCCcceEEec----cCCcEEEEECCCC--cEEE
Confidence 235788888751 22223332 1223345 899997655 44433 2245667777764 2222
Q ss_pred eeecccccccCCCCCCCeeeCCCCCE-EEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhh
Q 004475 340 LFDRVFENVYSDPGSPMMTRTSTGTN-VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 418 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~spDG~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 418 (751)
........+.. ++|||||.. |+..+.+ ..|++||+.+++..++.....
T Consensus 252 ~~~~h~~~v~~------v~fsp~g~~~lasgs~D---------------------~~i~vwd~~~~~~~~~~~H~~---- 300 (344)
T 4gqb_B 252 SSAVHSQCVTG------LVFSPHSVPFLASLSED---------------------CSLAVLDSSLSELFRSQAHRD---- 300 (344)
T ss_dssp EEECCSSCEEE------EEECSSSSCCEEEEETT---------------------SCEEEECTTCCEEEEECCCSS----
T ss_pred EEcCCCCCEEE------EEEccCCCeEEEEEeCC---------------------CeEEEEECCCCcEEEEcCCCC----
Confidence 22222233333 889999964 5555522 268999999887655432221
Q ss_pred hceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 419 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 419 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
.+.. ++||||++.|+.+..... .|.++++.+
T Consensus 301 -~V~~-------v~~sp~~~~llas~s~D~---~v~~w~v~~ 331 (344)
T 4gqb_B 301 -FVRD-------ATWSPLNHSLLTTVGWDH---QVVHHVVPT 331 (344)
T ss_dssp -CEEE-------EEECSSSTTEEEEEETTS---CEEEEECCC
T ss_pred -CEEE-------EEEeCCCCeEEEEEcCCC---eEEEEECCC
Confidence 1222 589999998887765433 466677654
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=155.84 Aligned_cols=199 Identities=10% Similarity=0.011 Sum_probs=130.4
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~ 587 (751)
..|+||++||.+. +...| ......|+++||.|++ ++.+|+|.+.... ....+..+|+.+
T Consensus 11 ~~~~vvllHG~~~-----------~~~~~----~~~~~~l~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~ 72 (267)
T 3sty_A 11 VKKHFVLVHAAFH-----------GAWCW----YKIVALMRSSGHNVTA---LDLGASGINPKQALQIPNFSDYLSPLME 72 (267)
T ss_dssp CCCEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHH
T ss_pred CCCeEEEECCCCC-----------CcchH----HHHHHHHHhcCCeEEE---eccccCCCCCCcCCccCCHHHHHHHHHH
Confidence 3689999999641 11112 2456677888999999 6667888775542 234555565555
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc--------------cC---cc--cc
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--------------FG---FQ--TE 648 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~--------------~~---~~--~~ 648 (751)
+++.+ . +..++.++||||||.+|+.++.++|++++++|++++........ +. +. ..
T Consensus 73 ~l~~l---~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T 3sty_A 73 FMASL---P--ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENG 147 (267)
T ss_dssp HHHTS---C--TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTC
T ss_pred HHHhc---C--CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhh
Confidence 55544 1 34689999999999999999999999999999988864321100 00 00 00
Q ss_pred ----cccch----------------hhHHH---------------HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 649 ----FRTLW----------------EATNV---------------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 649 ----~~~~~----------------~~~~~---------------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
....+ ..... +............++|+|+++|++|..+| +..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~ 225 (267)
T 3sty_A 148 PTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALK--KEFL 225 (267)
T ss_dssp TTSCCCEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHH--HHHH
T ss_pred hhcccchhhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccC--HHHH
Confidence 00000 00000 11111111122235999999999999998 7887
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.+.+.+. .++++++++++|... .+..+.+.+.+.+|++++
T Consensus 226 ~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 226 KLMIEKNP----PDEVKEIEGSDHVTM-MSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp HHHHHHSC----CSEEEECTTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC----CceEEEeCCCCcccc-ccChHHHHHHHHHHHHhc
Confidence 77776653 368999999999876 567788999999999864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-15 Score=150.60 Aligned_cols=248 Identities=12% Similarity=0.100 Sum_probs=158.8
Q ss_pred cceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
...|.+|++.+ ++......+.. ...+....|+||++.++..+ ....|.++++.+++.........
T Consensus 57 D~~v~vW~~~~----~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s----------~D~~i~lWd~~~~~~~~~~~~~~ 122 (321)
T 3ow8_A 57 DDLVKVWKWRD----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSS----------LDAHIRLWDLENGKQIKSIDAGP 122 (321)
T ss_dssp TSCEEEEEEET----TEEEEEEEECCCSSCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCEEEEECCC----CCeeeeeeeccCCCCEEEEEECCCCCEEEEEe----------CCCcEEEEECCCCCEEEEEeCCC
Confidence 34688888876 54332211222 23578899999999888753 34688888998876443322221
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
. .+..++|+|||++|+..+.+ ..+.++
T Consensus 123 ~----~~~~~~~spdg~~l~~g~~d-------------------------------------------------g~v~i~ 149 (321)
T 3ow8_A 123 V----DAWTLAFSPDSQYLATGTHV-------------------------------------------------GKVNIF 149 (321)
T ss_dssp T----CCCCEEECTTSSEEEEECTT-------------------------------------------------SEEEEE
T ss_pred c----cEEEEEECCCCCEEEEEcCC-------------------------------------------------CcEEEE
Confidence 1 25678999999999887432 467777
Q ss_pred cC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++ +++ ...+... ..+..++|+|||++|+....+ ..+.+||+.+++...... .
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~------------~ 204 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-------------GIINIFDIATGKLLHTLE------------G 204 (321)
T ss_dssp ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC------------C
T ss_pred EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCcEEEEEc------------c
Confidence 77 553 3334334 667899999999999876543 358899998765432211 1
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..++|+|||+. |+..+ ..+.|.++++.. +.....+......+. ++|+|||+.|+.++.
T Consensus 205 h~~~v~~l~~spd~~~-l~s~s------------~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 268 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQL-LVTAS------------DDGYIKIYDVQH--ANLAGTLSGHASWVLNVAFCPDDTHFVSSSS- 268 (321)
T ss_dssp CSSCCCEEEECTTSCE-EEEEC------------TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred cCCceeEEEEcCCCCE-EEEEc------------CCCeEEEEECCC--cceeEEEcCCCCceEEEEECCCCCEEEEEeC-
Confidence 1223568999999997 55543 235788888751 223334444555667 999999998887652
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...|.+.++.++ ............++. ++|+|||+.|+..+
T Consensus 269 ---D~~v~iwd~~~~--~~~~~~~~h~~~v~~------v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 269 ---DKSVKVWDVGTR--TCVHTFFDHQDQVWG------VKYNGNGSKIVSVG 309 (321)
T ss_dssp ---TSCEEEEETTTT--EEEEEECCCSSCEEE------EEECTTSSEEEEEE
T ss_pred ---CCcEEEEeCCCC--EEEEEEcCCCCcEEE------EEECCCCCEEEEEe
Confidence 235666676664 222222222223333 88999999988777
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=155.73 Aligned_cols=196 Identities=18% Similarity=0.155 Sum_probs=129.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC----Cc--hhHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP----ND--RFVEQLVSSA 585 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~----~~--~~~~~~~~d~ 585 (751)
.|+||++||.+.. ...+. .....|++ ||.|++ ++.+|+|.+.. .. ....+..+|+
T Consensus 20 ~p~vv~~HG~~~~-----------~~~~~----~~~~~l~~-g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 80 (269)
T 4dnp_A 20 ERVLVLAHGFGTD-----------QSAWN----RILPFFLR-DYRVVL---YDLVCAGSVNPDFFDFRRYTTLDPYVDDL 80 (269)
T ss_dssp SSEEEEECCTTCC-----------GGGGT----TTGGGGTT-TCEEEE---ECCTTSTTSCGGGCCTTTCSSSHHHHHHH
T ss_pred CCEEEEEeCCCCc-----------HHHHH----HHHHHHhC-CcEEEE---EcCCCCCCCCCCCCCccccCcHHHHHHHH
Confidence 4899999996421 12222 22334445 999999 56667777643 11 1245566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-c--Cccccc-----------cc
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-F--GFQTEF-----------RT 651 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~--~~~~~~-----------~~ 651 (751)
.++++.+ +.++++++|||+||.+|+.++.++|++++++|++++........ + .+.... ..
T Consensus 81 ~~~~~~~------~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (269)
T 4dnp_A 81 LHILDAL------GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYE 154 (269)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhc------CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHH
Confidence 6666554 34589999999999999999999999999999999864321110 0 000000 00
Q ss_pred ch-----------------h----------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 652 LW-----------------E----------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 652 ~~-----------------~----------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
.| . ....+........+.++++|+|+++|++|..+| ...++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~ 232 (269)
T 4dnp_A 155 AWVNGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVP--ASVATYLKN 232 (269)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBC--HHHHHHHHH
T ss_pred HHHHHhhhhhccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccC--HHHHHHHHH
Confidence 00 0 000111223344567889999999999999998 888888877
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+.. .++++++++++|... .+....+.+.+.+||.+
T Consensus 233 ~~~~---~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 233 HLGG---KNTVHWLNIEGHLPH-LSAPTLLAQELRRALSH 268 (269)
T ss_dssp HSSS---CEEEEEEEEESSCHH-HHCHHHHHHHHHHHHC-
T ss_pred hCCC---CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHhh
Confidence 6642 279999999999875 45677888888898865
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=166.11 Aligned_cols=222 Identities=12% Similarity=0.122 Sum_probs=135.6
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCC----chHHHHHH
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT----PTSSLIFL 551 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 551 (751)
...+..+.+.+.+.+|..+.++++.|++. ++++|+||++||+|.......+ ..+....+...+ ...+..|+
T Consensus 87 ~~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vv~~HG~g~~~~~~~~-~~g~~~~~~~~y~~~~~~~a~~la 161 (398)
T 3nuz_A 87 REGYRLEKWEFYPLPKCVSTFLVLIPDNI----NKPVPAILCIPGSGGNKEGLAG-EPGIAPKLNDRYKDPKLTQALNFV 161 (398)
T ss_dssp CSSEEEEEEEECCSTTBCEEEEEEEESSC----CSCEEEEEEECCTTCCHHHHHT-CCCSSSTTCCSTTCTTTCHHHHHH
T ss_pred cCCEEEEEEEEEcCCCcEEEEEEEeCCCC----CCCccEEEEEcCCCCCcccccc-cccccccccccccchHHHHHHHHH
Confidence 34467888999998999999999999763 3468999999997532110000 000000010111 14677899
Q ss_pred hCCeEEEEcCCCCCCCCCCCCCCc----------------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 004475 552 ARRFAVLAGPSIPIIGEGDKLPND----------------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHS 609 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~~~~----------------------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S 609 (751)
++||+|+++|+ +|+|.+.... ........|+..+++||.+++.+|++||+|+|||
T Consensus 162 ~~Gy~Vl~~D~---rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S 238 (398)
T 3nuz_A 162 KEGYIAVAVDN---PAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFS 238 (398)
T ss_dssp TTTCEEEEECC---TTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEG
T ss_pred HCCCEEEEecC---CCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEC
Confidence 99999999554 4555442111 1223345899999999999988999999999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEEccCCCCCCCC--ccC---------cccccccchhhHHHHHhcCcccccCC-CCCCEEE
Q 004475 610 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--PFG---------FQTEFRTLWEATNVYIEMSPITHANK-IKKPILI 677 (751)
Q Consensus 610 ~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li 677 (751)
|||++|+.+++.. ++++++|+.+++...... ... +....... .+......+....+.. ...|+|+
T Consensus 239 ~GG~~a~~~aa~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~ap~PlLi 315 (398)
T 3nuz_A 239 LGTEPMMVLGTLD-TSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHL--IPDFWKNFNFPDIVAALAPRPIIL 315 (398)
T ss_dssp GGHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGC--CTTHHHHCCHHHHHHHTTTSCEEE
T ss_pred HhHHHHHHHHhcC-CcEEEEEEecccccchhhhhhhccccccccccCCccHHHh--cchHhhhCCHHHHHHhhCCCcEEE
Confidence 9999999998887 578888886554321000 000 00000000 0000111111111111 1369999
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP 713 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~ 713 (751)
+||+.|.. ...++++++.+.. ..++++.+||
T Consensus 316 i~G~~D~~----v~~~~~~y~~~g~-~~~~~~~~~p 346 (398)
T 3nuz_A 316 TEGGLDRD----LDLVRKAYAIVGT-PDNVKIYHYK 346 (398)
T ss_dssp CSCBCHHH----HHHHHHHHHHHTC-TTSEEECCCG
T ss_pred eeCCchHH----HHHHHHHHHHcCC-CcceEEEEeC
Confidence 99999955 4566666665533 3567888777
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=157.21 Aligned_cols=200 Identities=14% Similarity=0.146 Sum_probs=131.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v 589 (751)
.|+||++||.+.. ...+ ......|+. +||.|++ ++.+|+|.+.... ....+..+|+.+++
T Consensus 21 ~~~vv~lhG~~~~-----------~~~~----~~~~~~l~~~~g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~l 82 (272)
T 3fsg_A 21 GTPIIFLHGLSLD-----------KQST----CLFFEPLSNVGQYQRIY---LDLPGMGNSDPISPSTSDNVLETLIEAI 82 (272)
T ss_dssp SSEEEEECCTTCC-----------HHHH----HHHHTTSTTSTTSEEEE---ECCTTSTTCCCCSSCSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCc-----------HHHH----HHHHHHHhccCceEEEE---ecCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4789999996411 0111 112223444 6999999 5666777765433 34566677777777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcc-----------c----cc-----
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQ-----------T----EF----- 649 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~-----------~----~~----- 649 (751)
+.+. +..+++++|||+||.+|+.++.++|++++++|+++|............ . ..
T Consensus 83 ~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (272)
T 3fsg_A 83 EEII-----GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFL 157 (272)
T ss_dssp HHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHH
T ss_pred HHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHH
Confidence 7642 236899999999999999999999999999999998753211100000 0 00
Q ss_pred -------ccchhhH-------------HHHHh---c-----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 650 -------RTLWEAT-------------NVYIE---M-----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 650 -------~~~~~~~-------------~~~~~---~-----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
...+... ..... . .+...+.++++|+|+++|++|..+| +..++++.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~- 234 (272)
T 3fsg_A 158 SMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVG--YQEQLKLINHN- 234 (272)
T ss_dssp HHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTC--SHHHHHHHTTC-
T ss_pred HHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCC--HHHHHHHHHhc-
Confidence 0000000 00000 0 0011346789999999999999998 78777666544
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
..++++++++++|.+. .+....+.+.+.+||++...
T Consensus 235 ---~~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~~~ 270 (272)
T 3fsg_A 235 ---ENGEIVLLNRTGHNLM-IDQREAVGFHFDLFLDELNS 270 (272)
T ss_dssp ---TTEEEEEESSCCSSHH-HHTHHHHHHHHHHHHHHHHC
T ss_pred ---CCCeEEEecCCCCCch-hcCHHHHHHHHHHHHHHhhc
Confidence 3579999999999976 45678889999999988654
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=149.84 Aligned_cols=211 Identities=17% Similarity=0.159 Sum_probs=139.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+..+-|.+ .+.|+||++||.+. +...|. .+...|+ .+|.|++ ++.+|+
T Consensus 9 ~~g~~l~y~~~g~~~------~~~~~vvllHG~~~-----------~~~~~~----~~~~~L~-~~~~vi~---~D~~G~ 63 (266)
T 2xua_A 9 VNGTELHYRIDGERH------GNAPWIVLSNSLGT-----------DLSMWA----PQVAALS-KHFRVLR---YDTRGH 63 (266)
T ss_dssp CSSSEEEEEEESCSS------SCCCEEEEECCTTC-----------CGGGGG----GGHHHHH-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcCCcc------CCCCeEEEecCccC-----------CHHHHH----HHHHHHh-cCeEEEE---ecCCCC
Confidence 467788877775432 01478999999541 111121 2344554 5699999 667788
Q ss_pred CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cC-
Q 004475 569 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FG- 644 (751)
Q Consensus 569 g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~~- 644 (751)
|.+... ........+|+.++++.+. .+++.++||||||.+|+.+|.++|++++++|+.++........ +.
T Consensus 64 G~S~~~~~~~~~~~~~~dl~~~l~~l~------~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 137 (266)
T 2xua_A 64 GHSEAPKGPYTIEQLTGDVLGLMDTLK------IARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVP 137 (266)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHTT------CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcC------CCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHH
Confidence 877542 2335667777777777652 3589999999999999999999999999999998754321100 00
Q ss_pred ---------ccc---ccccch-----h--hH---------------H-------HHHhcCcccccCCCCCCEEEEEcCCC
Q 004475 645 ---------FQT---EFRTLW-----E--AT---------------N-------VYIEMSPITHANKIKKPILIIHGEVD 683 (751)
Q Consensus 645 ---------~~~---~~~~~~-----~--~~---------------~-------~~~~~~~~~~~~~~~~P~li~~G~~D 683 (751)
... .....| . .+ . .+........+.++++|+|+++|++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D 217 (266)
T 2xua_A 138 RAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHD 217 (266)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTC
T ss_pred HHHHHHhcChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCC
Confidence 000 000000 0 00 0 01112233456778999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 684 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 684 ~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..+| +..++.+.+.+. ..++++++ ++|... .+..+.+.+.+.+||.+
T Consensus 218 ~~~~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 218 LAAT--PAQGRELAQAIA----GARYVELD-ASHISN-IERADAFTKTVVDFLTE 264 (266)
T ss_dssp SSSC--HHHHHHHHHHST----TCEEEEES-CCSSHH-HHTHHHHHHHHHHHHTC
T ss_pred CcCC--HHHHHHHHHhCC----CCEEEEec-CCCCch-hcCHHHHHHHHHHHHHh
Confidence 9998 888877776654 34899999 999876 45577888899999863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-14 Score=147.89 Aligned_cols=309 Identities=9% Similarity=0.010 Sum_probs=185.8
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
..+...+|||||++||... ..+.|.++++.+++.......... .+..++|+|||+.|+..+.+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~d--- 95 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCS----------KDSSASVWYSLNGERLGTLDGHTG----TIWSIDVDCFTKYCVTGSAD--- 95 (369)
T ss_dssp SCEEEEEECTTSCEEEEEE----------SSSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEETT---
T ss_pred ceEEEEEEcCCCCEEEEEe----------CCCEEEEEeCCCchhhhhhhhcCC----cEEEEEEcCCCCEEEEEeCC---
Confidence 3688999999999998853 336788889888875544332221 47789999999999877442
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCCceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~ 188 (751)
..|.++++ +++. ..+.....+..++|+|||++
T Consensus 96 ----------------------------------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 129 (369)
T 3zwl_B 96 ----------------------------------------------YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY 129 (369)
T ss_dssp ----------------------------------------------TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSE
T ss_pred ----------------------------------------------CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCE
Confidence 47888888 6643 33443377889999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCc--cCCCceeeeecCCCceEEEEEeccC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSV--REGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~--~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
|++..... ......+.+|++...... .+...... ....+... ...+..++|+|||+. ++...
T Consensus 130 l~~~~~~~--------~~~~g~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~---- 194 (369)
T 3zwl_B 130 FLAILDNV--------MKNPGSINIYEIERDSATHELTKVSEE--PIHKIITHEGLDAATVAGWSTKGKY-IIAGH---- 194 (369)
T ss_dssp EEEEECCB--------TTBCCEEEEEEEEECTTTCCEEEECSS--CSEEEECCTTCCCEEEEEECGGGCE-EEEEE----
T ss_pred EEEecCCc--------cCCCCEEEEEEecCCccceeecccccc--eeeeccCCcCccceeEEEEcCCCCE-EEEEc----
Confidence 98875441 111356888887644221 11110000 00000111 114668999999998 55543
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
..+.|+++++.. .......+......+. +.|+||++.|+.... ...|.++++.++ .........
T Consensus 195 --------~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~--~~~~~~~~~ 259 (369)
T 3zwl_B 195 --------KDGKISKYDVSN-NYEYVDSIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTL--QVLKKYETD 259 (369)
T ss_dssp --------TTSEEEEEETTT-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTC--CEEEEEECS
T ss_pred --------CCCEEEEEECCC-CcEeEEEEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCC--ceeeeecCC
Confidence 235788888851 1122333444556677 999999999887652 346777888774 222222211
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 424 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 424 (751)
..... ++|+|+|+.|++...+. ...+.... .......+.+||..+++.......... .+.
T Consensus 260 -~~~~~------~~~~~~~~~l~~~~~~~--~~~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~-- 319 (369)
T 3zwl_B 260 -CPLNT------AVITPLKEFIILGGGQE--AKDVTTTS-----ANEGKFEARFYHKIFEEEIGRVQGHFG----PLN-- 319 (369)
T ss_dssp -SCEEE------EEECSSSSEEEEEECCC--------------------CEEEEEETTTCCEEEEEECCSS----CEE--
T ss_pred -CCcee------EEecCCCceEEEeecCC--CceEEEEe-----cCCCcceeEEEecCCCcchhheecccC----cEE--
Confidence 11111 78999999998887431 01111100 112234788999988876555443211 122
Q ss_pred ecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 425 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 425 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
.++|+||++.|+... . -+.+.++++..+
T Consensus 320 -----~~~~s~~~~~l~s~~-~---dg~v~iw~~~~~ 347 (369)
T 3zwl_B 320 -----TVAISPQGTSYASGG-E---DGFIRLHHFEKS 347 (369)
T ss_dssp -----EEEECTTSSEEEEEE-T---TSEEEEEEECHH
T ss_pred -----EEEECCCCCEEEEEc-C---CCeEEEEECccc
Confidence 258999999777553 2 246888887654
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-16 Score=145.36 Aligned_cols=185 Identities=11% Similarity=-0.079 Sum_probs=116.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
.|+||++||.+... .....+.......|+++ ||.|++++. +|++.. ....+ ++
T Consensus 4 ~p~vv~lHG~~~~~-----------~~~~~~~~~~~~~l~~~~g~~vi~~d~---~g~~~~--------~~~~~----~~ 57 (194)
T 2qs9_A 4 PSKAVIVPGNGGGD-----------VTTHGWYGWVKKELEKIPGFQCLAKNM---PDPITA--------RESIW----LP 57 (194)
T ss_dssp CCEEEEECCSSSSC-----------TTTSTTHHHHHHHHTTSTTCCEEECCC---SSTTTC--------CHHHH----HH
T ss_pred CCEEEEECCCCCCC-----------cccchHHHHHHHHHhhccCceEEEeeC---CCCCcc--------cHHHH----HH
Confidence 68999999974210 00111222245566676 999999554 443211 11222 33
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCC
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANK 670 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (751)
.+.+.-.+ ..+++++||||||.+|+.++.++| ++++|++++......... ...... +........+..
T Consensus 58 ~~~~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~ 125 (194)
T 2qs9_A 58 FMETELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN---ERASGY------FTRPWQWEKIKA 125 (194)
T ss_dssp HHHHTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH---HHHTST------TSSCCCHHHHHH
T ss_pred HHHHHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh---hHHHhh------hcccccHHHHHh
Confidence 33333222 268999999999999999999998 999999998754211100 000000 000011122333
Q ss_pred CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 671 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 671 ~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+.+|+|+++|++|..+| +..++.+.+.+ . .++.++++++|.+. .+.. +.+..+++||++.....
T Consensus 126 ~~~p~lii~G~~D~~vp--~~~~~~~~~~~-~----~~~~~~~~~gH~~~-~~~p-~~~~~~~~fl~~~~~~~ 189 (194)
T 2qs9_A 126 NCPYIVQFGSTDDPFLP--WKEQQEVADRL-E----TKLHKFTDCGHFQN-TEFH-ELITVVKSLLKVPALEH 189 (194)
T ss_dssp HCSEEEEEEETTCSSSC--HHHHHHHHHHH-T----CEEEEESSCTTSCS-SCCH-HHHHHHHHHHTCCCCCC
T ss_pred hCCCEEEEEeCCCCcCC--HHHHHHHHHhc-C----CeEEEeCCCCCccc-hhCH-HHHHHHHHHHHhhhhhh
Confidence 56799999999999999 99999888887 2 38999999999976 3433 45566779998776543
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-15 Score=154.12 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=153.4
Q ss_pred CceEEEEEEcCC--Cc--eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCC-----CccC-----CCCc
Q 004475 479 LQKEMIKYQRKD--GV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-----NEFS-----GMTP 544 (751)
Q Consensus 479 ~~~e~i~~~~~~--~~--~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~-----~~~~-----~~~~ 544 (751)
....+|.|.+.+ |. .+.+.++.|.+.. .+.|+|.|.||.-... .++..+. .... .+..
T Consensus 73 ~~a~ri~Y~std~~G~p~~~~gtv~~P~~~~----~~~pvvs~~hgt~g~~----~~CaPS~~~~~~~~~~~~~~~~~e~ 144 (462)
T 3guu_A 73 AASFQLQYRTTNTQNEAVADVATVWIPAKPA----SPPKIFSYQVYEDATA----LDCAPSYSYLTGLDQPNKVTAVLDT 144 (462)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEEECSSCC----SSCEEEEEECCCCCCS----GGGCHHHHHBSCSCCTTGGGGSTHH
T ss_pred ceEEEEEEEEECCCCCEEEEEEEEEecCCCC----CCCcEEEEeCCcccCC----CCcCCccccccCCCccccchhhhhH
Confidence 466777777754 33 4889999998732 2379999999963111 1111000 0000 1111
Q ss_pred hHHHHH-HhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCC-CCcEEEEEeChHHHHHHHHHHhC
Q 004475 545 TSSLIF-LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD-PSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 545 ~~~~~~-~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id-~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
.....+ +++||+|++ .|+.|.|............+.|..+++..+. .++ ..+++++|||+||..+++++...
T Consensus 145 ~~~~~~~l~~G~~Vv~---~Dy~G~G~~y~~~~~~~~~vlD~vrAa~~~~---~~~~~~~v~l~G~S~GG~aal~aa~~~ 218 (462)
T 3guu_A 145 PIIIGWALQQGYYVVS---SDHEGFKAAFIAGYEEGMAILDGIRALKNYQ---NLPSDSKVALEGYSGGAHATVWATSLA 218 (462)
T ss_dssp HHHHHHHHHTTCEEEE---ECTTTTTTCTTCHHHHHHHHHHHHHHHHHHT---TCCTTCEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEE---ecCCCCCCcccCCcchhHHHHHHHHHHHHhc---cCCCCCCEEEEeeCccHHHHHHHHHhC
Confidence 234466 899999999 5556666543322222122333333333332 232 47999999999999999888754
Q ss_pred ----CC-ceeEEEEccCCCCCCCC-------cc---------C----cc----------c------------c-------
Q 004475 623 ----PH-LFCCGIARSGSYNKTLT-------PF---------G----FQ----------T------------E------- 648 (751)
Q Consensus 623 ----p~-~~~~~v~~~~~~d~~~~-------~~---------~----~~----------~------------~------- 648 (751)
|+ .++++++.++..|.... .+ + ++ . .
T Consensus 219 ~~yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~ 298 (462)
T 3guu_A 219 ESYAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQV 298 (462)
T ss_dssp HHHCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHH
T ss_pred hhhcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHH
Confidence 33 58888888877551100 00 0 00 0 0
Q ss_pred -------c-------ccchhhH---HHHHhcCccc-----ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 649 -------F-------RTLWEAT---NVYIEMSPIT-----HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 649 -------~-------~~~~~~~---~~~~~~~~~~-----~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
. ..+...+ +.+.+..... -..+.++|+||+||++|.+|| +.+++++++++++.|.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP--~~~s~~l~~~l~~~G~~ 376 (462)
T 3guu_A 299 VLTYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVP--YQPAATYVKEQCAKGAN 376 (462)
T ss_dssp HHHCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCE
T ss_pred HHhhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHcCCC
Confidence 0 0000000 1111111100 123567999999999999999 99999999999999999
Q ss_pred EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCCCCCC-CC
Q 004475 707 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDGK-CG 750 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~-~~ 750 (751)
+++++|++.+|..... .....+++||++++... ...+ |+
T Consensus 377 V~~~~y~~~~H~~~~~----~~~~d~l~WL~~r~~G~-~~~~~C~ 416 (462)
T 3guu_A 377 INFSPYPIAEHLTAEI----FGLVPSLWFIKQAFDGT-TPKVICG 416 (462)
T ss_dssp EEEEEESSCCHHHHHH----HTHHHHHHHHHHHHHTC-CCCCCTT
T ss_pred eEEEEECcCCccCchh----hhHHHHHHHHHHHhCCC-CCCCCCC
Confidence 9999999999986432 33678899999999766 5555 86
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=167.96 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=147.8
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
..+...+...+|..+.....- ..|+||++||.+. ....| ......|+++||.|++
T Consensus 236 ~~~~~~~~~~dg~~l~~~~~g----------~~p~vv~~HG~~~-----------~~~~~----~~~~~~l~~~G~~v~~ 290 (555)
T 3i28_A 236 DMSHGYVTVKPRVRLHFVELG----------SGPAVCLCHGFPE-----------SWYSW----RYQIPALAQAGYRVLA 290 (555)
T ss_dssp GSEEEEEEEETTEEEEEEEEC----------SSSEEEEECCTTC-----------CGGGG----TTHHHHHHHTTCEEEE
T ss_pred ccceeEEEeCCCcEEEEEEcC----------CCCEEEEEeCCCC-----------chhHH----HHHHHHHHhCCCEEEE
Confidence 344555555578878766552 1489999999752 11122 2456678889999999
Q ss_pred cCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 560 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+.+|+|.+.... ....+..+|+.++++.+ +.++++++||||||.+|+.++.++|++++++|++++.
T Consensus 291 ---~D~~G~G~S~~~~~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 291 ---MDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp ---ECCTTSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ---ecCCCCCCCCCCCCcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 5666777765432 22456667777777666 3458999999999999999999999999999998875
Q ss_pred CCCCCCccCccc---------------------------------------c------------------------cccc
Q 004475 636 YNKTLTPFGFQT---------------------------------------E------------------------FRTL 652 (751)
Q Consensus 636 ~d~~~~~~~~~~---------------------------------------~------------------------~~~~ 652 (751)
............ . ....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (555)
T 3i28_A 362 FIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRM 441 (555)
T ss_dssp CCCCCTTSCHHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTT
T ss_pred CCCCCcccchHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccc
Confidence 432111000000 0 0000
Q ss_pred h--hhHHHH----------------------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 004475 653 W--EATNVY----------------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708 (751)
Q Consensus 653 ~--~~~~~~----------------------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~ 708 (751)
. .....+ ........+.++++|+|+++|++|..+| ...++.+.+.+ ..++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~----~~~~ 515 (555)
T 3i28_A 442 VTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWI----PHLK 515 (555)
T ss_dssp CCHHHHHHHHHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTC----TTCE
T ss_pred cCHHHHHHHHHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcC--HHHHHHHHhhC----CCce
Confidence 0 000000 0001122345789999999999999998 78777666554 3468
Q ss_pred EEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCC
Q 004475 709 LVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 709 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
++++++++|... .+....+.+.+.+||++.....+
T Consensus 516 ~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 550 (555)
T 3i28_A 516 RGHIEDCGHWTQ-MDKPTEVNQILIKWLDSDARNPP 550 (555)
T ss_dssp EEEETTCCSCHH-HHSHHHHHHHHHHHHHHHTCC--
T ss_pred EEEeCCCCCCcc-hhCHHHHHHHHHHHHHhccCCCC
Confidence 999999999865 46678899999999999876543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-14 Score=155.89 Aligned_cols=311 Identities=9% Similarity=0.077 Sum_probs=183.6
Q ss_pred eeEEeecCCCCCCCCccc-ccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.|++|++.+ ++... +++ ....+...+|||||++||-.+ ....|.++++.+++...+.....+
T Consensus 40 ~v~l~~~~~----~~~~~~~~~--h~~~v~~~~~spdg~~lasg~----------~d~~v~lWd~~~~~~~~~~~~~~~- 102 (611)
T 1nr0_A 40 SVYTVPVGS----LTDTEIYTE--HSHQTTVAKTSPSGYYCASGD----------VHGNVRIWDTTQTTHILKTTIPVF- 102 (611)
T ss_dssp EEEEEETTC----SSCCEEECC--CSSCEEEEEECTTSSEEEEEE----------TTSEEEEEESSSTTCCEEEEEECS-
T ss_pred EEEEecCCC----cccCeEecC--CCCceEEEEECCCCcEEEEEe----------CCCCEEEeECCCCcceeeEeeccc-
Confidence 688999976 55443 332 223588899999999999863 336777888866543222111111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
...+..++|||||+.|+........ ...+++++.
T Consensus 103 -~~~v~~v~fs~dg~~l~~~~~~~~~---------------------------------------------~~~v~~wd~ 136 (611)
T 1nr0_A 103 -SGPVKDISWDSESKRIAAVGEGRER---------------------------------------------FGHVFLFDT 136 (611)
T ss_dssp -SSCEEEEEECTTSCEEEEEECCSSC---------------------------------------------SEEEEETTT
T ss_pred -CCceEEEEECCCCCEEEEEECCCCc---------------------------------------------eeEEEEeeC
Confidence 1147889999999999877542111 146788885
Q ss_pred CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
......+..+ ..+..++|+||++.++++... ...+.+||..+.+.... +......
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~------------D~~v~lwd~~~~~~~~~------------l~~H~~~ 192 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKST------------FGEHTKF 192 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEE------------ECCCSSC
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeC------------CCeEEEEECCCCeEeee------------eccccCc
Confidence 3334445555 778899999999864444332 23588999876543321 1112234
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-------eeceeEE-EEEecCCceEEEe
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~spdg~~l~~~ 315 (751)
+..++|+|||+. |+..+ ..+.|.++++.. +.....+. .....+. ++|+|||+.|+..
T Consensus 193 V~~v~fspdg~~-las~s------------~D~~i~lwd~~~--g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 193 VHSVRYNPDGSL-FASTG------------GDGTIVLYNGVD--GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp EEEEEECTTSSE-EEEEE------------TTSCEEEEETTT--CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCE-EEEEE------------CCCcEEEEECCC--CcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 668999999997 55543 235678887641 22222221 2445666 9999999998876
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCce
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 395 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (751)
+. ...|.+.++.++ .....+........ .......+++.|+..+.+ ..
T Consensus 258 s~----D~~v~lWd~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~l~s~s~d---------------------~~ 305 (611)
T 1nr0_A 258 SA----DKTIKIWNVATL-KVEKTIPVGTRIED------QQLGIIWTKQALVSISAN---------------------GF 305 (611)
T ss_dssp ET----TSEEEEEETTTT-EEEEEEECCSSGGG------CEEEEEECSSCEEEEETT---------------------CC
T ss_pred eC----CCeEEEEeCCCC-ceeeeecCCCCccc------eeEEEEEcCCEEEEEeCC---------------------Cc
Confidence 52 235666666664 11112211100000 001122267777666622 26
Q ss_pred eEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 396 LDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 396 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
+.+|+..+++.......... .+. .++|||||+.|+-.. . -..+.++|+.+++..+
T Consensus 306 i~~~~~~~~~~~~~~~gh~~----~v~-------~l~~spdg~~l~s~s-~---D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNK----AIT-------ALSSSADGKTLFSAD-A---EGHINSWDISTGISNR 360 (611)
T ss_dssp EEEEETTTTEEEEEECCCSS----CEE-------EEEECTTSSEEEEEE-T---TSCEEEEETTTCCEEE
T ss_pred EEEEeCCCCCcceEEcCCCC----CEE-------EEEEeCCCCEEEEEe-C---CCcEEEEECCCCceee
Confidence 78889887765443322111 122 258999999877543 2 2458899998876554
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=151.65 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=146.1
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+++.+. .+..+..+ +|+.+ + |+||++||.+.. .....|.... .....++++||+|+
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~------~-~~v~llHG~~~~---------~~~~~w~~~~-~~~~~l~~~~~~vv 65 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG------P-HAVYLLDGLRAQ---------DDYNGWDINT-PAFEEYYQSGLSVI 65 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS------S-SEEEECCCTTCC---------SSSCHHHHHS-CHHHHHTTSSSEEE
T ss_pred eEEEEEEECcccCceeEEE--EcCCC------C-CEEEEECCCCCC---------CCcccccccC-cHHHHHhcCCeEEE
Confidence 4566666654 34455555 44442 1 489999997410 0111111100 12234667899999
Q ss_pred EcCCCCCCCCCC--CC-------CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004475 559 AGPSIPIIGEGD--KL-------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 629 (751)
Q Consensus 559 ~~~~~~~~g~g~--~~-------~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 629 (751)
+++..+..++.. .. ....+...+.+++. .++.++..+++++++|+||||||++|+.++.++|++|+++
T Consensus 66 ~pd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 142 (280)
T 1dqz_A 66 MPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMP---AWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYA 142 (280)
T ss_dssp EECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHHH---HHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEE
T ss_pred EECCCCCccccCCCCCCccccccccccHHHHHHHHHH---HHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEE
Confidence 976543222221 10 01222222334444 4444433466779999999999999999999999999999
Q ss_pred EEccCCCCCCCCccC-cc-----cc----cccchh--hHHHHHhcCcccccCCC---CCCEEEEEcCCCC----------
Q 004475 630 IARSGSYNKTLTPFG-FQ-----TE----FRTLWE--ATNVYIEMSPITHANKI---KKPILIIHGEVDD---------- 684 (751)
Q Consensus 630 v~~~~~~d~~~~~~~-~~-----~~----~~~~~~--~~~~~~~~~~~~~~~~~---~~P~li~~G~~D~---------- 684 (751)
++++|.++....... .. .. ....|. ....+...+|..++.++ .+|+++.||+.|.
T Consensus 143 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~ 222 (280)
T 1dqz_A 143 ASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPA 222 (280)
T ss_dssp EEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHH
T ss_pred EEecCcccccCcchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccch
Confidence 999998764321000 00 00 000011 11245555666555444 5899999999997
Q ss_pred ----CCCCChHHHHHHHHHHHhCC-CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 685 ----KVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 685 ----~vp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.++ ...+++++++|+++| .++++.++++++|.+. .+...+...+.||.+.|+
T Consensus 223 ~~~e~~~--~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 223 KFLEGLT--LRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHHhC
Confidence 456 889999999999999 9999999998899853 355667778888887764
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=163.95 Aligned_cols=226 Identities=13% Similarity=0.011 Sum_probs=145.1
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE-
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA- 556 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~- 556 (751)
-..+.+++.+. .+..+.+++|+|+++. .+++|+|+++||++|... .........|+++|++
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~---~~~~PvlvllHG~~~~~~--------------~~~~~~~~~l~~~g~~~ 228 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWAQS--------------MPVWPVLTSLTHRQQLP 228 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHHHT--------------SCCHHHHHHHHHTTSSC
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC---CCCCCEEEEeCCHHHhhc--------------CcHHHHHHHHHHcCCCC
Confidence 35677887764 5568999999998753 235999999999653210 0112345677888874
Q ss_pred ---EEEcCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004475 557 ---VLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 630 (751)
Q Consensus 557 ---v~~~~~~~~~g~g~~~~-~~~~~~~~~~d~~~~v~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 630 (751)
|+++++.+..+...... ...+...+. .+++.++.++. ..|+++++|+|+||||++|+.++.++|+.|++++
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~---~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~ 305 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQ---QELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHH---HTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEE
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHH---HHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEE
Confidence 77765532111110111 112222222 35566676653 3578899999999999999999999999999999
Q ss_pred EccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 631 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
+++|.+...... .. . ..+ ..+.+... ......+|++++||+.|..+ ..++++++++|+++|.++++.
T Consensus 306 ~~sg~~~~~~~~--~~-~--~~~-~~~~~~~~----~~~~~~~~i~l~~G~~D~~~---~~~~~~l~~~L~~~G~~v~~~ 372 (403)
T 3c8d_A 306 SQSGSYWWPHRG--GQ-Q--EGV-LLEKLKAG----EVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFWR 372 (403)
T ss_dssp EESCCTTTTCTT--SS-S--CCH-HHHHHHTT----SSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSEEEE
T ss_pred EeccccccCCCC--CC-c--HHH-HHHHHHhc----cccCCCceEEEEeeCCCchh---HHHHHHHHHHHHhCCCCEEEE
Confidence 999986532110 00 0 001 01111111 12345689999999998654 688999999999999999999
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++++ +|.+. .+...+..++.||.+...
T Consensus 373 ~~~G-gH~~~---~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 373 QVDG-GHDAL---CWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp EESC-CSCHH---HHHHHHHHHHHHHHGGGT
T ss_pred EeCC-CCCHH---HHHHHHHHHHHHHhcccc
Confidence 9999 59853 244566777888876543
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=152.26 Aligned_cols=214 Identities=16% Similarity=0.113 Sum_probs=134.2
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..+|..+.....-+.+ .|+||++||.+.+. .....|. .....|++ +|.|++ ++.+|
T Consensus 13 ~~~g~~l~y~~~g~~g--------~p~vvllHG~~~~~-----------~~~~~~~-~~~~~L~~-~~~vi~---~D~~G 68 (285)
T 1c4x_A 13 PSGTLASHALVAGDPQ--------SPAVVLLHGAGPGA-----------HAASNWR-PIIPDLAE-NFFVVA---PDLIG 68 (285)
T ss_dssp CCTTSCEEEEEESCTT--------SCEEEEECCCSTTC-----------CHHHHHG-GGHHHHHT-TSEEEE---ECCTT
T ss_pred EECCEEEEEEecCCCC--------CCEEEEEeCCCCCC-----------cchhhHH-HHHHHHhh-CcEEEE---ecCCC
Confidence 3466677665543211 37799999963110 0111111 22344444 599999 66678
Q ss_pred CCCCCCCc---hhHHHH----HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004475 568 EGDKLPND---RFVEQL----VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 640 (751)
Q Consensus 568 ~g~~~~~~---~~~~~~----~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~ 640 (751)
+|.+.... ...... .+|+.+.++.+ +.+++.|+||||||.+|+.+|.++|++++++|+.++......
T Consensus 69 ~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~ 142 (285)
T 1c4x_A 69 FGQSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMN 142 (285)
T ss_dssp STTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCS
T ss_pred CCCCCCCCCcccchhhhhhhHHHHHHHHHHHh------CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCC
Confidence 87764432 234555 66666666554 236899999999999999999999999999999987542110
Q ss_pred C--c-----cCc---c-------------cccccc----------h---hhHHHHH---h-----c-------CcccccC
Q 004475 641 T--P-----FGF---Q-------------TEFRTL----------W---EATNVYI---E-----M-------SPITHAN 669 (751)
Q Consensus 641 ~--~-----~~~---~-------------~~~~~~----------~---~~~~~~~---~-----~-------~~~~~~~ 669 (751)
. . ... . ...... + ..+..+. . . .....+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (285)
T 1c4x_A 143 ARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLG 222 (285)
T ss_dssp SCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHT
T ss_pred ccchhHHHHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhc
Confidence 0 0 000 0 000000 0 0000000 0 0 0123457
Q ss_pred CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 670 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 670 ~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++++|+|+++|++|..+| +..++.+.+.+. ..+++++++++|... .+....+.+.+.+||.+
T Consensus 223 ~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 223 RLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEEeCCCeeeC--HHHHHHHHHhCC----CceEEEeCCCCcchh-hcCHHHHHHHHHHHHhc
Confidence 889999999999999998 888777766553 568999999999875 45677888999999863
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=156.86 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=127.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-h----hHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-R----FVEQLVSSAE 586 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~----~~~~~~~d~~ 586 (751)
.|+||++||.+. ....+ ......++++||.|++ ++.+|+|.+.... . ...+..+|+.
T Consensus 24 ~~~vv~lHG~~~-----------~~~~~----~~~~~~l~~~g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 85 (279)
T 4g9e_A 24 GAPLLMIHGNSS-----------SGAIF----APQLEGEIGKKWRVIA---PDLPGHGKSTDAIDPDRSYSMEGYADAMT 85 (279)
T ss_dssp EEEEEEECCTTC-----------CGGGG----HHHHHSHHHHHEEEEE---ECCTTSTTSCCCSCHHHHSSHHHHHHHHH
T ss_pred CCeEEEECCCCC-----------chhHH----HHHHhHHHhcCCeEEe---ecCCCCCCCCCCCCcccCCCHHHHHHHHH
Confidence 589999999741 11111 2334455778999999 6667888775432 1 2344555555
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCcccc--cc-------
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQTE--FR------- 650 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-------~~~~~~--~~------- 650 (751)
++++.+ +..+++++|||+||.+|+.++.++|+ +.++|++++........ ...... ..
T Consensus 86 ~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
T 4g9e_A 86 EVMQQL------GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVE 158 (279)
T ss_dssp HHHHHH------TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHH
T ss_pred HHHHHh------CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHH
Confidence 555554 23589999999999999999999998 66666666543211000 000000 00
Q ss_pred --------cch--hhHHHH---------------H---hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH-HHHH
Q 004475 651 --------TLW--EATNVY---------------I---EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF-DALK 701 (751)
Q Consensus 651 --------~~~--~~~~~~---------------~---~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~-~~l~ 701 (751)
... ...+.+ . .......+.++++|+|+++|++|..+| ...+..+. +.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~- 235 (279)
T 4g9e_A 159 SYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVE--LDFVSKVKFGNL- 235 (279)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCSSBC--HHHHTTCCCSSB-
T ss_pred HHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCcccc--hHHHHHHhhccC-
Confidence 000 000000 0 011122345678999999999999998 77665554 222
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCCCC
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSD 746 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 746 (751)
..++++++++++|... .+....+.+.+.+||.+.......+
T Consensus 236 ---~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~~~~~~~~~~ 276 (279)
T 4g9e_A 236 ---WEGKTHVIDNAGHAPF-REAPAEFDAYLARFIRDCTQLEHHH 276 (279)
T ss_dssp ---GGGSCEEETTCCSCHH-HHSHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ---CCCeEEEECCCCcchH-HhCHHHHHHHHHHHHHHhhhhhhhh
Confidence 2457899999999865 5677889999999999987654443
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=152.65 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=127.4
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVE 590 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~ 590 (751)
|.||++||.+. +...| ......|+++||.|++ ++.+|+|.+... ........+|+.++++
T Consensus 24 ~pvvllHG~~~-----------~~~~~----~~~~~~L~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l~ 85 (279)
T 1hkh_A 24 QPVVLIHGYPL-----------DGHSW----ERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVLE 85 (279)
T ss_dssp EEEEEECCTTC-----------CGGGG----HHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCc-----------hhhHH----hhhHHHHHhCCcEEEE---eCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45999999641 11111 2345677889999999 666788777543 2245667788888887
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCC----ccCccccc-----------c-c--
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLT----PFGFQTEF-----------R-T-- 651 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~d~~~~----~~~~~~~~-----------~-~-- 651 (751)
.+ +.+++.++||||||.+|+.+|.++|+ +++++|+.++....... ........ . .
T Consensus 86 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (279)
T 1hkh_A 86 TL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWF 159 (279)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHH
T ss_pred hc------CCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhH
Confidence 76 23589999999999999999999998 99999999874321100 00000000 0 0
Q ss_pred ------chh---------hH---HHHH------------------hcCcccccCCC---CCCEEEEEcCCCCCCCCChHH
Q 004475 652 ------LWE---------AT---NVYI------------------EMSPITHANKI---KKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 652 ------~~~---------~~---~~~~------------------~~~~~~~~~~~---~~P~li~~G~~D~~vp~~~~~ 692 (751)
.+. .. +.+. .......+.++ ++|+|+++|++|..+| +..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~--~~~ 237 (279)
T 1hkh_A 160 TDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--IDA 237 (279)
T ss_dssp HHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TTT
T ss_pred HHHHhhhhhcccCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCC--hHH
Confidence 000 00 0000 00111234456 8999999999999998 666
Q ss_pred H-HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 693 A-ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 693 ~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+ +.+.+.+. .++++++++++|... .+..+.+.+.+.+||.
T Consensus 238 ~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 238 TARRFHQAVP----EADYVEVEGAPHGLL-WTHADEVNAALKTFLA 278 (279)
T ss_dssp THHHHHHHCT----TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CeeEEEeCCCCccch-hcCHHHHHHHHHHHhh
Confidence 5 56655543 468999999999875 4567788889999985
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=150.74 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=127.5
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
|.||++||.++++. ....|. ... ..|++ .|.|++ ++.+|+|.+.... ....+..+|+.+.
T Consensus 34 ~~vvllHG~~~~~~-----------~~~~w~-~~~~~~L~~-~~~vi~---~D~~G~G~S~~~~~~~~~~~~~a~dl~~~ 97 (286)
T 2puj_A 34 ETVIMLHGGGPGAG-----------GWSNYY-RNVGPFVDA-GYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 97 (286)
T ss_dssp SEEEEECCCSTTCC-----------HHHHHT-TTHHHHHHT-TCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCCC-----------cHHHHH-HHHHHHHhc-cCEEEE---ECCCCCCCCCCCCCcCcCHHHHHHHHHHH
Confidence 68999999632110 011111 223 44554 499999 6677888775432 2345556666666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--C--cc-Cc---------cc-------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--T--PF-GF---------QT------- 647 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~--~~-~~---------~~------- 647 (751)
++.+ +.+++.|+||||||.+|+.+|.++|++++++|+.++...... . .. .. ..
T Consensus 98 l~~l------~~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T 2puj_A 98 MDAL------DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQM 171 (286)
T ss_dssp HHHT------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHh------CCCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHH
Confidence 5544 246899999999999999999999999999999987542110 0 00 00 00
Q ss_pred ------ccc--------cchh----hHH---HHH---------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 648 ------EFR--------TLWE----ATN---VYI---------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 648 ------~~~--------~~~~----~~~---~~~---------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
... ..+. .+. .+. .......+.++++|+|+++|++|..+| +..++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p--~~~~~~~~ 249 (286)
T 2puj_A 172 LQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLL 249 (286)
T ss_dssp HHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred HHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccC--HHHHHHHH
Confidence 000 0000 000 000 011223567789999999999999998 88887776
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+.++ ..+++++++++|... .+....+.+.+.+||.+
T Consensus 250 ~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 250 WNID----DARLHVFSKCGAWAQ-WEHADEFNRLVIDFLRH 285 (286)
T ss_dssp HHSS----SEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred HHCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHHHHhc
Confidence 6553 468999999999875 55677888999999964
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=155.90 Aligned_cols=216 Identities=16% Similarity=0.145 Sum_probs=137.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIG 567 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g 567 (751)
.+|.++.+..+-|++. ..+.+.||++||++. ....| . .....|+. .||.|++ +|.+|
T Consensus 35 ~~g~~l~y~~~G~~~~----~~~g~plvllHG~~~-----------~~~~w---~-~~~~~l~~~~~~~Via---~D~rG 92 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA----QPHALPLIVLHGGPG-----------MAHNY---V-ANIAALADETGRTVIH---YDQVG 92 (330)
T ss_dssp ETTEEEEEEEECCSSC----CTTCCCEEEECCTTT-----------CCSGG---G-GGGGGHHHHHTCCEEE---ECCTT
T ss_pred ecCcEEEEEEecCccC----CCCCCcEEEECCCCC-----------CchhH---H-HHHHHhccccCcEEEE---ECCCC
Confidence 4677888888876421 101235888999641 11111 1 12334554 6999999 67778
Q ss_pred CCCCCC--Cc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-
Q 004475 568 EGDKLP--ND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL- 640 (751)
Q Consensus 568 ~g~~~~--~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~- 640 (751)
+|.+.. .. .......+|+.++++.+ +.+++.|+||||||.+|+.+|.++|+++.++|+.++......
T Consensus 93 ~G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~ 166 (330)
T 3nwo_A 93 CGNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLW 166 (330)
T ss_dssp STTSCCCTTSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHH
T ss_pred CCCCCCCCCCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHH
Confidence 887743 11 12456677777777766 235899999999999999999999999999998876432100
Q ss_pred ----------Ccc------------C-ccc-c--------------cccchhh------------HHHHH----------
Q 004475 641 ----------TPF------------G-FQT-E--------------FRTLWEA------------TNVYI---------- 660 (751)
Q Consensus 641 ----------~~~------------~-~~~-~--------------~~~~~~~------------~~~~~---------- 660 (751)
.+. . ... . ....+.. +..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 3nwo_A 167 SEAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHV 246 (330)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhh
Confidence 000 0 000 0 0000000 00000
Q ss_pred -----hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHH
Q 004475 661 -----EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRW 735 (751)
Q Consensus 661 -----~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 735 (751)
.......+.++++|+|+++|++|.++| ..+..+.+.+ ...+++++|++||... .+..+.+.+.+.+|
T Consensus 247 ~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~p---~~~~~~~~~i----p~~~~~~i~~~gH~~~-~e~p~~~~~~i~~F 318 (330)
T 3nwo_A 247 VGTLGDWSVIDRLPDVTAPVLVIAGEHDEATP---KTWQPFVDHI----PDVRSHVFPGTSHCTH-LEKPEEFRAVVAQF 318 (330)
T ss_dssp CSGGGGCBCGGGGGGCCSCEEEEEETTCSSCH---HHHHHHHHHC----SSEEEEEETTCCTTHH-HHSHHHHHHHHHHH
T ss_pred hccccCCchhhhcccCCCCeEEEeeCCCccCh---HHHHHHHHhC----CCCcEEEeCCCCCchh-hcCHHHHHHHHHHH
Confidence 011223456789999999999999875 4555555443 3579999999999876 56778899999999
Q ss_pred HHHHh
Q 004475 736 LQKYC 740 (751)
Q Consensus 736 l~~~l 740 (751)
|.++-
T Consensus 319 L~~~~ 323 (330)
T 3nwo_A 319 LHQHD 323 (330)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-14 Score=153.05 Aligned_cols=327 Identities=9% Similarity=-0.003 Sum_probs=188.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEc--CCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~--~~g~~~~lt~~~~~ 83 (751)
.|.++|+.+ |+..... +.+......+|||||++|+..+ . ...|.++|+ ++++...-.....
T Consensus 160 ~V~v~D~~t----~~~~~~i--~~g~~~~~v~~spdg~~l~v~~---------~-d~~V~v~D~~~~t~~~~~~i~~g~- 222 (543)
T 1nir_A 160 QIALVDGDS----KKIVKVI--DTGYAVHISRMSASGRYLLVIG---------R-DARIDMIDLWAKEPTKVAEIKIGI- 222 (543)
T ss_dssp EEEEEETTT----CCEEEEE--ECSTTEEEEEECTTSCEEEEEE---------T-TSEEEEEETTSSSCEEEEEEECCS-
T ss_pred eEEEEECCC----ceEEEEE--ecCcccceEEECCCCCEEEEEC---------C-CCeEEEEECcCCCCcEEEEEecCC-
Confidence 588999988 8776543 2233366788999999987754 2 278999999 6665432222221
Q ss_pred cccceeeeeEEec----CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 84 CLNAVFGSFVWVN----NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 84 ~~~~~~~~~~wsp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
....++||| ||++|+..... ...|
T Consensus 223 ----~p~~va~sp~~~~dg~~l~v~~~~------------------------------------------------~~~v 250 (543)
T 1nir_A 223 ----EARSVESSKFKGYEDRYTIAGAYW------------------------------------------------PPQF 250 (543)
T ss_dssp ----EEEEEEECCSTTCTTTEEEEEEEE------------------------------------------------SSEE
T ss_pred ----CcceEEeCCCcCCCCCEEEEEEcc------------------------------------------------CCeE
Confidence 357889999 99999887431 1466
Q ss_pred EEEcC-CCCce-ecCC-----------C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeec
Q 004475 160 VLGSL-DGTAK-DFGT-----------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (751)
Q Consensus 160 ~~~~~-~G~~~-~lt~-----------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (751)
.++|. +++.. .+.. + ..+..+.+|||+++++++... ...|++||..+.+...+.
T Consensus 251 ~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 251 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEEE
T ss_pred EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCcceeE
Confidence 77777 55432 2211 1 245688999999988876533 457899998764322211
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeece-eE-E
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDL-RF-S 302 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~-~~-~ 302 (751)
..+. ...++.+.|+|||++ ++.+.. ..+.|.++|++ .+.. ..+..... .. .
T Consensus 319 ~i~~-----------~~~~~~~~~spdg~~-l~va~~-----------~~~~v~v~D~~---tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 319 SIGA-----------APFLHDGGWDSSHRY-FMTAAN-----------NSNKVAVIDSK---DRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEEC-----------CSSCCCEEECTTSCE-EEEEEG-----------GGTEEEEEETT---TTEEEEEEECSSSBCCTT
T ss_pred Eecc-----------CcCccCceECCCCCE-EEEEec-----------CCCeEEEEECC---CCeEEEeeccCCCCCCCC
Confidence 1110 123557899999998 544431 23578888875 3322 22221111 11 1
Q ss_pred -EE-EecCCceEEEeeeecccceeEEEecCCCCC-----CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 303 -VS-WCDDSLALVNETWYKTSQTRTWLVCPGSKD-----VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 303 -~~-~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
.. ++|++..++.+.... ...|-+++.++.. .+..+......... ..++++|||++|+.....
T Consensus 373 g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~------~~v~~~pdg~~l~v~~~~--- 441 (543)
T 1nir_A 373 GANFVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGS------LFIKTHPKSSHLYVDTTF--- 441 (543)
T ss_dssp CEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCC------CCEECCTTCCEEEECCTT---
T ss_pred CcccCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCc------eEEEcCCCCCcEEEecCC---
Confidence 23 378877665544222 2345556655420 11112222211111 128899999999876510
Q ss_pred cceEEEEccCCCCCC-CCCceeEEEecCCCcee-EEeeccc-hhhhhceeeeecCCcceeeccCCCEEEEEEecC-CCCC
Q 004475 376 EQIYILLNGRGFTPE-GNIPFLDLFDINTGSKE-RIWESNR-EKYFETAVALVFGQGEEDINLNQLKILTSKESK-TEIT 451 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~-~~~~~l~~~d~~~g~~~-~l~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~~ 451 (751)
+++ .....|.+||+++++.. ++..... ...-+.... ...+.|+|||++|+++.++. ....
T Consensus 442 ------------~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 442 ------------NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR----VVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp ------------CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE----EEEEEECSSSSEEEEEEECCTTSCC
T ss_pred ------------CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc----eEeccCCCCCCEEEEEeecCCCCCC
Confidence 000 01337999999988764 4432110 000000001 11258999999999987654 3467
Q ss_pred eEEEEEcCCCceeEe
Q 004475 452 QYHILSWPLKKSSQI 466 (751)
Q Consensus 452 ~l~~~~~~~g~~~~l 466 (751)
.|.++|..+++....
T Consensus 506 ~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 506 ALVVVDDKTLKLKAV 520 (543)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEECCCceEEEe
Confidence 899999999886643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-14 Score=144.92 Aligned_cols=246 Identities=10% Similarity=0.014 Sum_probs=160.7
Q ss_pred ceeEEeecCCCCCCCCcc----cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 5 TGIGIHRLLPDDSLGPEK----EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~----~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
..|.+|++.+ ++.. .+........+...+|+|||++|+... ....|.++++.+++...+...
T Consensus 72 g~i~iw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 72 GCVKVWDISH----PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----------EASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp SEEEEEETTS----TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----------SSSEEEEEECCCC--EEEEEE
T ss_pred CeEEEEECCC----CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc----------CCCcEEEEECCCCCcceeeec
Confidence 4689999987 4322 221112334688999999999998863 336788889888763332211
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
..+ ...+..++|+|||+.|+....+ ..|.
T Consensus 138 ~~~--~~~i~~~~~~~~~~~l~~~~~d-------------------------------------------------g~v~ 166 (337)
T 1gxr_A 138 TSS--APACYALAISPDSKVCFSCCSD-------------------------------------------------GNIA 166 (337)
T ss_dssp ECS--SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEE
T ss_pred ccC--CCceEEEEECCCCCEEEEEeCC-------------------------------------------------CcEE
Confidence 111 1136788999999998877432 4677
Q ss_pred EEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCcc
Q 004475 161 LGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 161 ~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (751)
++++ +++ ...+..+ ..+..++|+|||++|+....+ ..+++||+.+++........
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~--------- 224 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT--------- 224 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS---------
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC-------------CcEEEEECCCCceEeeecCC---------
Confidence 8888 553 3445444 778899999999998876533 36889999877654332221
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
..+..+.|+|||+. ++... ..+.|+++++. ......+......+. +.|+|||+.|+...
T Consensus 225 ----~~v~~~~~s~~~~~-l~~~~------------~~~~i~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 225 ----SQIFSLGYCPTGEW-LAVGM------------ESSNVEVLHVN---KPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp ----SCEEEEEECTTSSE-EEEEE------------TTSCEEEEETT---SSCEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ----CceEEEEECCCCCE-EEEEc------------CCCcEEEEECC---CCCeEEEcCCccceeEEEECCCCCEEEEec
Confidence 23558899999998 55543 23578888885 344445555566677 99999999887765
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. ...|.+.++.++ ........ ...+.. ++|+|||+.|+...
T Consensus 285 ~----dg~i~~~~~~~~--~~~~~~~~-~~~v~~------~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 285 K----DNLLNAWRTPYG--ASIFQSKE-SSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp T----TSEEEEEETTTC--CEEEEEEC-SSCEEE------EEECTTSCEEEEEE
T ss_pred C----CCcEEEEECCCC--eEEEEecC-CCcEEE------EEECCCCCEEEEec
Confidence 2 246777777764 22222211 112222 78999999988877
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-14 Score=149.22 Aligned_cols=254 Identities=10% Similarity=0.123 Sum_probs=149.4
Q ss_pred ccccceeecCCCC-eEEEEEeecccccccCCceeEEEEEc----CCCC-------eeeccCCCCcc-----ccceeeeeE
Q 004475 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA----ETGE-------AKPLFESPDIC-----LNAVFGSFV 93 (751)
Q Consensus 31 ~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~~~~~l~i~~~----~~g~-------~~~lt~~~~~~-----~~~~~~~~~ 93 (751)
..+...+|||||+ +||... ..+.|.++++ .+++ ...+....... ....+..++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGE----------KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEE----------TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred CceEEEEECCCCCcEEEEec----------CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 3688999999999 888753 3356777777 6666 22222210000 011477899
Q ss_pred EecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecC
Q 004475 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG 172 (751)
Q Consensus 94 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt 172 (751)
|+|||++|+....+ ..|.+++.+| ....+.
T Consensus 116 ~s~~~~~l~~~~~d-------------------------------------------------g~i~i~~~~~~~~~~~~ 146 (425)
T 1r5m_A 116 WSHDGNSIVTGVEN-------------------------------------------------GELRLWNKTGALLNVLN 146 (425)
T ss_dssp ECTTSSEEEEEETT-------------------------------------------------SCEEEEETTSCEEEEEC
T ss_pred EcCCCCEEEEEeCC-------------------------------------------------CeEEEEeCCCCeeeecc
Confidence 99999999987442 3566667766 445555
Q ss_pred CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC--------------------
Q 004475 173 TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-------------------- 231 (751)
Q Consensus 173 ~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~-------------------- 231 (751)
.+ ..+..++|+|||++|+....+. .+.+|++.+++...........
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVEN-------------VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTC-------------CEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred CCCccEEEEEECCCCCEEEEEecCC-------------eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence 45 7788999999999998765432 3555555443322111110000
Q ss_pred -----------------------CC-CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC
Q 004475 232 -----------------------DI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (751)
Q Consensus 232 -----------------------~~-~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (751)
.. ...+......+..++|+|+|+. |+... ..+.|+++++..
T Consensus 214 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~------------~d~~i~i~d~~~-- 278 (425)
T 1r5m_A 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLSAS------------DDGTLRIWHGGN-- 278 (425)
T ss_dssp EEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE-EEEEE------------TTSCEEEECSSS--
T ss_pred EcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE-EEEEc------------CCCEEEEEECCC--
Confidence 00 0011122334668899999987 55543 235788888751
Q ss_pred CCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 288 GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 288 ~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
+.....+......+. +.|+|++ .|+... ....|.++++.++ ............+.. ++|+|||+.|
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----~d~~i~i~d~~~~--~~~~~~~~~~~~i~~------~~~s~~~~~l 345 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCS----MDGSVRLWSLKQN--TLLALSIVDGVPIFA------GRISQDGQKY 345 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEE----TTSEEEEEETTTT--EEEEEEECTTCCEEE------EEECTTSSEE
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEe----CCCcEEEEECCCC--cEeEecccCCccEEE------EEEcCCCCEE
Confidence 233444544566677 9999999 555544 2346777888764 222222222222222 7899999998
Q ss_pred EEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 367 IAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
+....+ ..|.+||+.+++
T Consensus 346 ~~~~~d---------------------g~i~i~~~~~~~ 363 (425)
T 1r5m_A 346 AVAFMD---------------------GQVNVYDLKKLN 363 (425)
T ss_dssp EEEETT---------------------SCEEEEECHHHH
T ss_pred EEEECC---------------------CeEEEEECCCCc
Confidence 887722 267888887655
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=153.90 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=135.2
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.++..+....+.+ .|+||++||.+.. ...+ ..+...|+ +||.|++ ++.+|+
T Consensus 55 ~~~~~~~~~~~g~----------~p~vv~lhG~~~~-----------~~~~----~~~~~~L~-~~~~v~~---~D~~G~ 105 (314)
T 3kxp_A 55 IGRITLNVREKGS----------GPLMLFFHGITSN-----------SAVF----EPLMIRLS-DRFTTIA---VDQRGH 105 (314)
T ss_dssp CSSCEEEEEEECC----------SSEEEEECCTTCC-----------GGGG----HHHHHTTT-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEecCC----------CCEEEEECCCCCC-----------HHHH----HHHHHHHH-cCCeEEE---EeCCCc
Confidence 3566676665522 4789999996411 1111 12333444 4799999 555677
Q ss_pred CCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc----
Q 004475 569 GDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---- 642 (751)
Q Consensus 569 g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---- 642 (751)
|.+.. ......+..+|+..+++++. ..+++++|||+||.+|+.++.++|++++++|++++........
T Consensus 106 G~S~~~~~~~~~~~~~~dl~~~l~~l~------~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (314)
T 3kxp_A 106 GLSDKPETGYEANDYADDIAGLIRTLA------RGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179 (314)
T ss_dssp TTSCCCSSCCSHHHHHHHHHHHHHHHT------SSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhC------CCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHH
Confidence 76642 22345666777777777662 2689999999999999999999999999999998764311100
Q ss_pred --------cCcccc--c---------ccchhhHHHHH---------------------------hcCcccccCCCCCCEE
Q 004475 643 --------FGFQTE--F---------RTLWEATNVYI---------------------------EMSPITHANKIKKPIL 676 (751)
Q Consensus 643 --------~~~~~~--~---------~~~~~~~~~~~---------------------------~~~~~~~~~~~~~P~l 676 (751)
..+... . .........+. ..+....+.++++|+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 259 (314)
T 3kxp_A 180 EARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVL 259 (314)
T ss_dssp HHHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEE
T ss_pred HHHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEE
Confidence 000000 0 00000000000 0023334567899999
Q ss_pred EEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 677 IIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 677 i~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+++|++|..+| ...+.++.+.+. .++++++++++|.+. .+....+.+.+.+||+
T Consensus 260 ii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~g~gH~~~-~e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 260 IVRGESSKLVS--AAALAKTSRLRP----DLPVVVVPGADHYVN-EVSPEITLKAITNFID 313 (314)
T ss_dssp EEEETTCSSSC--HHHHHHHHHHCT----TSCEEEETTCCSCHH-HHCHHHHHHHHHHHHH
T ss_pred EEecCCCccCC--HHHHHHHHHhCC----CceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 99999999998 888888887663 357999999999875 5557788899999986
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=159.47 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=61.6
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+.++++|+|+++|++|.++| +..++.+.+.+.+.+..++++++++ ++|... .+....+.+.+.+||.+++.
T Consensus 302 ~l~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 302 ALSNVEANVLMIPCKQDLLQP--SRYNYKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKVS 374 (377)
T ss_dssp HHHTCCSEEEEECBTTCSSSC--THHHHHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCCS
T ss_pred HHhhCCCCEEEEecCCccccC--HHHHHHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhhh
Confidence 456789999999999999998 8999999999988777889999998 999865 44567788999999987653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-14 Score=144.24 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=166.5
Q ss_pred cccceeecCC----CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 32 KINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPD----G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+...+|+|+ ++.|+..+. ++...|| +..+++.........+ ...+..+.|+|+++.|+..+.+
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~--------D~~v~vW--~~~~~~~~~~~~l~gh--~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSL--------DDLVKVW--KWRDERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp CEEEEEEC-------CEEEEEET--------TSCEEEE--EEETTEEEEEEEECCC--SSCEEEEEECSSSSEEEEEETT
T ss_pred cEEEEEEecCCCCCCCEEEEEcC--------CCCEEEE--ECCCCCeeeeeeeccC--CCCEEEEEECCCCCEEEEEeCC
Confidence 6889999986 456666432 3444555 5444443221111111 1146788999999988876442
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~Sp 184 (751)
..|.++|+ +| ..+.+..+ ..+..++|+|
T Consensus 102 -------------------------------------------------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 102 -------------------------------------------------AHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp -------------------------------------------------SEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred -------------------------------------------------CcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 47888888 66 34445444 5667899999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
||++|+....+ ..+.+|++.+++...... .....+..++|+|||+. |+..+
T Consensus 133 dg~~l~~g~~d-------------g~v~i~~~~~~~~~~~~~------------~~~~~v~~~~~spdg~~-lasg~--- 183 (321)
T 3ow8_A 133 DSQYLATGTHV-------------GKVNIFGVESGKKEYSLD------------TRGKFILSIAYSPDGKY-LASGA--- 183 (321)
T ss_dssp TSSEEEEECTT-------------SEEEEEETTTCSEEEEEE------------CSSSCEEEEEECTTSSE-EEEEE---
T ss_pred CCCEEEEEcCC-------------CcEEEEEcCCCceeEEec------------CCCceEEEEEECCCCCE-EEEEc---
Confidence 99999876432 468899998664432111 11123558899999998 55543
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
..+.|.++++.. +.....+......+. +.|+|||+.|+.+.. ...|.+.++.++ ........
T Consensus 184 ---------~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~--~~~~~~~~ 246 (321)
T 3ow8_A 184 ---------IDGIINIFDIAT--GKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHA--NLAGTLSG 246 (321)
T ss_dssp ---------TTSCEEEEETTT--TEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTC--CEEEEECC
T ss_pred ---------CCCeEEEEECCC--CcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCc--ceeEEEcC
Confidence 235788888751 222233334445566 899999998887652 235666676663 22222222
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
....+.. ++|+|||+.|+..+.+ ..|.+||+.+++....+..... .+.
T Consensus 247 h~~~v~~------~~~sp~~~~l~s~s~D---------------------~~v~iwd~~~~~~~~~~~~h~~----~v~- 294 (321)
T 3ow8_A 247 HASWVLN------VAFCPDDTHFVSSSSD---------------------KSVKVWDVGTRTCVHTFFDHQD----QVW- 294 (321)
T ss_dssp CSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTTTEEEEEECCCSS----CEE-
T ss_pred CCCceEE------EEECCCCCEEEEEeCC---------------------CcEEEEeCCCCEEEEEEcCCCC----cEE-
Confidence 2222222 7899999998887732 2789999988876544332111 122
Q ss_pred eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 424 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
.++|+|||+.|+... .. +.|.++|.
T Consensus 295 ------~v~~s~~g~~l~s~~-~d---~~i~vwd~ 319 (321)
T 3ow8_A 295 ------GVKYNGNGSKIVSVG-DD---QEIHIYDC 319 (321)
T ss_dssp ------EEEECTTSSEEEEEE-TT---CCEEEEEC
T ss_pred ------EEEECCCCCEEEEEe-CC---CeEEEEeC
Confidence 258999999876543 21 33555553
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=144.71 Aligned_cols=182 Identities=13% Similarity=-0.014 Sum_probs=114.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|+||++||.+... . ..+.......|+++||.|++++++ ..+ .. ...+..+++.+.++.
T Consensus 4 ~p~vv~~HG~~~~~-----------~--~~~~~~~~~~l~~~g~~v~~~d~~---~~~---~~--~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASS-----------T--NHWFPWLKKRLLADGVQADILNMP---NPL---QP--RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCT-----------T--STTHHHHHHHHHHTTCEEEEECCS---CTT---SC--CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCc-----------c--hhHHHHHHHHHHhCCcEEEEecCC---CCC---CC--CHHHHHHHHHHHHHh
Confidence 48899999964211 1 012222223577899999996664 111 11 233444444444332
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCCCCCCCCccCcccccccchhhHHHHHh-cCccccc
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIE-MSPITHA 668 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 668 (751)
+ ..+++++||||||.+|+.++.++|+ +++++|+.+|....... +.. ...+.. ......+
T Consensus 63 ~-------~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~ 124 (192)
T 1uxo_A 63 L-------HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPT---LQM--------LDEFTQGSFDHQKI 124 (192)
T ss_dssp C-------CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTT---CGG--------GGGGTCSCCCHHHH
T ss_pred c-------cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCcccc---chh--------hhhhhhcCCCHHHH
Confidence 2 3689999999999999999999999 99999999987542110 000 000000 0011223
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.++++|+|+++|++|..+| ...++.+.+.+ ..+++++++++|.+.... . ..+..+.+||.+.+.
T Consensus 125 ~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~-~-~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 125 IESAKHRAVIASKDDQIVP--FSFSKDLAQQI-----DAALYEVQHGGHFLEDEG-F-TSLPIVYDVLTSYFS 188 (192)
T ss_dssp HHHEEEEEEEEETTCSSSC--HHHHHHHHHHT-----TCEEEEETTCTTSCGGGT-C-SCCHHHHHHHHHHHH
T ss_pred HhhcCCEEEEecCCCCcCC--HHHHHHHHHhc-----CceEEEeCCCcCcccccc-c-ccHHHHHHHHHHHHH
Confidence 4567899999999999998 88888887776 347999999999875322 1 112235666666554
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=158.51 Aligned_cols=177 Identities=13% Similarity=0.104 Sum_probs=115.1
Q ss_pred HHhCCeEEEEcCCCCCCC-CCCCCCC----------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChH
Q 004475 550 FLARRFAVLAGPSIPIIG-EGDKLPN----------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYG 611 (751)
Q Consensus 550 ~~~~G~~v~~~~~~~~~g-~g~~~~~----------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~G 611 (751)
|+++||.|+++|. +| +|.+... .....+..+|+.++++.+ +..++. |+|||||
T Consensus 94 L~~~g~~vi~~D~---~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~~lvGhS~G 164 (377)
T 2b61_A 94 LDTDRYFFISSNV---LGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL------GISHLKAIIGGSFG 164 (377)
T ss_dssp EETTTCEEEEECC---TTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT------TCCCEEEEEEETHH
T ss_pred cccCCceEEEecC---CCCCCCCCCCcccCccccccccccCCcccHHHHHHHHHHHHHHc------CCcceeEEEEEChh
Confidence 4578999999554 45 3333221 123455566665555443 346887 9999999
Q ss_pred HHHHHHHHHhCCCceeEEEEccCCCCCCCCc----------------cC---cc---------------------c-c--
Q 004475 612 AFMTAHLLAHAPHLFCCGIARSGSYNKTLTP----------------FG---FQ---------------------T-E-- 648 (751)
Q Consensus 612 G~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~----------------~~---~~---------------------~-~-- 648 (751)
|.+|+.+|.++|++++++|++++........ +. +. . .
T Consensus 165 g~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
T 2b61_A 165 GMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQL 244 (377)
T ss_dssp HHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHCchhhheeEEeccCccccccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHH
Confidence 9999999999999999999999864321000 00 00 0 0
Q ss_pred -------ccc--ch----hhHHH------------------------HHhcC-------cccccCCCCCCEEEEEcCCCC
Q 004475 649 -------FRT--LW----EATNV------------------------YIEMS-------PITHANKIKKPILIIHGEVDD 684 (751)
Q Consensus 649 -------~~~--~~----~~~~~------------------------~~~~~-------~~~~~~~~~~P~li~~G~~D~ 684 (751)
... ++ ...+. +.... ....+.++++|+|+++|++|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~ 324 (377)
T 2b61_A 245 AKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQ 324 (377)
T ss_dssp HHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCS
T ss_pred HHHhccccccccccccchHHHHHHHHhhhhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcc
Confidence 000 00 00000 00111 124467889999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCccccHHHHHHHHHHHHHH
Q 004475 685 KVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 685 ~vp~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++| +..+.+..+.+.+....+++++++ +++|... .+....+.+.+.+||.+
T Consensus 325 ~~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 325 LFK--PIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKRIRDGLAG 376 (377)
T ss_dssp SSC--HHHHHHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHHHHHHHHT
T ss_pred cCC--ccchHHHHHHHHhcCCCceEEEeCCCCCchhh-hcCHHHHHHHHHHHHhc
Confidence 998 865556666666665678999999 9999876 45567888999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-14 Score=146.15 Aligned_cols=255 Identities=10% Similarity=-0.016 Sum_probs=160.4
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-cc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-IC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~-~~ 84 (751)
.|+++|+.+ ++...... .+......+|||||++++++. .....|+++++++++......... ..
T Consensus 70 ~v~~~d~~~----~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~~~~ 134 (353)
T 3vgz_A 70 VVYRLDPVT----LEVTQAIH--NDLKPFGATINNTTQTLWFGN---------TVNSAVTAIDAKTGEVKGRLVLDDRKR 134 (353)
T ss_dssp EEEEECTTT----CCEEEEEE--ESSCCCSEEEETTTTEEEEEE---------TTTTEEEEEETTTCCEEEEEESCCCCC
T ss_pred cEEEEcCCC----CeEEEEEe--cCCCcceEEECCCCCEEEEEe---------cCCCEEEEEeCCCCeeEEEEecCCCcc
Confidence 599999988 87765542 233467899999999887764 334689999999888644332211 10
Q ss_pred ---c-cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 85 ---L-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 85 ---~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. ......++|||||++|++.... ....|+
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------------------------------------~~~~i~ 167 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIG-----------------------------------------------KESVIW 167 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEES-----------------------------------------------SSCEEE
T ss_pred ccccCCCCCceEEECCCCCEEEEEecC-----------------------------------------------CCceEE
Confidence 0 0013568999999998887421 014789
Q ss_pred EEcC-CCCce-ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCcc
Q 004475 161 LGSL-DGTAK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (751)
Q Consensus 161 ~~~~-~G~~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (751)
++|+ +++.. .+... .....++|+|||++|++... ...+++||+.+++..........
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~------- 227 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------------DGELITIDTADNKILSRKKLLDD------- 227 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------------TSEEEEEETTTTEEEEEEECCCS-------
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------------CCeEEEEECCCCeEEEEEEcCCC-------
Confidence 9999 66443 33323 44678999999999988643 24688999987765433222110
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
........++|+|||++ +++... ..+.|++++.+ .+.......... .. +.|+|||+.|+++.
T Consensus 228 -~~~~~~~~~~~s~dg~~-l~~~~~-----------~~~~v~~~d~~---~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 228 -GKEHFFINISLDTARQR-AFITDS-----------KAAEVLVVDTR---NGNILAKVAAPE-SLAVLFNPARNEAYVTH 290 (353)
T ss_dssp -SSCCCEEEEEEETTTTE-EEEEES-----------SSSEEEEEETT---TCCEEEEEECSS-CCCEEEETTTTEEEEEE
T ss_pred -CCCcccceEEECCCCCE-EEEEeC-----------CCCEEEEEECC---CCcEEEEEEcCC-CceEEECCCCCEEEEEE
Confidence 01122346899999998 655431 23589999885 333322222222 23 89999999877655
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
. ....|++++..++ +.......... ... ++|+|||+.|++...
T Consensus 291 ~---~~~~v~~~d~~~~--~~~~~~~~~~~-~~~------~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 291 R---QAGKVSVIDAKSY--KVVKTFDTPTH-PNS------LALSADGKTLYVSVK 333 (353)
T ss_dssp T---TTTEEEEEETTTT--EEEEEEECCSE-EEE------EEECTTSCEEEEEEE
T ss_pred C---CCCeEEEEECCCC--eEEEEEecCCC-CCe------EEEcCCCCEEEEEEc
Confidence 2 2357889998874 22222222111 111 789999998877663
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=154.47 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=117.5
Q ss_pred HhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 004475 551 LARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 627 (751)
++++|.|++ ++.+|+|.+.... .......+|+.+.++.+ ..+++.|+||||||.+|+.+|.++|++++
T Consensus 51 L~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~ia~~~A~~~P~~v~ 121 (282)
T 1iup_A 51 LSKFYRVIA---PDMVGFGFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVD 121 (282)
T ss_dssp HTTTSEEEE---ECCTTSTTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHSGGGEE
T ss_pred hccCCEEEE---ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHChHHHH
Confidence 367999999 6677888775432 23456667666666654 23689999999999999999999999999
Q ss_pred EEEEccCCCCCCCCc------cCccc--------------ccc--c------ch---hhH---HHHHhc-----------
Q 004475 628 CGIARSGSYNKTLTP------FGFQT--------------EFR--T------LW---EAT---NVYIEM----------- 662 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~------~~~~~--------------~~~--~------~~---~~~---~~~~~~----------- 662 (751)
++|+.++........ +.+.. ... . .+ ..+ ..+...
T Consensus 122 ~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (282)
T 1iup_A 122 RMVLMGAAGTRFDVTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDA 201 (282)
T ss_dssp EEEEESCCCSCCCCCHHHHHHHTCCSCHHHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHH
T ss_pred HHHeeCCccCCCCCCHHHHHHhcCCCcHHHHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccc
Confidence 999998754211000 00000 000 0 00 000 000000
Q ss_pred -C-cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 663 -S-PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 663 -~-~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
. ....+.++++|+|+++|++|..+| ...++.+.+.+. ..++++++++||... .+..+.+.+.+.+||.+.
T Consensus 202 ~~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 273 (282)
T 1iup_A 202 LASSDEDIKTLPNETLIIHGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNEA 273 (282)
T ss_dssp HCCCHHHHTTCCSCEEEEEETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred cccchhhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHhCC----CCeEEEECCCCCCcc-ccCHHHHHHHHHHHHhcC
Confidence 0 013467889999999999999998 888777766553 468999999999875 566788899999999863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-13 Score=138.56 Aligned_cols=268 Identities=12% Similarity=0.153 Sum_probs=167.9
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
..+...+|||||++||... ....|.++++.+++.......... .+..++|+|||+.|+..+.+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~d--- 86 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSNLLVSASDD--- 86 (312)
T ss_dssp SCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEETT---
T ss_pred CcEEEEEECCCCCEEEEee----------CCCeEEEEeCCCcccchhhccCCC----ceEEEEEcCCCCEEEEECCC---
Confidence 3688999999999998863 335677788888775554333221 47789999999999887542
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|.++|+ +++ ...+..+ ..+..+.|+|||+
T Consensus 87 ----------------------------------------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 87 ----------------------------------------------KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp ----------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 46778888 564 3445444 6788999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
+|+....+ ..+.+||+.+++.. .+.. ....+..+.|+|||+. ++..+
T Consensus 121 ~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l~~~~----- 168 (312)
T 4ery_A 121 LIVSGSFD-------------ESVRIWDVKTGKCLKTLPA-------------HSDPVSAVHFNRDGSL-IVSSS----- 168 (312)
T ss_dssp EEEEEETT-------------SCEEEEETTTCCEEEEECC-------------CSSCEEEEEECTTSSE-EEEEE-----
T ss_pred EEEEEeCC-------------CcEEEEECCCCEEEEEecC-------------CCCcEEEEEEcCCCCE-EEEEe-----
Confidence 98876543 35889999865433 2221 1223568899999997 55543
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeE-eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
..+.|.++++.. +.....+. .....+. +.|+|+|+.|+.... ...|.+.++.++ .........
T Consensus 169 -------~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~~~~~~~~~ 233 (312)
T 4ery_A 169 -------YDGLCRIWDTAS--GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKG--KCLKTYTGH 233 (312)
T ss_dssp -------TTSCEEEEETTT--CCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTT--EEEEEECSS
T ss_pred -------CCCcEEEEECCC--CceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCC--cEEEEEEec
Confidence 235788888751 11222222 2234456 899999999887652 246777777764 222222211
Q ss_pred cccccCCCCCCCeeeC-CCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 345 FENVYSDPGSPMMTRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~s-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
..... .....++ ++|++|+..+. ...|++||+.+++.......... .+.
T Consensus 234 ~~~~~----~~~~~~~~~~~~~l~sg~~---------------------dg~i~vwd~~~~~~~~~~~~h~~----~v~- 283 (312)
T 4ery_A 234 KNEKY----CIFANFSVTGGKWIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTD----VVI- 283 (312)
T ss_dssp CCSSS----CCCEEEECSSSCEEEECCT---------------------TSCEEEEETTTCCEEEEECCCSS----CEE-
T ss_pred CCceE----EEEEEEEeCCCcEEEEECC---------------------CCEEEEEECCCchhhhhhhccCC----cEE-
Confidence 11100 0012344 66777766552 23789999998876554432211 122
Q ss_pred eecCCcceeeccCCCEEEEEE
Q 004475 424 LVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~ 444 (751)
.++|+|+++.++...
T Consensus 284 ------~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 284 ------STACHPTENIIASAA 298 (312)
T ss_dssp ------EEEECSSSSEEEEEE
T ss_pred ------EEeecCcCCceEEEE
Confidence 258899998777554
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=145.35 Aligned_cols=196 Identities=8% Similarity=-0.020 Sum_probs=125.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. +...| ..+...|+++||.|++ +|.+|+|.+.... ....+..+|+.++
T Consensus 10 g~~vvllHG~~~-----------~~~~w----~~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 71 (264)
T 2wfl_A 10 QKHFVLVHGGCL-----------GAWIW----YKLKPLLESAGHKVTA---VDLSAAGINPRRLDEIHTFRDYSEPLMEV 71 (264)
T ss_dssp CCEEEEECCTTC-----------CGGGG----TTHHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCcc-----------ccchH----HHHHHHHHhCCCEEEE---eecCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 578999999641 11112 1345567789999999 6677888774421 2355666776666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc--------------Cccc-------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF--------------GFQT------- 647 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~--------------~~~~------- 647 (751)
++.+ +. ..++.|+||||||.+++.++.++|++++++|++++......... .+..
T Consensus 72 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (264)
T 2wfl_A 72 MASI---PP--DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYG 146 (264)
T ss_dssp HHHS---CT--TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEES
T ss_pred HHHh---CC--CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhcc
Confidence 6654 11 25899999999999999999999999999999886421100000 0000
Q ss_pred ---cc-ccchhhHH---------------HHH-h-cCcc----------ccc---CCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 648 ---EF-RTLWEATN---------------VYI-E-MSPI----------THA---NKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 648 ---~~-~~~~~~~~---------------~~~-~-~~~~----------~~~---~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
.. .......+ .+. . ..+. ..+ ...++|+|+++|++|..+| ...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~ 224 (264)
T 2wfl_A 147 NPENPGMSMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFP--VEFQ 224 (264)
T ss_dssp CTTSCEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSC--HHHH
T ss_pred CCCCCcchhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCC--HHHH
Confidence 00 00000000 000 0 0000 001 1136899999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+.+.+. ..++++++++||... .+..+.+.+.+.+|+.
T Consensus 225 ~~~~~~~p----~~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 225 KWFVESVG----ADKVKEIKEADHMGM-LSQPREVCKCLLDISD 263 (264)
T ss_dssp HHHHHHHC----CSEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred HHHHHhCC----CceEEEeCCCCCchh-hcCHHHHHHHHHHHhh
Confidence 87777764 348999999999876 5667888888888874
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=148.41 Aligned_cols=297 Identities=6% Similarity=-0.023 Sum_probs=179.4
Q ss_pred eeecCCCCeEEEEEeecccc------cccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEED------NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~------~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
|.|+|+++.++++....... +..++...||+++.+++..+.+...... .....++|+|++ .++++...
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~~~-~~~~~~~~-- 142 (433)
T 3bws_A 69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG---FQPKSVRFIDNT-RLAIPLLE-- 142 (433)
T ss_dssp ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS---SCBCCCEESSSS-EEEEEBTT--
T ss_pred eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC---CCceEEEEeCCC-eEEEEeCC--
Confidence 44999998887765421110 1112334889988876644333221111 124578999955 56655321
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecC------CC-ceEEeee
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG------TP-AVYTAVE 181 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt------~~-~~~~~~~ 181 (751)
...|+++|+ +|+..+.. .+ ..+..++
T Consensus 143 ----------------------------------------------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 143 ----------------------------------------------DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp ----------------------------------------------SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred ----------------------------------------------CCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 035888888 66554432 22 4678899
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
|+|||+.++.... ...+++||+++++....... ....+..++|+|||+. ++++.
T Consensus 177 ~~~~~~~~~s~~~-------------d~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-l~~~~ 230 (433)
T 3bws_A 177 IPEHNELWVSQMQ-------------ANAVHVFDLKTLAYKATVDL------------TGKWSKILLYDPIRDL-VYCSN 230 (433)
T ss_dssp EGGGTEEEEEEGG-------------GTEEEEEETTTCCEEEEEEC------------SSSSEEEEEEETTTTE-EEEEE
T ss_pred EcCCCEEEEEECC-------------CCEEEEEECCCceEEEEEcC------------CCCCeeEEEEcCCCCE-EEEEe
Confidence 9999986655432 34689999987644322111 1123457899999998 55543
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc----cceeEEEecCCCCCCc
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT----SQTRTWLVCPGSKDVA 336 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~----~~~~l~~~~~~~~~~~ 336 (751)
. ..+.|+++++. .+............. +.|+|||+.|++...... ....|+++++.++ +
T Consensus 231 ~-----------~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--~ 294 (433)
T 3bws_A 231 W-----------ISEDISVIDRK---TKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--K 294 (433)
T ss_dssp T-----------TTTEEEEEETT---TTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--E
T ss_pred c-----------CCCcEEEEECC---CCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--c
Confidence 1 22578889885 333322223344456 899999999887764321 2458889998874 2
Q ss_pred ceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchh
Q 004475 337 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 416 (751)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 416 (751)
......... .... ++|+|||+.|++... ....|++||+.+++..........
T Consensus 295 ~~~~~~~~~-~~~~------~~~~~~g~~l~~~~~--------------------~~~~v~v~d~~~~~~~~~~~~~~~- 346 (433)
T 3bws_A 295 LIDTIGPPG-NKRH------IVSGNTENKIYVSDM--------------------CCSKIEVYDLKEKKVQKSIPVFDK- 346 (433)
T ss_dssp EEEEEEEEE-CEEE------EEECSSTTEEEEEET--------------------TTTEEEEEETTTTEEEEEEECSSS-
T ss_pred EEeeccCCC-Ccce------EEECCCCCEEEEEec--------------------CCCEEEEEECCCCcEEEEecCCCC-
Confidence 233222111 1111 789999998887751 233789999998876554432211
Q ss_pred hhhceeeeecCCcceeeccCCCEEEEEEecCCCC-----------CeEEEEEcCCCceeE
Q 004475 417 YFETAVALVFGQGEEDINLNQLKILTSKESKTEI-----------TQYHILSWPLKKSSQ 465 (751)
Q Consensus 417 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-----------~~l~~~~~~~g~~~~ 465 (751)
+ ..++|+|||+.|++........ +.++++|+.+++...
T Consensus 347 ----~-------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 347 ----P-------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp ----E-------EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred ----C-------CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 2 2368999999888776543322 489999998876554
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-15 Score=153.43 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=84.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+...-|++ ...|+||++||.+. +...|. .+...|+++||.|++ .+.+|+
T Consensus 10 ~~g~~l~y~~~G~~~------~~~~~vv~~hG~~~-----------~~~~~~----~~~~~l~~~g~~vi~---~d~~g~ 65 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD------QQGPLVVLLHGFPE-----------SWYSWR----HQIPALAGAGYRVVA---IDQRGY 65 (356)
T ss_dssp ETTEEEEEEEECCTT------CCSCEEEEECCTTC-----------CGGGGT----TTHHHHHHTTCEEEE---ECCTTS
T ss_pred cCCeEEEEEEecCCC------CCCCEEEEECCCCC-----------cHHHHH----HHHHHHHHcCCEEEE---EcCCCC
Confidence 467788888876642 12588999999641 112221 345677888999999 556677
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 569 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 569 g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
|.+.... .......+|+..+++.+ +.++++++||||||.+|+.++.++|++++++|++++..
T Consensus 66 g~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 66 GRSSKYRVQKAYRIKELVGDVVGVLDSY------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp TTSCCCCSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHc------CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 7764432 23455666666666654 34689999999999999999999999999999988754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-13 Score=139.48 Aligned_cols=299 Identities=8% Similarity=0.031 Sum_probs=179.4
Q ss_pred ccccceeecCCC-CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec-CCcEEEEeecCC
Q 004475 31 AKINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (751)
Q Consensus 31 ~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~ 108 (751)
..+...+||||| +.||... ....|.++++.+++.........+ ...+..++|+| +++.|+..+.+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d- 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGS----------KGGDIILWDYDVQNKTSFIQGMGP--GDAITGMKFNQFNTNQLFVSSIR- 140 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEE----------BTSCEEEEETTSTTCEEEECCCST--TCBEEEEEEETTEEEEEEEEETT-
T ss_pred CCEEEEEECCCCCCEEEEEc----------CCCeEEEEeCCCcccceeeecCCc--CCceeEEEeCCCCCCEEEEEeCC-
Confidence 368899999999 7777753 336788889888776555432111 11478899999 67777766432
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC----ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~----~~~~~~~~S 183 (751)
..|.++++.+ ..+.+... ..+..++|+
T Consensus 141 ------------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 141 ------------------------------------------------GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp ------------------------------------------------TEEEEEETTSCEEEEEECCCCSSCCEEEEEEE
T ss_pred ------------------------------------------------CEEEEEECCCCceEEEeccCCCCCCeEEEEEC
Confidence 4677788855 33333222 457899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|||++|+....+ ..+.+||+.+.....+..+. ..+..++|+|+++.+++..+
T Consensus 173 ~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~s~~-- 224 (383)
T 3ei3_B 173 VSRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMATSS-- 224 (383)
T ss_dssp TTTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEEEEE--
T ss_pred CCCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEEEEe--
Confidence 999988876433 46889999766555543322 33568999999996344443
Q ss_pred cCCCCccccCcccceeeccCCCCCC-CCceEeEeeceeEE-EEEec-CCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEG-EKPEILHKLDLRFS-VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~-~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
..+.|.++++..... ............+. +.|+| ||+.|+.... ...|.++++.++ .....+
T Consensus 225 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~~-~~~~~~ 289 (383)
T 3ei3_B 225 ----------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYDW-SKPDQI 289 (383)
T ss_dssp ----------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTBT-TSCSEE
T ss_pred ----------CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCCC-cccccc
Confidence 235788888752111 22222334556677 99999 9999887652 246777777764 222233
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
..... ............|+|++..++..... ++.+ -......|++||+.+++..........
T Consensus 290 ~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~s~---dg~~---------s~s~d~~i~iwd~~~~~~~~~l~~~~~----- 351 (383)
T 3ei3_B 290 IIHPH-RQFQHLTPIKATWHPMYDLIVAGRYP---DDQL---------LLNDKRTIDIYDANSGGLVHQLRDPNA----- 351 (383)
T ss_dssp EECCB-CCCTTSCCCCCEECSSSSEEEEECBC---CTTT---------CTTCCCCEEEEETTTCCEEEEECBTTB-----
T ss_pred ccccc-cccccccceEEeccCCCCceEEEecC---Cccc---------ccCCCCeEEEEecCCCceeeeecCCCC-----
Confidence 22111 11110111114688888877654421 1111 112345799999998876544432110
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
......++|+|||+.|+.. . . ..|.++++++
T Consensus 352 ----~~~~~~~~~s~~g~~l~s~-s--d--~~i~iw~~~~ 382 (383)
T 3ei3_B 352 ----AGIISLNKFSPTGDVLASG-M--G--FNILIWNRED 382 (383)
T ss_dssp ----CSCCCEEEECTTSSEEEEE-E--T--TEEEEEECC-
T ss_pred ----CceEEEEEEecCccEEEEe-c--C--CcEEEEecCC
Confidence 0111224899999977655 2 2 5688888653
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=151.12 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=127.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc------hhHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSA 585 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~d~ 585 (751)
.|+||++||.+. +...|.. ....| .++|.|++ ++.+|+|.+.... .......+|+
T Consensus 20 ~~~vvllHG~~~-----------~~~~w~~----~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~a~dl 80 (271)
T 1wom_A 20 KASIMFAPGFGC-----------DQSVWNA----VAPAF-EEDHRVIL---FDYVGSGHSDLRAYDLNRYQTLDGYAQDV 80 (271)
T ss_dssp SSEEEEECCTTC-----------CGGGGTT----TGGGG-TTTSEEEE---CCCSCCSSSCCTTCCTTGGGSHHHHHHHH
T ss_pred CCcEEEEcCCCC-----------chhhHHH----HHHHH-HhcCeEEE---ECCCCCCCCCCCcccccccccHHHHHHHH
Confidence 378999999641 1122221 12233 35799999 6677888775321 1245566777
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc--c--Ccccc-----------cc
Q 004475 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--F--GFQTE-----------FR 650 (751)
Q Consensus 586 ~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~--~--~~~~~-----------~~ 650 (751)
.++++.+ +..++.++||||||.+|+.+|.++|++++++|+.++........ + .+... ..
T Consensus 81 ~~~l~~l------~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (271)
T 1wom_A 81 LDVCEAL------DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNY 154 (271)
T ss_dssp HHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCH
T ss_pred HHHHHHc------CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhH
Confidence 6666554 23689999999999999999999999999999988742110000 0 00000 00
Q ss_pred cchh------------h---HHH----HH---------------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 651 TLWE------------A---TNV----YI---------------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 651 ~~~~------------~---~~~----~~---------------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
..|. . .+. +. .......+.++++|+|+++|++|..+| ...++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~--~~~~~~~ 232 (271)
T 1wom_A 155 IGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAP--ATVGKYM 232 (271)
T ss_dssp HHHHHHHHHHHHCCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCC--HHHHHHH
Confidence 0000 0 000 00 011122456789999999999999998 7777766
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
.+.+. ..+++++++++|... .+..+.+.+.+.+||.++
T Consensus 233 ~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 270 (271)
T 1wom_A 233 HQHLP----YSSLKQMEARGHCPH-MSHPDETIQLIGDYLKAH 270 (271)
T ss_dssp HHHSS----SEEEEEEEEESSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHHCC----CCEEEEeCCCCcCcc-ccCHHHHHHHHHHHHHhc
Confidence 65543 468999999999875 566788999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-14 Score=149.62 Aligned_cols=307 Identities=10% Similarity=0.097 Sum_probs=173.9
Q ss_pred cccceeecCCCCeEEEEEeecc-cccccCCceeEEEEEcCCCCee-eccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDE-EDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~-~~~~~~~~~~l~i~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.+...+|||||+.++++..... ..........|.++++.+++.. .+..... ...+..++|+|||++|+..+.+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV---DSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC---SSCEEEEEECSSSSCEEEEESS--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec---CCceEEEEECCCCCeEEEEccC--
Confidence 5778999999995555442110 0000023467888888877532 2211111 1247889999999999887442
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-C---C--CceecCCC-ceEEeeee
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D---G--TAKDFGTP-AVYTAVEP 182 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---G--~~~~lt~~-~~~~~~~~ 182 (751)
..|.++++ + + ....+..+ ..+..++|
T Consensus 89 -----------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 89 -----------------------------------------------GSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp -----------------------------------------------SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred -----------------------------------------------CeEEEeecccccccccchhhccCCccceEEEEE
Confidence 35666666 3 2 33444445 67889999
Q ss_pred CCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 183 SPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 183 SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
+|| ++.|+.... ...|.+||+.+++.......... ...+......+..++|+|++..+++...
T Consensus 122 ~~~~~~~l~s~~~-------------dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 122 NAKQDNVLASGGN-------------NGEIFIWDMNKCTESPSNYTPLT---PGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp CSSSTTBEEEECS-------------SSCEEBCBTTTTSSCTTTCCCBC---CCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred cCCCCCEEEEEcC-------------CCeEEEEECCCCccccccccccc---cccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 999 666665433 23688999987641100000000 0011122334678999999666244432
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCc-eEeEee------ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL------DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~------~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..+.|.++++. .... ..+... ...+. +.|+|++..+++....+.....|.++++.++
T Consensus 186 ------------~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 186 ------------SSNFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp ------------SSSCEEEEETT---TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred ------------CCCCEEEEECC---CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 23578888885 2222 222222 44566 9999998644443322211125666666653
Q ss_pred CCcceeeee-cccccccCCCCCCCeeeCC-CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 334 DVAPRVLFD-RVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 334 ~~~~~~l~~-~~~~~~~~~~~~~~~~~sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
..+..... .....+.. ++|+| ||+.|+..+.+ ..|++||+.+++....+.
T Consensus 251 -~~~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~~d---------------------g~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 251 -NTPLQTLNQGHQKGILS------LDWCHQDEHLLLSSGRD---------------------NTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp -TSCSBCCCSCCSSCEEE------EEECSSCSSCEEEEESS---------------------SEEEEECSSSCCEEEEEE
T ss_pred -CCCcEEeecCccCceeE------EEeCCCCCCeEEEEeCC---------------------CCEEEeeCCCCccceeec
Confidence 12222222 22222222 78999 89888887732 378999998887654433
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
... .....++|+||+..++++... -+.+.++++.+++.
T Consensus 303 ~~~-----------~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 303 ARG-----------NWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLTN 340 (416)
T ss_dssp CSS-----------SCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCCC
T ss_pred CCC-----------CceEEEEECCCCCCEEEEEec---CCcEEEEEccCCCC
Confidence 221 112236899999555555433 35688889877543
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-15 Score=138.62 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHH
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATN 657 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 657 (751)
..+..+|+.++++.+ + .+++++||||||.+|+.++.++|++++++|+++|...... .+
T Consensus 58 ~~~~~~~~~~~~~~~------~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~---~~------------ 115 (191)
T 3bdv_A 58 LDRWVLAIRRELSVC------T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF---EI------------ 115 (191)
T ss_dssp HHHHHHHHHHHHHTC------S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG---TC------------
T ss_pred HHHHHHHHHHHHHhc------C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc---cC------------
Confidence 345555555555432 3 6899999999999999999999999999999998754210 00
Q ss_pred HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc--cHHHHHHHHHHH
Q 004475 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE--NVMHVIWETDRW 735 (751)
Q Consensus 658 ~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~f 735 (751)
.....+.++++|+|+++|++|..+| +..++.+.+.+ .++++++++++|...... ...+.++.+.+|
T Consensus 116 -----~~~~~~~~~~~P~lii~g~~D~~~~--~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~f 183 (191)
T 3bdv_A 116 -----DDRIQASPLSVPTLTFASHNDPLMS--FTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEF 183 (191)
T ss_dssp -----TTTSCSSCCSSCEEEEECSSBTTBC--HHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHH
T ss_pred -----ccccccccCCCCEEEEecCCCCcCC--HHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHH
Confidence 0003456788999999999999998 88888888876 358999999999975421 344556888888
Q ss_pred HHHHh
Q 004475 736 LQKYC 740 (751)
Q Consensus 736 l~~~l 740 (751)
|++..
T Consensus 184 l~~~~ 188 (191)
T 3bdv_A 184 SEILI 188 (191)
T ss_dssp HHTTC
T ss_pred HHHhc
Confidence 87653
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=148.76 Aligned_cols=215 Identities=20% Similarity=0.206 Sum_probs=128.5
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
..+...+|..+.....-+++ .|.||++||++... .. ......+...||.|++ +
T Consensus 17 ~~~~~~~g~~l~~~~~g~~~--------g~~vvllHG~~~~~-------------~~---~~~~~~~~~~~~~vi~---~ 69 (317)
T 1wm1_A 17 GWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGG-------------IS---PHHRQLFDPERYKVLL---F 69 (317)
T ss_dssp EEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCC-------------CC---GGGGGGSCTTTEEEEE---E
T ss_pred eEEEcCCCcEEEEEEcCCCC--------CCcEEEECCCCCcc-------------cc---hhhhhhccccCCeEEE---E
Confidence 34454567777665554322 35689999964110 00 0111122357999999 6
Q ss_pred CCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC
Q 004475 564 PIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639 (751)
Q Consensus 564 ~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~ 639 (751)
|.+|+|.+.... .......+|+.++++.+ +.+++.|+||||||.+|+.+|.++|++++++|+.++.....
T Consensus 70 D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 143 (317)
T 1wm1_A 70 DQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRK 143 (317)
T ss_dssp CCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCH
T ss_pred CCCCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCch
Confidence 677888774321 22445566665555543 34689999999999999999999999999999987642210
Q ss_pred -------------CCc--c-----Ccccccc-----------------------cch-------------------hhHH
Q 004475 640 -------------LTP--F-----GFQTEFR-----------------------TLW-------------------EATN 657 (751)
Q Consensus 640 -------------~~~--~-----~~~~~~~-----------------------~~~-------------------~~~~ 657 (751)
..+ + ....... ..| ....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (317)
T 1wm1_A 144 QRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDD 223 (317)
T ss_dssp HHHHHHHTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHH
T ss_pred hhhhHHhhccchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccc
Confidence 000 0 0000000 000 0000
Q ss_pred ---H-------HHh-------cC-cccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 658 ---V-------YIE-------MS-PITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 658 ---~-------~~~-------~~-~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
. +.. .. ....+.+++ +|+|+++|++|..+| +..++.+.+.+. ..++++++++||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~--~~~~~~l~~~~p----~~~~~~i~~~gH~ 297 (317)
T 1wm1_A 224 FALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQ--VQNAWDLAKAWP----EAELHIVEGAGHS 297 (317)
T ss_dssp HHHHHHHHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSC--HHHHHHHHHHCT----TSEEEEETTCCSS
T ss_pred hhhhHHHhhhhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCC--HHHHHHHHhhCC----CceEEEECCCCCC
Confidence 0 000 00 122345564 999999999999998 888877777664 3589999999998
Q ss_pred CCccccHHHHHHHHHHHHH
Q 004475 719 YAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~ 737 (751)
....+....+...+.+|+.
T Consensus 298 ~~~~~~~~~~~~~i~~f~~ 316 (317)
T 1wm1_A 298 YDEPGILHQLMIATDRFAG 316 (317)
T ss_dssp TTSHHHHHHHHHHHHHHTC
T ss_pred CCCcchHHHHHHHHHHHhc
Confidence 6433334555666666653
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=150.37 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=133.7
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|..+....+.+++ .|+||++||.+.. ...+. .....| .+||.|++ ++.+|+|
T Consensus 18 ~g~~l~~~~~g~~~--------~~~vl~lHG~~~~-----------~~~~~----~~~~~l-~~~~~v~~---~d~~G~G 70 (299)
T 3g9x_A 18 LGERMHYVDVGPRD--------GTPVLFLHGNPTS-----------SYLWR----NIIPHV-APSHRCIA---PDLIGMG 70 (299)
T ss_dssp TTEEEEEEEESCSS--------SCCEEEECCTTCC-----------GGGGT----TTHHHH-TTTSCEEE---ECCTTST
T ss_pred CCeEEEEEecCCCC--------CCEEEEECCCCcc-----------HHHHH----HHHHHH-ccCCEEEe---eCCCCCC
Confidence 67778777765432 4789999996421 12222 223444 57999999 5666777
Q ss_pred CCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cC--
Q 004475 570 DKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FG-- 644 (751)
Q Consensus 570 ~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~~-- 644 (751)
.+.... ....+..+|+.++++.+ +.++++++|||+||.+|+.+|.++|++++++|++++........ +.
T Consensus 71 ~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 144 (299)
T 3g9x_A 71 KSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEF 144 (299)
T ss_dssp TSCCCCCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGG
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHh------CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchH
Confidence 764432 34556667777666654 34689999999999999999999999999999998543321000 00
Q ss_pred c-------ccc---------c------------ccch--hhH-----------------HHHHhc--------------C
Q 004475 645 F-------QTE---------F------------RTLW--EAT-----------------NVYIEM--------------S 663 (751)
Q Consensus 645 ~-------~~~---------~------------~~~~--~~~-----------------~~~~~~--------------~ 663 (751)
. ... . .... ... ..+... .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (299)
T 3g9x_A 145 ARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEA 224 (299)
T ss_dssp GHHHHHHHTSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhh
Confidence 0 000 0 0000 000 000000 0
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 664 PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 664 ~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
....+.++++|+|+++|++|..+| +..++.+.+.+. .++++++++++|.+. .+..+.+.+.+.+|+...
T Consensus 225 ~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~~ 293 (299)
T 3g9x_A 225 YMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPAL 293 (299)
T ss_dssp HHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGGG
T ss_pred hhhhcccCCCCeEEEecCCCCCCC--HHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhhh
Confidence 111245678999999999999998 888877776653 468999999999875 455666666666665544
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=145.75 Aligned_cols=213 Identities=14% Similarity=0.115 Sum_probs=135.1
Q ss_pred cCCC-ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 488 RKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 488 ~~~~-~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
..+| ..+.....-+ ++.|.||++||.+.+. .....|. .....|++ .|.|++ +|.+
T Consensus 19 ~~~g~~~l~y~~~G~--------g~~~~vvllHG~~pg~-----------~~~~~w~-~~~~~L~~-~~~via---~Dl~ 74 (291)
T 2wue_A 19 DVDGPLKLHYHEAGV--------GNDQTVVLLHGGGPGA-----------ASWTNFS-RNIAVLAR-HFHVLA---VDQP 74 (291)
T ss_dssp ESSSEEEEEEEEECT--------TCSSEEEEECCCCTTC-----------CHHHHTT-TTHHHHTT-TSEEEE---ECCT
T ss_pred EeCCcEEEEEEecCC--------CCCCcEEEECCCCCcc-----------chHHHHH-HHHHHHHh-cCEEEE---ECCC
Confidence 3467 6776655421 2246899999953110 0111111 22344544 499999 6677
Q ss_pred CCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--CC
Q 004475 567 GEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT--LT 641 (751)
Q Consensus 567 g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~--~~ 641 (751)
|+|.+.... ....+..+|+.++++.+ +.+++.|+||||||.+|+.+|.++|++++++|++++..... ..
T Consensus 75 G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~ 148 (291)
T 2wue_A 75 GYGHSDKRAEHGQFNRYAAMALKGLFDQL------GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFA 148 (291)
T ss_dssp TSTTSCCCSCCSSHHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSS
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHh------CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccc
Confidence 888775432 23556667777666655 23689999999999999999999999999999998754211 00
Q ss_pred c--c-Cc---------cc-------------cccc---c-----h---hhHHH----HH---h-cC-----cc--cccCC
Q 004475 642 P--F-GF---------QT-------------EFRT---L-----W---EATNV----YI---E-MS-----PI--THANK 670 (751)
Q Consensus 642 ~--~-~~---------~~-------------~~~~---~-----~---~~~~~----~~---~-~~-----~~--~~~~~ 670 (751)
. . .. .. .... . + ..+.. +. . .. .. ..+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (291)
T 2wue_A 149 PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYR 228 (291)
T ss_dssp CSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGG
T ss_pred cccchhhHHHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhh
Confidence 0 0 00 00 0000 0 0 00000 00 0 00 11 45667
Q ss_pred CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 671 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 671 ~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+++|+|+++|++|..+| ...++.+.+.+. ..+++++++++|... .+..+.+.+.+.+||.
T Consensus 229 i~~P~lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 229 LRQPVLLIWGREDRVNP--LDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp CCSCEEEEEETTCSSSC--GGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred CCCCeEEEecCCCCCCC--HHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 89999999999999998 887777766553 468999999999875 4567788888888885
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-15 Score=150.75 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=133.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+- + .|+||++||.+. ....| ......|+++||.|++ ++.+|+
T Consensus 18 ~~g~~l~y~~~G--------~--g~~vvllHG~~~--------------~~~~w-~~~~~~L~~~g~~via---~Dl~G~ 69 (328)
T 2cjp_A 18 VNGLNMHLAELG--------E--GPTILFIHGFPE--------------LWYSW-RHQMVYLAERGYRAVA---PDLRGY 69 (328)
T ss_dssp ETTEEEEEEEEC--------S--SSEEEEECCTTC--------------CGGGG-HHHHHHHHTTTCEEEE---ECCTTS
T ss_pred CCCcEEEEEEcC--------C--CCEEEEECCCCC--------------chHHH-HHHHHHHHHCCcEEEE---ECCCCC
Confidence 467677665542 1 378999999641 11111 1344567778999999 667788
Q ss_pred CCCCCC------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--
Q 004475 569 GDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-- 640 (751)
Q Consensus 569 g~~~~~------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-- 640 (751)
|.+... ........+|+.++++.+.. +.+++.|+||||||.+|+.+|.++|++++++|++++......
T Consensus 70 G~S~~~~~~~~~~~~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~ 145 (328)
T 2cjp_A 70 GDTTGAPLNDPSKFSILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPK 145 (328)
T ss_dssp TTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCSS
T ss_pred CCCCCcCcCCcccccHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccCCCccccc
Confidence 877543 12356677888888877731 246899999999999999999999999999999875432100
Q ss_pred -Ccc-------C-------cccc-------------------------------cc-------------cchhh---HHH
Q 004475 641 -TPF-------G-------FQTE-------------------------------FR-------------TLWEA---TNV 658 (751)
Q Consensus 641 -~~~-------~-------~~~~-------------------------------~~-------------~~~~~---~~~ 658 (751)
... . +... .. ..|.. .+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (328)
T 2cjp_A 146 MNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDY 225 (328)
T ss_dssp CCHHHHHHHHHCTTBHHHHTSSTTHHHHHHHHHCHHHHHHHHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHH
T ss_pred CChHHHHHhhcccchHHHhhhCCCcHHHHhhccCHHHHHHHHhcccCCCcccccccchhhhcccccccCcCCCCHHHHHH
Confidence 000 0 0000 00 00000 000
Q ss_pred H----H------------hc------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH--HHHHhCCCcE-EEEEeC
Q 004475 659 Y----I------------EM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF--DALKGHGALS-RLVLLP 713 (751)
Q Consensus 659 ~----~------------~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~--~~l~~~~~~~-~~~~~~ 713 (751)
+ . .. .....+.++++|+|+++|++|..+| +..+.+.. +.+.+.-... ++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~i~ 303 (328)
T 2cjp_A 226 YANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYH--IPGAKEYIHNGGFKKDVPLLEEVVVLE 303 (328)
T ss_dssp HHHHHHHHCSHHHHHHHHTHHHHHHHTGGGTTCCCCSCEEEEEETTCGGGG--STTHHHHHHHSHHHHHSTTBCCCEEET
T ss_pred HHHHhcccCCcchHHHHHhcccchhhhhhccCCccCCCEEEEEeCCccccc--CcchhhhhhhhhHHHHhcCCeeEEEcC
Confidence 0 0 00 0001246789999999999999987 54332222 2333322345 789999
Q ss_pred CCCCcCCccccHHHHHHHHHHHHH
Q 004475 714 FEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 714 ~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
++||... .+..+.+.+.+.+||.
T Consensus 304 ~~gH~~~-~e~p~~~~~~i~~fl~ 326 (328)
T 2cjp_A 304 GAAHFVS-QERPHEISKHIYDFIQ 326 (328)
T ss_dssp TCCSCHH-HHSHHHHHHHHHHHHT
T ss_pred CCCCCcc-hhCHHHHHHHHHHHHH
Confidence 9999876 5567888999999985
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=149.66 Aligned_cols=209 Identities=13% Similarity=0.049 Sum_probs=134.7
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
..+.+...-|.+ +.|.||++||.+. +...| . .+...|+++||.|++ +|.+|+|.+
T Consensus 34 ~~l~y~~~G~~~-------~g~~vvllHG~~~-----------~~~~w---~-~~~~~L~~~g~rvia---~Dl~G~G~S 88 (310)
T 1b6g_A 34 LRAHYLDEGNSD-------AEDVFLCLHGEPT-----------WSYLY---R-KMIPVFAESGARVIA---PDFFGFGKS 88 (310)
T ss_dssp CEEEEEEEECTT-------CSCEEEECCCTTC-----------CGGGG---T-TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEeCCCC-------CCCEEEEECCCCC-----------chhhH---H-HHHHHHHhCCCeEEE---eCCCCCCCC
Confidence 677776665421 0368999999641 11112 1 345677888999999 677788887
Q ss_pred CCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC--CC------
Q 004475 572 LPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN--KT------ 639 (751)
Q Consensus 572 ~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d--~~------ 639 (751)
.... .......+|+.++++.+. .+++.|+||||||.+|+.+|.++|++++++|+.++... ..
T Consensus 89 ~~~~~~~~y~~~~~a~dl~~ll~~l~------~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~ 162 (310)
T 1b6g_A 89 DKPVDEEDYTFEFHRNFLLALIERLD------LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFS 162 (310)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHHT------CCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHH
T ss_pred CCCCCcCCcCHHHHHHHHHHHHHHcC------CCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchh
Confidence 5432 235677788888877762 35899999999999999999999999999999887542 10
Q ss_pred ----CCccC---cc-----cc-cc---------cch--hhHHHHH-----------------h-c-----------Cccc
Q 004475 640 ----LTPFG---FQ-----TE-FR---------TLW--EATNVYI-----------------E-M-----------SPIT 666 (751)
Q Consensus 640 ----~~~~~---~~-----~~-~~---------~~~--~~~~~~~-----------------~-~-----------~~~~ 666 (751)
..... +. .. .. ... ...+.+. . . ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 1b6g_A 163 AFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAIS 242 (310)
T ss_dssp HTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhh
Confidence 00000 00 00 00 000 0000000 0 0 0012
Q ss_pred ccC-CCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 667 HAN-KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 667 ~~~-~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+. ++++|+|+++|++|..+| ..++.+.+.+... ....++++++||... . ..+.+.+.+.+||.+
T Consensus 243 ~l~~~i~~P~Lvi~G~~D~~~~---~~~~~~~~~ip~~--~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 243 FWQNDWNGQTFMAIGMKDKLLG---PDVMYPMKALING--CPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp HHHHTCCSEEEEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEeccCcchhh---hHHHHHHHhcccc--cceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 345 899999999999999875 5566676666533 222333499999987 4 788999999999975
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-15 Score=146.66 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~ 590 (751)
.|.||++||.+. +...| ......|++ .|.|++ ++.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~vvllHG~~~-----------~~~~w----~~~~~~L~~-~~~via---~Dl~G~G~S~~~~~~~~~~~a~dl~~~l~ 76 (255)
T 3bf7_A 16 NSPIVLVHGLFG-----------SLDNL----GVLARDLVN-DHNIIQ---VDVRNHGLSPREPVMNYPAMAQDLVDTLD 76 (255)
T ss_dssp CCCEEEECCTTC-----------CTTTT----HHHHHHHTT-TSCEEE---ECCTTSTTSCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcc-----------cHhHH----HHHHHHHHh-hCcEEE---ecCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 477999999641 11111 123444544 499999 6667888775432 234566777777777
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC-CCCCCCcc-------------Ccccc--------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YNKTLTPF-------------GFQTE-------- 648 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~-~d~~~~~~-------------~~~~~-------- 648 (751)
.+ +.+++.++||||||.+|+.+|.++|++++++|+.++. ........ .....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T 3bf7_A 77 AL------QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMR 150 (255)
T ss_dssp HH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHT
T ss_pred Hc------CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHh
Confidence 65 2358999999999999999999999999999987532 11100000 00000
Q ss_pred -cccc---------------hhh-HHH----HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 004475 649 -FRTL---------------WEA-TNV----YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALS 707 (751)
Q Consensus 649 -~~~~---------------~~~-~~~----~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~ 707 (751)
.... |.. ... +........+.++++|+|+++|++|..+| +..++.+.+.+ ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~----~~~ 224 (255)
T 3bf7_A 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVS--EQYRDDLLAQF----PQA 224 (255)
T ss_dssp TTCCCHHHHHHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTC--GGGHHHHHHHC----TTE
T ss_pred hhcchhHHHHHHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCC--HHHHHHHHHHC----CCC
Confidence 0000 000 000 00000001245789999999999999988 77776666554 347
Q ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 708 RLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 708 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+++++++++|... .+..+.+.+.+.+||.+|
T Consensus 225 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp EECCBTTCCSCHH-HHCHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCCCccc-cCCHHHHHHHHHHHHhcC
Confidence 8999999999875 556788899999999753
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=145.75 Aligned_cols=196 Identities=14% Similarity=0.084 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHH-HHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
|+||++||.+... ..+..|. ... ..|+ ++|.|++ ++.+|+|.+.... .......+|+.++
T Consensus 37 ~~vvllHG~~~~~-----------~~~~~~~-~~~~~~l~-~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 100 (289)
T 1u2e_A 37 ETVVLLHGSGPGA-----------TGWANFS-RNIDPLVE-AGYRVIL---LDCPGWGKSDSVVNSGSRSDLNARILKSV 100 (289)
T ss_dssp SEEEEECCCSTTC-----------CHHHHTT-TTHHHHHH-TTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCccc-----------chhHHHH-HhhhHHHh-cCCeEEE---EcCCCCCCCCCCCccccCHHHHHHHHHHH
Confidence 3899999953211 1111121 123 3444 4599999 6667888775432 2344445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--CCccC---c---------cc-------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT--LTPFG---F---------QT------- 647 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~--~~~~~---~---------~~------- 647 (751)
++.+ +.+++.|+||||||.+|+.+|.++|++++++|+.++..... ..... . ..
T Consensus 101 l~~l------~~~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (289)
T 1u2e_A 101 VDQL------DIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLM 174 (289)
T ss_dssp HHHT------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHh------CCCceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHH
Confidence 5433 34689999999999999999999999999999988754210 00000 0 00
Q ss_pred ------ccc----c----chh----hHHHHH----h--------cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 648 ------EFR----T----LWE----ATNVYI----E--------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 648 ------~~~----~----~~~----~~~~~~----~--------~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
... . .+. .+..+. . ......+.++++|+|+++|++|..+| +..++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~ 252 (289)
T 1u2e_A 175 MDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVP--MDAGLRLL 252 (289)
T ss_dssp HHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred HHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccC--HHHHHHHH
Confidence 000 0 000 000000 0 01223567789999999999999998 88888777
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+. ..+++++++++|... .+..+.+.+.+.+||.
T Consensus 253 ~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 253 SGIA----GSELHIFRDCGHWAQ-WEHADAFNQLVLNFLA 287 (289)
T ss_dssp HHST----TCEEEEESSCCSCHH-HHTHHHHHHHHHHHHT
T ss_pred hhCC----CcEEEEeCCCCCchh-hcCHHHHHHHHHHHhc
Confidence 6654 358999999999875 4556778888888885
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=145.53 Aligned_cols=265 Identities=11% Similarity=0.105 Sum_probs=170.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|++|++.+ |+...+........+...+|||||++|+... ..+.|.++++.+++..+.......
T Consensus 112 d~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 112 ERNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGL----------GNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp TTEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEEEECCCSS
T ss_pred CCeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEEC----------CCCeEEEEECcCCeEEEEecCCCC
Confidence 34799999998 8887766444444688999999999998863 346788889888775443332221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++| +++.|+..+.+ ..|.+++
T Consensus 178 ----~v~~~~~--~~~~l~~~~~d-------------------------------------------------g~i~i~d 202 (401)
T 4aez_A 178 ----RVGCLSW--NRHVLSSGSRS-------------------------------------------------GAIHHHD 202 (401)
T ss_dssp ----CEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----ceEEEEE--CCCEEEEEcCC-------------------------------------------------CCEEEEe
Confidence 3667788 56677766432 4677777
Q ss_pred CC-C--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 164 LD-G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~~-G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+. + ....+..+ ..+..++|+|||++|+....+ ..+.+||+.+++...... .
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~------------~ 257 (401)
T 4aez_A 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKT------------N 257 (401)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEEC------------C
T ss_pred cccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEec------------C
Confidence 73 3 33444444 778899999999999886543 368899998754432211 1
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..++|+|+|.. ++.+.. ....+.|+++++. .+...........+. +.|+|+|+.|+.....
T Consensus 258 ~~~~v~~~~~~p~~~~-ll~~~~---------gs~d~~i~i~d~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSN-LLATGG---------GTMDKQIHFWNAA---TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp CSSCCCEEEECTTSTT-EEEEEC---------CTTTCEEEEEETT---TCCEEEEEECSSCEEEEEECSSSSEEEEEECT
T ss_pred CcceEEEEEECCCCCC-EEEEec---------CCCCCEEEEEECC---CCCEEEEEeCCCcEEEEEECCCCCeEEEEeec
Confidence 1233568999999998 444321 0123578899885 334433344555677 9999999999886532
Q ss_pred cccceeEEEecCCCCCCcceeee--ecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCcee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 396 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (751)
.. ..|.+.+..++ ....+. ......+.. ++|+|||++|+..+.+ ..|
T Consensus 325 ~d--g~i~v~~~~~~--~~~~~~~~~~h~~~v~~------~~~s~dg~~l~s~~~d---------------------g~i 373 (401)
T 4aez_A 325 PD--NNLSIWSYSSS--GLTKQVDIPAHDTRVLY------SALSPDGRILSTAASD---------------------ENL 373 (401)
T ss_dssp TT--CEEEEEEEETT--EEEEEEEEECCSSCCCE------EEECTTSSEEEEECTT---------------------SEE
T ss_pred CC--CcEEEEecCCc--cceeEEEecCCCCCEEE------EEECCCCCEEEEEeCC---------------------CcE
Confidence 22 35555565553 222221 122222222 7899999998887732 378
Q ss_pred EEEecCCCce
Q 004475 397 DLFDINTGSK 406 (751)
Q Consensus 397 ~~~d~~~g~~ 406 (751)
.+|++.+++.
T Consensus 374 ~iw~~~~~~~ 383 (401)
T 4aez_A 374 KFWRVYDGDH 383 (401)
T ss_dssp EEEECCC---
T ss_pred EEEECCCCcc
Confidence 8999987764
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=144.14 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=127.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 588 (751)
.|.||++||.+. +...| . .+...|+++||.|++ +|.+|+|.+.... ....+..+|+.++
T Consensus 4 ~~~vvllHG~~~-----------~~~~w---~-~~~~~L~~~g~rVia---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~ 65 (273)
T 1xkl_A 4 GKHFVLVHGACH-----------GGWSW---Y-KLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMEL 65 (273)
T ss_dssp CCEEEEECCTTC-----------CGGGG---T-THHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCC-----------CcchH---H-HHHHHHHhCCCEEEE---ecCCCCCCCccCcccccCHHHHHHHHHHH
Confidence 378999999641 11112 1 345567789999999 6777888875422 2345556666555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc--------------Cccc-------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF--------------GFQT------- 647 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~--------------~~~~------- 647 (751)
++.+ +. ..++.|+||||||.+|+.+|.++|++++++|++++......... .+..
T Consensus 66 l~~l---~~--~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (273)
T 1xkl_A 66 MESL---SA--DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYG 140 (273)
T ss_dssp HHTS---CS--SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECS
T ss_pred HHHh---cc--CCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhcc
Confidence 5433 11 25899999999999999999999999999999886421100000 0000
Q ss_pred ---cc-ccchhhHH---------------HH-Hh-cCcc----------ccc---CCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 648 ---EF-RTLWEATN---------------VY-IE-MSPI----------THA---NKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 648 ---~~-~~~~~~~~---------------~~-~~-~~~~----------~~~---~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
.. ........ .+ .. ..+. ..+ ...++|+|+++|++|..+| +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~ 218 (273)
T 1xkl_A 141 SPEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQ 218 (273)
T ss_dssp CTTSCCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHH
T ss_pred CCCCCccccccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCC--HHHH
Confidence 00 00000000 00 00 0000 001 1136899999999999998 8888
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+.+.+. ..+++++|++||... .+..+.+.+.+.+|+.+...
T Consensus 219 ~~~~~~~p----~~~~~~i~~aGH~~~-~e~P~~~~~~i~~fl~~~~~ 261 (273)
T 1xkl_A 219 RWQIDNIG----VTEAIEIKGADHMAM-LCEPQKLCASLLEIAHKYNM 261 (273)
T ss_dssp HHHHHHHC----CSEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhCC----CCeEEEeCCCCCCch-hcCHHHHHHHHHHHHHHhcc
Confidence 87777664 348999999999876 56778899999999987543
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=149.95 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
|.||++||.+. +...|. .....|++ .|.|++ ++.+|+|.+.... ......++|+.+++
T Consensus 17 ~~vvllHG~~~-----------~~~~~~----~~~~~L~~-~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~dl~~~l 77 (269)
T 2xmz_A 17 QVLVFLHGFLS-----------DSRTYH----NHIEKFTD-NYHVIT---IDLPGHGEDQSSMDETWNFDYITTLLDRIL 77 (269)
T ss_dssp EEEEEECCTTC-----------CGGGGT----TTHHHHHT-TSEEEE---ECCTTSTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCC-----------cHHHHH----HHHHHHhh-cCeEEE---ecCCCCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 46999999641 112222 23445554 599999 6677888775432 23556667666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc------------------Ccc---c-
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF------------------GFQ---T- 647 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~------------------~~~---~- 647 (751)
+.+ +.+++.++||||||.+|+.+|.++|++++++|+.++......... ... .
T Consensus 78 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (269)
T 2xmz_A 78 DKY------KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVND 151 (269)
T ss_dssp GGG------TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHc------CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHH
Confidence 554 236899999999999999999999999999999987543211000 000 0
Q ss_pred -ccccchh-----h---------------HH----HHHh------cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 648 -EFRTLWE-----A---------------TN----VYIE------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 648 -~~~~~~~-----~---------------~~----~~~~------~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
.....+. . .. .+.. ......+.++++|+|+++|++|..+| .... ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~-~~ 228 (269)
T 2xmz_A 152 WEKLPLFQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFV--QIAK-KM 228 (269)
T ss_dssp HTTSGGGGGGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHH--HHHH-HH
T ss_pred HHhCccccccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccC--HHHH-HH
Confidence 0000000 0 00 0000 01123466789999999999999987 5543 34
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
.+.+ ..++++++++++|... .+....+.+.+.+||.+.
T Consensus 229 ~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 229 ANLI----PNSKCKLISATGHTIH-VEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp HHHS----TTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred HhhC----CCcEEEEeCCCCCChh-hcCHHHHHHHHHHHHHHh
Confidence 4333 4579999999999976 456788999999999864
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=149.41 Aligned_cols=220 Identities=11% Similarity=0.034 Sum_probs=132.9
Q ss_pred ceEEEEEEcCC-CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEE
Q 004475 480 QKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 557 (751)
Q Consensus 480 ~~e~i~~~~~~-~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v 557 (751)
..+.+++.+.. +..+..++|+|+++++. +++|+|+++||++. +..........+++ .+.+|
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~--~~yPvly~l~G~~~---------------~~~~~~~~~~~l~~~~~~iv 74 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPA--SGYPILYMLDGNAV---------------MDRLDDELLKQLSEKTPPVI 74 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCT--TCEEEEEESSHHHH---------------HHHCCHHHHHHHTTSCCCEE
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCC--CCCCEEEEeeChhH---------------HHHHHHHHHHHhccCCCeEE
Confidence 46777787755 56899999999987654 35998877776421 00011122344554 56777
Q ss_pred EEcCCCCCC-------C--CCCCC-------------CCchhHHHHHHHH-HHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 004475 558 LAGPSIPII-------G--EGDKL-------------PNDRFVEQLVSSA-EAAVEEVVRRGVADPSRIAVGGHSYGAFM 614 (751)
Q Consensus 558 ~~~~~~~~~-------g--~g~~~-------------~~~~~~~~~~~d~-~~~v~~l~~~~~id~~~i~l~G~S~GG~~ 614 (751)
+.+++.... + +.... ...........-+ .+++.++.++..+|++|++|+||||||++
T Consensus 75 V~v~~~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~ 154 (278)
T 2gzs_A 75 VAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLF 154 (278)
T ss_dssp EEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHH
T ss_pred EEEcCCCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHH
Confidence 753332110 0 00000 0000111212222 23455565666688889999999999999
Q ss_pred HHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCC--------
Q 004475 615 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKV-------- 686 (751)
Q Consensus 615 a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v-------- 686 (751)
|+.++.+ |+.|+++++++|...+.. . . .......... . .....|+++.+|+.|..+
T Consensus 155 a~~~~~~-p~~f~~~~~~s~~~~~~~-------~--~---~~~~~~~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~ 218 (278)
T 2gzs_A 155 VLDSWLS-SSYFRSYYSASPSLGRGY-------D--A---LLSRVTAVEP--L-QFCTKHLAIMEGSATQGDNRETHAVG 218 (278)
T ss_dssp HHHHHHH-CSSCSEEEEESGGGSTTH-------H--H---HHHHHHTSCT--T-TTTTCEEEEEECCC-----------C
T ss_pred HHHHHhC-ccccCeEEEeCcchhcCc-------c--h---HHHHHHHhhc--c-CCCCCcEEEEecCccccccccchhhh
Confidence 9999999 999999999998642110 0 0 0001111111 0 112468999999999763
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 687 GLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 687 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+ ..++++++++|+++|.++++.++|+++|.+... .. +...+.||..
T Consensus 219 ~--~~~~~~~~~~L~~~g~~~~~~~~~g~~H~~~~~---~~-~~~~l~fl~~ 264 (278)
T 2gzs_A 219 V--LSKIHTTLTILKDKGVNAVFWDFPNLGHGPMFN---AS-FRQALLDISG 264 (278)
T ss_dssp H--HHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHH---HH-HHHHHHHHTT
T ss_pred h--HHHHHHHHHHHHcCCCeeEEEEcCCCCccchhH---HH-HHHHHHHHhh
Confidence 4 688999999999999999999999999985422 22 2345667754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-13 Score=152.13 Aligned_cols=246 Identities=10% Similarity=0.062 Sum_probs=154.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+|||||++||+.. ...+.++++++++......+... .+..++|||||++|+..+.+
T Consensus 20 ~~~~~~~spdg~~l~~~~-----------~~~v~l~~~~~~~~~~~~~~h~~----~v~~~~~spdg~~lasg~~d---- 80 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-----------GTSVYTVPVGSLTDTEIYTEHSH----QTTVAKTSPSGYYCASGDVH---- 80 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-----------TTEEEEEETTCSSCCEEECCCSS----CEEEEEECTTSSEEEEEETT----
T ss_pred ceeEEeeCCCCCEEEeCC-----------CCEEEEecCCCcccCeEecCCCC----ceEEEEECCCCcEEEEEeCC----
Confidence 356788999999999953 24788889877654443322221 37789999999999987543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecCCC-ceEEeeeeCCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt~~-~~~~~~~~SpDG 186 (751)
..|.++|+ +++. ..+..+ ..+..++|||||
T Consensus 81 ---------------------------------------------~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 81 ---------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp ---------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred ---------------------------------------------CCEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence 46777777 4422 233334 678899999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++|+....... ....+++||... ....+ ......+..++|+||++..|+..+
T Consensus 116 ~~l~~~~~~~~---------~~~~v~~wd~~~-~~~~l-------------~gh~~~v~~v~f~p~~~~~l~s~s----- 167 (611)
T 1nr0_A 116 KRIAAVGEGRE---------RFGHVFLFDTGT-SNGNL-------------TGQARAMNSVDFKPSRPFRIISGS----- 167 (611)
T ss_dssp CEEEEEECCSS---------CSEEEEETTTCC-BCBCC-------------CCCSSCEEEEEECSSSSCEEEEEE-----
T ss_pred CEEEEEECCCC---------ceeEEEEeeCCC-Cccee-------------cCCCCCceEEEECCCCCeEEEEEe-----
Confidence 99988764421 023577787432 12222 122234678999999986344433
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee---
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD--- 342 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--- 342 (751)
..+.+.+++..+ ......+......+. ++|+|||+.|+..+. ...|.+.+..++ .....+..
T Consensus 168 -------~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g-~~~~~~~~~~~ 233 (611)
T 1nr0_A 168 -------DDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDG-TKTGVFEDDSL 233 (611)
T ss_dssp -------TTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTC-CEEEECBCTTS
T ss_pred -------CCCeEEEEECCC--CeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCC-cEeeeeccccc
Confidence 234677777641 112233444555677 999999998887652 234555666553 11112211
Q ss_pred ---cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 343 ---RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 343 ---~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.....+.. ++|+|||+.|+..+.+ ..|.+||+.+++.....
T Consensus 234 ~~~~h~~~V~~------v~~spdg~~l~s~s~D---------------------~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 234 KNVAHSGSVFG------LTWSPDGTKIASASAD---------------------KTIKIWNVATLKVEKTI 277 (611)
T ss_dssp SSCSSSSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEE------EEECCCCCEEEEEeCC---------------------CeEEEEeCCCCceeeee
Confidence 11122222 7899999999887733 37899999888765443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-14 Score=148.31 Aligned_cols=259 Identities=10% Similarity=0.108 Sum_probs=152.8
Q ss_pred cceeEEeecCCCCCCCCcc-cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCC----C-Ceeec
Q 004475 4 FTGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----G-EAKPL 77 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~----g-~~~~l 77 (751)
...|++|++.+ ++.. .+..+.....+...+|||||++||... ....|.++++.+ . ....+
T Consensus 44 d~~v~iw~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~vw~~~~~~~~~~~~~~~ 109 (416)
T 2pm9_A 44 DSSLELWSLLA----ADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL----------DNGSLELYSTNEANNAINSMARF 109 (416)
T ss_dssp CCCCEEEESSS----GGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE----------SSSCEEEECCSSTTSCCCEEEEC
T ss_pred CCeEEEEEccC----CCCCcEEEEEecCCceEEEEECCCCCeEEEEc----------cCCeEEEeecccccccccchhhc
Confidence 34699999988 6532 222233444688999999999998863 235677777766 2 23333
Q ss_pred cCCCCccccceeeeeEEecC-CcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhee
Q 004475 78 FESPDICLNAVFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (751)
..... .+..++|+|| ++.|+..+.+
T Consensus 110 ~~h~~-----~v~~~~~~~~~~~~l~s~~~d------------------------------------------------- 135 (416)
T 2pm9_A 110 SNHSS-----SVKTVKFNAKQDNVLASGGNN------------------------------------------------- 135 (416)
T ss_dssp CCSSS-----CCCEEEECSSSTTBEEEECSS-------------------------------------------------
T ss_pred cCCcc-----ceEEEEEcCCCCCEEEEEcCC-------------------------------------------------
Confidence 22222 3678999999 7777766332
Q ss_pred eEEEEEcC-CCC------c-eec---CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 157 AQLVLGSL-DGT------A-KDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 157 ~~l~~~~~-~G~------~-~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
..|.++++ +++ . ..+ ..+ ..+..++|+||+..++++... ...+.+||+.+++....
T Consensus 136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS------------SNFASIWDLKAKKEVIH 203 (416)
T ss_dssp SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS------------SSCEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC------------CCCEEEEECCCCCcceE
Confidence 35677777 443 1 111 223 667899999995444444322 34689999987654433
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-eeceeEE-
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS- 302 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~- 302 (751)
....... ......+..++|+|+|..+++... .++ ....|+++++... ......+. .....+.
T Consensus 204 ~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~-~d~--------~~~~i~~~d~~~~-~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 204 LSYTSPN------SGIKQQLSVVEWHPKNSTRVATAT-GSD--------NDPSILIWDLRNA-NTPLQTLNQGHQKGILS 267 (416)
T ss_dssp ECCCCCS------SCCCCCEEEEEECSSCTTEEEEEE-CCS--------SSCCCCEEETTST-TSCSBCCCSCCSSCEEE
T ss_pred Eeccccc------cccCCceEEEEECCCCCCEEEEEE-CCC--------CCceEEEEeCCCC-CCCcEEeecCccCceeE
Confidence 2221100 001234668999999977344433 111 1126888887521 12233343 4556677
Q ss_pred EEEec-CCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC-CEEEEee
Q 004475 303 VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAKI 370 (751)
Q Consensus 303 ~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG-~~l~~~~ 370 (751)
+.|+| +++.|+.... ...|.+.++.++ +...........+.. ++|+||| +.|+..+
T Consensus 268 ~~~s~~~~~~l~s~~~----dg~v~~wd~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGR----DNTVLLWNPESA--EQLSQFPARGNWCFK------TKFAPEAPDLFACAS 325 (416)
T ss_dssp EEECSSCSSCEEEEES----SSEEEEECSSSC--CEEEEEECSSSCCCC------EEECTTCTTEEEECC
T ss_pred EEeCCCCCCeEEEEeC----CCCEEEeeCCCC--ccceeecCCCCceEE------EEECCCCCCEEEEEe
Confidence 99999 8888877652 246777788774 222222222222333 8899999 6666655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=146.07 Aligned_cols=320 Identities=8% Similarity=-0.030 Sum_probs=187.5
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|++|++.+ ++..... ..........|+|||++||... ....|.++++.+++..........
T Consensus 77 d~~v~i~d~~~----~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~ 140 (420)
T 3vl1_A 77 DGHDFLFNTII----RDGSKML--KRADYTAVDTAKLQMRRFILGT----------TEGDIKVLDSNFNLQREIDQAHVS 140 (420)
T ss_dssp TTEEEEEECCS----EETTTTS--CSCCEEEEEEECSSSCEEEEEE----------TTSCEEEECTTSCEEEEETTSSSS
T ss_pred CCcEEEEEecc----cceeeEE--ecCCceEEEEEecCCCEEEEEE----------CCCCEEEEeCCCcceeeecccccC
Confidence 34789999987 6655443 2223355668999999999863 346788889888876665433221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|||+.|+..+.+ ..|.++|
T Consensus 141 ----~v~~~~~~~~~~~l~s~s~d-------------------------------------------------~~i~iwd 167 (420)
T 3vl1_A 141 ----EITKLKFFPSGEALISSSQD-------------------------------------------------MQLKIWS 167 (420)
T ss_dssp ----CEEEEEECTTSSEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----ccEEEEECCCCCEEEEEeCC-------------------------------------------------CeEEEEe
Confidence 47889999999988877442 4788888
Q ss_pred C-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccC-CCCCCCC-----
Q 004475 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIP----- 234 (751)
Q Consensus 164 ~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~----- 234 (751)
+ ++ ....+..+ ..+..++|+|||+.|+..+.+ ..+.+||+.+++....... .......
T Consensus 168 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp TTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred CCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 8 56 45556555 778899999999999876543 3588999986654433221 1100000
Q ss_pred ------CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-EEEe
Q 004475 235 ------VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-VSWC 306 (751)
Q Consensus 235 ------~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-~~~s 306 (751)
.........+..++|+|||+. |+... ..+.|.++++.. +.....+.. ....+. +.|+
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~------------~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGH------------VSGVITVHNVFS--KEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEE------------TTSCEEEEETTT--CCEEEEECCTTSSCEEEEEEC
T ss_pred ecCCcceeeecccCcccceEEcCCCCE-EEEEc------------CCCeEEEEECCC--CceeEEcccccCCCceeEEEe
Confidence 000111234567899999997 55543 235788888751 222222222 344566 9999
Q ss_pred cCCc-eEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 307 DDSL-ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 307 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
|+++ .|+.+. ....|.+.++.++......+.......+. ..+++||+.|+..+.+
T Consensus 300 ~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~l~s~~~d------------- 355 (420)
T 3vl1_A 300 GNNANYIYAGY----ENGMLAQWDLRSPECPVGEFLINEGTPIN-------NVYFAAGALFVSSGFD------------- 355 (420)
T ss_dssp SSCTTEEEEEE----TTSEEEEEETTCTTSCSEEEEESTTSCEE-------EEEEETTEEEEEETTT-------------
T ss_pred CCCCCEEEEEe----CCCeEEEEEcCCCcCchhhhhccCCCCce-------EEEeCCCCEEEEecCC-------------
Confidence 9999 565544 22467777877642212333322222222 3366788877666522
Q ss_pred CCCCCCCCceeEEEecCCCce-eEEeeccchhhhhceeeeecCCcceeeccCCC---EEEEEEecCCCCCeEEEEEcC
Q 004475 386 GFTPEGNIPFLDLFDINTGSK-ERIWESNREKYFETAVALVFGQGEEDINLNQL---KILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~l~~~~~~ 459 (751)
..|.+|++.+.+. ..+...... ............++|+||++ .++..... +.+.+++++
T Consensus 356 --------~~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~----g~~~~~~~~ 418 (420)
T 3vl1_A 356 --------TSIKLDIISDPESERPAIEFETP---TFLVSNDDAVSQFCYVSDDESNGEVLEVGKN----NFCALYNLS 418 (420)
T ss_dssp --------EEEEEEEECCTTCCSCEECTTSC---EEECCSSCCCCEEEEECCSSSSCEEEEEETT----TEEEEEESC
T ss_pred --------ccEEEEeccCCCCCccceeccCc---cEEccCCcceEEEEEccCCCCcceEEEEcCC----ceEEEEecc
Confidence 3678888765322 112111110 00011111223478999999 77766532 345555543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=142.94 Aligned_cols=293 Identities=13% Similarity=0.133 Sum_probs=164.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee--e-ccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--P-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~--~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.+...+|||||++||..+ ....|.++++++++.. . +..+.. ..+..++|||||++|+..+.+
T Consensus 18 ~v~~l~~sp~g~~las~~----------~D~~i~iw~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~g~~l~s~s~D- 82 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG----------GDRRIRIWGTEGDSWICKSVLSEGHQ----RTVRKVAWSPCGNYLASASFD- 82 (345)
T ss_dssp CEEEEEECTTSSCEEEEE----------TTSCEEEEEEETTEEEEEEEECSSCS----SCEEEEEECTTSSEEEEEETT-
T ss_pred cEEEEEECCCCCEEEEEc----------CCCeEEEEEcCCCcceeeeeeccccC----CcEEEEEECCCCCEEEEEECC-
Confidence 467899999999999864 2345666676666422 1 212221 147889999999999987543
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC---ceecCCC-ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~---~~~lt~~-~~~~~~~~S 183 (751)
..+.++++ .+. ...+..+ ..+..++|+
T Consensus 83 ------------------------------------------------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s 114 (345)
T 3fm0_A 83 ------------------------------------------------ATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114 (345)
T ss_dssp ------------------------------------------------SCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred ------------------------------------------------CcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence 23444444 232 3344444 678899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|||++|+..+.+ ..+.+||++++.. ..+.. +......+..+.|+|||+. |+..+
T Consensus 115 p~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~----------~~~h~~~v~~~~~~p~~~~-l~s~s- 169 (345)
T 3fm0_A 115 PSGNLLATCSRD-------------KSVWVWEVDEEDEYECVSV----------LNSHTQDVKHVVWHPSQEL-LASAS- 169 (345)
T ss_dssp TTSSEEEEEETT-------------SCEEEEEECTTSCEEEEEE----------ECCCCSCEEEEEECSSSSC-EEEEE-
T ss_pred CCCCEEEEEECC-------------CeEEEEECCCCCCeEEEEE----------ecCcCCCeEEEEECCCCCE-EEEEe-
Confidence 999998876544 3588999875432 11111 1112233568999999998 55544
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCc---eEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc-
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP- 337 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~- 337 (751)
..+.+.+++.. .... ..+......+. ++|+|||+.|+..+. .+.-.||.....+.....
T Consensus 170 -----------~d~~i~~w~~~---~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~--D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 170 -----------YDDTVKLYREE---EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD--DRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp -----------TTSCEEEEEEE---TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEEECTTCTTCCC
T ss_pred -----------CCCcEEEEEec---CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC--CCeEEEeccccCCCCccce
Confidence 23467777664 2221 22334455667 999999999887662 344567765433210000
Q ss_pred --------eeeee---cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 338 --------RVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 338 --------~~l~~---~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
+.+.. .....++. ++|+|++..|+..+.+ ..+.+|+..++..
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~------v~~~~~~~~l~s~~~d---------------------~~i~vw~~~~~~~ 286 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYD------IAWCQLTGALATACGD---------------------DAIRVFQEDPNSD 286 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEE------EEECTTTCCEEEEETT---------------------SCEEEEEECTTSC
T ss_pred eeccCCccceeEEecCCCCCcEEE------EEEecCCCEEEEEeCC---------------------CeEEEEEeCCCCC
Confidence 00100 01111222 7899999998887732 2566666654321
Q ss_pred --eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 407 --ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 407 --~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
......... . ...-......++|+|++..++.+.... +.+.++++.+++
T Consensus 287 ~~~~~~~~~~~-~---~~~h~~~V~~v~~~p~~~~~laS~s~D---g~v~~W~~~~~~ 337 (345)
T 3fm0_A 287 PQQPTFSLTAH-L---HQAHSQDVNCVAWNPKEPGLLASCSDD---GEVAFWKYQRPE 337 (345)
T ss_dssp TTSCCEEEEEE-E---TTSSSSCEEEEEECSSSTTEEEEEETT---SCEEEEEECC--
T ss_pred cceeeEEEEee-e---cccccCcEeEeEEeCCCceEEEEcCCC---CcEEEEEecCCC
Confidence 000000000 0 000011122368999987666665443 347777776544
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=144.18 Aligned_cols=205 Identities=11% Similarity=0.105 Sum_probs=121.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|||||++|++.+... ...|.+||+.+++......+. ..+..++|||||+
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~-----------d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~ 189 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKV-----------PAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGK 189 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCS-----------SCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSS
T ss_pred cCEEEEEEcCCCCEEEEEECCC-----------CCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCc
Confidence 3456789999999998865432 356889999887654332221 2356899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPG 331 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 331 (751)
. ++..+ .+.+.+++... +....... .....+. +.|+|||+.++..+........++..+..
T Consensus 190 ~-l~s~s-------------~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 190 V-VAYIT-------------GSSLEVISTVT--GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp E-EEEEC-------------SSCEEEEETTT--CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred e-EEecc-------------ceeEEEEEecc--CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 8 55543 12344554421 22221111 2344566 89999999998776443333456666665
Q ss_pred CCCCcceee--eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 332 SKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 332 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
......... .......+.. ++|||||++|+..+.+ ..|++||+.+++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~------~~~Spdg~~lasgs~D---------------------~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITS------MDVDMKGELAVLASND---------------------NSIALVKLKDLSMSKI 306 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEE------EEECTTSCEEEEEETT---------------------SCEEEEETTTTEEEEE
T ss_pred cceecceeeeeecCCCCCeEe------EEECCCCCceEEEcCC---------------------CEEEEEECCCCcEEEE
Confidence 531111111 1112222222 7899999999988833 2689999998876443
Q ss_pred eeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 410 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
+..... ..+.. ++|||||+.|+-. +.. ..|.++++..
T Consensus 307 ~~~gH~---~~V~~-------v~fSpdg~~laS~-S~D---~tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQAHS---FAITE-------VTISPDSTYVASV-SAA---NTIHIIKLPL 343 (365)
T ss_dssp ETTSSS---SCEEE-------EEECTTSCEEEEE-ETT---SEEEEEECCT
T ss_pred ecCccc---CCEEE-------EEECCCCCEEEEE-eCC---CeEEEEEcCC
Confidence 211110 01222 5899999977643 332 3477777654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-13 Score=142.73 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=149.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCc-------------cccceeeeeEEecC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI-------------CLNAVFGSFVWVNN 97 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~-------------~~~~~~~~~~wspD 97 (751)
.+...+|||||++||... + ..+.++++.+|+... +...... .....+..++||||
T Consensus 66 ~V~~v~fspdg~~la~g~---------~--~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC---------N--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CCCEEEECTTSSEEEEEC---------B--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred EEEEEEECCCCCEEEEEc---------C--CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 578899999999999842 2 356666777776433 2211100 00012568899999
Q ss_pred CcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC-
Q 004475 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP- 174 (751)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~- 174 (751)
|++|+..+.+ ..|.++|+ +++. ..+..+
T Consensus 135 g~~l~s~~~d-------------------------------------------------~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGAED-------------------------------------------------RLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEETT-------------------------------------------------SCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEcCC-------------------------------------------------CeEEEEECCCCcEEEEEccCC
Confidence 9999887542 46777888 5543 344444
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec-CC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG 253 (751)
..+..++|+|||++|+..+.+ ..+.+||+.+++....... ...+..++|+| ||
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSI-------------EDGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEEC-------------SSCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEEc-------------CCCcEEEEEECCCC
Confidence 778899999999998776543 3688999987764432221 12355789999 78
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-------EeeceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
+. |+..+ ..+.|.++++.. +.....+ ......+. +.|+|||+.|+..+. . ..|
T Consensus 220 ~~-l~~~s------------~d~~v~iwd~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--d--~~v 280 (393)
T 1erj_A 220 KY-IAAGS------------LDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--D--RSV 280 (393)
T ss_dssp CE-EEEEE------------TTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET--T--SEE
T ss_pred CE-EEEEc------------CCCcEEEEECCC--CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC--C--CEE
Confidence 76 55543 235677777741 1112222 12344566 999999998876552 2 344
Q ss_pred EEecCCCCCC----------cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCce
Q 004475 326 WLVCPGSKDV----------APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 395 (751)
Q Consensus 326 ~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (751)
.+.++.+... ............+.. ++|+|||++|+..+.+ ..
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------~~~~~~~~~l~sgs~D---------------------~~ 333 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------RG 333 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------SE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEE------EEECCCCCEEEEEeCC---------------------Ce
Confidence 4455443200 000111111111222 7799999998877732 27
Q ss_pred eEEEecCCCceeEEee
Q 004475 396 LDLFDINTGSKERIWE 411 (751)
Q Consensus 396 l~~~d~~~g~~~~l~~ 411 (751)
|++||+.+++......
T Consensus 334 v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEEC
Confidence 8899999887655443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-14 Score=159.33 Aligned_cols=263 Identities=11% Similarity=0.043 Sum_probs=160.7
Q ss_pred cccceeec-CCCCeEEEEEeecccccccCCceeEEEEEcCCC-CeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~S-PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
....++|| |||++|||+.... +....+||++++++| +. ++.. +......++|||||+.|+|++.+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~-----G~~~~~l~v~dl~~g~~~--l~~~----~~~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS-----GNEVYTIEFKRISDPSQT--IADK----VSGTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS-----SSSCEEEEEEETTCTTCC--CCCC----EEEECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCC-----CCceEEEEEEECCCCCEe--CCcc----ccCceeeEEEecCCCEEEEEEECCC
Confidence 35789999 9999999987531 133467999999998 62 2211 1112357899999999999965321
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--eec---CCCceEEeeeeC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDF---GTPAVYTAVEPS 183 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--~~l---t~~~~~~~~~~S 183 (751)
. ...+||++++ +++. +.+ ........+.||
T Consensus 244 ~--------------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 244 L--------------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp C--------------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred C--------------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 0 1158999999 4432 333 222445688999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--ee--eeeccCCCCCCCCCccCCccCCCceeeeecC---CCce
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LV--RELCDLPPAEDIPVCYNSVREGMRSISWRAD---KPST 256 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd---G~~~ 256 (751)
|||++|++.+... ...+||++|++++ +. +.+.... ....|+|+ |+.
T Consensus 280 pDg~~l~~~~~~~----------~~~~l~~~d~~~~~~~~~~~~l~~~~----------------~~~~~s~~~~~g~~- 332 (751)
T 2xe4_A 280 ADTNTLCIGSQSP----------ETAEVHLLDLRKGNAHNTLEIVRPRE----------------KGVRYDVQMHGTSH- 332 (751)
T ss_dssp TTSSEEEEEEECS----------SCEEEEEEESSSCTTCCCEEESSCCC----------------TTCCEEEEEETTTE-
T ss_pred CCCCEEEEEecCC----------CCceEEEEECCCCCCCceeEEeecCC----------------CCceEEEeeeeCCE-
Confidence 9999999987542 1568999999865 33 4443221 12356666 888
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeeceeEE-EEEecCCceEEEeeeecccceeEEEecC----
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP---- 330 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~---- 330 (751)
|++.+..+ ...+.+|++++++. ++..+. +........ ..|+++++.|++.... ....+|+++++
T Consensus 333 l~~~t~~~-------~a~~~~L~~~d~~~--~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 333 LVILTNEG-------GAVNHKLLIAPRGQ--PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMADSQD 402 (751)
T ss_dssp EEEEECTT-------TCTTCEEEEEETTS--TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCTTT
T ss_pred EEEEeCCC-------CCCCcEEEEEcCCC--cccceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEeccccc
Confidence 67765322 01335899998851 133344 443333334 4566678888887754 34578999986
Q ss_pred ---CCCCCc-ceeeeecccccccCCCCCCCeee----CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 331 ---GSKDVA-PRVLFDRVFENVYSDPGSPMMTR----TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 331 ---~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~----spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
+++ . .+.+.......... +.+ ++|++.|+|.... ......++++|+.
T Consensus 403 ~~~~~g--~~~~~l~l~~~~~~~~------~~~~~~~~~~~~~l~~~~ss-----------------~~~P~~~~~~d~~ 457 (751)
T 2xe4_A 403 GVFKAG--TGLREVVMEEPIFTVH------LVESQMLEYEEPTFRMEYSS-----------------LATPNTWFDVSPQ 457 (751)
T ss_dssp SCCCTT--TCCEECCCCCSSCEEE------ECGGGCCCTTCSCEEEEEEE-----------------TTEEEEEEEECTT
T ss_pred ccccCC--ccceEECCCCceeEEE------eccCcccCCCCCEEEEEEeC-----------------CCCCCEEEEEECC
Confidence 442 3 34442111110001 222 5688877776632 1234478899998
Q ss_pred CCceeEEee
Q 004475 403 TGSKERIWE 411 (751)
Q Consensus 403 ~g~~~~l~~ 411 (751)
+++.+.+..
T Consensus 458 ~~~~~~l~~ 466 (751)
T 2xe4_A 458 DHSRTAVKV 466 (751)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEec
Confidence 888776654
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=154.19 Aligned_cols=180 Identities=17% Similarity=0.101 Sum_probs=117.6
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a 615 (751)
.+...|+++||.|++ .+.+|+|.+.... ......++|+.+++++++++ .+..+++++||||||.+|
T Consensus 84 ~~~~~l~~~g~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a 158 (354)
T 2rau_A 84 SIVLYLARNGFNVYT---IDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAA 158 (354)
T ss_dssp CHHHHHHHTTEEEEE---EECGGGGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHH
T ss_pred hHHHHHHhCCCEEEE---ecCCCCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHH
Confidence 346678889999999 5556676654321 22467788999999999876 244789999999999999
Q ss_pred HHHHHhC-CCceeEEEEccCCCCC--CCCcc-----------------------Ccc---------c----------ccc
Q 004475 616 AHLLAHA-PHLFCCGIARSGSYNK--TLTPF-----------------------GFQ---------T----------EFR 650 (751)
Q Consensus 616 ~~~a~~~-p~~~~~~v~~~~~~d~--~~~~~-----------------------~~~---------~----------~~~ 650 (751)
+.++.++ |++++++|+.++.... ....+ .+. . ...
T Consensus 159 ~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (354)
T 2rau_A 159 LNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSI 238 (354)
T ss_dssp HHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSH
T ss_pred HHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccccCCCchhhhHHHHHhccccccCccccchhhH
Confidence 9999998 9999999998653211 00000 000 0 000
Q ss_pred cchhhHHHH----------------------------------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 651 TLWEATNVY----------------------------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 651 ~~~~~~~~~----------------------------------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
..|-....+ ...+....+.++++|+|++||++|.++| ..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p---~~~~-- 313 (354)
T 2rau_A 239 SDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLKFDYEGILVPTIAFVSERFGIQI---FDSK-- 313 (354)
T ss_dssp HHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCCCCCTTCCCCEEEEEETTTHHHH---BCGG--
T ss_pred HHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccccccccCCCCEEEEecCCCCCCc---cchh--
Confidence 000000000 0112233456889999999999998764 2221
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCc--cccHHHHHHHHHHHHHHH
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAA--RENVMHVIWETDRWLQKY 739 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~fl~~~ 739 (751)
.+ ...++++++++++|.... .+...++.+.+.+||+++
T Consensus 314 --~l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 314 --IL---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp --GS---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred --hh---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 12 245699999999998643 234578899999999864
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=146.49 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=78.9
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
..+...+|..+....+-+++ .|.||++||++... .. ......+..+||.|++ +
T Consensus 14 ~~~~~~~g~~l~y~~~G~~~--------g~pvvllHG~~~~~-------------~~---~~~~~~~~~~~~~vi~---~ 66 (313)
T 1azw_A 14 GSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGGG-------------CN---DKMRRFHDPAKYRIVL---F 66 (313)
T ss_dssp EEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTTC-------------CC---GGGGGGSCTTTEEEEE---E
T ss_pred ceEEcCCCCEEEEEecCCCC--------CCeEEEECCCCCcc-------------cc---HHHHHhcCcCcceEEE---E
Confidence 33444467777666554321 35689999964110 00 0111122357999999 6
Q ss_pred CCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 564 PIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 564 ~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
|.+|+|.+.... .......+|+.++++.+ ..+++.|+||||||.+|+.+|.++|++++++|+.++.
T Consensus 67 D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 67 DQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp CCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCcCCCCCcccccccHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 677888875421 23455666666665544 2358999999999999999999999999999998764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-14 Score=143.81 Aligned_cols=275 Identities=11% Similarity=0.064 Sum_probs=166.1
Q ss_pred CCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.....|+++|+.+++........... .....++|||||+.|++....
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~------------------------------- 54 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVNK------------------------------- 54 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEETT-------------------------------
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCCCCEEEEEeCC-------------------------------
Confidence 34578999999988765443322200 014678999999988877421
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCc------eEEeeeeCCCCceEEEEEecCCcccccccCC---C
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCAR---F 207 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~------~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~---~ 207 (751)
...|+++|+ +|+.. .+.... ....++|||||++|++........ ... .
T Consensus 55 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~----~~~~~~~ 113 (337)
T 1pby_B 55 -----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE----LTHFEVQ 113 (337)
T ss_dssp -----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC----SSCEEEC
T ss_pred -----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccc----ccccccc
Confidence 147888998 66543 333222 455789999999999875321000 000 1
Q ss_pred ceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC
Q 004475 208 SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (751)
Q Consensus 208 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (751)
...|++||+++++........ ..+..+.|+|||++ |++++ +.|++++++
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~~--------------~~i~~~d~~--- 162 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAP-------------RQITMLAWARDGSK-LYGLG--------------RDLHVMDPE--- 162 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSC-EEEES--------------SSEEEEETT---
T ss_pred CceEEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCE-EEEeC--------------CeEEEEECC---
Confidence 357999999877654332211 12447899999998 66642 468888875
Q ss_pred CCCceEeEeeceeEE-EEEecCCceEEEeeeecc--------------------cceeEEEecCCCCCCcceeeeecccc
Q 004475 288 GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT--------------------SQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 288 ~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~--------------------~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
++............. ..|+|||+.|++...... ....|+++++.++ +...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~ 240 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG--EMAMREVRIMD 240 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--CEEEEEEEECS
T ss_pred CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC--CceEeecCCCC
Confidence 332222222111112 578999998765542111 0115788898875 22222111111
Q ss_pred -cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeee
Q 004475 347 -NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 425 (751)
Q Consensus 347 -~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 425 (751)
... .++|+|||++|++.. ..|++||+++++.........
T Consensus 241 ~~~~------~~~~s~dg~~l~~~~-----------------------~~v~~~d~~~~~~~~~~~~~~----------- 280 (337)
T 1pby_B 241 VFYF------STAVNPAKTRAFGAY-----------------------NVLESFDLEKNASIKRVPLPH----------- 280 (337)
T ss_dssp SCEE------EEEECTTSSEEEEEE-----------------------SEEEEEETTTTEEEEEEECSS-----------
T ss_pred Ccee------eEEECCCCCEEEEeC-----------------------CeEEEEECCCCcCcceecCCC-----------
Confidence 111 178999999887762 168999998887654433221
Q ss_pred cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 426 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 426 ~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
....++|+|||+.|++. . ....|.++|+.+++...
T Consensus 281 -~~~~~~~s~dg~~l~~~-~---~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 281 -SYYSVNVSTDGSTVWLG-G---ALGDLAAYDAETLEKKG 315 (337)
T ss_dssp -CCCEEEECTTSCEEEEE-S---BSSEEEEEETTTCCEEE
T ss_pred -ceeeEEECCCCCEEEEE-c---CCCcEEEEECcCCcEEE
Confidence 12346899999988775 2 24679999999887554
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=145.38 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=133.8
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
..+.+...-|.+ ..|.||++||.+. +...|. .+...|+++||.|++ +|.+|+|.+
T Consensus 33 ~~l~y~~~G~~~-------~g~~vvllHG~~~-----------~~~~w~----~~~~~L~~~g~rvia---~Dl~G~G~S 87 (297)
T 2xt0_A 33 LRMHYVDEGPRD-------AEHTFLCLHGEPS-----------WSFLYR----KMLPVFTAAGGRVVA---PDLFGFGRS 87 (297)
T ss_dssp CCEEEEEESCTT-------CSCEEEEECCTTC-----------CGGGGT----TTHHHHHHTTCEEEE---ECCTTSTTS
T ss_pred eEEEEEEccCCC-------CCCeEEEECCCCC-----------cceeHH----HHHHHHHhCCcEEEE---eCCCCCCCC
Confidence 677777665421 0367999999641 111221 345677888999999 677788887
Q ss_pred CCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-ccC--
Q 004475 572 LPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PFG-- 644 (751)
Q Consensus 572 ~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~~-- 644 (751)
.... .......+|+.++++.+. .+++.|+||||||.+|+.+|.++|++++++|+.++....... ...
T Consensus 88 ~~~~~~~~~~~~~~a~dl~~ll~~l~------~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 161 (297)
T 2xt0_A 88 DKPTDDAVYTFGFHRRSLLAFLDALQ------LERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFE 161 (297)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHHT------CCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhC------CCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHH
Confidence 5432 235667777777777662 368999999999999999999999999999998875421110 000
Q ss_pred -cc---c-cc----------c-cch--hhHHHHH----------------hcC--------------cccccC-CCCCCE
Q 004475 645 -FQ---T-EF----------R-TLW--EATNVYI----------------EMS--------------PITHAN-KIKKPI 675 (751)
Q Consensus 645 -~~---~-~~----------~-~~~--~~~~~~~----------------~~~--------------~~~~~~-~~~~P~ 675 (751)
+. . .. . ... ...+.+. ... ....+. ++++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 241 (297)
T 2xt0_A 162 SWRDFVANSPDLDVGKLMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPT 241 (297)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHhhcccccchhHHHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCe
Confidence 00 0 00 0 000 0000000 000 011345 889999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
|+++|++|..+| ..++++.+.+... ......++++||... . ..+.+.+.+.+||.
T Consensus 242 Lvi~G~~D~~~~---~~~~~~~~~~p~~--~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 242 FMAVGAQDPVLG---PEVMGMLRQAIRG--CPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp EEEEETTCSSSS---HHHHHHHHHHSTT--CCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred EEEEeCCCcccC---hHHHHHHHhCCCC--eeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 999999999875 5566777666543 333444789999987 4 67888899999974
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=149.19 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=133.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|.++..... + . .|.||++||.+.+. .....|. .....|+ ++|.|++ ++.+|+
T Consensus 23 ~~g~~l~y~~~---g-----~--g~~vvllHG~~~~~-----------~~~~~~~-~~~~~L~-~~~~vi~---~Dl~G~ 76 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----K--GQPVILIHGGGAGA-----------ESEGNWR-NVIPILA-RHYRVIA---MDMLGF 76 (296)
T ss_dssp ETTEEEEEEEE---C-----C--SSEEEEECCCSTTC-----------CHHHHHT-TTHHHHT-TTSEEEE---ECCTTS
T ss_pred ECCEEEEEEec---C-----C--CCeEEEECCCCCCc-----------chHHHHH-HHHHHHh-hcCEEEE---ECCCCC
Confidence 36666665443 1 1 36799999964211 0111111 1233444 4599999 666788
Q ss_pred CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc----
Q 004475 569 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---- 642 (751)
Q Consensus 569 g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---- 642 (751)
|.+... ........+|+.+.++.+ . + ..++.|+||||||.+|+.+|.++|++++++|++++........
T Consensus 77 G~S~~~~~~~~~~~~~~dl~~~l~~l---~-~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~ 151 (296)
T 1j1i_A 77 GKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLR 151 (296)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc---C-C-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHH
Confidence 877521 123455566665555443 2 2 1589999999999999999999999999999988754211000
Q ss_pred --cCccc--------------ccc--------cchhh---H---HHHHh-----------cCcccccCCCCCCEEEEEcC
Q 004475 643 --FGFQT--------------EFR--------TLWEA---T---NVYIE-----------MSPITHANKIKKPILIIHGE 681 (751)
Q Consensus 643 --~~~~~--------------~~~--------~~~~~---~---~~~~~-----------~~~~~~~~~~~~P~li~~G~ 681 (751)
+.... ... ..+.. + ..+.. ......+.++++|+|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~ 231 (296)
T 1j1i_A 152 PIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGK 231 (296)
T ss_dssp ----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEET
T ss_pred HHhcccCCchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEEC
Confidence 00000 000 00000 0 00000 01122457889999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcC
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
+|..+| +..+..+.+.+. ..+++++++++|... .+..+.+.+.+.+||.+.+.+
T Consensus 232 ~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~~ 285 (296)
T 1j1i_A 232 DDKVVP--VETAYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVDI 285 (296)
T ss_dssp TCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC---
T ss_pred CCcccC--HHHHHHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCCc
Confidence 999998 888877776553 468999999999876 566788999999999988753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=140.09 Aligned_cols=289 Identities=9% Similarity=0.005 Sum_probs=155.5
Q ss_pred ceeEEEEEcC-CCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 61 KLRVWIADAE-TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 61 ~~~l~i~~~~-~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
...|++++++ +++.+.+..... ...+..++|||||++|++.....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~------------------------------- 59 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDV---PGQVQPMVVSPDKRYLYVGVRPE------------------------------- 59 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEC---SSCCCCEEECTTSSEEEEEETTT-------------------------------
T ss_pred CCeEEEEEECCCCcEEEeeeEec---CCCCceEEECCCCCEEEEeecCC-------------------------------
Confidence 3567777764 444333321111 01256789999999998874421
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCCceec---CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l---t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
..-.+|.++. +|+.+.+ ........++|+|||++|++.... ...+++|+
T Consensus 60 ---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~i~~~d 112 (343)
T 1ri6_A 60 ---------------FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN------------AGNVSVTR 112 (343)
T ss_dssp ---------------TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT------------TTEEEEEE
T ss_pred ---------------CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC------------CCeEEEEE
Confidence 0024455554 4544333 222456688999999999887543 23578888
Q ss_pred CCCce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe
Q 004475 216 TDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (751)
Q Consensus 216 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 294 (751)
++.+. .+.+..... ...+..++|+|||+. ++.+.. ..+.|++++++. .+....+
T Consensus 113 ~~~~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~-l~~~~~-----------~~~~v~~~d~~~--~~~~~~~ 167 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEG-----------LDGCHSANISPDNRT-LWVPAL-----------KQDRICLFTVSD--DGHLVAQ 167 (343)
T ss_dssp EETTEEEEEEEEECC-----------CTTBCCCEECTTSSE-EEEEEG-----------GGTEEEEEEECT--TSCEEEE
T ss_pred CCCCccccccccccC-----------CCCceEEEECCCCCE-EEEecC-----------CCCEEEEEEecC--CCceeee
Confidence 73221 111111111 122457899999998 555431 125788888751 1333222
Q ss_pred E-----e-eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-cccccC-CCCCCCeeeCCCCCE
Q 004475 295 H-----K-LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYS-DPGSPMMTRTSTGTN 365 (751)
Q Consensus 295 ~-----~-~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~~~spDG~~ 365 (751)
. . ...... +.|+|||++|++.... ...|.+++++...+..+.+.... ...... ......++|+|||++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~---~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCC---CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 1 1 122344 8899999988776522 23555555533112222221111 000000 000012789999998
Q ss_pred EEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC--CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 366 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN--TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 366 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
|++... ....|.+|++. +++.+.+..... ......++|+|||+.|++.
T Consensus 245 l~v~~~--------------------~~~~i~v~d~~~~~~~~~~~~~~~~----------~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 245 LYACDR--------------------TASLITVFSVSEDGSVLSKEGFQPT----------ETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEEET--------------------TTTEEEEEEECTTSCCEEEEEEEEC----------SSSCCCEEECTTSSEEEEE
T ss_pred EEEEec--------------------CCCEEEEEEEcCCCCceEEeeeecC----------CCccceEEECCCCCEEEEe
Confidence 876651 12367788876 554444422211 0113347899999988776
Q ss_pred EecCCCCCeEEEEEcCCCceeEeecC
Q 004475 444 KESKTEITQYHILSWPLKKSSQITNF 469 (751)
Q Consensus 444 ~~~~~~~~~l~~~~~~~g~~~~lt~~ 469 (751)
.. ....-.+|.+|..+|+.+++...
T Consensus 295 ~~-~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 295 GQ-KSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp CT-TTCEEEEEEEETTTTEEEEEEEE
T ss_pred cC-CCCeEEEEEEcCCCceeeEcccc
Confidence 42 22334466678778877766644
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-14 Score=142.74 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=132.7
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.+...+...+|..+.+..+.+.+ +.|.||++||.+. +...| ..+...|+ +||.|++
T Consensus 5 ~~~~~~~~~~g~~l~~~~~g~~~-------~~~~vvllHG~~~-----------~~~~~----~~~~~~L~-~~~~vi~- 60 (285)
T 3bwx_A 5 YEDRYWTSSDGLRLHFRAYEGDI-------SRPPVLCLPGLTR-----------NARDF----EDLATRLA-GDWRVLC- 60 (285)
T ss_dssp SEEEEEECTTSCEEEEEEECBCT-------TSCCEEEECCTTC-----------CGGGG----HHHHHHHB-BTBCEEE-
T ss_pred cccCeeecCCCceEEEEEcCCCC-------CCCcEEEECCCCc-----------chhhH----HHHHHHhh-cCCEEEe-
Confidence 35566677788888888775432 1367999999641 11111 12333444 4999999
Q ss_pred CCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC-
Q 004475 561 PSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS- 635 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~- 635 (751)
++.+|+|.+.... .......+|+.++++.+ ..+++.|+||||||.+|+.+|.++|++++++|+.++.
T Consensus 61 --~Dl~G~G~S~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 132 (285)
T 3bwx_A 61 --PEMRGRGDSDYAKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGP 132 (285)
T ss_dssp --ECCTTBTTSCCCSSGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred --ecCCCCCCCCCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCc
Confidence 6677888775422 23456677777777766 2357999999999999999999999999999986532
Q ss_pred -CCCC-----------CCcc-Cc---------------ccccccchhhH-H-HHHhc---------Cc-----c------
Q 004475 636 -YNKT-----------LTPF-GF---------------QTEFRTLWEAT-N-VYIEM---------SP-----I------ 665 (751)
Q Consensus 636 -~d~~-----------~~~~-~~---------------~~~~~~~~~~~-~-~~~~~---------~~-----~------ 665 (751)
.... .... .+ .......|... . .+... .+ +
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (285)
T 3bwx_A 133 EVSPEGLERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGA 212 (285)
T ss_dssp SCCHHHHHHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTC
T ss_pred ccCcchhHHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhc
Confidence 1100 0000 00 00000000000 0 00000 00 0
Q ss_pred -------cccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 666 -------THANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 666 -------~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+.++ ++|+|+++|++|..+| +..++.+. +. ..++++++++++|... .+.... +..+.+||.
T Consensus 213 ~~~~~~~~~~~~~~~~P~lii~G~~D~~~~--~~~~~~~~----~~-~~~~~~~i~~~gH~~~-~e~p~~-~~~i~~fl~ 283 (285)
T 3bwx_A 213 TPQVDMWPLFDALATRPLLVLRGETSDILS--AQTAAKMA----SR-PGVELVTLPRIGHAPT-LDEPES-IAAIGRLLE 283 (285)
T ss_dssp CCSSCCHHHHHHHTTSCEEEEEETTCSSSC--HHHHHHHH----TS-TTEEEEEETTCCSCCC-SCSHHH-HHHHHHHHT
T ss_pred cccchhhHHHHHccCCCeEEEEeCCCCccC--HHHHHHHH----hC-CCcEEEEeCCCCccch-hhCchH-HHHHHHHHH
Confidence 001223 7999999999999998 66655443 44 5689999999999876 344444 467888885
Q ss_pred H
Q 004475 738 K 738 (751)
Q Consensus 738 ~ 738 (751)
+
T Consensus 284 ~ 284 (285)
T 3bwx_A 284 R 284 (285)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=152.29 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=89.9
Q ss_pred CceEEEEEEcCC--C--ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC
Q 004475 479 LQKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554 (751)
Q Consensus 479 ~~~e~i~~~~~~--~--~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 554 (751)
+...++.+.+.+ + ..+.++++.|.+..+ .+++|+||++||++.......... .............|+++|
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~--~~~~P~vv~~HG~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~G 117 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERC--SGPYPLLGWGHPTEALRAQEQAKE----IRDAKGDDPLVTRLASQG 117 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTC--CSCEEEEEEECCCCCBTTCCHHHH----HHHTTTCSHHHHTTGGGT
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCC--CCCCcEEEEeCCCcCCCCcccccc----cccccchHHHHHHHHHCC
Confidence 456677776654 3 358999999976432 346899999999753211000000 000111234566788999
Q ss_pred eEEEEcCCCCCCCCCCCCCC-chh--H---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHH-hCC---
Q 004475 555 FAVLAGPSIPIIGEGDKLPN-DRF--V---EQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLA-HAP--- 623 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~-~~~--~---~~~~~d~~~~v~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~-~~p--- 623 (751)
|+|++ .+++|+|.+... ..+ . ...+.|..+++..+.++ +..++++|+++||||||++|+.++. ..+
T Consensus 118 ~~V~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~ 194 (397)
T 3h2g_A 118 YVVVG---SDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLS 194 (397)
T ss_dssp CEEEE---ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCT
T ss_pred CEEEE---ecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcC
Confidence 99999 455566665321 111 1 12234444555444443 4445679999999999999988873 222
Q ss_pred -C-ceeEEEEccCCCC
Q 004475 624 -H-LFCCGIARSGSYN 637 (751)
Q Consensus 624 -~-~~~~~v~~~~~~d 637 (751)
+ .+.++++.++.++
T Consensus 195 ~~~~~~~~~~~~~~~~ 210 (397)
T 3h2g_A 195 KEFHLVASAPISGPYA 210 (397)
T ss_dssp TTSEEEEEEEESCCSS
T ss_pred cCcceEEEeccccccc
Confidence 1 5778887777655
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=147.59 Aligned_cols=210 Identities=14% Similarity=0.070 Sum_probs=126.7
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..+|..+.....- ..|+||++||.+. +...|. .+...|.+ ||.|++ ++.+|
T Consensus 19 ~~~g~~l~~~~~g----------~~~~vv~lHG~~~-----------~~~~~~----~~~~~l~~-~~~v~~---~D~~G 69 (306)
T 3r40_A 19 NTSSGRIFARVGG----------DGPPLLLLHGFPQ-----------THVMWH----RVAPKLAE-RFKVIV---ADLPG 69 (306)
T ss_dssp CCTTCCEEEEEEE----------CSSEEEEECCTTC-----------CGGGGG----GTHHHHHT-TSEEEE---ECCTT
T ss_pred EeCCEEEEEEEcC----------CCCeEEEECCCCC-----------CHHHHH----HHHHHhcc-CCeEEE---eCCCC
Confidence 3467777766643 1478999999742 112222 33445555 999999 56667
Q ss_pred CCCCCCCc-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC-
Q 004475 568 EGDKLPND-------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT- 639 (751)
Q Consensus 568 ~g~~~~~~-------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~- 639 (751)
+|.+.... ....+..+|+.++++.+ +.++++++||||||.+|+.+|.++|++++++|++++.....
T Consensus 70 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 143 (306)
T 3r40_A 70 YGWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEY 143 (306)
T ss_dssp STTSCCCCCCTTCGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHH
T ss_pred CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHh------CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccc
Confidence 77764432 23455666666666554 33589999999999999999999999999999999742100
Q ss_pred --------------------CCc---------------------------cCcccccc----cchhhH-------HHHHh
Q 004475 640 --------------------LTP---------------------------FGFQTEFR----TLWEAT-------NVYIE 661 (751)
Q Consensus 640 --------------------~~~---------------------------~~~~~~~~----~~~~~~-------~~~~~ 661 (751)
... ........ ..+..+ ..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T 3r40_A 144 WQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRA 223 (306)
T ss_dssp HHHCSHHHHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHh
Confidence 000 00000000 000000 00000
Q ss_pred c---------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHH
Q 004475 662 M---------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWET 732 (751)
Q Consensus 662 ~---------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 732 (751)
. .....+.++++|+|+++|++|.++| .....+..+.+. ..++++++ +++|... .+..+++.+.+
T Consensus 224 ~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~-~~gH~~~-~e~p~~~~~~i 296 (306)
T 3r40_A 224 GAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQS--AATPLDVWRKWA---SDVQGAPI-ESGHFLP-EEAPDQTAEAL 296 (306)
T ss_dssp HHTHHHHHHHHHHHHTCCBCSCEEEEEETTCC--------CHHHHHHHB---SSEEEEEE-SSCSCHH-HHSHHHHHHHH
T ss_pred cccccchhhhhhhhhccCCCcceEEEEecCCcccC--chhHHHHHHhhc---CCCeEEEe-cCCcCch-hhChHHHHHHH
Confidence 0 0001347889999999999999987 555555554432 35677888 6799865 56677888999
Q ss_pred HHHHHHH
Q 004475 733 DRWLQKY 739 (751)
Q Consensus 733 ~~fl~~~ 739 (751)
.+||++.
T Consensus 297 ~~fl~~~ 303 (306)
T 3r40_A 297 VRFFSAA 303 (306)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-13 Score=135.94 Aligned_cols=245 Identities=12% Similarity=0.113 Sum_probs=155.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||... ..+.|.++++.+++..+....... .+..++|+|||+.|+..+.+
T Consensus 15 ~V~~~~fsp~~~~l~s~~----------~dg~v~lWd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~s~d---- 76 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTL----------YSGRVELWNYETQVEVRSIQVTET----PVRAGKFIARKNWIIVGSDD---- 76 (304)
T ss_dssp CEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEEECCSS----CEEEEEEEGGGTEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEc----------CCCcEEEEECCCCceeEEeeccCC----cEEEEEEeCCCCEEEEECCC----
Confidence 588999999999998863 346788889888764333222221 36788999999999887543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|.++|+ +|+ ...+..+ ..+..++|+||+++
T Consensus 77 ---------------------------------------------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 77 ---------------------------------------------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp ---------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred ---------------------------------------------CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE
Confidence 46788888 663 4455545 77889999999998
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+..+.+ ..+.+||+.++ ...+.. ......+..++|+|++...++..+
T Consensus 112 l~sgs~D-------------~~v~lWd~~~~~~~~~~~------------~~h~~~v~~v~~~p~~~~~l~sgs------ 160 (304)
T 2ynn_A 112 VLSGSDD-------------LTVKLWNWENNWALEQTF------------EGHEHFVMCVAFNPKDPSTFASGC------ 160 (304)
T ss_dssp EEEEETT-------------SCEEEEEGGGTTEEEEEE------------CCCCSCEEEEEECTTCTTEEEEEE------
T ss_pred EEEECCC-------------CeEEEEECCCCcchhhhh------------cccCCcEEEEEECCCCCCEEEEEe------
Confidence 8866543 35889998754 322211 112233568999995443244443
Q ss_pred CccccCcccceeeccCCCCCCCCceEeE-eeceeEE-EEEec--CCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS-VSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~-~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
..+.|.++++.. ......+. .....+. ..|+| |++.|+..+. ...|.+.|+.++ ........
T Consensus 161 ------~D~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~--~~~~~~~~ 226 (304)
T 2ynn_A 161 ------LDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK--SCVATLEG 226 (304)
T ss_dssp ------TTSEEEEEETTC--SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTT--EEEEEEEC
T ss_pred ------CCCeEEEEECCC--CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCC--ccceeeCC
Confidence 235788888741 12222332 2234455 67765 7777776552 245666677664 22222222
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
....+.. .+|+|+++.|+..+.+ ..|.+||+.+++......
T Consensus 227 h~~~v~~------~~~~p~~~~l~s~s~D---------------------g~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 227 HMSNVSF------AVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp CSSCEEE------EEECSSSSEEEEEETT---------------------SCEEEEETTTCCEEEEEC
T ss_pred CCCCEEE------EEECCCCCEEEEEcCC---------------------CeEEEEECCCCceeeecc
Confidence 2222222 7799999988887733 278999999887655443
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=145.36 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=121.5
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 588 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~ 588 (751)
+.|+||++||.+. ....| ..+...| ..+|.|++ .+.+|+|.+... .....+..+|+.++
T Consensus 19 ~~~~vv~~HG~~~-----------~~~~~----~~~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~ 79 (267)
T 3fla_A 19 ARARLVCLPHAGG-----------SASFF----FPLAKAL-APAVEVLA---VQYPGRQDRRHEPPVDSIGGLTNRLLEV 79 (267)
T ss_dssp CSEEEEEECCTTC-----------CGGGG----HHHHHHH-TTTEEEEE---ECCTTSGGGTTSCCCCSHHHHHHHHHHH
T ss_pred CCceEEEeCCCCC-----------CchhH----HHHHHHh-ccCcEEEE---ecCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 4699999999641 11111 1233344 45699999 555677655332 22345555555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc----eeEEEEccCCCCCCCCccCccccc--------cc-----
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSYNKTLTPFGFQTEF--------RT----- 651 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~~~~d~~~~~~~~~~~~--------~~----- 651 (751)
++.+ +..+++|+||||||.+|+.++.++|++ ++++++.++............... ..
T Consensus 80 l~~~------~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
T 3fla_A 80 LRPF------GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSD 153 (267)
T ss_dssp TGGG------TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHH
T ss_pred HHhc------CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcc
Confidence 5443 346899999999999999999999986 888888876533211100000000 00
Q ss_pred --chhhH--------------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 652 --LWEAT--------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 652 --~~~~~--------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
..... .....+.... ..++++|+|+++|++|..+| ...+..+.+.+. .+++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~g- 226 (267)
T 3fla_A 154 AAMLADPELLAMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVS--VGEARAWEEHTT---GPADLRVLPG- 226 (267)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCC--HHHHHGGGGGBS---SCEEEEEESS-
T ss_pred hhhccCHHHHHHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCC--HHHHHHHHHhcC---CCceEEEecC-
Confidence 00000 0011111111 15678999999999999998 777666655442 2589999998
Q ss_pred CCcCCccccHHHHHHHHHHHHHHHhcCCCCCC
Q 004475 716 HHVYAARENVMHVIWETDRWLQKYCLSNTSDG 747 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~ 747 (751)
+|.+. .+....+.+.+.+||++.....+...
T Consensus 227 gH~~~-~~~~~~~~~~i~~fl~~~~~~g~~~~ 257 (267)
T 3fla_A 227 GHFFL-VDQAAPMIATMTEKLAGPALTGSTGG 257 (267)
T ss_dssp STTHH-HHTHHHHHHHHHHHTC----------
T ss_pred Cceee-ccCHHHHHHHHHHHhccccccCccCC
Confidence 99876 45677888999999987765444433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-13 Score=140.07 Aligned_cols=310 Identities=12% Similarity=0.018 Sum_probs=164.2
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+.+|+.... ...+....+|.++.++|+.++++.... .....++|||||++|++........
T Consensus 13 ~~~~~vg~y~---~~~~~~i~~~~~d~~~g~~~~~~~~~~----~~p~~l~~spdg~~l~~~~~~~~~~----------- 74 (361)
T 3scy_A 13 ELTMLVGTYT---SGNSKGIYTFRFNEETGESLPLSDAEV----ANPSYLIPSADGKFVYSVNEFSKDQ----------- 74 (361)
T ss_dssp EEEEEEEECC---SSSCCEEEEEEEETTTCCEEEEEEEEC----SCCCSEEECTTSSEEEEEECCSSTT-----------
T ss_pred ceEEEEEecc---CCCCCCEEEEEEeCCCCCEEEeecccC----CCCceEEECCCCCEEEEEEccCCCC-----------
Confidence 3555665422 111345667777878888777754311 1245779999999999885531110
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC---C-ceEEeeeeCCCCceEEEEEecCC
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT---P-AVYTAVEPSPDQKYVLITSMHRP 197 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~---~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (751)
..-.+|.++. +|+.+++.. . .....+++ ||++|++....
T Consensus 75 --------------------------------~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~-- 118 (361)
T 3scy_A 75 --------------------------------AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS-- 118 (361)
T ss_dssp --------------------------------CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT--
T ss_pred --------------------------------CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC--
Confidence 1135566666 376555532 1 33445556 99998876532
Q ss_pred cccccccCCCceeEEEEeCCC-ceeeeecc---CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccC
Q 004475 198 YSYKVPCARFSQKVQVWTTDG-KLVRELCD---LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVS 273 (751)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~ 273 (751)
...+.+|+++. +....+.. ..+. .+.........+..++|+|||++ ++++..
T Consensus 119 ----------~~~v~~~~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~-l~~~~~----------- 174 (361)
T 3scy_A 119 ----------GGSITVFPIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKY-LLADDL----------- 174 (361)
T ss_dssp ----------TTEEEEEEBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSE-EEEEET-----------
T ss_pred ----------CCEEEEEEeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCE-EEEEeC-----------
Confidence 24577888863 32222211 1111 01000111122456899999998 666431
Q ss_pred cccceeeccCCCCCCC----C-ce------EeE-eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 274 PRDIIYTQPAEPAEGE----K-PE------ILH-KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 274 ~~~~l~~~~~~~~~~~----~-~~------~l~-~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
..+.+++++++.. +. . .. .+. ....... ++|||||++|++.... ...|.+++++++ ..+.+
T Consensus 175 ~~~~v~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~~~~~g--~~~~~ 248 (361)
T 3scy_A 175 GTDQIHKFNINPN-ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI---GGTVIAFRYADG--MLDEI 248 (361)
T ss_dssp TTTEEEEEEECTT-CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---TCEEEEEEEETT--EEEEE
T ss_pred CCCEEEEEEEcCC-CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC---CCeEEEEEecCC--ceEEe
Confidence 1245666665421 21 1 11 111 1122344 8999999988776522 235666666553 22222
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec--CCCceeEEeeccchhhh
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI--NTGSKERIWESNREKYF 418 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~ 418 (751)
......... ......++|||||++|++.... ....|.+|++ .+|+.+.+.....
T Consensus 249 ~~~~~~~~~-~~~~~~i~~spdg~~l~v~~~~-------------------~~~~i~v~~~~~~~g~~~~~~~~~~---- 304 (361)
T 3scy_A 249 QTVAADTVN-AQGSGDIHLSPDGKYLYASNRL-------------------KADGVAIFKVDETNGTLTKVGYQLT---- 304 (361)
T ss_dssp EEEESCSSC-CCCEEEEEECTTSSEEEEEECS-------------------SSCEEEEEEECTTTCCEEEEEEEEC----
T ss_pred EEEecCCCC-CCCcccEEECCCCCEEEEECCC-------------------CCCEEEEEEEcCCCCcEEEeeEecC----
Confidence 211111000 0011127899999998776621 0124555555 4676555432211
Q ss_pred hceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 419 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 419 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
...+..++|||||++|++.... ...-.+|.+|+.+|+.+.+.
T Consensus 305 ------g~~~~~~~~spdg~~l~~~~~~-~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 305 ------GIHPRNFIITPNGKYLLVACRD-TNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ------SSCCCEEEECTTSCEEEEEETT-TTEEEEEEECTTTCCEEECS
T ss_pred ------CCCCceEEECCCCCEEEEEECC-CCCEEEEEEECCCCcEeecc
Confidence 1123346899999988876533 22345666888888776543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-13 Score=142.49 Aligned_cols=267 Identities=8% Similarity=0.012 Sum_probs=169.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|++|++.+ ++...... .....+...+|+|||++|+... ..+.|.++++.+++.........
T Consensus 53 dg~i~vwd~~~----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~- 116 (369)
T 3zwl_B 53 DSSASVWYSLN----GERLGTLD-GHTGTIWSIDVDCFTKYCVTGS----------ADYSIKLWDVSNGQCVATWKSPV- 116 (369)
T ss_dssp SSCEEEEETTT----CCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEEECSS-
T ss_pred CCEEEEEeCCC----chhhhhhh-hcCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCcEEEEeecCC-
Confidence 34699999988 77665331 2233688999999999998863 34688899998887655544332
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|+|+.|+........ ....|.+++
T Consensus 117 ----~v~~~~~~~~~~~l~~~~~~~~~--------------------------------------------~~g~i~~~d 148 (369)
T 3zwl_B 117 ----PVKRVEFSPCGNYFLAILDNVMK--------------------------------------------NPGSINIYE 148 (369)
T ss_dssp ----CEEEEEECTTSSEEEEEECCBTT--------------------------------------------BCCEEEEEE
T ss_pred ----CeEEEEEccCCCEEEEecCCccC--------------------------------------------CCCEEEEEE
Confidence 36789999999999887542100 003455555
Q ss_pred C-CC-C-----------ceecCCC-c--eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceee-eec
Q 004475 164 L-DG-T-----------AKDFGTP-A--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVR-ELC 225 (751)
Q Consensus 164 ~-~G-~-----------~~~lt~~-~--~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~-~l~ 225 (751)
+ .+ . ...+... . .+..++|+|||+.|++...+ ..|.+||+.+ .... .+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEE
T ss_pred ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEe
Confidence 5 22 1 1111112 2 77899999999998876433 3688999986 3332 222
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EE
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VS 304 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~ 304 (751)
.+ ...+..+.|+|||+. |+... ..+.|+++++. .............+. +.
T Consensus 216 ~~-------------~~~v~~~~~~~~~~~-l~~~~------------~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 216 LH-------------EKSISDMQFSPDLTY-FITSS------------RDTNSFLVDVS---TLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp CC-------------SSCEEEEEECTTSSE-EEEEE------------TTSEEEEEETT---TCCEEEEEECSSCEEEEE
T ss_pred cC-------------CCceeEEEECCCCCE-EEEec------------CCceEEEEECC---CCceeeeecCCCCceeEE
Confidence 11 233568999999998 55543 23578899885 334433344555666 99
Q ss_pred EecCCceEEEeeeecc----------cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 305 WCDDSLALVNETWYKT----------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~----------~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
|+|+++.|++...... ....+.+.+..++ ............+.. ++|+|||+.|+..+.+
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d-- 336 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFGPLNT------VAISPQGTSYASGGED-- 336 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTC--CEEEEEECCSSCEEE------EEECTTSSEEEEEETT--
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--cchhheecccCcEEE------EEECCCCCEEEEEcCC--
Confidence 9999999988763221 1125666777664 222222222222222 7899999998887732
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
..|.+|+++++.
T Consensus 337 -------------------g~v~iw~~~~~~ 348 (369)
T 3zwl_B 337 -------------------GFIRLHHFEKSY 348 (369)
T ss_dssp -------------------SEEEEEEECHHH
T ss_pred -------------------CeEEEEECcccc
Confidence 268888887554
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=152.30 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=130.0
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 570 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~ 570 (751)
+..+.+..+-+. .|+||++||.+.. ... +...+...||.|++ ++.+|+|.
T Consensus 69 ~~~~~~~~~g~~---------~~~vv~~hG~~~~-----------~~~-------~~~~~~~lg~~Vi~---~D~~G~G~ 118 (330)
T 3p2m_A 69 AGAISALRWGGS---------APRVIFLHGGGQN-----------AHT-------WDTVIVGLGEPALA---VDLPGHGH 118 (330)
T ss_dssp ETTEEEEEESSS---------CCSEEEECCTTCC-----------GGG-------GHHHHHHSCCCEEE---ECCTTSTT
T ss_pred CceEEEEEeCCC---------CCeEEEECCCCCc-----------cch-------HHHHHHHcCCeEEE---EcCCCCCC
Confidence 335666666432 3779999996411 111 12233445999999 55667777
Q ss_pred CCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--------
Q 004475 571 KLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-------- 639 (751)
Q Consensus 571 ~~~~---~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~-------- 639 (751)
+... .....+..+|+.++++.+ +.++++|+||||||.+|+.+|.++|++++++|++++.....
T Consensus 119 S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 192 (330)
T 3p2m_A 119 SAWREDGNYSPQLNSETLAPVLREL------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTA 192 (330)
T ss_dssp SCCCSSCBCCHHHHHHHHHHHHHHS------STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhh
Confidence 6522 223456666666666654 34689999999999999999999999999999998752100
Q ss_pred -CC---c-c----Cccccc--------ccchhhHHH----HHhc-------------C----------cccccCCCCCCE
Q 004475 640 -LT---P-F----GFQTEF--------RTLWEATNV----YIEM-------------S----------PITHANKIKKPI 675 (751)
Q Consensus 640 -~~---~-~----~~~~~~--------~~~~~~~~~----~~~~-------------~----------~~~~~~~~~~P~ 675 (751)
.. . . .+.... ......... +... . ....+.++++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 272 (330)
T 3p2m_A 193 EQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPI 272 (330)
T ss_dssp C-----------CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCE
T ss_pred hhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCE
Confidence 00 0 0 000000 000000000 0000 0 012345689999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEE-EEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSR-LVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
|+++|++|..+| ...++.+.+.+. ..+ ++++++++|... .+..+.+.+.+.+||.+
T Consensus 273 Lii~G~~D~~v~--~~~~~~l~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 273 TLVRGGSSGFVT--DQDTAELHRRAT----HFRGVHIVEKSGHSVQ-SDQPRALIEIVRGVLDT 329 (330)
T ss_dssp EEEEETTCCSSC--HHHHHHHHHHCS----SEEEEEEETTCCSCHH-HHCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCC--HHHHHHHHHhCC----CCeeEEEeCCCCCCcc-hhCHHHHHHHHHHHHhc
Confidence 999999999998 888877776653 457 999999999875 56677888888888853
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-13 Score=137.84 Aligned_cols=264 Identities=8% Similarity=0.061 Sum_probs=163.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++|+..+ ....|.++++.+++.......... .+..++|+|||+.|+..+.+
T Consensus 57 ~v~~~~~s~d~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d---- 118 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSAS----------QDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD---- 118 (340)
T ss_dssp CEEEEEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEEECSSS----CEEEEEECTTSSEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEe----------CCCcEEEEECCCCCcceEeecCCc----cEEEEEECCCCCEEEEEeCC----
Confidence 688899999999998753 336788889887764433222221 36788999999999887542
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--C---ceecCCC-ceEEeeeeCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--T---AKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~---~~~lt~~-~~~~~~~~Sp 184 (751)
..+.++++ ++ . .+.+..+ ..+..+.|+|
T Consensus 119 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 119 ---------------------------------------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ---------------------------------------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred ---------------------------------------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 35556666 32 1 1223334 6677889999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
+++ |+..+. ...+.+||+.+++...... .....+..++|+|||+. ++..+
T Consensus 154 ~~~-l~s~s~-------------d~~i~~wd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~-l~sg~--- 203 (340)
T 1got_B 154 DNQ-IVTSSG-------------DTTCALWDIETGQQTTTFT------------GHTGDVMSLSLAPDTRL-FVSGA--- 203 (340)
T ss_dssp TTE-EEEEET-------------TSCEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSE-EEEEE---
T ss_pred CCc-EEEEEC-------------CCcEEEEECCCCcEEEEEc------------CCCCceEEEEECCCCCE-EEEEe---
Confidence 987 444332 2368899998765432211 11233568999999986 55433
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
..+.|.++++.. +.....+......+. +.|+|+|+.|+.++. ...|.+.++.++ ........
T Consensus 204 ---------~d~~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~--~~~~~~~~ 266 (340)
T 1got_B 204 ---------CDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRAD--QELMTYSH 266 (340)
T ss_dssp ---------TTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTT--EEEEEECC
T ss_pred ---------CCCcEEEEECCC--CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCC--cEEEEEcc
Confidence 235788888751 223334444556677 999999998887652 235566666653 11111111
Q ss_pred cc--ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhce
Q 004475 344 VF--ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 421 (751)
Q Consensus 344 ~~--~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 421 (751)
.. ..+.. ++|+|||+.|+....+ ..|.+||+.+++.......... .+
T Consensus 267 ~~~~~~v~~------~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~~~~h~~----~v 315 (340)
T 1got_B 267 DNIICGITS------VSFSKSGRLLLAGYDD---------------------FNCNVWDALKADRAGVLAGHDN----RV 315 (340)
T ss_dssp TTCCSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECCSS----CE
T ss_pred CCcccceEE------EEECCCCCEEEEECCC---------------------CeEEEEEcccCcEeeEeecCCC----cE
Confidence 11 11112 7899999998887732 3788999987766444332211 12
Q ss_pred eeeecCCcceeeccCCCEEEEE
Q 004475 422 VALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 422 ~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
. .++|+|||+.|+-.
T Consensus 316 ~-------~~~~s~dg~~l~s~ 330 (340)
T 1got_B 316 S-------CLGVTDDGMAVATG 330 (340)
T ss_dssp E-------EEEECTTSSCEEEE
T ss_pred E-------EEEEcCCCCEEEEE
Confidence 2 25799999877644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-14 Score=145.86 Aligned_cols=254 Identities=9% Similarity=0.063 Sum_probs=145.4
Q ss_pred ceeEEeecCCCCCCCCccccc--C-CCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVH--G-YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~--~-~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
..|++++..+ +...... . ......+...+|||||+.|+- .....|.++++.+++...+....
T Consensus 70 ~~v~~~~~~~----~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~-----------s~dg~v~lWd~~~~~~~~~~~~~ 134 (357)
T 4g56_B 70 GSIWVFKDPE----GAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-----------SDSGAVELWEILEKESLLVNKFA 134 (357)
T ss_dssp EEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEE-----------ETTSCEEEC--------CCCCEE
T ss_pred CeEEEEECCC----CCcceeEecccCCCCCCEEEEEEcCCCCEEEE-----------ECCCEEEEeeccccceeEEEeec
Confidence 4578888766 5543211 0 112225788999999976653 22356777788777644332111
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.......+..++|+|||++|+..+.+ ..|.+
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~d-------------------------------------------------g~v~i 165 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKD-------------------------------------------------FSVKV 165 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEE
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCC-------------------------------------------------CeEEE
Confidence 00001247789999999999877442 45777
Q ss_pred EcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +++ ...+..+ ..+..++|+|+++.++++... ...+.+||+.+++....... .
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~------------dg~v~~wd~~~~~~~~~~~~----------~ 223 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE------------DGRILLWDTRKPKPATRIDF----------C 223 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET------------TSCEEECCTTSSSCBCBCCC----------T
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc------------CCceEEEECCCCceeeeeee----------c
Confidence 788 663 3444444 678899999999866555433 23688999986644322111 1
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce-EEEee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA-LVNET 316 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~-l~~~~ 316 (751)
.....+..++|+|++..+++... ..+.|+++++.. +.....+......+. ++||||++. |+..+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~------------~d~~i~~wd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGD------------ETGNVSLVNIKN--PDSAQTSAVHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEE------------SSSCEEEEESSC--GGGCEEECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred cccccccchhhhhcccceEEEee------------cccceeEEECCC--CcEeEEEeccceeEEEEEEcCCCCCEEEEEe
Confidence 11223558899999887344432 235788888751 233444555566677 999999865 44433
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCC-CCCEEEEeee
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIK 371 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp-DG~~l~~~~~ 371 (751)
....|.+.|++++ +..... .....+.. ++||| ||+.|+..+.
T Consensus 290 ----~D~~i~iwd~~~~--~~~~~~-~H~~~V~~------vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 290 ----EDCTVAVLDADFS--EVFRDL-SHRDFVTG------VAWSPLDHSKFTTVGW 332 (357)
T ss_dssp ----TTSCEEEECTTSC--EEEEEC-CCSSCEEE------EEECSSSTTEEEEEET
T ss_pred ----CCCEEEEEECCCC--cEeEEC-CCCCCEEE------EEEeCCCCCEEEEEcC
Confidence 2245777788774 222222 12222333 88998 8988887773
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-13 Score=157.72 Aligned_cols=241 Identities=12% Similarity=0.098 Sum_probs=159.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee-eccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
.+...+|||||++||+.. ..+.|.++++.+++.. .+..... .+..++|||||++|+..+.+
T Consensus 15 ~v~~i~~sp~~~~la~~~----------~~g~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~d--- 76 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL----------YSGRVEIWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSDD--- 76 (814)
T ss_dssp CEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEETT---
T ss_pred ceEEEEECCCCCEEEEEe----------CCCEEEEEECCCCceEEEEecCCC-----cEEEEEEeCCCCEEEEEeCC---
Confidence 588999999999999963 3467888898887643 3432222 37889999999999988542
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|.++++ +|+ ...+..+ ..+..++|+|||+
T Consensus 77 ----------------------------------------------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 77 ----------------------------------------------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp ----------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 47888888 663 4455545 7789999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCc-ee-eeeccCCCCCCCCCccCCccCCCceeeeec-CCCceEEEEEecc
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV-RELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQD 264 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~~~~ 264 (751)
+|+....+ ..+.+|+.+++ .. ..+..+ ...+..++|+| ||+. ++...
T Consensus 111 ~l~~~~~d-------------g~i~vw~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~-l~~~~--- 160 (814)
T 3mkq_A 111 YVLSGSDD-------------LTVKLWNWENNWALEQTFEGH-------------EHFVMCVAFNPKDPST-FASGC--- 160 (814)
T ss_dssp EEEEEETT-------------SEEEEEEGGGTSEEEEEEECC-------------SSCEEEEEEETTEEEE-EEEEE---
T ss_pred EEEEEcCC-------------CEEEEEECCCCceEEEEEcCC-------------CCcEEEEEEEcCCCCE-EEEEe---
Confidence 98876433 36889998754 32 222211 22356889999 7776 55543
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEec--CCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
..+.|.++++.. +.....+.... ..+. +.|+| ++..|+.... ...|.+.+..++ .....
T Consensus 161 ---------~dg~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~--~~~~~ 223 (814)
T 3mkq_A 161 ---------LDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK--SCVAT 223 (814)
T ss_dssp ---------TTSEEEEEETTC--SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTT--EEEEE
T ss_pred ---------CCCeEEEEECCC--CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCC--cEEEE
Confidence 235788888751 22333333322 4555 89998 9998887652 346777787764 22222
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
.......+.. ++|+|||+.|+..+.+ ..|++||+.+++.....
T Consensus 224 ~~~~~~~v~~------~~~~~~~~~l~~~~~d---------------------g~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 224 LEGHMSNVSF------AVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EECCSSCEEE------EEECSSSSEEEEEETT---------------------SCEEEEETTTCSEEEEE
T ss_pred EcCCCCCEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCcEEEEe
Confidence 2222222222 7899999988887732 26888898877665443
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=147.13 Aligned_cols=209 Identities=7% Similarity=-0.068 Sum_probs=133.4
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+-+ .|+||++||.+.. ...|.. +...| .++|.|++ ++.+|+
T Consensus 15 ~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~~~----~~~~l-~~~~~vi~---~D~~G~ 65 (297)
T 2qvb_A 15 IAGKRMAYIDEGK----------GDAIVFQHGNPTS-----------SYLWRN----IMPHL-EGLGRLVA---CDLIGM 65 (297)
T ss_dssp ETTEEEEEEEESS----------SSEEEEECCTTCC-----------GGGGTT----TGGGG-TTSSEEEE---ECCTTS
T ss_pred ECCEEEEEEecCC----------CCeEEEECCCCch-----------HHHHHH----HHHHH-hhcCeEEE---EcCCCC
Confidence 4676776665521 3789999997521 112221 12233 34699999 566677
Q ss_pred CCCCCCc------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 569 GDKLPND------RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 569 g~~~~~~------~~~~~~~~d~~~~v~~l~~~~~id~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
|.+.... ....+..+|+.++++.+ +. .+++++||||||.+|+.++.++|++++++|++++.......
T Consensus 66 G~S~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~ 139 (297)
T 2qvb_A 66 GASDKLSPSGPDRYSYGEQRDFLFALWDAL------DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTW 139 (297)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCG
T ss_pred CCCCCCCCccccCcCHHHHHHHHHHHHHHc------CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccC
Confidence 7764432 34556677777776654 23 68999999999999999999999999999999986531100
Q ss_pred c-cC-----------ccc----------------------ccc---------------cchhh-HHHHHhc---------
Q 004475 642 P-FG-----------FQT----------------------EFR---------------TLWEA-TNVYIEM--------- 662 (751)
Q Consensus 642 ~-~~-----------~~~----------------------~~~---------------~~~~~-~~~~~~~--------- 662 (751)
. .. ... ... ..... ...+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2qvb_A 140 ADWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEV 219 (297)
T ss_dssp GGSCGGGHHHHHHHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHH
T ss_pred CCCChHHHHHHHHHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhh
Confidence 0 00 000 000 00000 0000111
Q ss_pred -----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 663 -----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 663 -----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.....+.++++|+|+++|++|..+| ...++.+.+.+ .. +++++ +++|... .+....+.+.+.+||+
T Consensus 220 ~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~~~p~~~~~~i~~fl~ 290 (297)
T 2qvb_A 220 VALVNEYRSWLEETDMPKLFINAEPGAIIT--GRIRDYVRSWP----NQ-TEITV-PGVHFVQ-EDSPEEIGAAIAQFVR 290 (297)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHTSS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccEEEEecCCCCcCC--HHHHHHHHHHc----CC-eEEEe-cCccchh-hhCHHHHHHHHHHHHH
Confidence 1122345689999999999999998 77766665443 34 78888 9999876 5667889999999998
Q ss_pred HHhc
Q 004475 738 KYCL 741 (751)
Q Consensus 738 ~~l~ 741 (751)
+...
T Consensus 291 ~~~~ 294 (297)
T 2qvb_A 291 RLRS 294 (297)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7653
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=147.73 Aligned_cols=212 Identities=11% Similarity=0.059 Sum_probs=127.1
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC-CCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGD 570 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~g~g~ 570 (751)
..+....+.|.. ...|+||++||.+. +...+ .+...+...| ++||.|++++.+ +.+|+|.
T Consensus 24 ~~~~y~~~g~~~------~~~~~vvllHG~~~-----------~~~~~-~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~ 84 (335)
T 2q0x_A 24 PYCKIPVFMMNM------DARRCVLWVGGQTE-----------SLLSF-DYFTNLAEEL-QGDWAFVQVEVPSGKIGSGP 84 (335)
T ss_dssp TTEEEEEEEECT------TSSSEEEEECCTTC-----------CTTCS-TTHHHHHHHH-TTTCEEEEECCGGGBTTSCS
T ss_pred CceeEEEeccCC------CCCcEEEEECCCCc-----------cccch-hHHHHHHHHH-HCCcEEEEEeccCCCCCCCC
Confidence 445555555311 12578999999531 10111 1111233344 789999985432 5678887
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH--hCCCceeEEEEccCCCCCCCCccCc---
Q 004475 571 KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA--HAPHLFCCGIARSGSYNKTLTPFGF--- 645 (751)
Q Consensus 571 ~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~--~~p~~~~~~v~~~~~~d~~~~~~~~--- 645 (751)
+. .....+|+.++++++.+. ++..+++|+||||||.+|+.++. .+|++++++|+.++..+........
T Consensus 85 S~-----~~~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~ 157 (335)
T 2q0x_A 85 QD-----HAHDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGC 157 (335)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHH
T ss_pred cc-----ccCcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHH
Confidence 63 234567888888888774 34578999999999999999998 4789999999998864322000000
Q ss_pred c-----------c----cc--ccch-h---hHHHHH-------------------hcCcccccCCCCCCEEEEEcCCCCC
Q 004475 646 Q-----------T----EF--RTLW-E---ATNVYI-------------------EMSPITHANKIKKPILIIHGEVDDK 685 (751)
Q Consensus 646 ~-----------~----~~--~~~~-~---~~~~~~-------------------~~~~~~~~~~~~~P~li~~G~~D~~ 685 (751)
. . .. ...+ . ....+. .......+.++++|+|+++|++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~ 237 (335)
T 2q0x_A 158 AARKEHVEKLMAEGRGEDSLAMLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQY 237 (335)
T ss_dssp HHHHHHHHHHHHHTCTTCGGGGTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTC
T ss_pred HHHHHHHHHHhhccCccccccchhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCC
Confidence 0 0 00 0000 0 000000 0011234677899999999999999
Q ss_pred CCCChHH-HHHHHHHHHhCCCcEE--------E-----EEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 686 VGLFPMQ-AERFFDALKGHGALSR--------L-----VLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 686 vp~~~~~-~~~~~~~l~~~~~~~~--------~-----~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+| +.. ...+.+.+.+.-...+ + +++|+++| +..+.+.+||.+..
T Consensus 238 vp--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~ 295 (335)
T 2q0x_A 238 KP--SDEEVGTVLEGVRDHTGCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADED 295 (335)
T ss_dssp CC--CHHHHHHHHHHHHHHSSSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHH
T ss_pred CC--hhhhHHHHHHHHHHhcCccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhh
Confidence 98 653 2233344433212223 5 78999999 23788899997653
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-15 Score=157.99 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=55.2
Q ss_pred cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 666 THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 666 ~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
..+.++++|+|+++|++|.++| ...++++.+.+. .+++++++ ++||... .+....+.+.+.+||.+++
T Consensus 375 ~~l~~i~~PvLvi~G~~D~~~p--~~~~~~l~~~~p----~~~~~~i~~~~GH~~~-~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 375 EALAMITQPALIICARSDGLYS--FDEHVEMGRSIP----NSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHTTCCSCEEEEECTTCSSSC--HHHHHHHHHHST----TEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHTC--
T ss_pred HHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHCC----CcEEEEeCCCCCcchH-HhCHHHHHHHHHHHHHHhc
Confidence 3467889999999999999998 888887777664 46899999 8999876 4567788899999997654
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=141.09 Aligned_cols=196 Identities=8% Similarity=-0.031 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 589 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v 589 (751)
|.||++||.+. +...|. .....|+++||.|++ ++.+|+|.+.... ...++..+|+.+.+
T Consensus 4 ~~vvllHG~~~-----------~~~~w~----~~~~~L~~~g~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (257)
T 3c6x_A 4 AHFVLIHTICH-----------GAWIWH----KLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL 65 (257)
T ss_dssp CEEEEECCTTC-----------CGGGGT----THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH
T ss_pred CcEEEEcCCcc-----------CcCCHH----HHHHHHHhCCCEEEE---eCCCCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 67999999641 111121 345677789999999 6777888875421 23456666666665
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-Ccc-----------Cccccc--------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-TPF-----------GFQTEF-------- 649 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~-~~~-----------~~~~~~-------- 649 (751)
+.+ + ...++.|+||||||.+++.++.++|++++++|++++...... ... .+....
T Consensus 66 ~~l---~--~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 3c6x_A 66 EAL---P--PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDG 140 (257)
T ss_dssp HTS---C--TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETT
T ss_pred Hhc---c--ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCC
Confidence 543 1 125899999999999999999999999999999886421100 000 000000
Q ss_pred ---ccchhhH----------------HHHHh-cCcc----------ccc--CC-CCCCEEEEEcCCCCCCCCChHHHHHH
Q 004475 650 ---RTLWEAT----------------NVYIE-MSPI----------THA--NK-IKKPILIIHGEVDDKVGLFPMQAERF 696 (751)
Q Consensus 650 ---~~~~~~~----------------~~~~~-~~~~----------~~~--~~-~~~P~li~~G~~D~~vp~~~~~~~~~ 696 (751)
....... ..... ..+. ..+ .. .++|+|+++|++|..+| +..++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p--~~~~~~~ 218 (257)
T 3c6x_A 141 KEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQ 218 (257)
T ss_dssp EEEEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHH
T ss_pred CccccccccHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccC--HHHHHHH
Confidence 0000000 00000 0000 000 11 26899999999999998 8887777
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 697 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+.+. ..+++++|+++|... .+..+.+.+.+.+|+++
T Consensus 219 ~~~~~----~~~~~~i~~~gH~~~-~e~P~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 219 IENYK----PDKVYKVEGGDHKLQ-LTKTKEIAEILQEVADT 255 (257)
T ss_dssp HHHSC----CSEEEECCSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred HHHCC----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHHHh
Confidence 76653 358999999999876 67778899999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-13 Score=142.67 Aligned_cols=305 Identities=10% Similarity=0.066 Sum_probs=170.4
Q ss_pred cccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec-CCcEEEEeecCCC
Q 004475 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~ 109 (751)
.+...+|||+ ++.||.- ...+.|.++++.+++...+.....+ ...+..++|+| |++.|+..+.+
T Consensus 121 ~V~~l~~~P~~~~~lasG----------s~dg~i~lWd~~~~~~~~~~~~~gH--~~~V~~l~f~p~~~~~l~s~s~D-- 186 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVG----------SKGGDIMLWNFGIKDKPTFIKGIGA--GGSITGLKFNPLNTNQFYASSME-- 186 (435)
T ss_dssp CEEEEEECSSCTTCEEEE----------ETTSCEEEECSSCCSCCEEECCCSS--SCCCCEEEECSSCTTEEEEECSS--
T ss_pred CEEEEEEeCCCCCEEEEE----------eCCCEEEEEECCCCCceeEEEccCC--CCCEEEEEEeCCCCCEEEEEeCC--
Confidence 4788999995 5566663 3346788888887765443322221 11478899998 68887766432
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC----ceEEeeeeCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPSP 184 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~----~~~~~~~~Sp 184 (751)
..|.++|+.+ ..+.+... ..+..++|+|
T Consensus 187 -----------------------------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 187 -----------------------------------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp -----------------------------------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred -----------------------------------------------CEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 3566778854 33333222 3456789999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
||+.|+....+ ..|.+||++++....+.. ....+..++|+|+++.+++..+
T Consensus 220 ~~~~l~~g~~d-------------g~i~~wd~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~~~~s~s--- 270 (435)
T 4e54_B 220 SSRMVVTGDNV-------------GNVILLNMDGKELWNLRM-------------HKKKVTHVALNPCCDWFLATAS--- 270 (435)
T ss_dssp TTTEEEEECSS-------------SBEEEEESSSCBCCCSBC-------------CSSCEEEEEECTTCSSEEEEEE---
T ss_pred CCCEEEEEeCC-------------CcEeeeccCcceeEEEec-------------ccceEEeeeecCCCceEEEEec---
Confidence 99998875432 368899998765443322 2234668999999998444433
Q ss_pred CCCCccccCcccceeeccCCCCCCC-CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
..+.|.++++...... ...........+. +.|+|||++|+..+. ...|.+.++.++ .....+..
T Consensus 271 ---------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~-~~~~~~~~ 336 (435)
T 4e54_B 271 ---------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQW-DCPLGLIP 336 (435)
T ss_dssp ---------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSS-SSEEEECC
T ss_pred ---------CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCC-ccceEEec
Confidence 2246777776421111 1111123345566 899999999887652 235666666654 22222222
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhcee
Q 004475 343 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 422 (751)
Q Consensus 343 ~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 422 (751)
..... ..........|+|++..++...... +..+++ .......|.+||..+|+.......... ..+.
T Consensus 337 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~------~~~~~~~i~iwd~~~g~~~~~l~~~~~---~~v~ 403 (435)
T 4e54_B 337 HPHRH-FQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSC------TPYELRTIDVFDGNSGKMMCQLYDPES---SGIS 403 (435)
T ss_dssp CCCCC-CSSSCCCBCEECSSSSCEEEECCCC---TTSCCS------STTCCCCEEEECSSSCCEEEEECCSSC---CCCC
T ss_pred ccccc-cccceeEEEEEcCCCCEEEEEEcCC---CCeEEE------EecCCCEEEEEECCCCcEEEEEeCCCC---CcEE
Confidence 11110 0000111156889998877765321 111110 112234688999998876543322111 0111
Q ss_pred eeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 423 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 423 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
. ..+|||||+.|+- . + . ..|.++++.+|+.+
T Consensus 404 s------~~~fspdg~~las-g-~-d--~~i~iW~~~~gk~r 434 (435)
T 4e54_B 404 S------LNEFNPMGDTLAS-A-M-G--YHILIWSQQEARTR 434 (435)
T ss_dssp C------EEEECTTSSCEEE-E-C-S--SEEEECCCC-----
T ss_pred E------EEEECCCCCEEEE-E-c-C--CcEEEEECCcCeee
Confidence 1 1368999997763 2 2 1 36899999888765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=141.98 Aligned_cols=276 Identities=9% Similarity=-0.019 Sum_probs=141.2
Q ss_pred eeEEeecCCCCCCCCcccccCC--CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC-CCCeeeccCCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGY--PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~--~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~-~g~~~~lt~~~~ 82 (751)
+|++++++. .+|+.+.+... .........+|||||++|+.+. .. .|.+++++ +|+..++.....
T Consensus 15 ~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~---------~~--~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA---------MK--KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE---------BT--EEEEEEEEETTEEEEEEEEEC
T ss_pred cEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc---------cc--eEEEEEECCCCCEEEeeEeec
Confidence 588887754 44777666432 1222467889999999887653 12 67777765 676555432111
Q ss_pred ccccceeeeeEEecCCcEE-EEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLL-IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. ....++|||||++| ++..... .. ...... .+ .......+|.
T Consensus 82 ~g---~~~~~~~spdg~~l~~~~~~~~--~~------------~~~~~~------~~-------------~~~g~v~v~~ 125 (365)
T 1jof_A 82 GG---HPRANDADTNTRAIFLLAAKQP--PY------------AVYANP------FY-------------KFAGYGNVFS 125 (365)
T ss_dssp CS---SGGGGCTTSCCEEEEEEECSST--TC------------CEEEEE------ES-------------SSCCEEEEEE
T ss_pred CC---CCccEEECCCCCEEEEEEecCC--cc------------eeccce------ee-------------cCCceEEEEc
Confidence 00 12457999999974 3442200 00 000000 00 0001124455
Q ss_pred EcCCCCce-ecC-----CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCCC
Q 004475 162 GSLDGTAK-DFG-----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIP 234 (751)
Q Consensus 162 ~~~~G~~~-~lt-----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~ 234 (751)
++.+|+.. .+. .......++|||||++|++.... ...|++|+++ +++.+.+......
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~---- 189 (365)
T 1jof_A 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAP---- 189 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECS----
T ss_pred cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecC----
Confidence 54456432 222 12567789999999998775322 2468899987 6655433211100
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce----EeEee----c--e-----
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE----ILHKL----D--L----- 299 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~----~--~----- 299 (751)
....+++.++|||||++ ++++.. ..+.+.+++++..++ ... .+... . .
T Consensus 190 ----~~g~~p~~~~~spdg~~-l~v~~~-----------~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 190 ----DPGDHPRWVAMHPTGNY-LYALME-----------AGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp ----STTCCEEEEEECTTSSE-EEEEET-----------TTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred ----CCCCCCCEeEECCCCCE-EEEEEC-----------CCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCccccccc
Confidence 01234678999999998 666431 113444444321112 221 12111 0 1
Q ss_pred --eEE-EE-EecCCceEEEeeeeccc----ceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCC---CCCEEE
Q 004475 300 --RFS-VS-WCDDSLALVNETWYKTS----QTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTS---TGTNVI 367 (751)
Q Consensus 300 --~~~-~~-~spdg~~l~~~~~~~~~----~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~sp---DG~~l~ 367 (751)
... ++ |||||++|+.+...... .-.+|.++. ++ ..+.+.. ...... ....++||| ||++|+
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g--~~~~~~~~~~~~~~----~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CG--SIEKQLFLSPTPTS----GGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TS--CEEEEEEEEECSSC----CTTCCCEEECTTCTTEEE
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CC--CEEEeeeeeecCCC----CcccceecCCCcCCCEEE
Confidence 345 88 99999988654422110 234555543 32 2332211 110000 011167899 899988
Q ss_pred Eee
Q 004475 368 AKI 370 (751)
Q Consensus 368 ~~~ 370 (751)
+..
T Consensus 326 v~~ 328 (365)
T 1jof_A 326 ITD 328 (365)
T ss_dssp EEC
T ss_pred EEE
Confidence 776
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-13 Score=141.67 Aligned_cols=264 Identities=11% Similarity=0.083 Sum_probs=167.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||+.|+..+ ....|.++++.+++..+...+... .+..++|+|||+.|+..+.+
T Consensus 110 ~V~~~~~~p~~~~l~s~s----------~Dg~i~vwd~~~~~~~~~l~~h~~----~V~~v~~~~~~~~l~sgs~D---- 171 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSAS----------EDATIKVWDYETGDFERTLKGHTD----SVQDISFDHSGKLLASCSAD---- 171 (410)
T ss_dssp CEEEEEECSSSSEEEEEE----------SSSCEEEEETTTCCCCEEECCCSS----CEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCcEEEEEeccCC----cEEEEEEcCCCCEEEEEeCC----
Confidence 577889999999988753 346788889988875444333221 47789999999988877543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|.++|+ +++ .+.+..+ ..+..++|+|||++
T Consensus 172 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 172 ---------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp ---------------------------------------------SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred ---------------------------------------------CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 34556677 443 3344444 67889999999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+..+.+ ..+.+||+.++... .+.. ....+..+.|+|||+. |+..+
T Consensus 207 l~s~s~D-------------~~i~~wd~~~~~~~~~~~~-------------h~~~v~~~~~~~~g~~-l~s~s------ 253 (410)
T 1vyh_C 207 IVSASRD-------------KTIKMWEVQTGYCVKTFTG-------------HREWVRMVRPNQDGTL-IASCS------ 253 (410)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECTTSSE-EEEEE------
T ss_pred EEEEeCC-------------CeEEEEECCCCcEEEEEeC-------------CCccEEEEEECCCCCE-EEEEc------
Confidence 8766543 36889999876532 2221 1233567899999997 55543
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC--------------------CceEEEeeeecccceeEE
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD--------------------SLALVNETWYKTSQTRTW 326 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd--------------------g~~l~~~~~~~~~~~~l~ 326 (751)
..+.|.++++.. +.....+......+. +.|+|+ |..|+.++ ....|.
T Consensus 254 ------~D~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs----~D~~i~ 321 (410)
T 1vyh_C 254 ------NDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIK 321 (410)
T ss_dssp ------TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE----TTSEEE
T ss_pred ------CCCeEEEEECCC--CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe----CCCeEE
Confidence 235788888741 222333444555666 899997 44555444 234677
Q ss_pred EecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 327 LVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
+.|+.++ ............+.. ++|+|+|++|+..+.+ ..|++||+.+++.
T Consensus 322 iwd~~~~--~~~~~~~~h~~~v~~------v~~~~~g~~l~s~s~D---------------------~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 322 MWDVSTG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTLRVWDYKNKRC 372 (410)
T ss_dssp EEETTTT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEEEEECCTTSCC
T ss_pred EEECCCC--ceEEEEECCCCcEEE------EEEcCCCCEEEEEeCC---------------------CeEEEEECCCCce
Confidence 7777764 222222222222222 7899999999887732 3789999988765
Q ss_pred eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 407 ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 407 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
......... .+.. ++|+|+++.|+..
T Consensus 373 ~~~~~~h~~----~v~~-------l~~~~~~~~l~sg 398 (410)
T 1vyh_C 373 MKTLNAHEH----FVTS-------LDFHKTAPYVVTG 398 (410)
T ss_dssp CEEEECCSS----CEEE-------EEECSSSSCEEEE
T ss_pred EEEEcCCCC----cEEE-------EEEcCCCCEEEEE
Confidence 444332211 1222 5889999877643
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=143.57 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHH
Q 004475 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEV 592 (751)
Q Consensus 514 ~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~~l 592 (751)
.||++||.+. +...|. .....| ..+|.|++ ++.+|+|.+..... .... .++.+
T Consensus 15 ~vvllHG~~~-----------~~~~w~----~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~-------~~~~l 68 (258)
T 1m33_A 15 HLVLLHGWGL-----------NAEVWR----CIDEEL-SSHFTLHL---VDLPGFGRSRGFGALSLAD-------MAEAV 68 (258)
T ss_dssp EEEEECCTTC-----------CGGGGG----GTHHHH-HTTSEEEE---ECCTTSTTCCSCCCCCHHH-------HHHHH
T ss_pred eEEEECCCCC-----------ChHHHH----HHHHHh-hcCcEEEE---eeCCCCCCCCCCCCcCHHH-------HHHHH
Confidence 8999999641 112222 233344 46899999 66778887754321 1222 22333
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-ccC-cccc--------c-------------
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-PFG-FQTE--------F------------- 649 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-~~~-~~~~--------~------------- 649 (751)
.+. ++ +++.|+||||||.+|+.+|.++|++++++|++++....... .+. .... .
T Consensus 69 ~~~--l~-~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T 1m33_A 69 LQQ--AP-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLA 145 (258)
T ss_dssp HTT--SC-SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--hC-CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHH
Confidence 332 33 68999999999999999999999999999998764221100 000 0000 0
Q ss_pred ----ccch--hhHH----------------------HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 004475 650 ----RTLW--EATN----------------------VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 701 (751)
Q Consensus 650 ----~~~~--~~~~----------------------~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~ 701 (751)
.... ...+ .+........+.++++|+|+++|++|..+| ...++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~- 222 (258)
T 1m33_A 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW- 222 (258)
T ss_dssp TTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTC-
T ss_pred HHhcCCccchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCC--HHHHHHHHHhC-
Confidence 0000 0000 001112223456789999999999999998 66655444332
Q ss_pred hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 702 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 702 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
...+++++++++|... .+..+.+.+.+.+||.+
T Consensus 223 ---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 223 ---PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQR 255 (258)
T ss_dssp ---TTCEEEEETTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred ---ccceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 3468999999999876 45677888899999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=140.56 Aligned_cols=230 Identities=9% Similarity=0.074 Sum_probs=141.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+||||+ +|+.. ...+.|.++++++++...............+..++|||||++|+..+.+
T Consensus 84 ~v~~~~~s~d~-~l~~~----------s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---- 148 (344)
T 4gqb_B 84 GVADLTWVGER-GILVA----------SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---- 148 (344)
T ss_dssp CEEEEEEETTT-EEEEE----------ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEeCCC-eEEEE----------ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 46788999997 45543 2346788888888764332211000001147889999999999887543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
..|.++|+ +|+ ...+..+ ..+..++|+||++.
T Consensus 149 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 149 ---------------------------------------------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 36777888 664 3455545 77889999999987
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
++++... ...|.+||+.+++......... ....+..+.|+|++..+++..+
T Consensus 184 ~l~s~s~------------D~~v~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~~~~l~sg~------- 234 (344)
T 4gqb_B 184 VFLSCSE------------DNRILLWDTRCPKPASQIGCSA----------PGYLPTSLAWHPQQSEVFVFGD------- 234 (344)
T ss_dssp EEEEEET------------TSCEEEEETTSSSCEEECC--------------CCCEEEEEECSSCTTEEEEEE-------
T ss_pred ceeeecc------------ccccccccccccceeeeeecce----------eeccceeeeecCCCCcceEEec-------
Confidence 7665433 3468899998765432211110 1122457899998887344433
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCce-EEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
..+.|.++|+. ++.....+......+. ++|||||.. |+..+ ....|.+.|..++ +...+ .....
T Consensus 235 -----~dg~v~~wd~~--~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs----~D~~i~vwd~~~~--~~~~~-~~H~~ 300 (344)
T 4gqb_B 235 -----ENGTVSLVDTK--STSCVLSSAVHSQCVTGLVFSPHSVPFLASLS----EDCSLAVLDSSLS--ELFRS-QAHRD 300 (344)
T ss_dssp -----TTSEEEEEESC--C--CCEEEECCSSCEEEEEECSSSSCCEEEEE----TTSCEEEECTTCC--EEEEE-CCCSS
T ss_pred -----cCCcEEEEECC--CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--cEEEE-cCCCC
Confidence 23578888885 2344555666666777 999999965 54433 2245666787774 22222 22222
Q ss_pred cccCCCCCCCeeeCCCCCEEEEee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+.. ++|||||+.|+...
T Consensus 301 ~V~~------v~~sp~~~~llas~ 318 (344)
T 4gqb_B 301 FVRD------ATWSPLNHSLLTTV 318 (344)
T ss_dssp CEEE------EEECSSSTTEEEEE
T ss_pred CEEE------EEEeCCCCeEEEEE
Confidence 3333 88999998776544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=134.77 Aligned_cols=290 Identities=13% Similarity=0.048 Sum_probs=165.8
Q ss_pred cccceee-----cC-CCCeEEEEEeecccccccCCceeEEEEEcCCCC-------e-eeccCCCCccccceeeeeEEecC
Q 004475 32 KINFVSW-----SP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNN 97 (751)
Q Consensus 32 ~~~~p~~-----SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-------~-~~lt~~~~~~~~~~~~~~~wspD 97 (751)
.+...+| +| ||+.||..+. + ..|.++++..++ . +.+..... .+..++|+||
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~--------D--~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSR--------D--KTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEET--------T--SCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcC--------C--CEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 5677788 77 9999887542 3 455555654432 1 12221111 3678999999
Q ss_pred CcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-
Q 004475 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP- 174 (751)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~- 174 (751)
++.|+..+.+ ..|.++|+ +|+ ...+..+
T Consensus 88 ~~~l~s~s~D-------------------------------------------------~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSSWD-------------------------------------------------KTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEETT-------------------------------------------------SEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEcCC-------------------------------------------------CcEEEEECCCCcEEEEEcCCC
Confidence 9988876442 46788888 664 3455545
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|+|||++|+..+.+ ..+.+||+.+.....+.... .....+..+.|+|+++
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECKFSSAEKE----------NHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEEEECCTTT----------SCSSCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCceeeeeccc----------CCCceeeeeeeccccc
Confidence 778899999999998876543 35889998754333221110 1122356789999884
Q ss_pred ---------ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 255 ---------STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 255 ---------~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
..++..+ ..+.|.+++.. ......+......+. ++|+|||++|+..+. ...
T Consensus 176 ~~~~~~~~~~~l~s~~------------~d~~i~iwd~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~ 236 (343)
T 2xzm_R 176 SANKVQPFAPYFASVG------------WDGRLKVWNTN---FQIRYTFKAHESNVNHLSISPNGKYIATGGK----DKK 236 (343)
T ss_dssp SCSCCCSSCCEEEEEE------------TTSEEEEEETT---TEEEEEEECCSSCEEEEEECTTSSEEEEEET----TCE
T ss_pred cccccCCCCCEEEEEc------------CCCEEEEEcCC---CceeEEEcCccccceEEEECCCCCEEEEEcC----CCe
Confidence 2133332 23577888753 323334444556677 999999999887652 235
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
|.+.++... .......... ..+.. ++|+||++.|+... + ..+.+|++.++
T Consensus 237 v~iwd~~~~-~~~~~~~~~~-~~v~~------v~~sp~~~~la~~~-d---------------------~~v~iw~~~~~ 286 (343)
T 2xzm_R 237 LLIWDILNL-TYPQREFDAG-STINQ------IAFNPKLQWVAVGT-D---------------------QGVKIFNLMTQ 286 (343)
T ss_dssp EEEEESSCC-SSCSEEEECS-SCEEE------EEECSSSCEEEEEE-S---------------------SCEEEEESSSC
T ss_pred EEEEECCCC-cccceeecCC-CcEEE------EEECCCCCEEEEEC-C---------------------CCEEEEEeCCC
Confidence 556666332 1112222111 11222 88999998776544 1 15788888776
Q ss_pred ceeEEeeccch--hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 405 SKERIWESNRE--KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 405 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
+...+...... ...............++|+|||+.|+... . -+.+.++++.+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~---Dg~v~~w~~~~g 341 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF-T---DGVIRTFSFETS 341 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE-T---TSEEEEEEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec-C---CceEEEEEEEcc
Confidence 54332111100 00000000011112368999999877543 2 245777776543
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=144.30 Aligned_cols=212 Identities=16% Similarity=0.092 Sum_probs=134.6
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|..+.+...-+ ++.|.||++||.+. +...|. .....|+ ..|.|++ +|.+|+|
T Consensus 15 ~g~~l~y~~~G~--------g~~~pvvllHG~~~-----------~~~~w~----~~~~~L~-~~~~via---~Dl~G~G 67 (316)
T 3afi_E 15 LGSSMAYRETGA--------QDAPVVLFLHGNPT-----------SSHIWR----NILPLVS-PVAHCIA---PDLIGFG 67 (316)
T ss_dssp TTEEEEEEEESC--------TTSCEEEEECCTTC-----------CGGGGT----TTHHHHT-TTSEEEE---ECCTTST
T ss_pred CCEEEEEEEeCC--------CCCCeEEEECCCCC-----------chHHHH----HHHHHHh-hCCEEEE---ECCCCCC
Confidence 566666655432 12358999999641 112222 2234444 4599999 6777888
Q ss_pred CCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC---CCCc--
Q 004475 570 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK---TLTP-- 642 (751)
Q Consensus 570 ~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~---~~~~-- 642 (751)
.+... ........+|+.++++.+ +.+++.|+||||||.+|+.+|.++|++++++|+.++.... ....
T Consensus 68 ~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 141 (316)
T 3afi_E 68 QSGKPDIAYRFFDHVRYLDAFIEQR------GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHT 141 (316)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccch
Confidence 87543 223556677777776654 2368999999999999999999999999999998863210 0000
Q ss_pred ------------------cCccc------------------c-cccch--hhHHHHHh-----------------cCc--
Q 004475 643 ------------------FGFQT------------------E-FRTLW--EATNVYIE-----------------MSP-- 664 (751)
Q Consensus 643 ------------------~~~~~------------------~-~~~~~--~~~~~~~~-----------------~~~-- 664 (751)
..... . ..... ...+.+.. ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (316)
T 3afi_E 142 EVAEEQDHAEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAG 221 (316)
T ss_dssp CCGGGHHHHHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTT
T ss_pred hhccccccchhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccc
Confidence 00000 0 00000 00000100 000
Q ss_pred ------------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHH
Q 004475 665 ------------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWET 732 (751)
Q Consensus 665 ------------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 732 (751)
...+.++++|+|+++|++|..+| ...++.+.+.++ ..++++++++||... .+....+.+.+
T Consensus 222 ~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~p----~~~~~~i~~~GH~~~-~e~p~~~~~~i 294 (316)
T 3afi_E 222 EPADVYEALQSAHAALAASSYPKLLFTGEPGALVS--PEFAERFAASLT----RCALIRLGAGLHYLQ-EDHADAIGRSV 294 (316)
T ss_dssp BSHHHHHHHHHHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHSS----SEEEEEEEEECSCHH-HHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhccCCCeEEEecCCCCccC--HHHHHHHHHhCC----CCeEEEcCCCCCCch-hhCHHHHHHHH
Confidence 01123578999999999999998 777777766553 468999999999876 56678899999
Q ss_pred HHHHHHHhc
Q 004475 733 DRWLQKYCL 741 (751)
Q Consensus 733 ~~fl~~~l~ 741 (751)
.+||.+...
T Consensus 295 ~~fl~~~~~ 303 (316)
T 3afi_E 295 AGWIAGIEA 303 (316)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhcCC
Confidence 999987654
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=140.57 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=143.5
Q ss_pred EEEEEEc-CCCceEEEEEEcCCCCCCC---CCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 482 EMIKYQR-KDGVPLTATLYLPPGYDQS---KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 482 e~i~~~~-~~~~~i~~~~~~P~~~~~~---~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.++++.+ .-+..+...+|+|+++... +++++|+|+++||.+ ++...|.... .....+.+.|.++
T Consensus 15 ~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~-----------~~~~~w~~~~-~~~~~~~~~~~~~ 82 (299)
T 4fol_A 15 IKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLT-----------CTPDNASEKA-FWQFQADKYGFAI 82 (299)
T ss_dssp EEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTT-----------CCHHHHHHHS-CHHHHHHHHTCEE
T ss_pred EEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCC-----------CChHHHHHhc-hHhHHHHHcCchh
Confidence 4445554 3466899999999887532 345799999999963 2212221111 1223445678888
Q ss_pred EEcCCCCC----C---------CCCCCC----------CCchhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeCh
Q 004475 558 LAGPSIPI----I---------GEGDKL----------PNDRFVEQLVSSAEAAVEEVVR----RGVADPSRIAVGGHSY 610 (751)
Q Consensus 558 ~~~~~~~~----~---------g~g~~~----------~~~~~~~~~~~d~~~~v~~l~~----~~~id~~~i~l~G~S~ 610 (751)
+.++.... . |.+... ....+...+.+++...|+.--. +...++++.+|.||||
T Consensus 83 v~p~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SM 162 (299)
T 4fol_A 83 VFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISM 162 (299)
T ss_dssp EEECSSCCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTH
T ss_pred hccCCCcceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCc
Confidence 87443111 0 111100 0112344555655555543221 1123457899999999
Q ss_pred HHHHHHHHHHhC--CCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCccccc---CCC-CCCEEEEEcCCCC
Q 004475 611 GAFMTAHLLAHA--PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA---NKI-KKPILIIHGEVDD 684 (751)
Q Consensus 611 GG~~a~~~a~~~--p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~P~li~~G~~D~ 684 (751)
||+.|+.++.++ |+.+.++.+.+|..+....++...............+..+++...+ .+. ..++++-+|+.|.
T Consensus 163 GG~gAl~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~ 242 (299)
T 4fol_A 163 GGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDP 242 (299)
T ss_dssp HHHHHHHHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETTCT
T ss_pred hHHHHHHHHHhCCCCCceEEEEecccccCcccccccccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCCCc
Confidence 999999999985 6788999999998765443332211111111112222333333222 222 3679999999998
Q ss_pred CCCCChH-HHHHHHHHHHhCCCc--EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 685 KVGLFPM-QAERFFDALKGHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 685 ~vp~~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+.+ .. ....+.+++++++.+ ++++..||.+|.+.. +..++++-+.|..++|+
T Consensus 243 f~~--~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 243 FLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp THH--HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred chh--hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 753 11 135688888887765 789999998998654 55777888999988875
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-14 Score=130.53 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=111.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe---EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF---AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +...| ..+...|.++|| .|++ .+.+|+|.+.. ....+..+++..+
T Consensus 3 ~~~vv~~HG~~~-----------~~~~~----~~~~~~l~~~G~~~~~v~~---~d~~g~g~s~~--~~~~~~~~~~~~~ 62 (181)
T 1isp_A 3 HNPVVMVHGIGG-----------ASFNF----AGIKSYLVSQGWSRDKLYA---VDFWDKTGTNY--NNGPVLSRFVQKV 62 (181)
T ss_dssp CCCEEEECCTTC-----------CGGGG----HHHHHHHHHTTCCGGGEEE---CCCSCTTCCHH--HHHHHHHHHHHHH
T ss_pred CCeEEEECCcCC-----------CHhHH----HHHHHHHHHcCCCCccEEE---EecCCCCCchh--hhHHHHHHHHHHH
Confidence 478999999641 11112 245667888998 5888 45556665421 1222333333333
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCccc
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPIT 666 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (751)
++.+ +..+++++||||||.+++.++.++ |++++++|++++......... +. .
T Consensus 63 ~~~~------~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~-~~-------------------~ 116 (181)
T 1isp_A 63 LDET------GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA-LP-------------------G 116 (181)
T ss_dssp HHHH------CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC-CC-------------------C
T ss_pred HHHc------CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc-CC-------------------C
Confidence 3322 346899999999999999999987 889999999998743211100 00 0
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
.....++|+|+++|++|..+| +..++ -...+++++++++|.+.... .++.+.+.+||.+.
T Consensus 117 ~~~~~~~p~l~i~G~~D~~v~--~~~~~---------~~~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 TDPNQKILYTSIYSSADMIVM--NYLSR---------LDGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNGG 176 (181)
T ss_dssp SCTTCCCEEEEEEETTCSSSC--HHHHC---------CBTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTTT
T ss_pred CCCccCCcEEEEecCCCcccc--ccccc---------CCCCcceeeccCchHhhccC--HHHHHHHHHHHhcc
Confidence 011235899999999999998 65321 23468999999999976433 36888889998764
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-14 Score=140.78 Aligned_cols=209 Identities=16% Similarity=0.062 Sum_probs=132.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+- ..|+||++||.+. +...|. .....|+++ |.|++ ++.+|+
T Consensus 17 ~~g~~l~~~~~g----------~~~~vv~lHG~~~-----------~~~~~~----~~~~~L~~~-~~vi~---~D~~G~ 67 (301)
T 3kda_A 17 VDGVKLHYVKGG----------QGPLVMLVHGFGQ-----------TWYEWH----QLMPELAKR-FTVIA---PDLPGL 67 (301)
T ss_dssp ETTEEEEEEEEE----------SSSEEEEECCTTC-----------CGGGGT----TTHHHHTTT-SEEEE---ECCTTS
T ss_pred eCCeEEEEEEcC----------CCCEEEEECCCCc-----------chhHHH----HHHHHHHhc-CeEEE---EcCCCC
Confidence 467777766653 1478999999752 112222 335566666 99999 566677
Q ss_pred CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc--
Q 004475 569 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF-- 643 (751)
Q Consensus 569 g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~-- 643 (751)
|.+... .....+..+|+.++++.+ +.++ +.++||||||.+|+.++.++|++++++|++++.........
T Consensus 68 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 141 (301)
T 3kda_A 68 GQSEPPKTGYSGEQVAVYLHKLARQF------SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFP 141 (301)
T ss_dssp TTCCCCSSCSSHHHHHHHHHHHHHHH------CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSB
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHc------CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchh
Confidence 776433 234566777777777766 2346 99999999999999999999999999999998532110000
Q ss_pred ---------Cc--------cccc---------------------ccchhhH---HHH-----------------Hh----
Q 004475 644 ---------GF--------QTEF---------------------RTLWEAT---NVY-----------------IE---- 661 (751)
Q Consensus 644 ---------~~--------~~~~---------------------~~~~~~~---~~~-----------------~~---- 661 (751)
.+ .... ...+... +.+ ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (301)
T 3kda_A 142 AFTAQGESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNES 221 (301)
T ss_dssp SEETTEECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHH
T ss_pred hhcchhhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccc
Confidence 00 0000 0000000 000 00
Q ss_pred ----cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 662 ----MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 662 ----~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
......+.++++|+|+++|++| ++ ...+..+ .+.-..+++++++++||... .+..+.+.+.+.+|+.
T Consensus 222 ~~~~~~~~~~l~~i~~P~l~i~G~~D--~~--~~~~~~~----~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l~ 292 (301)
T 3kda_A 222 VRQNAELAKTRLQMPTMTLAGGGAGG--MG--TFQLEQM----KAYAEDVEGHVLPGCGHWLP-EECAAPMNRLVIDFLS 292 (301)
T ss_dssp HHHHHHHTTSCBCSCEEEEEECSTTS--CT--THHHHHH----HTTBSSEEEEEETTCCSCHH-HHTHHHHHHHHHHHHT
T ss_pred hhhcccchhhccccCcceEEEecCCC--CC--hhHHHHH----HhhcccCeEEEcCCCCcCch-hhCHHHHHHHHHHHHh
Confidence 0001122378999999999999 44 4554444 33335689999999999875 5667788888888887
Q ss_pred HHhc
Q 004475 738 KYCL 741 (751)
Q Consensus 738 ~~l~ 741 (751)
+.-+
T Consensus 293 ~~~~ 296 (301)
T 3kda_A 293 RGRH 296 (301)
T ss_dssp TSCC
T ss_pred hCch
Confidence 6543
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=145.24 Aligned_cols=210 Identities=10% Similarity=-0.043 Sum_probs=133.7
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+....+-+ .|+||++||.+.. ...|.. ....|+ +.|.|++ ++.+|+
T Consensus 16 ~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~~~----~~~~L~-~~~~vi~---~D~~G~ 66 (302)
T 1mj5_A 16 IKGRRMAYIDEGT----------GDPILFQHGNPTS-----------SYLWRN----IMPHCA-GLGRLIA---CDLIGM 66 (302)
T ss_dssp ETTEEEEEEEESC----------SSEEEEECCTTCC-----------GGGGTT----TGGGGT-TSSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcCC----------CCEEEEECCCCCc-----------hhhhHH----HHHHhc-cCCeEEE---EcCCCC
Confidence 4677776655421 3789999997521 122222 122333 4479999 566677
Q ss_pred CCCCCCc------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 569 GDKLPND------RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 569 g~~~~~~------~~~~~~~~d~~~~v~~l~~~~~id~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
|.+.... ....+..+|+.++++.+ +. .+++++|||+||.+|+.++.++|++++++|++++.......
T Consensus 67 G~S~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (302)
T 1mj5_A 67 GDSDKLDPSGPERYAYAEHRDYLDALWEAL------DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEW 140 (302)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCG
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhh
Confidence 7764432 23556667776666654 23 68999999999999999999999999999999986531100
Q ss_pred c-cC--c---------cc----------ccc--------cch----------------hhHHHH----Hhc---------
Q 004475 642 P-FG--F---------QT----------EFR--------TLW----------------EATNVY----IEM--------- 662 (751)
Q Consensus 642 ~-~~--~---------~~----------~~~--------~~~----------------~~~~~~----~~~--------- 662 (751)
. .. . .. ... ... .....+ ...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T 1mj5_A 141 ADFPEQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV 220 (302)
T ss_dssp GGSCGGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHH
T ss_pred hhhhHHHHHHHHHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhh
Confidence 0 00 0 00 000 000 000000 000
Q ss_pred -----CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 663 -----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 663 -----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.....+.++++|+|+++|++|..+| +..++.+.+.+ .. +++++ +++|... .+....+.+.+.+||.
T Consensus 221 ~~~~~~~~~~l~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~----~~-~~~~~-~~gH~~~-~e~p~~~~~~i~~fl~ 291 (302)
T 1mj5_A 221 VAIARDYAGWLSESPIPKLFINAEPGALTT--GRMRDFCRTWP----NQ-TEITV-AGAHFIQ-EDSPDEIGAAIAAFVR 291 (302)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEEEECSSSS--HHHHHHHTTCS----SE-EEEEE-EESSCGG-GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCCCeEEEEeCCCCCCC--hHHHHHHHHhc----CC-ceEEe-cCcCccc-ccCHHHHHHHHHHHHH
Confidence 1123456789999999999999998 77666555433 34 78888 9999876 5668899999999999
Q ss_pred HHhcC
Q 004475 738 KYCLS 742 (751)
Q Consensus 738 ~~l~~ 742 (751)
.....
T Consensus 292 ~~~~~ 296 (302)
T 1mj5_A 292 RLRPA 296 (302)
T ss_dssp HHSCC
T ss_pred hhccc
Confidence 87653
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=142.08 Aligned_cols=209 Identities=16% Similarity=0.119 Sum_probs=126.9
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 569 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g 569 (751)
+|..+....+-+++ .|+||++||.+. +...|. .....| .++|.|++ ++.+|+|
T Consensus 7 ~g~~l~~~~~g~~~--------~~~vv~lHG~~~-----------~~~~~~----~~~~~L-~~~~~v~~---~D~~G~G 59 (264)
T 3ibt_A 7 NGTLMTYSESGDPH--------APTLFLLSGWCQ-----------DHRLFK----NLAPLL-ARDFHVIC---PDWRGHD 59 (264)
T ss_dssp TTEECCEEEESCSS--------SCEEEEECCTTC-----------CGGGGT----THHHHH-TTTSEEEE---ECCTTCS
T ss_pred CCeEEEEEEeCCCC--------CCeEEEEcCCCC-----------cHhHHH----HHHHHH-HhcCcEEE---EccccCC
Confidence 55566655554422 479999999642 111221 233444 55699999 5666777
Q ss_pred CCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCCcc---
Q 004475 570 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLTPF--- 643 (751)
Q Consensus 570 ~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~~~~--- 643 (751)
.+... .....+..+|+.++++.+ +..++.++||||||.+|+.+|.++ |++++++|++++... ....+
T Consensus 60 ~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~-~~~~~~~~ 132 (264)
T 3ibt_A 60 AKQTDSGDFDSQTLAQDLLAFIDAK------GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQ-PHPGFWQQ 132 (264)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSS-CCHHHHHH
T ss_pred CCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCC-cChhhcch
Confidence 76532 234566677777766654 335899999999999999999999 999999999998651 10000
Q ss_pred --------Ccccc---cccch-------------------hhHHHHH------------hcCcccccCCCCCCEEEEEcC
Q 004475 644 --------GFQTE---FRTLW-------------------EATNVYI------------EMSPITHANKIKKPILIIHGE 681 (751)
Q Consensus 644 --------~~~~~---~~~~~-------------------~~~~~~~------------~~~~~~~~~~~~~P~li~~G~ 681 (751)
..... ....| .....+. .......+.++++|+|++||.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~ 212 (264)
T 3ibt_A 133 LAEGQHPTEYVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIY 212 (264)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEE
T ss_pred hhcccChhhHHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEec
Confidence 00000 00000 0000000 011224567889999999875
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.|...+.+....+.+. +.-...+++++++++|... .+....+.+.+.+||+
T Consensus 213 ~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 213 SQPLSQDYRQLQLEFA----AGHSWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp CCSCCHHHHHHHHHHH----HHCTTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred CCccchhhHHHHHHHH----HhCCCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 5443320033333333 3334579999999999765 5667788888888875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-12 Score=139.84 Aligned_cols=176 Identities=9% Similarity=0.114 Sum_probs=100.9
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-CceeeeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..++|+|||++|+.. . ...+.+||+. ++....+.... +..+......+..++|+|+|
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~-------------d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-D-------------DLRINLWHLEITDRSFNIVDIK-----PANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-C-------------SSEEEEEETTEEEEEEEEEECC-----CSSGGGCCCCEEEEEECSSC
T ss_pred cceEEEEEcCCCCEEEEe-C-------------CCeEEEEECCCCCceeeeeecc-----cccccccCcceEEEEECCCC
Confidence 667899999999988864 2 2368899998 33332221110 11122233456789999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCC-----ceEeEeece------------eEE-EEEecCCceEEEe
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-----PEILHKLDL------------RFS-VSWCDDSLALVNE 315 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~l~~~~~------------~~~-~~~spdg~~l~~~ 315 (751)
..+|+..+ ..+.|.++++. ... ...+..... .+. +.|+|||+.|+..
T Consensus 239 ~~~l~s~~------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 239 CNTFVYSS------------SKGTIRLCDMR---ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp TTEEEEEE------------TTSCEEEEETT---TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEe------------CCCeEEEEECc---CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 44255543 23578888875 222 233433332 567 9999999998865
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccc--------cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCC
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV--------YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF 387 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~ 387 (751)
.. ..|.+.++.........+........ ........++|+|||++|+..+.+
T Consensus 304 ~~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d--------------- 363 (447)
T 3dw8_B 304 DY-----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN--------------- 363 (447)
T ss_dssp ES-----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST---------------
T ss_pred eC-----CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC---------------
Confidence 52 35666666542021222221110000 000001116899999999776632
Q ss_pred CCCCCCceeEEEecCCCceeEEe
Q 004475 388 TPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 388 ~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
..|++||+.+++...+.
T Consensus 364 ------g~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 364 ------NFFRMFDRNTKRDITLE 380 (447)
T ss_dssp ------TEEEEEETTTCCEEEEE
T ss_pred ------CEEEEEEcCCCcceeee
Confidence 37889999888765543
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-15 Score=145.98 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=121.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC------------------CCCCCCC
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII------------------GEGDKLP 573 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~------------------g~g~~~~ 573 (751)
.|+||++||.+. +...|......+...|..+||.|+.++.+... |+|....
T Consensus 5 ~~~vl~lHG~g~-----------~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 73 (243)
T 1ycd_A 5 IPKLLFLHGFLQ-----------NGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRA 73 (243)
T ss_dssp CCEEEEECCTTC-----------CHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEE
T ss_pred CceEEEeCCCCc-----------cHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcc
Confidence 689999999642 11222111113444566679999996654100 2222100
Q ss_pred -CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CceeEEEEccCCCCCCCCccCcc
Q 004475 574 -NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP------HLFCCGIARSGSYNKTLTPFGFQ 646 (751)
Q Consensus 574 -~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~~~~d~~~~~~~~~ 646 (751)
..........|+.++++++.+....+..+|+|+||||||.+|+.++.+.+ ..+++++++++........ ...
T Consensus 74 w~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-~~~ 152 (243)
T 1ycd_A 74 WFYHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-EHP 152 (243)
T ss_dssp SSCCCSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-TST
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-ccc
Confidence 00000011344555666655432223468999999999999999998752 2467788777764311000 000
Q ss_pred cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCccc
Q 004475 647 TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG---ALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~ 723 (751)
.. ..+. ..+. .....+.++++|+|++||++|.++| +..++++++.+...+ ......++++++|.+...
T Consensus 153 ~~--~~~~--~~~~--~~~~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~- 223 (243)
T 1ycd_A 153 GE--LRIT--EKFR--DSFAVKPDMKTKMIFIYGASDQAVP--SVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK- 223 (243)
T ss_dssp TC--EEEC--GGGT--TTTCCCTTCCCEEEEEEETTCSSSC--HHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC-
T ss_pred cc--cccc--hhHH--HhccCcccCCCCEEEEEeCCCCccC--HHHHHHHHHHhhhhccccccccEEEecCCCCcCCch-
Confidence 00 0000 0010 1122356688999999999999999 999999999887641 112344566789987532
Q ss_pred cHHHHHHHHHHHHHHHhcC
Q 004475 724 NVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 724 ~~~~~~~~~~~fl~~~l~~ 742 (751)
..+.+.+.+||++++.+
T Consensus 224 --~~~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 224 --KDIIRPIVEQITSSLQE 240 (243)
T ss_dssp --HHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHhhhh
Confidence 35889999999998864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-13 Score=138.90 Aligned_cols=299 Identities=8% Similarity=0.003 Sum_probs=171.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecC---CcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN---STLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD---g~~l~~~~~~~ 108 (751)
.+...+|||||++++.+...+ .+...|.++++.+++...+..... ...+..++|+|+ |+.|+....+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~------~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~d- 89 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA------RGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFG- 89 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETT-
T ss_pred ceEEEEEcCCCceEEEecCcc------CCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecCC-
Confidence 688999999999888765210 135788999998887655432111 114778999999 6888877432
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC--ceecCCC-ceEEee----
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTP-AVYTAV---- 180 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~--~~~lt~~-~~~~~~---- 180 (751)
..|.++++ +++ ...+..+ ..+..+
T Consensus 90 ------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 90 ------------------------------------------------GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp ------------------------------------------------SCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred ------------------------------------------------CeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 46777787 443 4445444 555555
Q ss_pred --eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eeeeccCCCCCCCCCccCCccCCCceee----eecC
Q 004475 181 --EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSIS----WRAD 252 (751)
Q Consensus 181 --~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~spd 252 (751)
+|+|||+.|+....+ ..+.+||+.++. ...+....... ...+..+. |+|+
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGEN---------KRDCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSC---------CCCEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCC---------CCceEEEEEEeccCCC
Confidence 679999998876543 358899998654 23332222110 11233445 8999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec---CCceEEEeeeecccceeEEEe
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD---DSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp---dg~~l~~~~~~~~~~~~l~~~ 328 (751)
++. ++... ..+.|+++++. .............+. +.|+| +++.|+.+.. ...|.++
T Consensus 180 ~~~-l~~~~------------~d~~i~i~d~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~i~ 239 (357)
T 3i2n_A 180 ERV-VCAGY------------DNGDIKLFDLR---NMALRWETNIKNGVCSLEFDRKDISMNKLVATSL----EGKFHVF 239 (357)
T ss_dssp CCE-EEEEE------------TTSEEEEEETT---TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES----TTEEEEE
T ss_pred CCE-EEEEc------------cCCeEEEEECc---cCceeeecCCCCceEEEEcCCCCCCCCEEEEECC----CCeEEEE
Confidence 997 55543 23588999985 334444445566677 99999 9998887652 2345555
Q ss_pred cCCCCCCcceeee----ecccccccCCCCCCCeeeCCCCC-EEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC
Q 004475 329 CPGSKDVAPRVLF----DRVFENVYSDPGSPMMTRTSTGT-NVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT 403 (751)
Q Consensus 329 ~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~spDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 403 (751)
++.++ .....+. ......+.. ++|+|||+ .|+..+. ...|++||+.+
T Consensus 240 d~~~~-~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~~~~---------------------dg~i~iwd~~~ 291 (357)
T 3i2n_A 240 DMRTQ-HPTKGFASVSEKAHKSTVWQ------VRHLPQNRELFLTAGG---------------------AGGLHLWKYEY 291 (357)
T ss_dssp EEEEE-ETTTEEEEEEEECCSSCEEE------EEEETTEEEEEEEEET---------------------TSEEEEEEEEC
T ss_pred eCcCC-CcccceeeeccCCCcCCEEE------EEECCCCCcEEEEEeC---------------------CCcEEEeecCC
Confidence 55443 1111111 112222222 78999998 4555442 22677778765
Q ss_pred CceeEEeeccch-h----hhhceeee---ecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 404 GSKERIWESNRE-K----YFETAVAL---VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 404 g~~~~l~~~~~~-~----~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
+........++. . .......+ ......++|+|||+.|+++... -+.+.++++.+.
T Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~ 354 (357)
T 3i2n_A 292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKL 354 (357)
T ss_dssp CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC-
T ss_pred CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCc
Confidence 543221111000 0 00000000 1111236899999999876543 246888887653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-13 Score=143.34 Aligned_cols=235 Identities=9% Similarity=0.027 Sum_probs=149.4
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
...++|||||++|+.... ...|+++++.+++..+...... ......|+|||+.|+..+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~----------d~~v~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d----- 118 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARL----------DGHDFLFNTIIRDGSKMLKRAD-----YTAVDTAKLQMRRFILGTTE----- 118 (420)
T ss_dssp CTTCEEEEEETTEEEEEE----------TTEEEEEECCSEETTTTSCSCC-----EEEEEEECSSSCEEEEEETT-----
T ss_pred ccceeeeecCCeEEEEEc----------CCcEEEEEecccceeeEEecCC-----ceEEEEEecCCCEEEEEECC-----
Confidence 357899999999998642 3688888988776555433332 24455799999999887442
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceec-CCC-ceEEeeeeCCCCceE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l-t~~-~~~~~~~~SpDG~~i 189 (751)
..|.++++ +++.... ..+ ..+..++|+|||++|
T Consensus 119 --------------------------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 154 (420)
T 3vl1_A 119 --------------------------------------------GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 154 (420)
T ss_dssp --------------------------------------------SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred --------------------------------------------CCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence 46777888 5544444 344 788999999999988
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
+..+.+ ..+.+||+.+++. ..+.. ....+..++|+|||+. |+..+
T Consensus 155 ~s~s~d-------------~~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~-l~s~~------- 200 (420)
T 3vl1_A 155 ISSSQD-------------MQLKIWSVKDGSNPRTLIG-------------HRATVTDIAIIDRGRN-VLSAS------- 200 (420)
T ss_dssp EEEETT-------------SEEEEEETTTCCCCEEEEC-------------CSSCEEEEEEETTTTE-EEEEE-------
T ss_pred EEEeCC-------------CeEEEEeCCCCcCceEEcC-------------CCCcEEEEEEcCCCCE-EEEEc-------
Confidence 876543 3689999986543 33321 2234668999999997 55543
Q ss_pred ccccCcccceeeccCCCCCCCCc-eEeEe------------------------eceeEE-EEEecCCceEEEeeeecccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKP-EILHK------------------------LDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~-~~l~~------------------------~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
..+.|.++++. .+.. ..+.. ....+. +.|+|||+.|+.+.. .
T Consensus 201 -----~d~~v~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d 268 (420)
T 3vl1_A 201 -----LDGTIRLWECG---TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV----S 268 (420)
T ss_dssp -----TTSCEEEEETT---TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET----T
T ss_pred -----CCCcEEEeECC---CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC----C
Confidence 22467777764 2211 11111 012233 567899998877652 2
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCC-EEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGT-NVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
..|.++++.++ .....+.......+.. ++|+|+|+ .|+..+. ...|++||+
T Consensus 269 g~i~i~d~~~~-~~~~~~~~~~~~~v~~------~~~~~~~~~~l~~g~~---------------------dg~i~vwd~ 320 (420)
T 3vl1_A 269 GVITVHNVFSK-EQTIQLPSKFTCSCNS------LTVDGNNANYIYAGYE---------------------NGMLAQWDL 320 (420)
T ss_dssp SCEEEEETTTC-CEEEEECCTTSSCEEE------EEECSSCTTEEEEEET---------------------TSEEEEEET
T ss_pred CeEEEEECCCC-ceeEEcccccCCCcee------EEEeCCCCCEEEEEeC---------------------CCeEEEEEc
Confidence 35677777664 2222222222222222 88999999 6666652 237899999
Q ss_pred CCCc
Q 004475 402 NTGS 405 (751)
Q Consensus 402 ~~g~ 405 (751)
.+++
T Consensus 321 ~~~~ 324 (420)
T 3vl1_A 321 RSPE 324 (420)
T ss_dssp TCTT
T ss_pred CCCc
Confidence 8764
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=136.31 Aligned_cols=206 Identities=12% Similarity=0.006 Sum_probs=126.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.....- + .|.||++||.+. ....| ......|++ .|.|++ +|.+|+
T Consensus 16 ~~g~~l~y~~~G--~--------g~~lvllHG~~~--------------~~~~w-~~~~~~L~~-~~~via---~Dl~G~ 66 (294)
T 1ehy_A 16 LPDVKIHYVREG--A--------GPTLLLLHGWPG--------------FWWEW-SKVIGPLAE-HYDVIV---PDLRGF 66 (294)
T ss_dssp CSSCEEEEEEEE--C--------SSEEEEECCSSC--------------CGGGG-HHHHHHHHT-TSEEEE---ECCTTS
T ss_pred ECCEEEEEEEcC--C--------CCEEEEECCCCc--------------chhhH-HHHHHHHhh-cCEEEe---cCCCCC
Confidence 466677665542 1 368999999641 11111 123345554 499999 677788
Q ss_pred CCCCCCc------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc
Q 004475 569 GDKLPND------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 569 g~~~~~~------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~ 642 (751)
|.+.... .......+|+.++++.+ ..+++.++||||||.+|+.+|.++|++++++|++++........
T Consensus 67 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~ 140 (294)
T 1ehy_A 67 GDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPV 140 (294)
T ss_dssp TTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---
T ss_pred CCCCCCccccccCcCHHHHHHHHHHHHHHc------CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchh
Confidence 8875542 23456667666666654 23589999999999999999999999999999998632110000
Q ss_pred ----------cC--c-----c-----ccc-----------------ccchhh--HHHHH-----------------hc--
Q 004475 643 ----------FG--F-----Q-----TEF-----------------RTLWEA--TNVYI-----------------EM-- 662 (751)
Q Consensus 643 ----------~~--~-----~-----~~~-----------------~~~~~~--~~~~~-----------------~~-- 662 (751)
+. + . ... ...+.. .+.+. ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (294)
T 1ehy_A 141 YFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIR 220 (294)
T ss_dssp --------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSS
T ss_pred hccchhccCceEEEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHh
Confidence 00 0 0 000 000000 00010 00
Q ss_pred Cccc-----ccCCCCCCEEEEEcCCCCCCCCCh-HHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 663 SPIT-----HANKIKKPILIIHGEVDDKVGLFP-MQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 663 ~~~~-----~~~~~~~P~li~~G~~D~~vp~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.... .+.++++|+|+++|++|..+| . .....+.+.+ ..+++++++++||... .+..+.+.+.+.+||
T Consensus 221 ~~~~~~~~~~l~~i~~P~Lvi~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 221 PDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKYY----SNYTMETIEDCGHFLM-VEKPEIAIDRIKTAF 293 (294)
T ss_dssp SSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHHB----SSEEEEEETTCCSCHH-HHCHHHHHHHHHHHC
T ss_pred hhhhhcCCcccCcCCCCEEEEEeCCCCCcc--hHHHHHHHHHHc----CCCceEEeCCCCCChh-hhCHHHHHHHHHHHh
Confidence 0000 123789999999999999876 4 3344443332 3579999999999865 566778888888886
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=142.44 Aligned_cols=196 Identities=15% Similarity=0.085 Sum_probs=123.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC--CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR--RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. +...| ......|+++ ||.|++ ++.+|+|.+.... ...++++.+.+
T Consensus 36 ~~~vvllHG~~~-----------~~~~~----~~~~~~L~~~~~g~~vi~---~D~~G~G~s~~~~---~~~~~~~~~~l 94 (302)
T 1pja_A 36 YKPVIVVHGLFD-----------SSYSF----RHLLEYINETHPGTVVTV---LDLFDGRESLRPL---WEQVQGFREAV 94 (302)
T ss_dssp CCCEEEECCTTC-----------CGGGG----HHHHHHHHHHSTTCCEEE---CCSSCSGGGGSCH---HHHHHHHHHHH
T ss_pred CCeEEEECCCCC-----------ChhHH----HHHHHHHHhcCCCcEEEE---eccCCCccchhhH---HHHHHHHHHHH
Confidence 578999999641 11111 2455677777 999999 5666777654332 23455555666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCCccCc-----cc----------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLTPFGF-----QT---------------- 647 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~d~~~~~~~~-----~~---------------- 647 (751)
..+.+.. ..++.++||||||.+|+.++.++|+ +++++|++++........... ..
T Consensus 95 ~~~~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (302)
T 1pja_A 95 VPIMAKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQ 171 (302)
T ss_dssp HHHHHHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGG
T ss_pred HHHhhcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHH
Confidence 5555443 3689999999999999999999999 799999998764322110000 00
Q ss_pred --ccccchhh---HHHHHhcC-----------------cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHH-------
Q 004475 648 --EFRTLWEA---TNVYIEMS-----------------PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD------- 698 (751)
Q Consensus 648 --~~~~~~~~---~~~~~~~~-----------------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~------- 698 (751)
.....|.. .+.+.... ....+.+++ |+|+++|++|.++| +..+..+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~--~~~~~~~~~~~~~~~~ 248 (302)
T 1pja_A 172 EFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVIT--PWQSSFFGFYDANETV 248 (302)
T ss_dssp GSTGGGGBCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSS--SGGGGGTCEECTTCCE
T ss_pred HhhhhhcccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccc--hhHhhHhhhcCCcccc
Confidence 00000000 01110000 123456788 99999999999998 776655532
Q ss_pred -----------------HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 699 -----------------ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 699 -----------------~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
.+... .+++++++++++|... .+..+.+.+.+.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 249 LEMEEQLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp ECGGGSHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred cchhhhhhhhhhhhchhhHhhc-CCeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 12222 2489999999999876 556677777777775
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-14 Score=141.48 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=129.0
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCc-cCC-CCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSG-MTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
++.++....+-+++ ...|+||++||.+... .. +.. +.......|+ ++|.|++ ++.+|
T Consensus 19 ~~~~l~y~~~G~~~------~~~p~vvllHG~~~~~-----------~~~~~~~~~~~~~~~L~-~~~~vi~---~D~~G 77 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK------PKRPAIFTYHDVGLNY-----------KSCFQPLFRFGDMQEII-QNFVRVH---VDAPG 77 (286)
T ss_dssp TTEEEEEEEESCCC------TTCCEEEEECCTTCCH-----------HHHHHHHHTSHHHHHHH-TTSCEEE---EECTT
T ss_pred CCeEEEEEeccCCC------CCCCeEEEeCCCCCCc-----------hhhhhhhhhhchhHHHh-cCCCEEE---ecCCC
Confidence 56677777665432 1258999999964110 10 110 0001333444 5799999 45556
Q ss_pred CCCCCC--Cch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 568 EGDKLP--NDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 568 ~g~~~~--~~~----~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
+|.+.. ... ...+..+|+.++++.+ +..++.++||||||.+|+.++.++|++++++|++++.......
T Consensus 78 ~G~s~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 151 (286)
T 2qmq_A 78 MEEGAPVFPLGYQYPSLDQLADMIPCILQYL------NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGW 151 (286)
T ss_dssp TSTTCCCCCTTCCCCCHHHHHHTHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCH
T ss_pred CCCCCCCCCCCCCccCHHHHHHHHHHHHHHh------CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccch
Confidence 654321 211 4566777777777766 2358999999999999999999999999999999986432110
Q ss_pred cc-----------C---------ccccc----ccchhh-------------HHHHH----hcCc----ccccCCCCCCEE
Q 004475 642 PF-----------G---------FQTEF----RTLWEA-------------TNVYI----EMSP----ITHANKIKKPIL 676 (751)
Q Consensus 642 ~~-----------~---------~~~~~----~~~~~~-------------~~~~~----~~~~----~~~~~~~~~P~l 676 (751)
.. . +.... ...... ...+. .... ...+.++++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 231 (286)
T 2qmq_A 152 MDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVM 231 (286)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEE
T ss_pred hhhhhhhhccccccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEE
Confidence 00 0 00000 000000 00000 0011 123567899999
Q ss_pred EEEcCCCCCCCCChHHHHHHHHHHHhCCC-cEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 677 IIHGEVDDKVGLFPMQAERFFDALKGHGA-LSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 677 i~~G~~D~~vp~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+++|++|..+| . . .+.+..... .++++++++++|... .+....+.+.+.+||.
T Consensus 232 ii~G~~D~~~~--~-~----~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 232 LVVGDQAPHED--A-V----VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp EEEETTSTTHH--H-H----HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred EEecCCCcccc--H-H----HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 99999999874 2 2 333344333 689999999999875 4557788888899884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=152.06 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=155.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+|++.+ |+...... .....+..++|||||++||... ..+.|.++++.+++..........
T Consensus 35 g~v~iwd~~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~- 98 (814)
T 3mkq_A 35 GRVEIWNYET----QVEVRSIQ-VTETPVRAGKFIARKNWIIVGS----------DDFRIRVFNYNTGEKVVDFEAHPD- 98 (814)
T ss_dssp SEEEEEETTT----TEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE----------TTSEEEEEETTTCCEEEEEECCSS-
T ss_pred CEEEEEECCC----CceEEEEe-cCCCcEEEEEEeCCCCEEEEEe----------CCCeEEEEECCCCcEEEEEecCCC-
Confidence 4689999987 76544321 2233688999999999999963 346888999888875443322211
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.+..++|+|||+.|+..+.+ ..|.++++
T Consensus 99 ---~v~~~~~s~~~~~l~~~~~d-------------------------------------------------g~i~vw~~ 126 (814)
T 3mkq_A 99 ---YIRSIAVHPTKPYVLSGSDD-------------------------------------------------LTVKLWNW 126 (814)
T ss_dssp ---CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEEG
T ss_pred ---CEEEEEEeCCCCEEEEEcCC-------------------------------------------------CEEEEEEC
Confidence 37789999999999877432 46677777
Q ss_pred -CC-C-ceecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 165 -DG-T-AKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 -~G-~-~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++ . ...+..+ ..+..++|+| ||+.|+....+ ..+.+|++.++.........
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~----------- 182 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTG----------- 182 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-------------SEEEEEETTCSSCSEEEECC-----------
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCcceeEEecC-----------
Confidence 33 2 3344444 6788999999 88887776443 36889998765433221111
Q ss_pred ccCCCceeeeec--CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 240 VREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 240 ~~~~~~~~~~sp--dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
....+..+.|+| ||+. ++... ..+.|.++++.. +.....+......+. +.|+|+|+.|+...
T Consensus 183 ~~~~v~~~~~~~~~~~~~-l~~~~------------~dg~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPY-MITAS------------DDLTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp CTTCCCEEEECCSTTCCE-EEEEC------------TTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCEEEEEEEECCCCCE-EEEEe------------CCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 113355789999 8887 55533 235788888751 223334444556677 99999999887765
Q ss_pred eecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEE
Q 004475 317 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l 366 (751)
. ...|.+.+..++ ............++. ++|+|+|+.+
T Consensus 248 ~----dg~v~vwd~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~~ 285 (814)
T 3mkq_A 248 E----DGTLKIWNSSTY--KVEKTLNVGLERSWC------IATHPTGRKN 285 (814)
T ss_dssp T----TSCEEEEETTTC--SEEEEECCSSSSEEE------EEECTTCGGG
T ss_pred C----CCeEEEEECCCC--cEEEEeecCCCcEEE------EEEccCCCce
Confidence 2 235666777664 222222222222333 7899999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=133.84 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=146.8
Q ss_pred cceeEEeecCCCCCCC---Cc-ccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 4 FTGIGIHRLLPDDSLG---PE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g---~~-~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
...|.+|++......+ .. +.+. .....+...+|||||+.|+..+ ....|.++++.+++......
T Consensus 48 D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~~~l~s~s----------~D~~v~lwd~~~~~~~~~~~ 115 (343)
T 2xzm_R 48 DKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALSQENCFAISSS----------WDKTLRLWDLRTGTTYKRFV 115 (343)
T ss_dssp TSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEECSSTTEEEEEE----------TTSEEEEEETTSSCEEEEEE
T ss_pred CCEEEEEECCcCCcccccccccchhc--cCCCceEEEEECCCCCEEEEEc----------CCCcEEEEECCCCcEEEEEc
Confidence 3468999997611111 11 1222 1223578899999999988753 34678888998887543322
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
+... .+..++|+|||+.|+..+.+ ..|
T Consensus 116 ~h~~----~v~~v~~sp~~~~l~s~~~d-------------------------------------------------~~i 142 (343)
T 2xzm_R 116 GHQS----EVYSVAFSPDNRQILSAGAE-------------------------------------------------REI 142 (343)
T ss_dssp CCCS----CEEEEEECSSTTEEEEEETT-------------------------------------------------SCE
T ss_pred CCCC----cEEEEEECCCCCEEEEEcCC-------------------------------------------------CEE
Confidence 2211 37789999999999877432 356
Q ss_pred EEEcCCCCc-eecC---CC-ceEEeeeeCCCC----------ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 160 VLGSLDGTA-KDFG---TP-AVYTAVEPSPDQ----------KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 160 ~~~~~~G~~-~~lt---~~-~~~~~~~~SpDG----------~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
.++|+.++. ..+. .+ ..+..++|+|++ .+|+..+. ...+.+||........+
T Consensus 143 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~~~~ 209 (343)
T 2xzm_R 143 KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-------------DGRLKVWNTNFQIRYTF 209 (343)
T ss_dssp EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-------------TSEEEEEETTTEEEEEE
T ss_pred EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC-------------CCEEEEEcCCCceeEEE
Confidence 666774422 2221 22 567889999998 44544332 34688999655433333
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-E
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-V 303 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~ 303 (751)
..+ ...+..++|+|||++ |+..+ ..+.|.++++.. .............+. +
T Consensus 210 ~~h-------------~~~v~~~~~s~~g~~-l~sgs------------~dg~v~iwd~~~--~~~~~~~~~~~~~v~~v 261 (343)
T 2xzm_R 210 KAH-------------ESNVNHLSISPNGKY-IATGG------------KDKKLLIWDILN--LTYPQREFDAGSTINQI 261 (343)
T ss_dssp ECC-------------SSCEEEEEECTTSSE-EEEEE------------TTCEEEEEESSC--CSSCSEEEECSSCEEEE
T ss_pred cCc-------------cccceEEEECCCCCE-EEEEc------------CCCeEEEEECCC--CcccceeecCCCcEEEE
Confidence 222 233568999999998 55543 235788888731 222222223344566 9
Q ss_pred EEecCCceEEEeeeecccceeEEEecCCCCCCcce-eeeecccccc---cCC-CCCCCeeeCCCCCEEEEee
Q 004475 304 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR-VLFDRVFENV---YSD-PGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 304 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~l~~~~~~~~---~~~-~~~~~~~~spDG~~l~~~~ 370 (751)
+|+|+++.|+.+. .. .+.+.++.++..... .+........ ... .....++|+|||+.|+..+
T Consensus 262 ~~sp~~~~la~~~---d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 262 AFNPKLQWVAVGT---DQ--GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EECSSSCEEEEEE---SS--CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred EECCCCCEEEEEC---CC--CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 9999999876543 22 344455544311111 1110000000 000 0011278999999998877
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-12 Score=135.02 Aligned_cols=296 Identities=10% Similarity=0.019 Sum_probs=171.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||..+ ....|.++++.+++.......... .+..++|+|||+.|+..+.+
T Consensus 68 ~V~~~~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~~~~~h~~----~v~~~~~s~~g~~las~~~d---- 129 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSAS----------QDGRLIVWNALTSQKTHAIKLHCP----WVMECAFAPNGQSVACGGLD---- 129 (380)
T ss_dssp CEEEEEECTTSSCEEEEE----------TTSEEEEEETTTTEEEEEEECCCT----TCCCCEECTTSSEEEECCSS----
T ss_pred EEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCccceEEecCCC----CEEEEEECCCCCEEEEeeCC----
Confidence 688999999999998863 346788889888765443322221 36788999999999876432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-C-----C--C-ceecCCC-ceEEeee
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D-----G--T-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----G--~-~~~lt~~-~~~~~~~ 181 (751)
..+.++++ + + . .+.+..+ ..+..+.
T Consensus 130 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 130 ---------------------------------------------SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp ---------------------------------------------SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred ---------------------------------------------CcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 22333343 1 1 1 1223334 5677889
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec-CCCceEEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWV 260 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~ 260 (751)
|+|++...+++... ...+.+||+.+++.......... ......+..+.|+| +++. ++..
T Consensus 165 ~~~~~~~~l~s~s~------------D~~i~~wd~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~-l~sg 224 (380)
T 3iz6_a 165 YVPDQETRLITGSG------------DQTCVLWDVTTGQRISIFGSEFP-------SGHTADVLSLSINSLNANM-FISG 224 (380)
T ss_dssp CCSSSSSCEEEECT------------TSCEEEECTTTCCEEEEECCCSS-------SSCCSCEEEEEECSSSCCE-EEEE
T ss_pred EecCCCCEEEEECC------------CCcEEEEEcCCCcEEEEeecccC-------CCCccCeEEEEeecCCCCE-EEEE
Confidence 99987554444322 34688999987754433221111 11123355788877 6664 4443
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
+ ..+.|.++|+. .++.....+......+. +.|+|||+.|+.++. ...|.+.|+.++ ....
T Consensus 225 s------------~D~~v~~wd~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~~~~--~~~~ 285 (380)
T 3iz6_a 225 S------------CDTTVRLWDLR-ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFDMRTG--HQLQ 285 (380)
T ss_dssp E------------TTSCEEEEETT-TTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEETTTT--EEEE
T ss_pred E------------CCCeEEEEECC-CCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEECCCC--cEEE
Confidence 3 23578888874 12234445555566677 999999998887652 235666677664 2222
Q ss_pred eeeccccccc-CCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhh
Q 004475 340 LFDRVFENVY-SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 418 (751)
Q Consensus 340 l~~~~~~~~~-~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 418 (751)
.......... ..+....++|+|||+.|+.... ...|++||+.+++.......-..
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---------------------dg~i~vwd~~~~~~~~~~~~~~~--- 341 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---------------------NGDCYVWDTLLAEMVLNLGTLQN--- 341 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECT---------------------TSCEEEEETTTCCEEEEECCSCS---
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEEC---------------------CCCEEEEECCCCceEEEEecccC---
Confidence 2221111000 0001122789999998887762 23788999987765433211000
Q ss_pred hceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 419 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 419 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
........++|||||+.|+-. .. -..+.++++.++
T Consensus 342 ----~h~~~v~~l~~s~dg~~l~sg-s~---D~~i~iW~~~~~ 376 (380)
T 3iz6_a 342 ----SHEGRISCLGLSSDGSALCTG-SW---DKNLKIWAFSGH 376 (380)
T ss_dssp ----SCCCCCCEEEECSSSSEEEEE-CT---TSCEEEEECCSS
T ss_pred ----CCCCceEEEEECCCCCEEEEe-eC---CCCEEEEecCCC
Confidence 001112336899999976643 22 234777777654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-14 Score=149.41 Aligned_cols=243 Identities=10% Similarity=-0.007 Sum_probs=150.6
Q ss_pred cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 30 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
...+...+|||||++||..+ ..+.+.+++.++ ....+. .....-...+..++|||||++|+..+.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s----------~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-- 150 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLS----------NNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-- 150 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEE----------TTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT--
T ss_pred CCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC--
Confidence 44689999999999999874 335566677543 223332 1110001137799999999999988543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc--------eec----CCC-c
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--------KDF----GTP-A 175 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~--------~~l----t~~-~ 175 (751)
+.|.++++ +|.. ..+ ..+ .
T Consensus 151 -----------------------------------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 151 -----------------------------------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp -----------------------------------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred -----------------------------------------------CEEEEEECCCCccccccceeeeeeecccccccc
Confidence 46777777 4432 333 222 5
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee----eeccCCCCCCCCCccCCccCCCceeeeec
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR----ELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~sp 251 (751)
.+..++||||| |+..+.+ ..+++|+++++... .+... ....+..++|+
T Consensus 184 ~V~sVawSPdg--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~~~------------h~~~V~svaFs- 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQNA------------SRRKITDLKIV- 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETT-------------CCEEEECCCSSSSCCCEEEEECC------------CSSCCCCEEEE-
T ss_pred cEEEEEEcCCc--EEEEeCC-------------CeEEEEECCCCccccceeeeccc------------ccCcEEEEEEE-
Confidence 78899999999 5544333 35889999876532 12111 11235688999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-eeceeEE-EEE--ecCCceEEEeeeecccceeEEE
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS-VSW--CDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~-~~~--spdg~~l~~~~~~~~~~~~l~~ 327 (751)
|+. |+.+. .+.|.+++++ ++....+. .....+. ++| |||++.|+.+.+ ++. +||.
T Consensus 236 -g~~-LASa~-------------~~tIkLWd~~---~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e--dG~-klw~ 294 (588)
T 2j04_A 236 -DYK-VVLTC-------------PGYVHKIDLK---NYSISSLKTGSLENFHIIPLNHEKESTILLMSNK--TSY-KVLL 294 (588)
T ss_dssp -TTE-EEEEC-------------SSEEEEEETT---TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSS--CEE-EEEE
T ss_pred -CCE-EEEEe-------------CCeEEEEECC---CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC--CCC-EEEe
Confidence 555 44432 1578999885 44442333 3444455 899 999988776552 233 6887
Q ss_pred ecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 328 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
.+ . ++++|||..+++.. ..+++|+..+++..
T Consensus 295 ~d-----------------~---------~~~spd~~l~a~~d-----------------------~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 295 ED-----------------E---------LHVTADNIIAPYLE-----------------------KKFKKWSTIWNEFN 325 (588)
T ss_dssp SS-----------------S---------EEEECCCSSHHHHH-----------------------HHHHHTTTTTTSSS
T ss_pred ec-----------------c---------EEECCCceEEEEcC-----------------------CEEEEEECCCCcee
Confidence 65 1 55899998877752 15667777655432
Q ss_pred EEeeccchhhhhceeeeecCCcceeeccCCCEEEEEE
Q 004475 408 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 444 (751)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 444 (751)
.+ ... .. .+.+++||||+.++..+
T Consensus 326 ~~-~~~---------~~---I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 326 NY-ETT---------LV---IHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SS-CCE---------EE---EEEEEECTTSSEEEEEE
T ss_pred ee-ccc---------eE---EEEEEECCCCCEEEEEE
Confidence 11 111 11 12368999999888664
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-13 Score=135.99 Aligned_cols=252 Identities=11% Similarity=0.085 Sum_probs=148.9
Q ss_pred cceeEEeecCCCCCCCCcc---cccCCC-CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 4 FTGIGIHRLLPDDSLGPEK---EVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~---~l~~~~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
...|.+|++.+ ...+ .+..+. ....+...+|||||++|+..+ ....|.++++.+++..+...
T Consensus 39 D~~v~~W~~~~----~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s----------~D~~v~~wd~~~~~~~~~~~ 104 (319)
T 3frx_A 39 DKTLISWKLTG----DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS----------WDKTLRLWDVATGETYQRFV 104 (319)
T ss_dssp TSEEEEEEEEE----ETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTTEEEEEEE
T ss_pred CccEEEecCCC----CCccccccceEEeCCcccEEEEEECCCCCEEEEEe----------CCCEEEEEECCCCCeeEEEc
Confidence 34688898865 3221 111111 223578889999999998863 34678888998887544332
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
+... .+..++|+|+++.|+..+.+ ..|
T Consensus 105 ~h~~----~v~~~~~~~~~~~l~s~s~D-------------------------------------------------~~i 131 (319)
T 3frx_A 105 GHKS----DVMSVDIDKKASMIISGSRD-------------------------------------------------KTI 131 (319)
T ss_dssp CCSS----CEEEEEECTTSCEEEEEETT-------------------------------------------------SCE
T ss_pred cCCC----cEEEEEEcCCCCEEEEEeCC-------------------------------------------------CeE
Confidence 2221 37789999999998877543 356
Q ss_pred EEEcCCC-CceecCCC-ceEEeeeeCCCCc------eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 160 VLGSLDG-TAKDFGTP-AVYTAVEPSPDQK------YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 160 ~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~------~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
.++++.+ ....+..+ ..+..+.|+|+++ .|+.... ...+.+||+.+.+.....
T Consensus 132 ~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-------------d~~i~~wd~~~~~~~~~~------ 192 (319)
T 3frx_A 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------DKMVKAWNLNQFQIEADF------ 192 (319)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEET-------------TSCEEEEETTTTEEEEEE------
T ss_pred EEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC-------------CCEEEEEECCcchhheee------
Confidence 6677755 34444444 6778889998543 5554433 346889999876543211
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCc
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
......+..++|+|||+. |+..+ ..+.|.++++. .............+. ++|+|||.
T Consensus 193 ------~~h~~~v~~~~~sp~g~~-l~s~~------------~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 193 ------IGHNSNINTLTASPDGTL-IASAG------------KDGEIMLWNLA---AKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp ------CCCCSCEEEEEECTTSSE-EEEEE------------TTCEEEEEETT---TTEEEEEEECCSCEEEEEECSSSS
T ss_pred ------cCCCCcEEEEEEcCCCCE-EEEEe------------CCCeEEEEECC---CCcEEEEecCCCcEEEEEEcCCCC
Confidence 112234568999999997 55543 33578899885 222222223344566 99999999
Q ss_pred eEEEeeeecccceeEEEecCCCCCCcceeeeeccccccc--CCCCCCCeeeCCCCCEEEEee
Q 004475 311 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY--SDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~spDG~~l~~~~ 370 (751)
.|+.... ....+|.++ .. .............. .......++|||||++|+..+
T Consensus 251 ~la~~~~---~~i~v~~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 251 WLAAATA---TGIKVFSLD--PQ--YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EEEEEET---TEEEEEEET--TE--EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcC---CCcEEEEeC--cC--eeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 9887652 223455443 32 11111111100000 000011278999999998877
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=131.49 Aligned_cols=282 Identities=7% Similarity=0.033 Sum_probs=163.4
Q ss_pred cccceeecCCC-CeEEEEEeecccccccCCceeEEEEEcCCCCe------eeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEA------KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG-~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~------~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+|||++ +.|+..+ ....|.++++.+.+. +.+..... .+..++|+|||++|+..
T Consensus 19 ~V~~l~~~~~~~~~l~s~s----------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSAS----------RDKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEECSSCTTEEEEEE----------TTSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEE
T ss_pred eEEEEEccCCCccEEEEec----------CCccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEE
Confidence 57889999987 4555532 224555555543221 12221111 36788999999999877
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~ 181 (751)
+.+ ..|.++|+ +|+ .+.+..+ ..+..++
T Consensus 84 s~D-------------------------------------------------~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 84 SWD-------------------------------------------------KTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp ETT-------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred eCC-------------------------------------------------CEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 543 47888888 673 4455555 7788999
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC------c
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP------S 255 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~------~ 255 (751)
|+|+|+.|+..+.+ ..+.+||+.+.....+..+. ..+..+.|+|+++ .
T Consensus 115 ~~~~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 115 IDKKASMIISGSRD-------------KTIKVWTIKGQCLATLLGHN-------------DWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ECTTSCEEEEEETT-------------SCEEEEETTSCEEEEECCCS-------------SCEEEEEECCC------CCE
T ss_pred EcCCCCEEEEEeCC-------------CeEEEEECCCCeEEEEeccC-------------CcEEEEEEccCCCCCCCccE
Confidence 99999998876544 35889999876555443222 2245678888543 3
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
++..+ ..+.|.++++.. ......+......+. +.|+|||+.|+.... ...|.+.++.++
T Consensus 169 -l~s~~------------~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~- 228 (319)
T 3frx_A 169 -IISAG------------NDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAK- 228 (319)
T ss_dssp -EEEEE------------TTSCEEEEETTT--TEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTT-
T ss_pred -EEEEe------------CCCEEEEEECCc--chhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC-
Confidence 33332 235788888751 112223334455677 999999998887652 245666777664
Q ss_pred CcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 335 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
........ ...+.. ++|+|||..|+..... .+.+|+++++..........
T Consensus 229 -~~~~~~~~-~~~v~~------~~~sp~~~~la~~~~~----------------------~i~v~~~~~~~~~~~~~~~~ 278 (319)
T 3frx_A 229 -KAMYTLSA-QDEVFS------LAFSPNRYWLAAATAT----------------------GIKVFSLDPQYLVDDLRPEF 278 (319)
T ss_dssp -EEEEEEEC-CSCEEE------EEECSSSSEEEEEETT----------------------EEEEEEETTEEEEEEECCCC
T ss_pred -cEEEEecC-CCcEEE------EEEcCCCCEEEEEcCC----------------------CcEEEEeCcCeeeeccCccc
Confidence 22222211 122222 8899999988876621 46667776544322221110
Q ss_pred hhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 415 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
... ..........++|||||+.|+... .. +.|.++++.+
T Consensus 279 ~~~---~~~~~~~v~~~~~spdg~~l~sg~-~D---g~i~vWd~~t 317 (319)
T 3frx_A 279 AGY---SKAAEPHAVSLAWSADGQTLFAGY-TD---NVIRVWQVMT 317 (319)
T ss_dssp TTC---CGGGCCCEEEEEECTTSSEEEEEE-TT---SCEEEEEEEE
T ss_pred ccc---ccCcCcceeEEEECCCCCEEEEee-cC---ceEEEEEEee
Confidence 000 000000111368999999887543 22 3466666543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-12 Score=133.46 Aligned_cols=266 Identities=11% Similarity=0.090 Sum_probs=160.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||..+ ....|.+++..+++.......... .+..++|+|||+.|+....+
T Consensus 66 ~V~~~~~s~d~~~l~s~s----------~Dg~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~~lasg~~d---- 127 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSS----------QDGKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGCAIACGGLD---- 127 (354)
T ss_dssp CEEEEEECTTSSEEEEEE----------TTSEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSSEEEEESTT----
T ss_pred eEEEEEECCCCCEEEEEe----------CCCeEEEEECCCCCcceEEecCCC----CEEEEEECCCCCEEEEeeCC----
Confidence 588999999999998863 346788888877764433222221 36788999999999877432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CC------CceecCCC-ceEEeeee
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG------TAKDFGTP-AVYTAVEP 182 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G------~~~~lt~~-~~~~~~~~ 182 (751)
..+.++++ .. ....+..+ ..+..+.|
T Consensus 128 ---------------------------------------------~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 128 ---------------------------------------------NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp ---------------------------------------------SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred ---------------------------------------------CCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 23333333 11 11222223 56788999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeec--CCCceEEE
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRA--DKPSTLYW 259 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~sp--dG~~~i~~ 259 (751)
+||++.|+..+.+ ..+.+||+++++.. .+..+ ...+..+.|+| +|+. ++.
T Consensus 163 ~~~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~g~~-l~s 215 (354)
T 2pbi_B 163 TNSDMQILTASGD-------------GTCALWDVESGQLLQSFHGH-------------GADVLCLDLAPSETGNT-FVS 215 (354)
T ss_dssp CSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEECC-------------SSCEEEEEECCCSSCCE-EEE
T ss_pred eCCCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEcCC-------------CCCeEEEEEEeCCCCCE-EEE
Confidence 9999998876543 36889999876543 22221 12244667766 5665 444
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcce
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 338 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 338 (751)
.+ ..+.+.++++.. +.....+......+. ++|+|+|+.|+..+. . ..|.+.++... ...
T Consensus 216 gs------------~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D--~~v~lwd~~~~--~~~ 275 (354)
T 2pbi_B 216 GG------------CDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSD--D--ATCRLYDLRAD--REV 275 (354)
T ss_dssp EE------------TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEET--T--SCEEEEETTTT--EEE
T ss_pred Ee------------CCCeEEEEECCC--CcEEEEecCCCCCeEEEEEeCCCCEEEEEeC--C--CeEEEEECCCC--cEE
Confidence 33 235788888751 222333444556677 999999998877652 2 34555566553 112
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhh
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 418 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 418 (751)
.+....... .....++|+|||+.|+....+ ..|.+||+.+++..........
T Consensus 276 ~~~~~~~~~----~~~~~~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~l~~h~~--- 327 (354)
T 2pbi_B 276 AIYSKESII----FGASSVDFSLSGRLLFAGYND---------------------YTINVWDVLKGSRVSILFGHEN--- 327 (354)
T ss_dssp EEECCTTCC----SCEEEEEECTTSSEEEEEETT---------------------SCEEEEETTTCSEEEEECCCSS---
T ss_pred EEEcCCCcc----cceeEEEEeCCCCEEEEEECC---------------------CcEEEEECCCCceEEEEECCCC---
Confidence 222111100 001117799999988887732 2788999987765433322111
Q ss_pred hceeeeecCCcceeeccCCCEEEEE
Q 004475 419 ETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 419 ~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
.+. .++|||||+.|+..
T Consensus 328 -~v~-------~l~~spdg~~l~sg 344 (354)
T 2pbi_B 328 -RVS-------TLRVSPDGTAFCSG 344 (354)
T ss_dssp -CEE-------EEEECTTSSCEEEE
T ss_pred -cEE-------EEEECCCCCEEEEE
Confidence 122 25899999977754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-12 Score=133.06 Aligned_cols=248 Identities=10% Similarity=0.066 Sum_probs=151.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~ 81 (751)
...|.+||+.+ ++....... ....+...+|||||++||... ....+.++++.+++. +......
T Consensus 76 Dg~v~iWd~~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~----------~d~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 76 DGKLIIWDSYT----TNKVHAIPL-RSSWVMTCAYAPSGNYVACGG----------LDNICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp TTEEEEEETTT----CCEEEEEEC-SSSCEEEEEECTTSSEEEEEE----------TTCEEEEEETTTCSBSCEEEEEEE
T ss_pred CCcEEEEECCC----CCcceEeec-CCccEEEEEECCCCCEEEEEe----------CCCeEEEEECccCCCcceeEEEec
Confidence 34689999877 665443211 222577889999999998853 335677777766531 1111101
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+ ...+..+.|+|+++ |+..+.+ ..|.+
T Consensus 141 ~h--~~~v~~~~~~~~~~-l~s~s~d-------------------------------------------------~~i~~ 168 (340)
T 1got_B 141 GH--TGYLSCCRFLDDNQ-IVTSSGD-------------------------------------------------TTCAL 168 (340)
T ss_dssp CC--SSCEEEEEEEETTE-EEEEETT-------------------------------------------------SCEEE
T ss_pred CC--CccEEEEEECCCCc-EEEEECC-------------------------------------------------CcEEE
Confidence 11 11366789999997 5444321 46777
Q ss_pred EcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+|+ +|+ ...+..+ ..+..++|+|||+.|+..+.+ ..+.+||+.++...... .
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~------------~ 223 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD-------------ASAKLWDVREGMCRQTF------------T 223 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCSEEEEE------------C
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC-------------CcEEEEECCCCeeEEEE------------c
Confidence 888 663 3445545 778899999999988765443 35889999766433211 1
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec---eeEE-EEEecCCceEEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---LRFS-VSWCDDSLALVN 314 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---~~~~-~~~spdg~~l~~ 314 (751)
.....+..++|+|||+. ++..+ ..+.|.++++. ........... ..+. ++|+|||+.|+.
T Consensus 224 ~h~~~v~~v~~~p~~~~-l~s~s------------~d~~v~iwd~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 224 GHESDINAICFFPNGNA-FATGS------------DDATCRLFDLR---ADQELMTYSHDNIICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEE------------TTSCEEEEETT---TTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCcCCEEEEEEcCCCCE-EEEEc------------CCCcEEEEECC---CCcEEEEEccCCcccceEEEEECCCCCEEEE
Confidence 12233668999999997 55543 23578888874 22211111111 2456 899999998887
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.. ...|.+.+..++ ............+.. ++|+|||+.|+..+.
T Consensus 288 g~~----d~~i~vwd~~~~--~~~~~~~~h~~~v~~------~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 288 GYD----DFNCNVWDALKA--DRAGVLAGHDNRVSC------LGVTDDGMAVATGSW 332 (340)
T ss_dssp EET----TSEEEEEETTTC--CEEEEEECCSSCEEE------EEECTTSSCEEEEET
T ss_pred ECC----CCeEEEEEcccC--cEeeEeecCCCcEEE------EEEcCCCCEEEEEcC
Confidence 652 245666776663 222222222222322 789999999988873
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-12 Score=134.23 Aligned_cols=216 Identities=6% Similarity=-0.053 Sum_probs=122.3
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCccCCCceeeeecC-
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRAD- 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~spd- 252 (751)
..+..++|+|||++|++... ...+++|++.++.... .. ..+......+..++|+||
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~-------------~g~v~~~~~~~~~~~~~~~---------~~~~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADK-------------FGDVYSIDINSIPEEKFTQ---------EPILGHVSMLTDVHLIKDS 207 (450)
T ss_dssp SCEEEEEECTTSSEEEEEET-------------TSEEEEEETTSCCCSSCCC---------CCSEECSSCEEEEEEEECT
T ss_pred CCceEEEEcCCCCEEEEEeC-------------CCcEEEEecCCcccccccc---------eeeecccCceEEEEEcCCC
Confidence 66789999999999988643 2368899987654331 00 011112234678999999
Q ss_pred --CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeeceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 253 --KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 253 --G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
|+. |+..+ ..+.|+++++.. +..... +......+. +.|+ ||+.|+... ....|.+.
T Consensus 208 ~~~~~-l~s~~------------~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~----~d~~v~vw 267 (450)
T 2vdu_B 208 DGHQF-IITSD------------RDEHIKISHYPQ--CFIVDKWLFGHKHFVSSICCG-KDYLLLSAG----GDDKIFAW 267 (450)
T ss_dssp TSCEE-EEEEE------------TTSCEEEEEESC--TTCEEEECCCCSSCEEEEEEC-STTEEEEEE----SSSEEEEE
T ss_pred CCCcE-EEEEc------------CCCcEEEEECCC--CceeeeeecCCCCceEEEEEC-CCCEEEEEe----CCCeEEEE
Confidence 776 55543 235788888751 222333 334455667 9999 999988765 23467777
Q ss_pred cCCCCCCcceeeeecc--cccc-c---------------C-CCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 329 CPGSKDVAPRVLFDRV--FENV-Y---------------S-DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~--~~~~-~---------------~-~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
++.++ ......... .... . . ......++|+|||+.|++...
T Consensus 268 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------ 327 (450)
T 2vdu_B 268 DWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE------------------ 327 (450)
T ss_dssp ETTTC--CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET------------------
T ss_pred ECCCC--cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC------------------
Confidence 87774 222222110 0000 0 0 000012679999999888771
Q ss_pred CCCCceeEEEec--CCC-ceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCC------eEEEEEcCC
Q 004475 390 EGNIPFLDLFDI--NTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT------QYHILSWPL 460 (751)
Q Consensus 390 ~~~~~~l~~~d~--~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~------~l~~~~~~~ 460 (751)
....|.+|++ .++ ....+-..... .....++|+|+ .++++..+...+. .+|.++..+
T Consensus 328 --~d~~i~iw~~~~~~~~~l~~~~~~~~~----------~~v~~~~~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 328 --ATKCIIILEMSEKQKGDLALKQIITFP----------YNVISLSAHND--EFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp --TCSEEEEEEECSSSTTCEEEEEEEECS----------SCEEEEEEETT--EEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred --CCCeEEEEEeccCCCCceeeccEeccC----------CceEEEEecCC--cEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 1236788888 443 22222111100 11122578884 4555655555454 788888877
Q ss_pred CceeEee
Q 004475 461 KKSSQIT 467 (751)
Q Consensus 461 g~~~~lt 467 (751)
++.+ ++
T Consensus 394 ~~~~-~~ 399 (450)
T 2vdu_B 394 NSFV-VN 399 (450)
T ss_dssp TEEE-EC
T ss_pred CeEE-Ec
Confidence 7653 55
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=136.89 Aligned_cols=246 Identities=17% Similarity=0.130 Sum_probs=159.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+||+.+ |+...... .....+...+|+|||+.|+..+ ....|.++++.+++..+...+...
T Consensus 130 g~i~vwd~~~----~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs----------~D~~i~iwd~~~~~~~~~~~~h~~- 193 (410)
T 1vyh_C 130 ATIKVWDYET----GDFERTLK-GHTDSVQDISFDHSGKLLASCS----------ADMTIKLWDFQGFECIRTMHGHDH- 193 (410)
T ss_dssp SCEEEEETTT----CCCCEEEC-CCSSCEEEEEECTTSSEEEEEE----------TTSCCCEEETTSSCEEECCCCCSS-
T ss_pred CeEEEEECCC----CcEEEEEe-ccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceeEEEcCCCC-
Confidence 4789999988 76654321 1223588899999999888753 335677778888775443332221
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.+..++|+|||+.|+..+.+ ..|.++|+
T Consensus 194 ---~V~~v~~~p~~~~l~s~s~D-------------------------------------------------~~i~~wd~ 221 (410)
T 1vyh_C 194 ---NVSSVSIMPNGDHIVSASRD-------------------------------------------------KTIKMWEV 221 (410)
T ss_dssp ---CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEET
T ss_pred ---CEEEEEEeCCCCEEEEEeCC-------------------------------------------------CeEEEEEC
Confidence 47889999999998877542 46788888
Q ss_pred -CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCc
Q 004475 165 -DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 165 -~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~ 240 (751)
+|. ...+..+ ..+..+.|+|||+.|+..+.+ ..+.+||+.+++... +..+
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D-------------~~v~vwd~~~~~~~~~~~~h------------- 275 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREH------------- 275 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCC-------------
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCceeeEecCC-------------
Confidence 663 4455555 678889999999988876543 358899998765432 2111
Q ss_pred cCCCceeeeecCC--------------------CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee
Q 004475 241 REGMRSISWRADK--------------------PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300 (751)
Q Consensus 241 ~~~~~~~~~spdG--------------------~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 300 (751)
...+..+.|+|++ +. ++..+ ..+.|.++++.. +.....+......
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~sgs------------~D~~i~iwd~~~--~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPF-LLSGS------------RDKTIKMWDVST--GMCLMTLVGHDNW 340 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCE-EEEEE------------TTSEEEEEETTT--TEEEEEEECCSSC
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCE-EEEEe------------CCCeEEEEECCC--CceEEEEECCCCc
Confidence 1234578888874 33 33322 235788888751 2233444445556
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+. +.|+|+|++|+.++. ...|.+.+..++ .....+ ......+.. ++|+|+|..|+..+.
T Consensus 341 v~~v~~~~~g~~l~s~s~----D~~i~vwd~~~~-~~~~~~-~~h~~~v~~------l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCAD----DKTLRVWDYKNK-RCMKTL-NAHEHFVTS------LDFHKTAPYVVTGSV 400 (410)
T ss_dssp EEEEEECSSSSCEEEEET----TTEEEEECCTTS-CCCEEE-ECCSSCEEE------EEECSSSSCEEEEET
T ss_pred EEEEEEcCCCCEEEEEeC----CCeEEEEECCCC-ceEEEE-cCCCCcEEE------EEEcCCCCEEEEEeC
Confidence 77 999999999886552 245666677664 222223 222222333 889999999988773
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=133.64 Aligned_cols=290 Identities=10% Similarity=-0.020 Sum_probs=158.4
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..++++++++.++.. .....|+++|+++++..+....+.. .....++|+|||+.+++....
T Consensus 3 ~g~~~~~~~~~~v~~----------~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~~------ 63 (349)
T 1jmx_B 3 TGPALKAGHEYMIVT----------NYPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNNH------ 63 (349)
T ss_dssp -CCCCCTTCEEEEEE----------ETTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEETT------
T ss_pred ccccccCCCEEEEEe----------CCCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeCC------
Confidence 457788888665543 3457999999998876544332220 014678999999988776321
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCCc-------eEEeeeeCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA-------VYTAVEPSP 184 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~~-------~~~~~~~Sp 184 (751)
...|+++++ +|+.. .+.... ....++|||
T Consensus 64 ------------------------------------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 64 ------------------------------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp ------------------------------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred ------------------------------------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 147888898 56433 332111 145789999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
||++|++........ ..........|++||+++++.... .... ....+..++|+|||+ +++..
T Consensus 102 dg~~l~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~s~dg~--l~~~~-- 165 (349)
T 1jmx_B 102 DGKEVYATVNPTQRL-NDHYVVKPPRLEVFSTADGLEAKPVRTFP-----------MPRQVYLMRAADDGS--LYVAG-- 165 (349)
T ss_dssp TSSEEEEEEEEEEEC-SSCEEECCCEEEEEEGGGGGGBCCSEEEE-----------CCSSCCCEEECTTSC--EEEES--
T ss_pred CCCEEEEEccccccc-ccccccCCCeEEEEECCCccccceeeecc-----------CCCcccceeECCCCc--EEEcc--
Confidence 999999876431000 000000135799999987543211 1000 012345778999998 33321
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEeece-------------------------eEE-EEEecCCceEEEeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-------------------------RFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-------------------------~~~-~~~spdg~~l~~~~~ 317 (751)
..|++++++ ++.......... ... ..+++|+.......
T Consensus 166 ------------~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~- 229 (349)
T 1jmx_B 166 ------------PDIYKMDVK---TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA- 229 (349)
T ss_dssp ------------SSEEEECTT---TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC-
T ss_pred ------------CcEEEEeCC---CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc-
Confidence 237777774 222222111110 111 44555543322111
Q ss_pred ecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCC-CCCEEEEeeeecCCcceEEEEccCCCCCCCCCcee
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 396 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp-DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 396 (751)
.....++.++..++ ..+.+....... ....++||| ||+.|++. . ..|
T Consensus 230 --~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~sp~dg~~l~~~--~---------------------~~v 277 (349)
T 1jmx_B 230 --DLLYGYLSVDLKTG--KTHTQEFADLTE-----LYFTGLRSPKDPNQIYGV--L---------------------NRL 277 (349)
T ss_dssp --EEEEEEEEEETTTC--CEEEEEEEECSS-----CEEEEEECSSCTTEEEEE--E---------------------SEE
T ss_pred --ccceeEEEEeccCC--cEEecccccCCC-----cceeeEecCCCCCEEEEE--c---------------------CeE
Confidence 11223444666664 222222111100 011177999 99988776 2 178
Q ss_pred EEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 397 DLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 397 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
++||+++++......... ....++|||||+.|+.. . ....|+++|+.+++..
T Consensus 278 ~~~d~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~--~--~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLDH------------TYYCVAFDKKGDKLYLG--G--TFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEETTTTEEEEEEECSS------------CCCEEEECSSSSCEEEE--S--BSSEEEEEETTTTEEE
T ss_pred EEEECccCeEEEEEcCCC------------CccceEECCCCCEEEEe--c--CCCeEEEEecccccee
Confidence 999999887655543321 12346899999988873 2 2367999999887644
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=139.73 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=160.4
Q ss_pred cceeEEeecCCCCCCCCcccccCC-CCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~-~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...|++||+.+ ++...+..+ .....+...+||| ||++|+.. .....|.++|++++..+.+....
T Consensus 141 dg~i~lWd~~~----~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~----------s~D~~v~iwd~~~~~~~~~~~~~ 206 (435)
T 4e54_B 141 GGDIMLWNFGI----KDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS----------SMEGTTRLQDFKGNILRVFASSD 206 (435)
T ss_dssp TSCEEEECSSC----CSCCEEECCCSSSCCCCEEEECSSCTTEEEEE----------CSSSCEEEEETTSCEEEEEECCS
T ss_pred CCEEEEEECCC----CCceeEEEccCCCCCEEEEEEeCCCCCEEEEE----------eCCCEEEEeeccCCceeEEeccC
Confidence 34799999988 665443322 2334689999999 67777764 23356778888877665554333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. ...+..++|+|||+.|+....+ ..|.+
T Consensus 207 ~~--~~~~~~~~~~~~~~~l~~g~~d-------------------------------------------------g~i~~ 235 (435)
T 4e54_B 207 TI--NIWFCSLDVSASSRMVVTGDNV-------------------------------------------------GNVIL 235 (435)
T ss_dssp SC--SCCCCCEEEETTTTEEEEECSS-------------------------------------------------SBEEE
T ss_pred CC--CccEEEEEECCCCCEEEEEeCC-------------------------------------------------CcEee
Confidence 21 1124578999999999877432 46788
Q ss_pred EcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccC
Q 004475 162 GSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 238 (751)
+|++| ....+..+ ..+..++|+|+++.++++... ...+.+||+...+.. .+.. ..
T Consensus 236 wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~------------d~~v~iwd~~~~~~~~~~~~----------~~ 293 (435)
T 4e54_B 236 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV------------DQTVKIWDLRQVRGKASFLY----------SL 293 (435)
T ss_dssp EESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET------------TSBCCEEETTTCCSSSCCSB----------CC
T ss_pred eccCcceeEEEecccceEEeeeecCCCceEEEEecC------------cceeeEEecccccccceEEE----------ee
Confidence 88866 44555545 778899999999977766543 235778998754322 1110 01
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec------eeEE-EEEecCCce
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD------LRFS-VSWCDDSLA 311 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~------~~~~-~~~spdg~~ 311 (751)
.....+..++|+|||++ |+..+ ..+.|.++++.. +.....+.... .... ..|+|++..
T Consensus 294 ~h~~~v~~~~~spdg~~-l~s~~------------~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 294 PHRHPVNAACFSPDGAR-LLTTD------------QKSEIRVYSASQ--WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp BCSSCEEECCBCTTSSE-EEEEE------------SSSCEEEEESSS--SSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred eccccccceeECCCCCe-eEEEc------------CCCEEEEEECCC--CccceEEecccccccccceeEEEEEcCCCCE
Confidence 12234668999999998 55543 235677777741 22222222111 0111 567888877
Q ss_pred EEEeeeec--------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEc
Q 004475 312 LVNETWYK--------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 383 (751)
Q Consensus 312 l~~~~~~~--------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~ 383 (751)
++...... .....|.+.+..++ .....+.......+.. ..+|||||+.|+..+ +
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-~~~~~l~~~~~~~v~s-----~~~fspdg~~lasg~-d----------- 420 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSG-KMMCQLYDPESSGISS-----LNEFNPMGDTLASAM-G----------- 420 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSC-CEEEEECCSSCCCCCC-----EEEECTTSSCEEEEC-S-----------
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCC-cEEEEEeCCCCCcEEE-----EEEECCCCCEEEEEc-C-----------
Confidence 76554211 12235777777764 2222232222222211 136999999887654 1
Q ss_pred cCCCCCCCCCceeEEEecCCCcee
Q 004475 384 GRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 384 ~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
..|++|++++|+.+
T Consensus 421 ----------~~i~iW~~~~gk~r 434 (435)
T 4e54_B 421 ----------YHILIWSQQEARTR 434 (435)
T ss_dssp ----------SEEEECCCC-----
T ss_pred ----------CcEEEEECCcCeee
Confidence 16888999887653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=135.38 Aligned_cols=250 Identities=12% Similarity=0.051 Sum_probs=151.3
Q ss_pred cceeEEeecCCCCCCCCcccccCC-CCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~-~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...|.+|++.+ ++....... .....+....||| |++.|+... ....|.++++.+...+.+....
T Consensus 95 dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~ 160 (383)
T 3ei3_B 95 GGDIILWDYDV----QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS----------IRGATTLRDFSGSVIQVFAKTD 160 (383)
T ss_dssp TSCEEEEETTS----TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE----------TTTEEEEEETTSCEEEEEECCC
T ss_pred CCeEEEEeCCC----cccceeeecCCcCCceeEEEeCCCCCCEEEEEe----------CCCEEEEEECCCCceEEEeccC
Confidence 34789999988 776655432 2334688999999 667776642 3467888898876665554333
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. ...+..++|+||++.|+....+ ..|.+
T Consensus 161 ~~--~~~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~i~i 189 (383)
T 3ei3_B 161 SW--DYWYCCVDVSVSRQMLATGDST-------------------------------------------------GRLLL 189 (383)
T ss_dssp CS--SCCEEEEEEETTTTEEEEEETT-------------------------------------------------SEEEE
T ss_pred CC--CCCeEEEEECCCCCEEEEECCC-------------------------------------------------CCEEE
Confidence 21 1236789999999998877432 47888
Q ss_pred EcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc----eeeeeccCCCCCCCCC
Q 004475 162 GSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK----LVRELCDLPPAEDIPV 235 (751)
Q Consensus 162 ~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~ 235 (751)
+|+++ ....+..+ ..+..++|+|||++++++... ...+.+||+.+. .......
T Consensus 190 ~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~--------- 248 (383)
T 3ei3_B 190 LGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV------------DATVKLWDLRNIKDKNSYIAEMP--------- 248 (383)
T ss_dssp EETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEET------------TSEEEEEEGGGCCSTTCEEEEEE---------
T ss_pred EECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeC------------CCEEEEEeCCCCCcccceEEEec---------
Confidence 88866 44555555 778899999999954444332 346889998752 2221111
Q ss_pred ccCCccCCCceeeeec-CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec----------------
Q 004475 236 CYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---------------- 298 (751)
Q Consensus 236 ~~~~~~~~~~~~~~sp-dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---------------- 298 (751)
....+..++|+| ||+. |+..+ ..+.|.++++.. +.....+....
T Consensus 249 ----~~~~v~~~~~s~~~~~~-l~~~~------------~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 249 ----HEKPVNAAYFNPTDSTK-LLTTD------------QRNEIRVYSSYD--WSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp ----CSSCEEEEEECTTTSCE-EEEEE------------SSSEEEEEETTB--TTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred ----CCCceEEEEEcCCCCCE-EEEEc------------CCCcEEEEECCC--CccccccccccccccccccceEEeccC
Confidence 123456899999 9997 55543 235788888742 22223333211
Q ss_pred -eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 299 -LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 299 -~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+... +.|+|||+. + .+....|.+.++.++ .....+......... ..++|+|||+.|+..+
T Consensus 310 ~~~~~~~~~s~dg~~----s--~s~d~~i~iwd~~~~-~~~~~l~~~~~~~~~-----~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL----L--LNDKRTIDIYDANSG-GLVHQLRDPNAAGII-----SLNKFSPTGDVLASGM 371 (383)
T ss_dssp SSSEEEEECBCCTTT----C--TTCCCCEEEEETTTC-CEEEEECBTTBCSCC-----CEEEECTTSSEEEEEE
T ss_pred CCCceEEEecCCccc----c--cCCCCeEEEEecCCC-ceeeeecCCCCCceE-----EEEEEecCccEEEEec
Confidence 1222 445555554 1 123456777888774 222223211111111 1158999999887775
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-12 Score=129.86 Aligned_cols=244 Identities=8% Similarity=0.027 Sum_probs=152.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC----eeeccCCCCccccceeeeeEEecCCc-EEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESPDICLNAVFGSFVWVNNST-LLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~----~~~lt~~~~~~~~~~~~~~~wspDg~-~l~~~~~ 106 (751)
.+...+|||||++|+... ....|+++++.+++ .+.+..... .+..++|+|||+ .|+....
T Consensus 13 ~v~~~~~s~~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEc----------CCCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcC
Confidence 588999999999998863 33677777777776 444432222 477899999999 8887743
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCC--C-ceEEeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT--P-AVYTAVE 181 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~--~-~~~~~~~ 181 (751)
+ ..|.++++ .+ +...+.. + ..+..++
T Consensus 78 d-------------------------------------------------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 78 Q-------------------------------------------------GEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp T-------------------------------------------------SCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred C-------------------------------------------------CeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 2 46778887 55 6666665 5 7788999
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC---------ceeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG---------KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
|+| ++.|+....+ ..|.+||+.+ ++.... +. ....+..+.|+|+
T Consensus 109 ~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~------------~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLNSNN------------TK-VKNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESCSSS------------SS-SCCCEEEEEECSS
T ss_pred eCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCeeeE------------Ee-eCCceEEEEecCC
Confidence 999 8888766443 3688998864 322111 01 2234668999999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-EeEeeceeEE-EEEec-CCceEEEeeeecccceeEEEec
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFS-VSWCD-DSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~-~~~sp-dg~~l~~~~~~~~~~~~l~~~~ 329 (751)
+ ++... ..+.|+++++......... ........+. +.|+| |++.|+.... .+.-.||.++
T Consensus 162 ~---l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~~~~ 224 (342)
T 1yfq_A 162 R---LIVGM------------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVEFFD 224 (342)
T ss_dssp E---EEEEE------------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEEECC
T ss_pred c---EEEEe------------CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec--CCcEEEEEEc
Confidence 7 33332 2357888888520111122 2223345566 89999 9998887663 3334566565
Q ss_pred CCCCC--Ccceeeeecccc---------cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 330 PGSKD--VAPRVLFDRVFE---------NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 330 ~~~~~--~~~~~l~~~~~~---------~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
..+.. ............ .+.. ++|+|||+.|+..+.+ ..|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~s~~~~~l~~~~~d---------------------g~i~v 277 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS------IEFSPRHKFLYTAGSD---------------------GIISC 277 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE------EEECTTTCCEEEEETT---------------------SCEEE
T ss_pred CCCcccccccceeeecccccccccccceeEEE------EEEcCCCCEEEEecCC---------------------ceEEE
Confidence 54100 011222221111 1212 7899999998877722 26899
Q ss_pred EecCCCceeEEe
Q 004475 399 FDINTGSKERIW 410 (751)
Q Consensus 399 ~d~~~g~~~~l~ 410 (751)
||+.+++....+
T Consensus 278 wd~~~~~~~~~~ 289 (342)
T 1yfq_A 278 WNLQTRKKIKNF 289 (342)
T ss_dssp EETTTTEEEEEC
T ss_pred EcCccHhHhhhh
Confidence 999988764443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=131.22 Aligned_cols=267 Identities=11% Similarity=0.076 Sum_probs=165.4
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|+++++.+++...+...... ..+..++|+|||+.|+..+.+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~d--------------------------------- 155 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDES---TYVASVKWSHDGSFLSVGLGN--------------------------------- 155 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTT---CCEEEEEECTTSSEEEEEETT---------------------------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCC---CCEEEEEECCCCCEEEEECCC---------------------------------
Confidence 46899999999987666544221 147889999999999887542
Q ss_pred ccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
+.|.++++ ++ ..+.+..+ ..+..++| +++.|+.... ...+.+||+.
T Consensus 156 ----------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~ 204 (401)
T 4aez_A 156 ----------------GLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-------------SGAIHHHDVR 204 (401)
T ss_dssp ----------------SCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET-------------TSEEEEEETT
T ss_pred ----------------CeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC-------------CCCEEEEecc
Confidence 46777787 55 34455444 67788888 5666665543 3468899997
Q ss_pred Cc-e-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE
Q 004475 218 GK-L-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (751)
Q Consensus 218 ~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 295 (751)
.. . ...+.. ....+..+.|+|||+. ++... ..+.|.++++.. +.....+.
T Consensus 205 ~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~-l~s~~------------~d~~v~iwd~~~--~~~~~~~~ 256 (401)
T 4aez_A 205 IANHQIGTLQG-------------HSSEVCGLAWRSDGLQ-LASGG------------NDNVVQIWDARS--SIPKFTKT 256 (401)
T ss_dssp SSSCEEEEEEC-------------CSSCEEEEEECTTSSE-EEEEE------------TTSCEEEEETTC--SSEEEEEC
T ss_pred cCcceeeEEcC-------------CCCCeeEEEEcCCCCE-EEEEe------------CCCeEEEccCCC--CCccEEec
Confidence 32 2 222222 1234568999999997 55543 235788888851 22223333
Q ss_pred eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 296 KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 296 ~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
.....+. +.|+|++..++.+... .....|.++++.++ ......... ..+.. ++|+|||+.|+....
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~--~~~~~~~~~-~~v~~------~~~s~~~~~l~~~~g--- 323 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATG--ARVNTVDAG-SQVTS------LIWSPHSKEIMSTHG--- 323 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTC--CEEEEEECS-SCEEE------EEECSSSSEEEEEEC---
T ss_pred CCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCC--CEEEEEeCC-CcEEE------EEECCCCCeEEEEee---
Confidence 4455566 9999999887765521 12356888888774 222222221 11222 889999999888651
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEE
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYH 454 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~ 454 (751)
.....|.+|++.+++...+...... ......++|+|||+.|+... . -+.|.
T Consensus 324 ----------------~~dg~i~v~~~~~~~~~~~~~~~~h---------~~~v~~~~~s~dg~~l~s~~-~---dg~i~ 374 (401)
T 4aez_A 324 ----------------FPDNNLSIWSYSSSGLTKQVDIPAH---------DTRVLYSALSPDGRILSTAA-S---DENLK 374 (401)
T ss_dssp ----------------TTTCEEEEEEEETTEEEEEEEEECC---------SSCCCEEEECTTSSEEEEEC-T---TSEEE
T ss_pred ----------------cCCCcEEEEecCCccceeEEEecCC---------CCCEEEEEECCCCCEEEEEe-C---CCcEE
Confidence 1233788899988766554332111 11122368999999777543 2 35789
Q ss_pred EEEcCCCcee
Q 004475 455 ILSWPLKKSS 464 (751)
Q Consensus 455 ~~~~~~g~~~ 464 (751)
++++.+++..
T Consensus 375 iw~~~~~~~~ 384 (401)
T 4aez_A 375 FWRVYDGDHV 384 (401)
T ss_dssp EEECCC----
T ss_pred EEECCCCccc
Confidence 9998877543
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=140.34 Aligned_cols=211 Identities=11% Similarity=-0.020 Sum_probs=124.4
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.....-+ ++.|.||++||.+. +...|.. ....|+ ..|.|++ ++.+|+
T Consensus 28 ~~g~~l~y~~~G~--------g~~~~vvllHG~~~-----------~~~~w~~----~~~~L~-~~~~via---~Dl~Gh 80 (318)
T 2psd_A 28 VLDSFINYYDSEK--------HAENAVIFLHGNAT-----------SSYLWRH----VVPHIE-PVARCII---PDLIGM 80 (318)
T ss_dssp ETTEEEEEEECCS--------CTTSEEEEECCTTC-----------CGGGGTT----TGGGTT-TTSEEEE---ECCTTS
T ss_pred eCCeEEEEEEcCC--------CCCCeEEEECCCCC-----------cHHHHHH----HHHHhh-hcCeEEE---EeCCCC
Confidence 3566665544321 12468999999642 1112221 122333 4578998 677788
Q ss_pred CCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC----C
Q 004475 569 GDKLPND---RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT----L 640 (751)
Q Consensus 569 g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~----~ 640 (751)
|.+.... .......+|+.++++.+ +. .++.|+||||||.+|+.+|.++|++++++|++++..... .
T Consensus 81 G~S~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~ 154 (318)
T 2psd_A 81 GKSGKSGNGSYRLLDHYKYLTAWFELL------NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDE 154 (318)
T ss_dssp TTCCCCTTSCCSHHHHHHHHHHHHTTS------CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTT
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHhc------CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhh
Confidence 8775431 22445555555554433 33 689999999999999999999999999999976432110 0
Q ss_pred CccC------cccc--------c-------------cc-chhhHHHH-----------------HhcCc-----------
Q 004475 641 TPFG------FQTE--------F-------------RT-LWEATNVY-----------------IEMSP----------- 664 (751)
Q Consensus 641 ~~~~------~~~~--------~-------------~~-~~~~~~~~-----------------~~~~~----------- 664 (751)
.+.. +... . .. .......+ ....+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
T 2psd_A 155 WPDIEEDIALIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQ 234 (318)
T ss_dssp SCSCHHHHHHHHSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHH
T ss_pred hhhHHHHHHHHhcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHH
Confidence 0000 0000 0 00 00000000 00000
Q ss_pred -----ccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 665 -----ITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 665 -----~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
...+.++ ++|+|+++|++| .++ . .++.+.+.+ ...+++++ +++|... .+....+.+.+.+||.+
T Consensus 235 ~~~~~~~~l~~i~~~P~Lvi~G~~D-~~~--~-~~~~~~~~~----~~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~ 304 (318)
T 2psd_A 235 IVRNYNAYLRASDDLPKLFIESDPG-FFS--N-AIVEGAKKF----PNTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVER 304 (318)
T ss_dssp HHHHHHHHHHTCTTSCEEEEEEEEC-SSH--H-HHHHHHTTS----SSEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCeEEEEeccc-cCc--H-HHHHHHHhC----CCcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHH
Confidence 0123457 999999999999 876 5 555554333 34677778 6799765 67788999999999988
Q ss_pred HhcC
Q 004475 739 YCLS 742 (751)
Q Consensus 739 ~l~~ 742 (751)
....
T Consensus 305 ~~~~ 308 (318)
T 2psd_A 305 VLKN 308 (318)
T ss_dssp HHC-
T ss_pred hhcc
Confidence 7553
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=143.73 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=137.6
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh------
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA------ 552 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 552 (751)
..+.+++.+. -+.....++|+|+++++. ..++|+|+++||..+ +.. .......+..
T Consensus 11 ~v~~~~~~S~~l~~~r~~~VylP~~y~~~-~~~yPVlylldG~~~---------------f~~-~~~~~~~l~~~~~~~~ 73 (331)
T 3gff_A 11 EYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLDGEDQ---------------FDH-MASLLQFLSQGTMPQI 73 (331)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTGGGS-CCCEEEEEESSHHHH---------------HHH-HHHHHHHHTCSSSCSS
T ss_pred eEEEEEEEecCCCCeEEEEEEeCCCCCCC-CCCccEEEEecChhh---------------hHH-HHHHHHHHHhhhhcCC
Confidence 4566667664 367899999999998653 246999999999421 100 0011223322
Q ss_pred CCeEEEEcCCCC----C---------CCCCC------CCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH
Q 004475 553 RRFAVLAGPSIP----I---------IGEGD------KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAF 613 (751)
Q Consensus 553 ~G~~v~~~~~~~----~---------~g~g~------~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~ 613 (751)
.+++||.++..+ + .|... ......+...+.+ +++.++.++..+++.+ +|+||||||+
T Consensus 74 ~~~IvV~i~~~~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~---el~p~i~~~~~~~~~r-~i~G~S~GG~ 149 (331)
T 3gff_A 74 PKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEK---ELAPSIESQLRTNGIN-VLVGHSFGGL 149 (331)
T ss_dssp CCCEEEEECCSSHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHH---THHHHHHHHSCEEEEE-EEEEETHHHH
T ss_pred CCEEEEEECCCCcccccCCCccccccccccccccCCCCCcHHHHHHHHHH---HHHHHHHHHCCCCCCe-EEEEECHHHH
Confidence 357777744310 0 01000 0011122222222 5566676766666644 7999999999
Q ss_pred HHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCC-------CC
Q 004475 614 MTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDD-------KV 686 (751)
Q Consensus 614 ~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~-------~v 686 (751)
+|+.++.++|+.|+++++++|.+.+... ......... +........|+++.||+.|. .+
T Consensus 150 ~al~~~~~~p~~F~~~~~~S~~~w~~~~---------~~~~~~~~~-----~~~~~~~~~~l~l~~G~~d~~~~~~~~~~ 215 (331)
T 3gff_A 150 VAMEALRTDRPLFSAYLALDTSLWFDSP---------HYLTLLEER-----VVKGDFKQKQLFMAIANNPLSPGFGVSSY 215 (331)
T ss_dssp HHHHHHHTTCSSCSEEEEESCCTTTTTT---------HHHHHHHHH-----HHHCCCSSEEEEEEECCCSEETTTEECCH
T ss_pred HHHHHHHhCchhhheeeEeCchhcCChH---------HHHHHHHHH-----hhcccCCCCeEEEEeCCCCCCCccchHHH
Confidence 9999999999999999999997532110 000000111 11112245899999999998 46
Q ss_pred CCChHHHHHHHHHHHhC---CCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 687 GLFPMQAERFFDALKGH---GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 687 p~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+ ...+++++++|++. |.++++.++|+++|.... ...+...++||-....
T Consensus 216 ~--~~~~~~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~~ 267 (331)
T 3gff_A 216 H--KDLNLAFADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDFA 267 (331)
T ss_dssp H--HHHHHHHHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGGC
T ss_pred H--HHHHHHHHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhcC
Confidence 6 77889999999875 678999999999998642 2344555666655443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=135.40 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=140.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC---eeeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.+...+|||||+.||+. .....|+++++++++ ...+..... .+..++|+|||+.|+..+.+
T Consensus 10 ~i~~~~~s~~~~~l~~~----------~~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d- 73 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAIC----------PNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD- 73 (372)
T ss_dssp CCCEEEECTTSSEEEEE----------CSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEE----------eCCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC-
Confidence 58899999999999885 234678888888875 333322222 47789999999999887432
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecCCC-ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt~~-~~~~~~~~S 183 (751)
..|.++++ +++. ..+..+ ..+..++|+
T Consensus 74 ------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 74 ------------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ------------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ------------------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 35666777 5532 222333 678899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee----eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV----RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
|||++|+....+ ..+.+|+.+.+.. ..+.. .....+..+.|+|||+. ++.
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~-l~~ 159 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKK------------PIRSTVLSLDWHPNSVL-LAA 159 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECT------------TCCSCEEEEEECTTSSE-EEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeec------------ccCCCeeEEEEcCCCCE-EEE
Confidence 999999887543 3577888875542 11110 11234668999999987 555
Q ss_pred EEeccCCCCccccCcccceeeccCCC----------------CCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEP----------------AEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
.. ..+.++++++.. ..+.....+......+. +.|+|||+.|+.... .
T Consensus 160 ~~------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 223 (372)
T 1k8k_C 160 GS------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----D 223 (372)
T ss_dssp EE------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----T
T ss_pred Ec------------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----C
Confidence 43 234677777420 01122223334455667 999999998887662 2
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEe
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 369 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~ 369 (751)
..|.++++.++ ............+.. ++|+|||+.|+..
T Consensus 224 ~~i~i~d~~~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 224 STVCLADADKK--MAVATLASETLPLLA------VTFITESSLVAAG 262 (372)
T ss_dssp TEEEEEEGGGT--TEEEEEECSSCCEEE------EEEEETTEEEEEE
T ss_pred CEEEEEECCCC--ceeEEEccCCCCeEE------EEEecCCCEEEEE
Confidence 35666777664 222222222222222 7899999876654
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=128.12 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=130.0
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCC--------CC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS--------IP 564 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~--------~~ 564 (751)
.+.+.+++|.+. ++|.|+||-+||+.+ ...+||+++..+. .+
T Consensus 91 ~~~~~i~lP~~~----~~p~Pvii~i~~~~~--------------------------~~~~G~a~~~~~~~~v~~~~~~g 140 (375)
T 3pic_A 91 SFTVTITYPSSG----TAPYPAIIGYGGGSL--------------------------PAPAGVAMINFNNDNIAAQVNTG 140 (375)
T ss_dssp EEEEEEECCSSS----CSSEEEEEEETTCSS--------------------------CCCTTCEEEEECHHHHSCCSSGG
T ss_pred EEEEEEECCCCC----CCCccEEEEECCCcc--------------------------ccCCCeEEEEecccccccccCCC
Confidence 689999999763 357999999998521 0347999987432 11
Q ss_pred CCCCCCC------CCCchhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 565 IIGEGDK------LPNDRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 565 ~~g~g~~------~~~~~~~~~~~~d~~~~v~~l~~~~--~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
.+|+|.- ...........-++.++++||++++ .||++||+++|||+||.+|+++++.. ++|+++|+.++..
T Consensus 141 s~g~g~f~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~ 219 (375)
T 3pic_A 141 SRGQGKFYDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGA 219 (375)
T ss_dssp GTTCSHHHHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCT
T ss_pred CccceecccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCC
Confidence 2232210 0011112233568999999999998 89999999999999999999999999 6899999988643
Q ss_pred CCCCC-c-------cCcccc------cccchhhHHHHHhcC------ccc---ccCC-CCCCEEEEEcCCCCCCCCChHH
Q 004475 637 NKTLT-P-------FGFQTE------FRTLWEATNVYIEMS------PIT---HANK-IKKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 637 d~~~~-~-------~~~~~~------~~~~~~~~~~~~~~~------~~~---~~~~-~~~P~li~~G~~D~~vp~~~~~ 692 (751)
+-... . ++.... ....|... .+..+. |+. .+.- ...|+|++.| +|..++ +..
T Consensus 220 ~G~~~~R~~~~~~~~Ge~v~~~~~~~~e~~Wf~~-~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~--~~g 295 (375)
T 3pic_A 220 GGSACWRISDYLKSQGANIQTASEIIGEDPWFST-TFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLG--PQS 295 (375)
T ss_dssp TTTSCHHHHHHHHHTTCCCCCHHHHTTTCSCSCG-GGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGC--HHH
T ss_pred CchhhhhhhhhhcccCccccccccccCccccccc-chhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccC--cHH
Confidence 31100 0 000000 00122211 111111 111 0111 2478999999 888877 665
Q ss_pred HHHHHHHH----HhCC--CcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCCCCC
Q 004475 693 AERFFDAL----KGHG--ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDG 747 (751)
Q Consensus 693 ~~~~~~~l----~~~~--~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~ 747 (751)
....+.++ +..| .++.+.+..+.+|... .. .....+.+||+++|+....+.
T Consensus 296 ~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~f-p~---~~~~~~~~F~~k~L~~~~~~t 352 (375)
T 3pic_A 296 CFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF-PS---NQQSQLTAFVQKFLLGQSTNT 352 (375)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCC-CG---GGHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCccceEEEeeCCCccccC-CH---HHHHHHHHHHHHHhCCCCCCC
Confidence 54443333 3334 3567765444556332 12 234688999999998754443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=134.68 Aligned_cols=289 Identities=10% Similarity=-0.029 Sum_probs=154.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|+++|+.+ ++......++.......++|||||++++++. .....|+++++++++..........
T Consensus 20 ~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---------~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 20 PNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---------NHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEE---------TTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCeEEEEECCC----CcEEEEEecCCCCCCceeEECCCCCEEEEEe---------CCCCcEEEEeCCCCcEEEEEEcccc
Confidence 45799999988 8776544333311467899999998887754 3457899999998875543222110
Q ss_pred --cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 --~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.....+..++|||||++|++......... ..+. .....|++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-----------------------~~~~--------------~~~~~i~~ 129 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLN-----------------------DHYV--------------VKPPRLEV 129 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECS-----------------------SCEE--------------ECCCEEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccc-----------------------cccc--------------cCCCeEEE
Confidence 00002457899999999998743100000 0000 01157889
Q ss_pred EcC-CCCcee----cCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSL-DGTAKD----FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~-~G~~~~----lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
+|+ +|+... +..+..+..++|+|||+ |++. ..++++||+.+++.......... ..+..
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~---------------~~~i~~~d~~~~~~~~~~~~~~~-~~~~~ 192 (349)
T 1jmx_B 130 FSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---------------GPDIYKMDVKTGKYTVALPLRNW-NRKGY 192 (349)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE---------------SSSEEEECTTTCCEEEEECSTTC-CCTTB
T ss_pred EECCCccccceeeeccCCCcccceeECCCCc-EEEc---------------cCcEEEEeCCCCceecccccccc-CCccc
Confidence 998 553222 22224456777999999 6663 12488999987655432221110 00000
Q ss_pred cCCc---------cC----CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeE
Q 004475 237 YNSV---------RE----GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRF 301 (751)
Q Consensus 237 ~~~~---------~~----~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~ 301 (751)
.... .. ....+.+++|+.. ... .......+..++.. .+..+.+.. .....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ-DPA-----------TADLLYGYLSVDLK---TGKTHTQEFADLTELY 257 (349)
T ss_dssp CCCBCCCCCCCCCTTCEEEEEEEEEEC--------C-----------CCEEEEEEEEEETT---TCCEEEEEEEECSSCE
T ss_pred cCccceeeecCCCcceeEEeeeeeeecCCCcC-Ccc-----------ccccceeEEEEecc---CCcEEecccccCCCcc
Confidence 0000 00 0112334444322 000 00011123335543 233333221 22234
Q ss_pred E-EEEec-CCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 302 S-VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 302 ~-~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
. +.||| ||+.|+.. ...|+++++.++ +......... ... .++|+|||+.|++...
T Consensus 258 ~~~~~sp~dg~~l~~~------~~~v~~~d~~~~--~~~~~~~~~~-~~~------~~~~s~dg~~l~~~~~-------- 314 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV------LNRLAKYDLKQR--KLIKAANLDH-TYY------CVAFDKKGDKLYLGGT-------- 314 (349)
T ss_dssp EEEEECSSCTTEEEEE------ESEEEEEETTTT--EEEEEEECSS-CCC------EEEECSSSSCEEEESB--------
T ss_pred eeeEecCCCCCEEEEE------cCeEEEEECccC--eEEEEEcCCC-Ccc------ceEECCCCCEEEEecC--------
Confidence 4 88999 99988776 247999998874 2222222111 111 1789999998887441
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
...|.+||+++++....+
T Consensus 315 -------------~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 315 -------------FNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp -------------SSEEEEEETTTTEEEEEE
T ss_pred -------------CCeEEEEeccccceeeee
Confidence 237899999888754443
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=135.95 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch-hHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVE 590 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~v~ 590 (751)
.|.||++||.+. +...| ......|+++||.|++ ++.+|+|.+..... ...+..+|+.+.++
T Consensus 16 ~~~vvllHG~~~-----------~~~~w----~~~~~~L~~~~~~vi~---~Dl~GhG~S~~~~~~~~~~~a~~l~~~l~ 77 (264)
T 1r3d_A 16 TPLVVLVHGLLG-----------SGADW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEAVEMIEQTVQ 77 (264)
T ss_dssp BCEEEEECCTTC-----------CGGGG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHHHHHHHHHHH
T ss_pred CCcEEEEcCCCC-----------CHHHH----HHHHHHhcccCceEEE---ecCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 488999999641 11111 1334455558999999 67778888754221 12233333333333
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHH---HHHhCCCceeEEEEccCCCCCCCCc-----------cC--cc----cc--
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAH---LLAHAPHLFCCGIARSGSYNKTLTP-----------FG--FQ----TE-- 648 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~---~a~~~p~~~~~~v~~~~~~d~~~~~-----------~~--~~----~~-- 648 (751)
. . .++..++.|+||||||.+|+. +|.++|++++++|+.++........ +. +. ..
T Consensus 78 ~---l-~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T 1r3d_A 78 A---H-VTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVL 153 (264)
T ss_dssp T---T-CCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred H---h-CcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHH
Confidence 2 2 222223999999999999999 8888999999999887643211000 00 00 00
Q ss_pred ----cccchh-----h------------H----HHHHhc------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 649 ----FRTLWE-----A------------T----NVYIEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 649 ----~~~~~~-----~------------~----~~~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
....+. . . ..+... .....+.++++|+|+++|++|..++ .+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-------~~~ 226 (264)
T 1r3d_A 154 SDWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLA 226 (264)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHH
T ss_pred HHHhhhhhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-------HHH
Confidence 000000 0 0 000000 1112345789999999999997532 223
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+.+. +++++++++||... .+..+.+.+.+.+|+.++.
T Consensus 227 ~~~~-----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 227 ESSG-----LSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp HHHC-----SEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred HHhC-----CcEEEcCCCCCchh-hcCHHHHHHHHHHHHHHhc
Confidence 3321 46899999999875 5667889999999998754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-12 Score=133.90 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=165.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..|++||+.+ |+..++-.+.. ...+...+|||||++||... ..+.|.++++.+++..+...+...
T Consensus 125 ~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs----------~Dg~v~iWd~~~~~~~~~~~~h~~ 190 (420)
T 4gga_A 125 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT----------SSAEVQLWDVQQQKRLRNMTSHSA 190 (420)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEE----------CCCeEEEEEcCCCcEEEEEeCCCC
Confidence 4699999999 98877644433 33588999999999998853 346788888888775443332221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+. +++++++.|+..+.+ ..+++++
T Consensus 191 ----~v~--~~s~~~~~l~sgs~d-------------------------------------------------~~i~~~d 215 (420)
T 4gga_A 191 ----RVG--SLSWNSYILSSGSRS-------------------------------------------------GHIHHHD 215 (420)
T ss_dssp ----CEE--EEEEETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----ceE--EEeeCCCEEEEEeCC-------------------------------------------------CceeEee
Confidence 123 455577777766432 3566666
Q ss_pred C-CC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 164 L-DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~-~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
. .. ....+..+ ..+....|+|+|++++....+ ..+.+|+...++...... .....
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~--------~~~~~ 274 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPL--------QTFTQ 274 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCS--------EEECC
T ss_pred ecccceeeEEecccccceeeeeecCCCCeeeeeecc-------------ccceEEeeccccccceee--------eeecc
Confidence 6 22 23344444 677889999999998876544 357788887653221000 00111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..++|+|++..+++..... ..+.|.++++. .+...........+. ..|+|+++.|+.++..
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs----------~D~~I~iwd~~---t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGT----------SDRHIRIWNVC---SGACLSAVDAHSQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECT----------TTCEEEEEETT---TTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred cCCceeeeeeCCCcccEEEEEeec----------CCCEEEEEeCC---ccccceeeccccceeeeeecCCCCeEEEEEec
Confidence 223356889999999844443311 23578888875 333333333344455 8899999999877632
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
. ...|.+.+..++ ............+.. ++|||||+.|+..+.+ ..|++
T Consensus 342 ~--d~~I~iwd~~~~--~~v~~l~gH~~~V~~------l~~spdg~~l~S~s~D---------------------~tvri 390 (420)
T 4gga_A 342 A--QNQLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAAAD---------------------ETLRL 390 (420)
T ss_dssp T--TCCEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEETT---------------------TEEEE
T ss_pred C--CCEEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEecC---------------------CeEEE
Confidence 2 345777777764 222222222233333 8899999999887733 26888
Q ss_pred EecCCCc
Q 004475 399 FDINTGS 405 (751)
Q Consensus 399 ~d~~~g~ 405 (751)
||+....
T Consensus 391 Wdv~~~~ 397 (420)
T 4gga_A 391 WRCFELD 397 (420)
T ss_dssp ECCSCSS
T ss_pred EECCCCC
Confidence 8886543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-13 Score=139.77 Aligned_cols=184 Identities=10% Similarity=0.141 Sum_probs=109.4
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|||||++|+..+.++ .+.+|+.++ ....+. +.. +. ....+..++|||||+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-------------~V~iwd~~~-~l~~l~-~~~----~~----~~~sv~svafSPDG~ 142 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-------------NVSVFKDNK-MLTNLD-SKG----NL----SSRTYHCFEWNPIES 142 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-------------CEEEEETTE-EEEECC-CSS----CS----TTTCEEEEEECSSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCC-------------cEEEEeCCc-eeeecc-CCC----cc----ccccEEEEEEcCCCC
Confidence 6788999999999999886553 578898654 222221 110 00 012466899999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc--------eEeE----eeceeEE-EEEecCCceEEEeeeeccc
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--------EILH----KLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~l~----~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
. |+..+ ..+.|.++++. ++.. ..+. .+...+. ++||||| |+.++.
T Consensus 143 ~-LAsgs------------~DGtVkIWd~~---~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---- 200 (588)
T 2j04_A 143 S-IVVGN------------EDGELQFFSIR---KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---- 200 (588)
T ss_dssp C-EEEEE------------TTSEEEEEECC---CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----
T ss_pred E-EEEEc------------CCCEEEEEECC---CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----
Confidence 8 67654 34688888886 3321 2221 1123455 9999999 544331
Q ss_pred ceeEEEecCCCCCCc--ceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEE
Q 004475 322 QTRTWLVCPGSKDVA--PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 399 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 399 (751)
...+.+.+++++... .+.+.......+.. ++|+ |+.|+..+. ..|.+|
T Consensus 201 D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s------vaFs--g~~LASa~~----------------------~tIkLW 250 (588)
T 2j04_A 201 NNSVFSMTVSASSHQPVSRMIQNASRRKITD------LKIV--DYKVVLTCP----------------------GYVHKI 250 (588)
T ss_dssp TCCEEEECCCSSSSCCCEEEEECCCSSCCCC------EEEE--TTEEEEECS----------------------SEEEEE
T ss_pred CCeEEEEECCCCccccceeeecccccCcEEE------EEEE--CCEEEEEeC----------------------CeEEEE
Confidence 346667777774211 11232222233333 8899 677776651 279999
Q ss_pred ecCCCceeEEeeccchhhhhceeeeecCCcceee--ccCCCEEEEEE
Q 004475 400 DINTGSKERIWESNREKYFETAVALVFGQGEEDI--NLNQLKILTSK 444 (751)
Q Consensus 400 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~ 444 (751)
|+.+++...+.... ......+++ |||++.|+.+.
T Consensus 251 d~~~~~~~~~~~gh-----------~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 251 DLKNYSISSLKTGS-----------LENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp ETTTTEEEEEECSC-----------CSCCCEEEETTCSSCEEEEECS
T ss_pred ECCCCeEEEEEcCC-----------CceEEEEEeeeCCCCCEEEEEc
Confidence 99887764443221 111223578 99997766554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=130.71 Aligned_cols=253 Identities=10% Similarity=-0.034 Sum_probs=152.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-------eeeccCCCCccccceeeeeEEecC----C--
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLFESPDICLNAVFGSFVWVNN----S-- 98 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-------~~~lt~~~~~~~~~~~~~~~wspD----g-- 98 (751)
.+...+|+| +.|+.. ...+.|.++++++++ ...+..... .+..++|+|+ |
T Consensus 18 ~i~~~~~~~--~~l~s~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSC----------SGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp CEEEEEECS--SEEEEE----------ETTSEEEEEESBCCTTCCGGGGEEEEECCTT-----CEEEEEEEEEEETTTEE
T ss_pred CeEEEEecC--CeEEEE----------cCCCEEEEEECCCcccccCCCcceEEecCCC-----cEEEEEEecccccCCcc
Confidence 578899999 666664 334688888988877 344432222 4778999999 9
Q ss_pred -cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC------cee
Q 004475 99 -TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT------AKD 170 (751)
Q Consensus 99 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~------~~~ 170 (751)
+.|+..+.+ ..|.++++ +++ ...
T Consensus 81 ~~~l~s~~~d-------------------------------------------------g~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTSFS-------------------------------------------------GDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEETT-------------------------------------------------SCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEcCC-------------------------------------------------CCEEEEEccCCccccccccee
Confidence 888877432 35666676 443 455
Q ss_pred cCCC------ceEEeeeeC----CCCce-EEEEEecCCcccccccCCCceeEEEEeCCC------ceeeeeccC-CCCCC
Q 004475 171 FGTP------AVYTAVEPS----PDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDG------KLVRELCDL-PPAED 232 (751)
Q Consensus 171 lt~~------~~~~~~~~S----pDG~~-i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~------~~~~~l~~~-~~~~~ 232 (751)
+..+ ..+..++|+ |||+. |+....+ ..+++||+.+ ++...+... ....
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 177 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYIWKFHPFADESNSLTLNWSPTLELQG- 177 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEE-
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcEEEEeCCccccccccceeeccCcceeee-
Confidence 5444 567899999 99999 7665433 3588898876 322210000 0000
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEe---e---ceeEE-EE
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK---L---DLRFS-VS 304 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~---~---~~~~~-~~ 304 (751)
...........+..+.|+|+| . ++... ..+.|+++++. .... ..+.. . ...+. +.
T Consensus 178 ~~~~~~~~~~~i~~~~~~~~~-~-l~~~~------------~dg~i~i~d~~---~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 178 TVESPMTPSQFATSVDISERG-L-IATGF------------NNGTVQISELS---TLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp EECCSSSSCCCCCEEEECTTS-E-EEEEC------------TTSEEEEEETT---TTEEEEEEECCC---CCCCCEEEEE
T ss_pred eeccccCCCCCceEEEECCCc-e-EEEEe------------CCCcEEEEECC---CCceeEEEeccccccccCCccceEE
Confidence 000001123346789999999 5 66543 33678888885 2222 23333 3 55667 99
Q ss_pred EecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec-------------ccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-------------VFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
|+||++.|+..... +....|.++++.++ ........ ....+.. ++|+|||++|+..+.
T Consensus 241 ~~~~~~~l~~~~~d-~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 241 FSPQGSLLAIAHDS-NSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMS------LSFNDSGETLCSAGW 311 (397)
T ss_dssp ECSSTTEEEEEEEE-TTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEE------EEECSSSSEEEEEET
T ss_pred ECCCCCEEEEEecC-CCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEE------EEECCCCCEEEEEeC
Confidence 99999998876632 11146778887764 22222222 1122222 789999999888773
Q ss_pred ecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 372 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+ ..|++||+.+++....+.
T Consensus 312 d---------------------g~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 312 D---------------------GKLRFWDVKTKERITTLN 330 (397)
T ss_dssp T---------------------SEEEEEETTTTEEEEEEE
T ss_pred C---------------------CeEEEEEcCCCceeEEEe
Confidence 2 378999998887655554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=141.63 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=171.3
Q ss_pred ceeEEeec--CCCCCCCCcccccCCCCcccccceeecC----CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeecc
Q 004475 5 TGIGIHRL--LPDDSLGPEKEVHGYPDGAKINFVSWSP----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (751)
Q Consensus 5 ~~~~~~~~--~~~~~~g~~~~l~~~~~~~~~~~p~~SP----DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt 78 (751)
..|.++|+ .+ ++.... ++.+......+||| ||++|+.... ....|.++|..+++..+..
T Consensus 200 ~~V~v~D~~~~t----~~~~~~--i~~g~~p~~va~sp~~~~dg~~l~v~~~---------~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 200 ARIDMIDLWAKE----PTKVAE--IKIGIEARSVESSKFKGYEDRYTIAGAY---------WPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp SEEEEEETTSSS----CEEEEE--EECCSEEEEEEECCSTTCTTTEEEEEEE---------ESSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECcCCC----CcEEEE--EecCCCcceEEeCCCcCCCCCEEEEEEc---------cCCeEEEEeccccccceee
Confidence 45889999 45 554332 33444678899999 9999877542 2367889999888765443
Q ss_pred CCCCc-----ccc--ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhh
Q 004475 79 ESPDI-----CLN--AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (751)
Q Consensus 79 ~~~~~-----~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (751)
..... .++ +.+..+.+|||++.+++....
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-------------------------------------------- 300 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-------------------------------------------- 300 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT--------------------------------------------
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECC--------------------------------------------
Confidence 22110 001 125678999999887776321
Q ss_pred hhheeeEEEEEcC-CCCc-e--ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccC
Q 004475 152 DYYTTAQLVLGSL-DGTA-K--DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (751)
Q Consensus 152 ~~~~~~~l~~~~~-~G~~-~--~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 227 (751)
...|+++|+ +++. + .+........+.|+|||++|++.... ...|.+||+.+++.......
T Consensus 301 ----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------------~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 301 ----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------------SNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp ----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEEC
T ss_pred ----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC------------CCeEEEEECCCCeEEEeecc
Confidence 157888988 4432 2 33222456678999999999876543 34688999988765543221
Q ss_pred CCCCCCCCccCCccCCCceee-eecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC-----CCCceEeEeeceeE
Q 004475 228 PPAEDIPVCYNSVREGMRSIS-WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-----GEKPEILHKLDLRF 301 (751)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~l~~~~~~~ 301 (751)
. ..| ...+... ++|++.. ++.+... ..+.|.++++++.. ....+.+.......
T Consensus 365 g---~~p-------h~g~g~~~~~p~~g~-~~~s~~~----------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~ 423 (543)
T 1nir_A 365 G---KTP-------HPGRGANFVHPKYGP-VWSTSHL----------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 423 (543)
T ss_dssp S---SSB-------CCTTCEEEEETTTEE-EEEEEBS----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred C---CCC-------CCCCCcccCCCCCcc-EEEeccC----------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence 0 001 0011233 4788766 5443311 12467888875311 11223333222233
Q ss_pred E-EEEecCCceEEEeeeecc---cceeEEEecCCCCCCcceeeee-------cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 302 S-VSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVLFD-------RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 302 ~-~~~spdg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. +.++|||+.|+....... ....|.++|.++.+...+.+.- .....+.. +.|+|||+.|++..
T Consensus 424 ~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 424 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ------PEYNKRGDEVWFSV 497 (543)
T ss_dssp CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE------EEECSSSSEEEEEE
T ss_pred eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe------ccCCCCCCEEEEEe
Confidence 4 889999999987652111 2457888888876322123210 11122222 88999999999876
Q ss_pred eecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 371 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
+.. ......|.+||.+|++.......
T Consensus 498 ~~~----------------~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 498 WNG----------------KNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp ECC----------------TTSCCEEEEEETTTTEEEEEECC
T ss_pred ecC----------------CCCCCeEEEEECCCceEEEeecC
Confidence 320 11234788999999988766553
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=156.65 Aligned_cols=340 Identities=10% Similarity=0.007 Sum_probs=191.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.++++.+ +.............+...+|||||+.++.. ...+.|.++++.++.......+...
T Consensus 819 ~~v~~~d~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----------~~dg~v~vwd~~~~~~~~~~~~h~~- 883 (1249)
T 3sfz_A 819 NKVLLFDIHT----SGLLAEIHTGHHSTIQYCDFSPYDHLAVIA----------LSQYCVELWNIDSRLKVADCRGHLS- 883 (1249)
T ss_dssp TEEEEEETTT----CCEEEEEECSSSSCCCEEEECSSTTEEEEE----------CSSSCEEEEETTTTEEEEEECCCSS-
T ss_pred CcEEEEEecC----CCceeEEcCCCCCceEEEEEcCCCCEEEEE----------eCCCeEEEEEcCCCceeeecCCCcc-
Confidence 4688899887 666544322334468899999999999885 3346788888888765443332221
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccc--cchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNII--ISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.+..++|+|||+.|+..+.++.-.. ++ ........ ...........+.............+..+
T Consensus 884 ---~v~~v~~spdg~~l~s~s~dg~v~v---w~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 884 ---WVHGVMFSPDGSSFLTASDDQTIRV---WE--------TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949 (1249)
T ss_dssp ---CEEEEEECTTSSEEEEEETTSCEEE---EE--------HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred ---ceEEEEECCCCCEEEEEeCCCeEEE---EE--------ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence 4778999999999988765422110 00 00000000 00000000000000000000000011111
Q ss_pred cC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 163 SL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 163 ~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
.. ++..... ....+..++|||||+++++...+ ..+++|+..++...... ....
T Consensus 950 ~~~~~~~~~~-~~~~i~~~~~sp~g~~l~~g~~~-------------g~i~i~d~~~~~~~~~~------------~~h~ 1003 (1249)
T 3sfz_A 950 AGKTGQIDYL-PEAQVSCCCLSPHLEYVAFGDED-------------GAIKIIELPNNRVFSSG------------VGHK 1003 (1249)
T ss_dssp EESSCCEEEE-CCSCEEEEEECTTSSEEEEEETT-------------SCCEEEETTTTSCEEEC------------CCCS
T ss_pred ecCcceEEEc-ccCcEEEEEEcCCCCEEEEEcCC-------------CCEEEEEcCCCceeeec------------ccCC
Confidence 11 2221111 12457789999999999886543 35789998766443221 1122
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
..+..++|+|||+. ++..+ ..+.|.++++. .+....+......+. +.|+|+++.++.+.
T Consensus 1004 ~~v~~l~~s~dg~~-l~s~~------------~dg~i~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---- 1063 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKT-LISSS------------EDSVIQVWNWQ---TGDYVFLQAHQETVKDFRLLQDSRLLSWSF---- 1063 (1249)
T ss_dssp SCCCCEEECSSSSC-EEEEC------------SSSBEEEEETT---TTEEECCBCCSSCEEEEEECSSSEEEEEES----
T ss_pred CceEEEEECCCCCE-EEEEc------------CCCEEEEEECC---CCceEEEecCCCcEEEEEEcCCCcEEEEEC----
Confidence 34668999999998 55543 23578888875 333334445556667 89999887554433
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEe
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 400 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 400 (751)
...|.+.+..++ ............+.. ++|||||+.|+..+.+ ..|++||
T Consensus 1064 -dg~v~vwd~~~~--~~~~~~~~~~~~v~~------~~~s~d~~~l~s~s~d---------------------~~v~iwd 1113 (1249)
T 3sfz_A 1064 -DGTVKVWNVITG--RIERDFTCHQGTVLS------CAISSDATKFSSTSAD---------------------KTAKIWS 1113 (1249)
T ss_dssp -SSEEEEEETTTT--CCCEEEECCSSCCCC------EEECSSSSSCEEECCS---------------------SCCCEEC
T ss_pred -CCcEEEEECCCC--ceeEEEcccCCcEEE------EEECCCCCEEEEEcCC---------------------CcEEEEE
Confidence 246777787775 222222222222222 8899999998887732 2688889
Q ss_pred cCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 401 INTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 401 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
+.+++.......... .+ ..++|||||+.|+.... -+.|.++|+.+++..
T Consensus 1114 ~~~~~~~~~l~~h~~----~v-------~~~~~s~dg~~lat~~~----dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNG----CV-------RCSAFSLDGILLATGDD----NGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp SSSSSCSBCCCCCSS----CE-------EEEEECSSSSEEEEEET----TSCCCEEESSSSCCC
T ss_pred CCCcceeeeeccCCC----cE-------EEEEECCCCCEEEEEeC----CCEEEEEECCCCceE
Confidence 887765433222110 11 23589999998776542 244888898877643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=131.54 Aligned_cols=272 Identities=12% Similarity=0.101 Sum_probs=152.0
Q ss_pred cceeEEeecCCCCCCCCcc--cccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEK--EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~--~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...|.+|++.+ ++.. .+........+...+|||||++||..+. + ..+.++++.+++.+.+....
T Consensus 37 D~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~--------D--~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 37 DRRIRIWGTEG----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF--------D--ATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp TSCEEEEEEET----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--------T--SCEEEEEECCC-EEEEEEEC
T ss_pred CCeEEEEEcCC----CcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--------C--CcEEEEEccCCCeEEEEEcc
Confidence 34689999977 6432 1111122336889999999999988642 3 44555555555433222112
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+ ...+..++|+|||+.|+..+.+ ..|.+
T Consensus 103 ~h--~~~v~~v~~sp~~~~l~s~s~D-------------------------------------------------~~v~i 131 (345)
T 3fm0_A 103 GH--ENEVKSVAWAPSGNLLATCSRD-------------------------------------------------KSVWV 131 (345)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEE
T ss_pred CC--CCCceEEEEeCCCCEEEEEECC-------------------------------------------------CeEEE
Confidence 11 1147789999999999887543 34566
Q ss_pred EcC-CC-C---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 162 GSL-DG-T---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 162 ~~~-~G-~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
+++ ++ . ...+..+ ..+..++|+|||++|+..+.+ ..+.+|+..+++...+...
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-------------~~i~~w~~~~~~~~~~~~~-------- 190 (345)
T 3fm0_A 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD-------------DTVKLYREEEDDWVCCATL-------- 190 (345)
T ss_dssp EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT-------------SCEEEEEEETTEEEEEEEE--------
T ss_pred EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEecCCCEEEEEEe--------
Confidence 666 33 2 2233344 678899999999998876544 2577888776543222111
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC-CCCCC---------CceEeEe----eceeE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGE---------KPEILHK----LDLRF 301 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---------~~~~l~~----~~~~~ 301 (751)
......+..++|+|||+. |+..+ ..+.|.+++.. +.... ....+.. ....+
T Consensus 191 --~~h~~~v~~l~~sp~g~~-l~s~s------------~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 191 --EGHESTVWSLAFDPSGQR-LASCS------------DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp --CCCSSCEEEEEECTTSSE-EEEEE------------TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred --cCCCCceEEEEECCCCCE-EEEEe------------CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 112234668999999997 55543 12345555431 00000 0011111 23345
Q ss_pred E-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee-ee----ecccccccCCCCCCCeeeCCCCC-EEEEeeeecC
Q 004475 302 S-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV-LF----DRVFENVYSDPGSPMMTRTSTGT-NVIAKIKKEN 374 (751)
Q Consensus 302 ~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-l~----~~~~~~~~~~~~~~~~~~spDG~-~l~~~~~~~~ 374 (751)
. ++|+|++..|+.... ...-++|..+.......+.. +. ......+.. ++|+|++. .|+..+.+
T Consensus 256 ~~v~~~~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~laS~s~D-- 325 (345)
T 3fm0_A 256 YDIAWCQLTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC------VAWNPKEPGLLASCSDD-- 325 (345)
T ss_dssp EEEEECTTTCCEEEEET--TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEE------EEECSSSTTEEEEEETT--
T ss_pred EEEEEecCCCEEEEEeC--CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeE------eEEeCCCceEEEEcCCC--
Confidence 6 899999999887663 33456776654332111111 11 111122222 88999985 66665522
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
..|++|++.+++
T Consensus 326 -------------------g~v~~W~~~~~~ 337 (345)
T 3fm0_A 326 -------------------GEVAFWKYQRPE 337 (345)
T ss_dssp -------------------SCEEEEEECC--
T ss_pred -------------------CcEEEEEecCCC
Confidence 268888887654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-11 Score=137.68 Aligned_cols=284 Identities=9% Similarity=0.081 Sum_probs=173.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC----C-eeeccCCCCccccce-eeeeEEec--CCcEEEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----E-AKPLFESPDICLNAV-FGSFVWVN--NSTLLIF 103 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g----~-~~~lt~~~~~~~~~~-~~~~~wsp--Dg~~l~~ 103 (751)
.+...+|||||++||+.. ...|.+++++++ + .+.+..... . +..++||| ||++|+.
T Consensus 20 ~v~~~~~spdg~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~~h~~-----~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-----------GKSAFVRCLDDGDSKVPPVVQFTGHGS-----SVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-----------TTEEEEEECCSSCCSSCSEEEECTTTT-----SCEEEEEECSSTTCCEEEE
T ss_pred ceeEEEECCCCCEEEEec-----------CCeEEEEECCCCCCccccceEEecCCC-----ceEEEEEECcCCCCCEEEE
Confidence 578899999999999953 257888898877 4 344432222 4 68899999 9999988
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC------C---ceecCC
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG------T---AKDFGT 173 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G------~---~~~lt~ 173 (751)
...+ ..|.++++ +| + ...+..
T Consensus 84 ~~~d-------------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~ 114 (615)
T 1pgu_A 84 GDES-------------------------------------------------GKVIVWGWTFDKESNSVEVNVKSEFQV 114 (615)
T ss_dssp EETT-------------------------------------------------SEEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred ecCC-------------------------------------------------CEEEEEeCCCCcccccccccccchhhc
Confidence 7442 35666666 33 1 223333
Q ss_pred C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
+ ..+..++|+|||++|+....+.. ....+++|+. +.....+.. ....+..+.|+|+
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~---------~~~~v~~~d~-~~~~~~~~~-------------~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRD---------NFGVFISWDS-GNSLGEVSG-------------HSQRINACHLKQS 171 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSS---------CSEEEEETTT-CCEEEECCS-------------CSSCEEEEEECSS
T ss_pred ccccEEEEEEeCCCCEEEEeccCCC---------CccEEEEEEC-CCcceeeec-------------CCccEEEEEECCC
Confidence 3 67889999999999998765421 1246788883 232333321 2234668999999
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecC-CceEEEeeeecccceeEEE
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDD-SLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spd-g~~l~~~~~~~~~~~~l~~ 327 (751)
|+.+++..+ ..+.+.++++.. +.....+..... .+. +.|+|| |+.|+.... ...|.+
T Consensus 172 ~~~~l~~~~------------~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~v 233 (615)
T 1pgu_A 172 RPMRSMTVG------------DDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISC 233 (615)
T ss_dssp SSCEEEEEE------------TTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEE
T ss_pred CCcEEEEEe------------CCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEE
Confidence 996344443 235788888741 122233333444 577 999999 998877652 246777
Q ss_pred ecCCCCCCcceeee-e---cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCC
Q 004475 328 VCPGSKDVAPRVLF-D---RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT 403 (751)
Q Consensus 328 ~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 403 (751)
.++.++ +..... . .....+.. ++|+ ||+.|+..+.+ ..|.+||+.+
T Consensus 234 wd~~~~--~~~~~~~~~~~~~~~~v~~------~~~~-~~~~l~~~~~d---------------------~~i~~wd~~~ 283 (615)
T 1pgu_A 234 FDGKSG--EFLKYIEDDQEPVQGGIFA------LSWL-DSQKFATVGAD---------------------ATIRVWDVTT 283 (615)
T ss_dssp EETTTC--CEEEECCBTTBCCCSCEEE------EEES-SSSEEEEEETT---------------------SEEEEEETTT
T ss_pred EECCCC--CEeEEecccccccCCceEE------EEEc-CCCEEEEEcCC---------------------CcEEEEECCC
Confidence 777664 222222 1 22222222 7799 99988887732 3788999988
Q ss_pred CceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 404 GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 404 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
++....+............. +.++ +++.++.... .+.++++|+.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~l~~~~~----~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVG-------VVAT-GNGRIISLSL----DGTLNFYELGHDEV 331 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEE-------EEEE-ETTEEEEEET----TSCEEEEETTEEEE
T ss_pred CcEEEEEcCCCCcccCceeE-------EEeC-CCCeEEEEEC----CCCEEEEECCCCcE
Confidence 87655544331100001111 2343 6666665432 34577788776543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-11 Score=128.89 Aligned_cols=246 Identities=9% Similarity=0.033 Sum_probs=149.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-------ee
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-------KP 76 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-------~~ 76 (751)
...|.+||+.+ ++.......+. ..+...+|||||+.||... ....+.++++..... +.
T Consensus 85 Dg~v~vWd~~~----~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~----------~d~~i~v~~~~~~~~~~~~~~~~~ 149 (354)
T 2pbi_B 85 DGKVIVWDSFT----TNKEHAVTMPC-TWVMACAYAPSGCAIACGG----------LDNKCSVYPLTFDKNENMAAKKKS 149 (354)
T ss_dssp TSEEEEEETTT----CCEEEEEECSS-SCCCEEEECTTSSEEEEES----------TTSEEEEEECCCCTTCCSGGGCEE
T ss_pred CCeEEEEECCC----CCcceEEecCC-CCEEEEEECCCCCEEEEee----------CCCCEEEEEEecccccccccccee
Confidence 34688999877 66554332222 3588999999999998853 234555555543211 11
Q ss_pred ccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhee
Q 004475 77 LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (751)
Q Consensus 77 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (751)
+.... ..+..++|+|+++.|+..+.+
T Consensus 150 ~~~h~-----~~v~~~~~~~~~~~l~t~s~D------------------------------------------------- 175 (354)
T 2pbi_B 150 VAMHT-----NYLSACSFTNSDMQILTASGD------------------------------------------------- 175 (354)
T ss_dssp EEECS-----SCEEEEEECSSSSEEEEEETT-------------------------------------------------
T ss_pred eeccC-----CcEEEEEEeCCCCEEEEEeCC-------------------------------------------------
Confidence 11111 136788999999988877542
Q ss_pred eEEEEEcC-CCCc-eecCCC-ceEEeeeeCC--CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~-~~~~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
..|.++|+ +|+. ..+..+ ..+..+.|+| +|+.|+..+.+ ..+.+||+.+++.....
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D-------------g~v~~wd~~~~~~~~~~------ 236 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD-------------KKAMVWDMRSGQCVQAF------ 236 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT-------------SCEEEEETTTCCEEEEE------
T ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEe------
Confidence 46788888 6643 444444 5666777766 57777765443 36889999876543221
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee---ceeEE-EEEec
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFS-VSWCD 307 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~---~~~~~-~~~sp 307 (751)
......+..++|+|+|+. ++..+ ..+.+.++++. ......+... ..... +.|+|
T Consensus 237 ------~~h~~~v~~v~~~p~~~~-l~s~s------------~D~~v~lwd~~---~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 237 ------ETHESDVNSVRYYPSGDA-FASGS------------DDATCRLYDLR---ADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp ------CCCSSCEEEEEECTTSSE-EEEEE------------TTSCEEEEETT---TTEEEEEECCTTCCSCEEEEEECT
T ss_pred ------cCCCCCeEEEEEeCCCCE-EEEEe------------CCCeEEEEECC---CCcEEEEEcCCCcccceeEEEEeC
Confidence 112234668999999987 55543 23567888874 2221111111 12345 89999
Q ss_pred CCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 308 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+|+.|+.... ...|.+.++.++ ............+.. ++|||||++|+..+.
T Consensus 295 ~g~~l~~g~~----d~~i~vwd~~~~--~~~~~l~~h~~~v~~------l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 295 SGRLLFAGYN----DYTINVWDVLKG--SRVSILFGHENRVST------LRVSPDGTAFCSGSW 346 (354)
T ss_dssp TSSEEEEEET----TSCEEEEETTTC--SEEEEECCCSSCEEE------EEECTTSSCEEEEET
T ss_pred CCCEEEEEEC----CCcEEEEECCCC--ceEEEEECCCCcEEE------EEECCCCCEEEEEcC
Confidence 9998877652 235666676554 222222222222333 889999999988873
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-12 Score=132.57 Aligned_cols=238 Identities=16% Similarity=0.115 Sum_probs=141.8
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
+...+|||||++||... ....|.++++++++......+... .+..++|+|||+.|+..+.+
T Consensus 126 v~~v~~s~dg~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~d----- 186 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGA----------EDRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGDKLVSGSGD----- 186 (393)
T ss_dssp EEEEEECTTSSEEEEEE----------TTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEECCCCCEEEEEc----------CCCeEEEEECCCCcEEEEEccCCC----CEEEEEEcCCCCEEEEecCC-----
Confidence 67889999999998853 346788889988876554433322 37789999999999877442
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCCceEEeeeeCC-CCceE
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSP-DQKYV 189 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~~~~~~~~~Sp-DG~~i 189 (751)
..|.++|+ +|+. ..+.....+..++|+| ||++|
T Consensus 187 --------------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 187 --------------------------------------------RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp --------------------------------------------SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred --------------------------------------------CcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 46778888 6643 3333336778899999 89988
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
+..+.+ ..+.+||..++........... ........+..++|+|||+. |+..+
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~~-----~~~~h~~~v~~v~~~~~g~~-l~s~s-------- 275 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSENE-----SGTGHKDSVYSVVFTRDGQS-VVSGS-------- 275 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC-----------CCCSSCEEEEEECTTSSE-EEEEE--------
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeeccccc-----CCCCCCCCEEEEEECCCCCE-EEEEe--------
Confidence 876543 3588999987653321111000 00112234678999999997 55543
Q ss_pred cccCcccceeeccCCCCC----------CCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcce
Q 004475 270 VEVSPRDIIYTQPAEPAE----------GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 338 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~----------~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 338 (751)
..+.|.++++.... +.....+......+. +.|+|++++|+..+. ...|.+.+..++ ...
T Consensus 276 ----~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~----D~~v~iwd~~~~--~~~ 345 (393)
T 1erj_A 276 ----LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----DRGVLFWDKKSG--NPL 345 (393)
T ss_dssp ----TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----TSEEEEEETTTC--CEE
T ss_pred ----CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCC--eEE
Confidence 23567777764110 000112223344456 899999998886552 246777777764 222
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.........+......+...|+||++.|+..+
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 22222222222200001122456888887777
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=137.16 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=127.1
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
+...+|||||++||..+. .....|.++++++++......... .+..++|||||++|+..+.
T Consensus 136 ~~~v~fSpDg~~la~as~--------~~d~~i~iwd~~~~~~~~~~~~~~-----~V~~v~fspdg~~l~s~s~------ 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS--------KVPAIMRIIDPSDLTEKFEIETRG-----EVKDLHFSTDGKVVAYITG------ 196 (365)
T ss_dssp EEEEEECTTSSCEEEEES--------CSSCEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSSEEEEECS------
T ss_pred EEEEEEcCCCCEEEEEEC--------CCCCEEEEeECCCCcEEEEeCCCC-----ceEEEEEccCCceEEeccc------
Confidence 456899999999998653 344789999999887655433322 3778999999999988743
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecC--CC-ceEEeeeeCCCCc
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG--TP-AVYTAVEPSPDQK 187 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt--~~-~~~~~~~~SpDG~ 187 (751)
..+.+++. +|+. ...+ .+ ..+..++|+|||+
T Consensus 197 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 197 --------------------------------------------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp --------------------------------------------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred --------------------------------------------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 13444444 6632 2222 22 5678999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.++..+.+.. ....++.|+........+.... +......+..++|||||+. |+..+
T Consensus 233 ~l~~~s~d~~---------~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~V~~~~~Spdg~~-lasgs------ 288 (365)
T 4h5i_A 233 VLIAASLKKG---------KGIVLTKISIKSGNTSVLRSKQ--------VTNRFKGITSMDVDMKGEL-AVLAS------ 288 (365)
T ss_dssp EEEEEEESSS---------CCEEEEEEEEETTEEEEEEEEE--------EESSCSCEEEEEECTTSCE-EEEEE------
T ss_pred EEEEEecCCc---------ceeEEeecccccceecceeeee--------ecCCCCCeEeEEECCCCCc-eEEEc------
Confidence 9988765532 1234667777654332111000 1111233568999999998 66654
Q ss_pred CccccCcccceeeccCCCCCCCC-ceEe-EeeceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEK-PEIL-HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~-~~~l-~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
..+.|.+++++ .+. ...+ ..+...+. ++|||||++|+..+. +..-+||.++.
T Consensus 289 ------~D~~V~iwd~~---~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~--D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 ------NDNSIALVKLK---DLSMSKIFKQAHSFAITEVTISPDSTYVASVSA--ANTIHIIKLPL 343 (365)
T ss_dssp ------TTSCEEEEETT---TTEEEEEETTSSSSCEEEEEECTTSCEEEEEET--TSEEEEEECCT
T ss_pred ------CCCEEEEEECC---CCcEEEEecCcccCCEEEEEECCCCCEEEEEeC--CCeEEEEEcCC
Confidence 23578889885 222 2222 23455677 999999999987663 33346666543
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-14 Score=141.37 Aligned_cols=168 Identities=11% Similarity=0.105 Sum_probs=106.3
Q ss_pred hCCeEEEEcCCCCCCCCCCCC-CC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 552 ARRFAVLAGPSIPIIGEGDKL-PN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~-~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
.+||.|++ ++.+|+|.+. .. .....+..+|+.++++.+ ..+++.++||||||.+|+.+|.++|+++++
T Consensus 67 ~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 137 (292)
T 3l80_A 67 PDSIGILT---IDAPNSGYSPVSNQANVGLRDWVNAILMIFEHF------KFQSYLLCVHSIGGFAALQIMNQSSKACLG 137 (292)
T ss_dssp CTTSEEEE---ECCTTSTTSCCCCCTTCCHHHHHHHHHHHHHHS------CCSEEEEEEETTHHHHHHHHHHHCSSEEEE
T ss_pred hhcCeEEE---EcCCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCCeEEEEEchhHHHHHHHHHhCchheee
Confidence 47999999 5666777765 22 223455666666665544 235899999999999999999999999999
Q ss_pred EEEccCCCCCCC----Cc---------cCcccc----------cccchh--------------hHHHHHhcCc-------
Q 004475 629 GIARSGSYNKTL----TP---------FGFQTE----------FRTLWE--------------ATNVYIEMSP------- 664 (751)
Q Consensus 629 ~v~~~~~~d~~~----~~---------~~~~~~----------~~~~~~--------------~~~~~~~~~~------- 664 (751)
+|+++|...... .. ...... ....|- ....+....+
T Consensus 138 lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (292)
T 3l80_A 138 FIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIR 217 (292)
T ss_dssp EEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSS
T ss_pred EEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchh
Confidence 999994321000 00 000000 000000 0001111121
Q ss_pred --------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHH
Q 004475 665 --------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 736 (751)
Q Consensus 665 --------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 736 (751)
...+.+ ++|+|+++|++|..++ .. + .+. +.-...+ +++++++|.+. .+..+.+.+.+.+||
T Consensus 218 ~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~--~~-~-~~~----~~~~~~~-~~~~~~gH~~~-~e~p~~~~~~i~~fl 286 (292)
T 3l80_A 218 LALGEEDFKTGISE-KIPSIVFSESFREKEY--LE-S-EYL----NKHTQTK-LILCGQHHYLH-WSETNSILEKVEQLL 286 (292)
T ss_dssp CCCCGGGGCCCCCT-TSCEEEEECGGGHHHH--HT-S-TTC----CCCTTCE-EEECCSSSCHH-HHCHHHHHHHHHHHH
T ss_pred hhhcchhhhhccCC-CCCEEEEEccCccccc--hH-H-HHh----ccCCCce-eeeCCCCCcch-hhCHHHHHHHHHHHH
Confidence 123345 8999999999999887 55 3 333 2223346 89999999875 466788899999999
Q ss_pred HHH
Q 004475 737 QKY 739 (751)
Q Consensus 737 ~~~ 739 (751)
+++
T Consensus 287 ~~~ 289 (292)
T 3l80_A 287 SNH 289 (292)
T ss_dssp HTC
T ss_pred Hhc
Confidence 854
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-12 Score=128.17 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=130.3
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCC--------CC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS--------IP 564 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~--------~~ 564 (751)
.+.+.+++|.+ ++|.|+||.+||+. . ...+||+++..++ .+
T Consensus 124 sf~~~i~lP~g-----~~P~Pvii~~~~~~----------------~----------~~~~G~A~i~f~~~~va~d~~~g 172 (433)
T 4g4g_A 124 SFSASIRKPSG-----AGPFPAIIGIGGAS----------------I----------PIPSNVATITFNNDEFGAQMGSG 172 (433)
T ss_dssp EEEEEEECCSS-----SCCEEEEEEESCCC----------------S----------CCCTTSEEEEECHHHHSCCSSGG
T ss_pred EEEEEEECCCC-----CCCccEEEEECCCc----------------c----------ccCCCeEEEEeCCcccccccCCC
Confidence 46999999976 46799999999741 0 0357999988433 11
Q ss_pred CCCCCCC------CCCchhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 565 IIGEGDK------LPNDRFVEQLVSSAEAAVEEVVR----RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 565 ~~g~g~~------~~~~~~~~~~~~d~~~~v~~l~~----~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
.+|+|.- ...........-++.++++||.+ ++.||++||+++|||+||..|+++++.. ++|+++|+.++
T Consensus 173 srG~g~f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~s 251 (433)
T 4g4g_A 173 SRGQGKFYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQES 251 (433)
T ss_dssp GTTCSHHHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESC
T ss_pred cCCccccccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecC
Confidence 2232210 00111123345688999999999 8899999999999999999999999999 68999999886
Q ss_pred CCCCCCC-c-------cCcc--c----ccccchhhHHHHHhcC------ccccc---CC-CCCCEEEEEcCCCCCCCCCh
Q 004475 635 SYNKTLT-P-------FGFQ--T----EFRTLWEATNVYIEMS------PITHA---NK-IKKPILIIHGEVDDKVGLFP 690 (751)
Q Consensus 635 ~~d~~~~-~-------~~~~--~----~~~~~~~~~~~~~~~~------~~~~~---~~-~~~P~li~~G~~D~~vp~~~ 690 (751)
..+-... . .+.. . .....|-.+ .+..+. |+.+. .- ...|+|++.| +|...+ +
T Consensus 252 g~~G~~~~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~-~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~--p 327 (433)
T 4g4g_A 252 GAGGAACWRISDQQKAAGANIQTAAQIITENPWFSR-NFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLG--P 327 (433)
T ss_dssp CTTTTSCHHHHHHHHHTTCCCCCHHHHTTTCCCSCT-TTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTC--H
T ss_pred CCCchhhhhhchhhcccCcchhhhhcccCCccccch-hhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCC--c
Confidence 5331100 0 0000 0 000122111 111111 11110 00 1478999999 887776 6
Q ss_pred HHHHHHHHHH----H--hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCCCCCCC
Q 004475 691 MQAERFFDAL----K--GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDGK 748 (751)
Q Consensus 691 ~~~~~~~~~l----~--~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~ 748 (751)
......+.++ + ....++.+.+.++.+|... .. .....+.+||+++|+....+.+
T Consensus 328 ~g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~f-p~---~~r~~~~~F~~k~Lkg~~~~t~ 387 (433)
T 4g4g_A 328 VSTTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQF-PS---SQNQDLNSYINYFLLGQGSPSG 387 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCC-CG---GGHHHHHHHHHHHTTCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccC-CH---HHHHHHHHHHHHHhCCCCCCCc
Confidence 6544333332 1 2334677777666667542 22 2346788999999987655443
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-14 Score=142.27 Aligned_cols=193 Identities=13% Similarity=0.011 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....| ..+...|.+ ||.|++ ++.+|+|.+... .....+..+++.+++
T Consensus 51 ~~~lvllHG~~~-----------~~~~~----~~l~~~L~~-~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~~~~~l 111 (280)
T 3qmv_A 51 PLRLVCFPYAGG-----------TVSAF----RGWQERLGD-EVAVVP---VQLPGRGLRLRERPYDTMEPLAEAVADAL 111 (280)
T ss_dssp SEEEEEECCTTC-----------CGGGG----TTHHHHHCT-TEEEEE---CCCTTSGGGTTSCCCCSHHHHHHHHHHHH
T ss_pred CceEEEECCCCC-----------ChHHH----HHHHHhcCC-CceEEE---EeCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 488999999641 11222 133445554 999999 566677765332 223455566665555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee----EEEEccCCCCCCCCccCccccc----------------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC----CGIARSGSYNKTLTPFGFQTEF---------------- 649 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~----~~v~~~~~~d~~~~~~~~~~~~---------------- 649 (751)
+.+. ...++.|+||||||.+|+.+|.++|+++. .+++..+...............
T Consensus 112 ~~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (280)
T 3qmv_A 112 EEHR-----LTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDD 186 (280)
T ss_dssp HHTT-----CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC-
T ss_pred HHhC-----CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCCh
Confidence 5442 23689999999999999999999887665 5555443211000000000000
Q ss_pred ---------ccch----hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 004475 650 ---------RTLW----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716 (751)
Q Consensus 650 ---------~~~~----~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (751)
.... ........+. ...+..+++|+|+++|++|..+| ...+..+.+.+ ...++++++++ +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~~~g-g 259 (280)
T 3qmv_A 187 ADTLGAAYFDRRLPVLRADLRACERYD-WHPRPPLDCPTTAFSAAADPIAT--PEMVEAWRPYT---TGSFLRRHLPG-N 259 (280)
T ss_dssp --------CCTTHHHHHHHHHHHHTCC-CCCCCCBCSCEEEEEEEECSSSC--HHHHHTTGGGB---SSCEEEEEEEE-E
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHhcc-ccCCCceecCeEEEEecCCCCcC--hHHHHHHHHhc---CCceEEEEecC-C
Confidence 0000 0000111111 11246789999999999999998 77766555433 23467888886 8
Q ss_pred CcCCc-cccHHHHHHHHHHH
Q 004475 717 HVYAA-RENVMHVIWETDRW 735 (751)
Q Consensus 717 H~~~~-~~~~~~~~~~~~~f 735 (751)
|.... .+....+.+.+.+|
T Consensus 260 H~~~~~~~~~~~~~~~i~~~ 279 (280)
T 3qmv_A 260 HFFLNGGPSRDRLLAHLGTE 279 (280)
T ss_dssp TTGGGSSHHHHHHHHHHHTT
T ss_pred CeEEcCchhHHHHHHHHHhh
Confidence 88753 24455566666555
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-13 Score=132.18 Aligned_cols=198 Identities=15% Similarity=0.054 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+. ....|. .+... ++.+|.|++ +|.+|+|.+... ........+|+.+++
T Consensus 27 ~p~vvllHG~~~--------------~~~~w~-~~~~~-L~~~~rvia---~DlrGhG~S~~~~~~~~~~~~a~dl~~ll 87 (276)
T 2wj6_A 27 GPAILLLPGWCH--------------DHRVYK-YLIQE-LDADFRVIV---PNWRGHGLSPSEVPDFGYQEQVKDALEIL 87 (276)
T ss_dssp SCEEEEECCTTC--------------CGGGGH-HHHHH-HTTTSCEEE---ECCTTCSSSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCC--------------cHHHHH-HHHHH-HhcCCEEEE---eCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 378999999541 111111 22333 446799999 677788887543 223567788888888
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCCc-----------cCccc---ccccchh
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLTP-----------FGFQT---EFRTLWE 654 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~~~~d~~~~~-----------~~~~~---~~~~~~~ 654 (751)
+.+ +.+++.++||||||.+|+.+|.++ |++++++|++++........ ..+.. .....|.
T Consensus 88 ~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 2wj6_A 88 DQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGTHGLFDVWL 161 (276)
T ss_dssp HHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred HHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchHHHHHHHHHHHhh
Confidence 776 235899999999999999999999 99999999987642100000 00000 0000000
Q ss_pred ----h---------------HHH-----------HHh-cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC
Q 004475 655 ----A---------------TNV-----------YIE-MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 703 (751)
Q Consensus 655 ----~---------------~~~-----------~~~-~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~ 703 (751)
. ... +.. ..+...+.++++|+++++|..|...+........+. +.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~~~~~~~~----~~ 237 (276)
T 2wj6_A 162 DGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINSDFA----EQ 237 (276)
T ss_dssp TTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHHHHHHHHH----HH
T ss_pred cccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHHHHHHHHH----hh
Confidence 0 000 000 011234567889999988754433220011222332 22
Q ss_pred CCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 704 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 704 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
-...+++++|++||... .+..+.+...+.+||.+.
T Consensus 238 ~p~a~~~~i~~~gH~~~-~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 238 HPWFSYAKLGGPTHFPA-IDVPDRAAVHIREFATAI 272 (276)
T ss_dssp CTTEEEEECCCSSSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCccc-ccCHHHHHHHHHHHHhhc
Confidence 24579999999999865 566888999999999764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=140.76 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=132.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||... ....|.++++.+++.+.+.....+ ...+..++|+|||++|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d---- 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT----------ATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQD---- 76 (377)
T ss_dssp CCSCCEECSSSSEEECCC----------SSSCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETT----
T ss_pred cEEEEEECCCCCEEEEec----------CCCEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCC----
Confidence 578899999999998842 335666667667632332222221 1147789999999999887542
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC----ceecCCC-ceEEeeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT----AKDFGTP-AVYTAVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~----~~~lt~~-~~~~~~~~SpD 185 (751)
..|.++++ +++ ...+..+ ..+..++|+||
T Consensus 77 ---------------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (377)
T 3dwl_C 77 ---------------------------------------------RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN 111 (377)
T ss_dssp ---------------------------------------------SSEEEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred ---------------------------------------------CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence 35677777 444 3334444 77889999999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCce----eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
|++|+....+ ..+.+|++++++ .+.+.. .....+..++|+|||+. |+..+
T Consensus 112 ~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~-l~~~~ 165 (377)
T 3dwl_C 112 EDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKR------------PLRSTILSLDWHPNNVL-LAAGC 165 (377)
T ss_dssp SSCCEEEESS-------------SCEEECCC-----CCCCEEECS------------SCCSCEEEEEECTTSSE-EEEEE
T ss_pred CCEEEEEecC-------------CeEEEEEECCcccceeeeEeec------------ccCCCeEEEEEcCCCCE-EEEEe
Confidence 9999887543 358899988764 222221 02234668999999987 55543
Q ss_pred eccCCCCccccCcccceeeccCCCCC--CC----------C-ceEeE--eeceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAE--GE----------K-PEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~----------~-~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
..+.|.++++.... .. . ...+. .....+. +.|+|||+.|+.... ...|
T Consensus 166 ------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~i 229 (377)
T 3dwl_C 166 ------------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH----DSSV 229 (377)
T ss_dssp ------------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET----TTEE
T ss_pred ------------CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC----CCcE
Confidence 22456777653100 00 0 01111 3344566 999999999887662 2355
Q ss_pred EEecCCCCCCcc--eeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 326 WLVCPGSKDVAP--RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 326 ~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+.++.++.... ..........+.. ++|+|||+.|+...
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRS------LLWANESAIVAAGY 270 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEE------EEEEETTEEEEEES
T ss_pred EEEECCCCCCcceeeEeecCCCCceEE------EEEcCCCCEEEEEc
Confidence 566665541111 1111121122222 78999999887655
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-12 Score=133.35 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=167.1
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEec-CCcEEEEeecCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~ 110 (751)
...+++|+...+++.. ...+.|.++++..... ..+.....+ ...+..++|+| +++.|+..+.+
T Consensus 38 ~~~~~~~~~~~~~~~~---------~~~g~i~v~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~~~~~l~s~s~d--- 103 (402)
T 2aq5_A 38 GFCAVNPKFMALICEA---------SGGGAFLVLPLGKTGRVDKNVPLVCGH--TAPVLDIAWCPHNDNVIASGSED--- 103 (402)
T ss_dssp CSEEECSSEEEEEBCC---------SSSCCEEEEETTCCEECCTTCCCBCCC--SSCEEEEEECTTCTTEEEEEETT---
T ss_pred CcEEECCCeEEEEEEE---------cCCCEEEEEECccCCCCCCCCceEecC--CCCEEEEEeCCCCCCEEEEEeCC---
Confidence 3466777655544422 4457888888754321 111111111 12478899999 88888877442
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC--------ceecCCC-ceEEee
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--------AKDFGTP-AVYTAV 180 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~--------~~~lt~~-~~~~~~ 180 (751)
..|.++++ +++ ...+..+ ..+..+
T Consensus 104 ----------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 137 (402)
T 2aq5_A 104 ----------------------------------------------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137 (402)
T ss_dssp ----------------------------------------------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred ----------------------------------------------CeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence 35677777 441 2344444 678899
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
+|+|||+.++++... ...+.+||+.+++....... ......+..++|+|||+. |+..
T Consensus 138 ~~~p~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~-l~~~ 194 (402)
T 2aq5_A 138 AWHPTAQNVLLSAGC------------DNVILVWDVGTGAAVLTLGP----------DVHPDTIYSVDWSRDGAL-ICTS 194 (402)
T ss_dssp EECSSBTTEEEEEET------------TSCEEEEETTTTEEEEEECT----------TTCCSCEEEEEECTTSSC-EEEE
T ss_pred EECcCCCCEEEEEcC------------CCEEEEEECCCCCccEEEec----------CCCCCceEEEEECCCCCE-EEEE
Confidence 999999644444332 34689999987654432110 111233568999999998 5654
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEe-Eeecee-EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLR-FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 337 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~-~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (751)
. ..+.|+++++.. +.....+ ...... .. +.|+|||+.|+.+... .....|.+.++.+. ..+
T Consensus 195 ~------------~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~-~~~ 258 (402)
T 2aq5_A 195 C------------RDKRVRVIEPRK--GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHL-EEP 258 (402)
T ss_dssp E------------TTSEEEEEETTT--TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBC-SSC
T ss_pred e------------cCCcEEEEeCCC--CceeeeeccCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccc-cCC
Confidence 4 235788998851 2222222 122222 45 8999999988775311 23457778888764 222
Q ss_pred eeeee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc--eeEEeeccc
Q 004475 338 RVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS--KERIWESNR 414 (751)
Q Consensus 338 ~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~ 414 (751)
..+.. .....+.. ++|+|||+.|++... ....|.+||+.+++ ...+.....
T Consensus 259 ~~~~~~~~~~~v~~------~~~s~~~~~l~~~g~--------------------~dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 259 LSLQELDTSSGVLL------PFFDPDTNIVYLCGK--------------------GDSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp SEEEECCCCSSCEE------EEEETTTTEEEEEET--------------------TCSCEEEEEECSSTTCEEEEEEECC
T ss_pred ceEEeccCCCceeE------EEEcCCCCEEEEEEc--------------------CCCeEEEEEecCCCcceEeeccccc
Confidence 22222 11111222 789999999877661 12368889998876 333322211
Q ss_pred hhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 415 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
......++|+||+..++. . -..+.++++.+++.+.+
T Consensus 313 ----------~~~v~~~~~sp~~~~~~s---~---~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 313 ----------KESQRGMGYMPKRGLEVN---K---CEIARFYKLHERKCEPI 348 (402)
T ss_dssp ----------SSCCSEEEECCGGGSCGG---G---TEEEEEEEEETTEEEEE
T ss_pred ----------CCcccceEEeccccccee---c---ceeEEEEEcCCCcEEEE
Confidence 111233689999987552 1 12466666666655443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-11 Score=123.70 Aligned_cols=311 Identities=9% Similarity=0.024 Sum_probs=166.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCC-cccccceeecCCC-CeEEEEEeecccccccCCceeEEEEEcCCCCe------eec
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEA------KPL 77 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~------~~l 77 (751)
++|++.... -+.+....|.+ ...+...+||||+ +.||..+ ....|.++++..++. +.+
T Consensus 17 ~~~~~~~~~----~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s----------~D~~i~vWd~~~~~~~~~~~~~~l 82 (340)
T 4aow_A 17 NLYFQSMMT----EQMTLRGTLKGHNGWVTQIATTPQFPDMILSAS----------RDKTIIMWKLTRDETNYGIPQRAL 82 (340)
T ss_dssp -------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEE----------TTSCEEEEEECCSSSCSEEEEEEE
T ss_pred cEEEEEccC----CceEEEEEECCccCCEEEEEEeCCCCCEEEEEc----------CCCeEEEEECCCCCcccceeeEEE
Confidence 566666655 33222111222 2368899999995 5666543 224566666655431 112
Q ss_pred cCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
..... .+..++|+|||+.|+..+.+ .
T Consensus 83 ~~h~~-----~V~~~~~s~dg~~l~s~~~d-------------------------------------------------~ 108 (340)
T 4aow_A 83 RGHSH-----FVSDVVISSDGQFALSGSWD-------------------------------------------------G 108 (340)
T ss_dssp CCCSS-----CEEEEEECTTSSEEEEEETT-------------------------------------------------S
T ss_pred eCCCC-----CEEEEEECCCCCEEEEEccc-------------------------------------------------c
Confidence 11111 47789999999999877442 3
Q ss_pred EEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
.|..++. .+ ........ .......++|+++.|+....+ ..+.+|+..+.........
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~------- 168 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDE------- 168 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSS-------
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEEEEec-------
Confidence 5666666 33 22222222 566678899999998876543 3577888876544322111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
.....+..+.|++++...+++... ..+.|.++++.. +.....+......+. +.|+|||+.|+
T Consensus 169 ----~~~~~v~~~~~~~~~~~~~~~s~~-----------~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 169 ----SHSEWVSCVRFSPNSSNPIIVSCG-----------WDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp ----SCSSCEEEEEECSCSSSCEEEEEE-----------TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ----cccCcccceEEccCCCCcEEEEEc-----------CCCEEEEEECCC--CceeeEecCCCCcEEEEEECCCCCEEE
Confidence 112234577899998764444321 224677788741 222233334455677 99999999887
Q ss_pred EeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 393 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (751)
.+.. ...|.+.++.+. ......... ..+.. +.|+|++..|+... +
T Consensus 232 s~s~----Dg~i~iwd~~~~--~~~~~~~~~-~~v~~------~~~~~~~~~~~~~~-d--------------------- 276 (340)
T 4aow_A 232 SGGK----DGQAMLWDLNEG--KHLYTLDGG-DIINA------LCFSPNRYWLCAAT-G--------------------- 276 (340)
T ss_dssp EEET----TCEEEEEETTTT--EEEEEEECS-SCEEE------EEECSSSSEEEEEE-T---------------------
T ss_pred EEeC----CCeEEEEEeccC--ceeeeecCC-ceEEe------eecCCCCceeeccC-C---------------------
Confidence 6552 245667777664 222222211 11111 67999987654433 1
Q ss_pred ceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 394 PFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 394 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
..|.+||+.++........... .............++|||||+.|+... .. +.|+++++.+|+
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D---g~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVI--STSSKAEPPQCTSLAWSADGQTLFAGY-TD---NLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEE-TT---SCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccce--eeeccCCCCCEEEEEECCCCCEEEEEe-CC---CEEEEEeCCCcC
Confidence 2688899987654333222110 000000011112368999999776543 22 458888888774
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-12 Score=133.57 Aligned_cols=253 Identities=12% Similarity=-0.000 Sum_probs=149.3
Q ss_pred cceeEEeecCCCCCCCCc-ccccCCC-CcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCe------
Q 004475 4 FTGIGIHRLLPDDSLGPE-KEVHGYP-DGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA------ 74 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~-~~l~~~~-~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~------ 74 (751)
...|.+|++.. . |+. ..+..+. ....+...+||| ||+.||..+ ..+.|.++++.+++.
T Consensus 56 ~g~i~v~~~~~--~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s----------~dg~v~vw~~~~~~~~~~~~~ 122 (402)
T 2aq5_A 56 GGAFLVLPLGK--T-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS----------EDCTVMVWEIPDGGLVLPLRE 122 (402)
T ss_dssp SCCEEEEETTC--C-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE----------TTSEEEEEECCTTCCSSCBCS
T ss_pred CCEEEEEECcc--C-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe----------CCCeEEEEEccCCCCccccCC
Confidence 34788999865 1 221 1222122 233688999999 888888753 336777788877632
Q ss_pred --eeccCCCCccccceeeeeEEecCCc-EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhh
Q 004475 75 --KPLFESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (751)
Q Consensus 75 --~~lt~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (751)
..+..... .+..++|+|+|+ .|+..+.+
T Consensus 123 ~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~d-------------------------------------------- 153 (402)
T 2aq5_A 123 PVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCD-------------------------------------------- 153 (402)
T ss_dssp CSEEEECCSS-----CEEEEEECSSBTTEEEEEETT--------------------------------------------
T ss_pred ceEEecCCCC-----eEEEEEECcCCCCEEEEEcCC--------------------------------------------
Confidence 22221121 467899999995 55554322
Q ss_pred hhheeeEEEEEcC-CCC-ceec--CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeec-
Q 004475 152 DYYTTAQLVLGSL-DGT-AKDF--GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC- 225 (751)
Q Consensus 152 ~~~~~~~l~~~~~-~G~-~~~l--t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~- 225 (751)
..|.++|+ +++ ...+ ..+ ..+..++|+|||++|+....+ ..|.+||+.+++.....
T Consensus 154 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~ 215 (402)
T 2aq5_A 154 -----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKD 215 (402)
T ss_dssp -----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEE
T ss_pred -----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeec
Confidence 46778888 663 3444 334 778899999999999887543 36899999876543321
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS- 302 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~- 302 (751)
.... ...+..+.|+|||+. ++.... ....+.|.++++.. ...+..+. .....+.
T Consensus 216 ~~~~-----------~~~~~~~~~~~~~~~-l~~g~~---------~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 216 RPHE-----------GTRPVHAVFVSEGKI-LTTGFS---------RMSERQVALWDTKH--LEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp CSSC-----------SSSCCEEEECSTTEE-EEEEEC---------TTCCEEEEEEETTB--CSSCSEEEECCCCSSCEE
T ss_pred cCCC-----------CCcceEEEEcCCCcE-EEEecc---------CCCCceEEEEcCcc--ccCCceEEeccCCCceeE
Confidence 1110 012457899999986 444310 01235888888852 12222222 2334455
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-cccccCCCCCCCeeeCCCCCEEEE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIA 368 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spDG~~l~~ 368 (751)
+.|+|||+.|+.+.. ....|.++++.++......+.... ...+.. ++|+|||..++.
T Consensus 273 ~~~s~~~~~l~~~g~---~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~------~~~sp~~~~~~s 330 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGK---GDSSIRYFEITSEAPFLHYLSMFSSKESQRG------MGYMPKRGLEVN 330 (402)
T ss_dssp EEEETTTTEEEEEET---TCSCEEEEEECSSTTCEEEEEEECCSSCCSE------EEECCGGGSCGG
T ss_pred EEEcCCCCEEEEEEc---CCCeEEEEEecCCCcceEeecccccCCcccc------eEEeccccccee
Confidence 899999999876552 123566666666411123333221 122222 889999987653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=151.76 Aligned_cols=280 Identities=10% Similarity=0.103 Sum_probs=173.7
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
..+...+|||||++||..+ ..+.|.++++.+++.......... .+..++|||||++|+..+.+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~d--- 678 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCG----------ADKTLQVFKAETGEKLLDIKAHED----EVLCCAFSSDDSYIATCSAD--- 678 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEETT---
T ss_pred ccEEEEEECCCCCEEEEEe----------CCCeEEEEECCCCCEEEEeccCCC----CEEEEEEecCCCEEEEEeCC---
Confidence 3678899999999998863 336788889988875443332221 47889999999999887432
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|.++|+ +|+ ...+..+ ..+..++|+|+++
T Consensus 679 ----------------------------------------------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 679 ----------------------------------------------KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp ----------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence 47888888 664 3445445 7788999999765
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
..++.+... ...+.+||+.+++...... .....+..++|+|||+. ++..+
T Consensus 713 ~~~l~sg~~-----------d~~v~vwd~~~~~~~~~~~------------~h~~~v~~~~~sp~~~~-l~s~s------ 762 (1249)
T 3sfz_A 713 HLLLATGSN-----------DFFLKLWDLNQKECRNTMF------------GHTNSVNHCRFSPDDEL-LASCS------ 762 (1249)
T ss_dssp CCEEEEEET-----------TSCEEEEETTSSSEEEEEC------------CCSSCEEEEEECSSTTE-EEEEE------
T ss_pred ceEEEEEeC-----------CCeEEEEECCCcchhheec------------CCCCCEEEEEEecCCCE-EEEEE------
Confidence 433332221 3468899998765432211 12233568999999997 55543
Q ss_pred CccccCcccceeeccCCCCCCCCceEeE-------------eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH-------------KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------------~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..+.|.++++.. +.....+. .....+. ++|+|||+.|+... ...+.+++..++
T Consensus 763 ------~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 763 ------ADGTLRLWDVRS--ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVLLFDIHTS 829 (1249)
T ss_dssp ------SSSEEEEEEGGG--TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEEEEETTTC
T ss_pred ------CCCeEEEEeCCC--CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEEEEEecCC
Confidence 234677777641 11111111 0111334 78999999988766 236777787774
Q ss_pred CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 334 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
.....+.......+.. ++|+|+|+.++.... ...+.+||+.++.........
T Consensus 830 -~~~~~~~~~~~~~v~~------~~~sp~~~~l~~~~~---------------------dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 830 -GLLAEIHTGHHSTIQY------CDFSPYDHLAVIALS---------------------QYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp -CEEEEEECSSSSCCCE------EEECSSTTEEEEECS---------------------SSCEEEEETTTTEEEEEECCC
T ss_pred -CceeEEcCCCCCceEE------EEEcCCCCEEEEEeC---------------------CCeEEEEEcCCCceeeecCCC
Confidence 2222222222222222 789999999888772 236889999887654443322
Q ss_pred chhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 414 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
.. .+. .++|+|||+.++.... -+.+.++++.
T Consensus 882 ~~----~v~-------~v~~spdg~~l~s~s~----dg~v~vw~~~ 912 (1249)
T 3sfz_A 882 LS----WVH-------GVMFSPDGSSFLTASD----DQTIRVWETK 912 (1249)
T ss_dssp SS----CEE-------EEEECTTSSEEEEEET----TSCEEEEEHH
T ss_pred cc----ceE-------EEEECCCCCEEEEEeC----CCeEEEEEcc
Confidence 11 122 2589999998775532 2346666654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-12 Score=133.67 Aligned_cols=229 Identities=12% Similarity=0.012 Sum_probs=136.0
Q ss_pred cceeEEeecCCCCCCCC-------cccccCCCCcccccceeecCC----C---CeEEEEEeecccccccCCceeEEEEEc
Q 004475 4 FTGIGIHRLLPDDSLGP-------EKEVHGYPDGAKINFVSWSPD----G---KRIAFSVRVDEEDNVSSCKLRVWIADA 69 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~-------~~~l~~~~~~~~~~~p~~SPD----G---~~iaf~~~~~~~~~~~~~~~~l~i~~~ 69 (751)
...|++|++.+ ++ ...+. .....+...+|+|| | +.|+... ....|+++++
T Consensus 35 dg~i~iw~~~~----~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~----------~dg~i~iw~~ 98 (397)
T 1sq9_A 35 DGYLKVWDNKL----LDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTS----------FSGDLLFYRI 98 (397)
T ss_dssp TSEEEEEESBC----CTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEE----------TTSCEEEEEE
T ss_pred CCEEEEEECCC----cccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEc----------CCCCEEEEEc
Confidence 45799999988 66 33333 22335889999999 9 8888863 2356777777
Q ss_pred CCCC------eeeccCCCCccccceeeeeEEe----cCCcE-EEEeecCCCCCCCCCCCCCCCCceeeccccccccchhh
Q 004475 70 ETGE------AKPLFESPDICLNAVFGSFVWV----NNSTL-LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (751)
Q Consensus 70 ~~g~------~~~lt~~~~~~~~~~~~~~~ws----pDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (751)
.+++ .+.+...........+..++|+ |+|+. |+..+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------------------------------- 147 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------------------------------- 147 (397)
T ss_dssp EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------------------------
T ss_pred cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------------------------
Confidence 7776 4444333210001247889999 99999 7776432
Q ss_pred hhccCCccchhhhhhheeeEEEEEcC-C------C-Cce-----ec-------CCC-ceEEeeeeCCCCceEEEEEecCC
Q 004475 139 DNLLKDEYDESLFDYYTTAQLVLGSL-D------G-TAK-----DF-------GTP-AVYTAVEPSPDQKYVLITSMHRP 197 (751)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~------G-~~~-----~l-------t~~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (751)
..|.++++ + + ... .+ ..+ ..+..++|+||| .|+....
T Consensus 148 ------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--- 205 (397)
T 1sq9_A 148 ------------------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN--- 205 (397)
T ss_dssp ------------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---
T ss_pred ------------------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---
Confidence 34555555 4 3 222 33 122 567789999999 6665432
Q ss_pred cccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccc
Q 004475 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~ 277 (751)
...+.+||+.+++........... ......+..+.|+|||+. |+... .+ ...+.
T Consensus 206 ----------dg~i~i~d~~~~~~~~~~~~~~~h------~~~~~~i~~i~~~~~~~~-l~~~~-~d--------~~~g~ 259 (397)
T 1sq9_A 206 ----------NGTVQISELSTLRPLYNFESQHSM------INNSNSIRSVKFSPQGSL-LAIAH-DS--------NSFGC 259 (397)
T ss_dssp ----------TSEEEEEETTTTEEEEEEECCC---------CCCCCEEEEEECSSTTE-EEEEE-EE--------TTEEE
T ss_pred ----------CCcEEEEECCCCceeEEEeccccc------cccCCccceEEECCCCCE-EEEEe-cC--------CCCce
Confidence 346889999866543322210000 000234668999999997 55443 10 01157
Q ss_pred eeeccCCCCCCCCceEeEe-------------eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 278 IYTQPAEPAEGEKPEILHK-------------LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 278 l~~~~~~~~~~~~~~~l~~-------------~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+++++.. +.....+.. ....+. +.|+|||+.|+.... ...|.++++.++
T Consensus 260 i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 323 (397)
T 1sq9_A 260 ITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----DGKLRFWDVKTK 323 (397)
T ss_dssp EEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTT
T ss_pred EEEEECCC--CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----CCeEEEEEcCCC
Confidence 88888751 222333333 455667 999999998887652 346777787764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-11 Score=127.29 Aligned_cols=311 Identities=12% Similarity=0.097 Sum_probs=173.4
Q ss_pred eEEeecCCCCCCCCcccccCCCCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC---
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--- 82 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~--- 82 (751)
+.++++.. ++.+.+.. .....+...+||| ||++||... ..+.|.++++.+++.........
T Consensus 25 ~~v~~~~~----~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~ 89 (408)
T 4a11_B 25 RRVLGLEL----NKDRDVER-IHGGGINTLDIEPVEGRYMLSGG----------SDGVIVLYDLENSSRQSYYTCKAVCS 89 (408)
T ss_dssp HHHHTEEE----CTTEEECC-CCSSCEEEEEECTTTCCEEEEEE----------TTSCEEEEECCCCSSSSCEEECEEEE
T ss_pred ceeecccc----Ccceeeee-ccCCcEEEEEEecCCCCEEEEEc----------CCCeEEEEECCCCcccceEecccccc
Confidence 44555555 55555542 2334688999999 999998863 33678888888776444322000
Q ss_pred ------ccccceeeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe
Q 004475 83 ------ICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT 155 (751)
Q Consensus 83 ------~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (751)
......+..++|+| +++.|+..+.+
T Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------------------------------------ 121 (408)
T 4a11_B 90 IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------------------------------------------------ 121 (408)
T ss_dssp ECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------------------------------------------------
T ss_pred ccccccccCCCcEEEEEEccCCCcEEEEEeCC------------------------------------------------
Confidence 00112477899999 66677766332
Q ss_pred eeEEEEEcC-CCCce-ecCCCceEEeeeeCCCC---ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 156 TAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQ---KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 156 ~~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG---~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
..|.++++ +++.. .+.....+..+.|+|++ +.|+....+ ..+.+||+.+++.....
T Consensus 122 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~~~~~----- 182 (408)
T 4a11_B 122 -KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSCSHIL----- 182 (408)
T ss_dssp -SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCCCEEE-----
T ss_pred -CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcceeeee-----
Confidence 47888888 55433 33323566677777754 466665433 36889999866433221
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe---------------E
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL---------------H 295 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l---------------~ 295 (751)
......+..++|+|+++++++... ..+.|.++++... ......+ .
T Consensus 183 -------~~~~~~v~~~~~~~~~~~ll~~~~------------~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 183 -------QGHRQEILAVSWSPRYDYILATAS------------ADSRVKLWDVRRA-SGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp -------CCCCSCEEEEEECSSCTTEEEEEE------------TTSCEEEEETTCS-SCCSEECCTTTTCSCCCTTTSSC
T ss_pred -------cCCCCcEEEEEECCCCCcEEEEEc------------CCCcEEEEECCCC-Ccccccccccccccceeeccccc
Confidence 112234668999999998333332 2245666666311 1111111 2
Q ss_pred eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee-CCCCCEEEEeeeec
Q 004475 296 KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKIKKE 373 (751)
Q Consensus 296 ~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-spDG~~l~~~~~~~ 373 (751)
.....+. +.|+|||+.|+.... ...|.+.++.++. ............ .. ......+ ...+..+++...+
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~- 313 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGT----DNRMRLWNSSNGE-NTLVNYGKVCNN-SK--KGLKFTVSCGCSSEFVFVPYG- 313 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC-BCCCCCCCCCCC-CS--SCCCCEECCSSSSCEEEEEET-
T ss_pred cccCceeEEEEcCCCCEEEEecC----CCeEEEEECCCCc-cceecccccccc-cc--ccceeEEecCCCceEEEEecC-
Confidence 3445566 999999999887652 2356677776641 111111110000 00 0000112 2233445554422
Q ss_pred CCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeE
Q 004475 374 NDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQY 453 (751)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l 453 (751)
..|.+||+.+++....+..... .+. .++|+||++.|+... . -+.|
T Consensus 314 --------------------~~i~v~d~~~~~~~~~~~~~~~----~v~-------~~~~s~~~~~l~s~~-~---dg~i 358 (408)
T 4a11_B 314 --------------------STIAVYTVYSGEQITMLKGHYK----TVD-------CCVFQSNFQELYSGS-R---DCNI 358 (408)
T ss_dssp --------------------TEEEEEETTTCCEEEEECCCSS----CEE-------EEEEETTTTEEEEEE-T---TSCE
T ss_pred --------------------CEEEEEECcCCcceeeeccCCC----eEE-------EEEEcCCCCEEEEEC-C---CCeE
Confidence 2789999998877555442211 122 258999998777543 2 2458
Q ss_pred EEEEcCCCce
Q 004475 454 HILSWPLKKS 463 (751)
Q Consensus 454 ~~~~~~~g~~ 463 (751)
.++++.+++.
T Consensus 359 ~iw~~~~~~~ 368 (408)
T 4a11_B 359 LAWVPSLYEP 368 (408)
T ss_dssp EEEEECC---
T ss_pred EEEeCCCCCc
Confidence 8888877653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-11 Score=138.21 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=170.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC------eeeccCCCCccccceeeeeEEecCCcEEEEee
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~------~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 105 (751)
.+...+|+||+..++.+. .....|.++++..+. .+.++.+.. .+..++|||||++|+..+
T Consensus 384 ~V~~v~~~~~~~~~l~s~---------s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSA---------SRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEE---------ETTSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred eeEEEEecCCCCCEEEEE---------eCCCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEe
Confidence 578899999976555543 233566677765432 123332222 477899999999998775
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeee
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEP 182 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~ 182 (751)
.+ ..|.++|+ +| ..+.+..+ ..+..++|
T Consensus 450 ~D-------------------------------------------------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 WD-------------------------------------------------GELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp TT-------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CC-------------------------------------------------CcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 43 47888888 66 44555555 77899999
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
||||++|+..+.+ ..+.+||..+.....+.... ......+..+.|+|++...++++..
T Consensus 481 s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 481 SLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGG---------EGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSST---------TSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred eCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCC---------CCCCCcEEEEEEeCCCCcceEEEEe
Confidence 9999999876544 35889998765443332111 1122336689999998532333221
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
..+.|.++++.. ......+..+...+. +.|||||+.|+..+. ...|.+.++.++ +.+.
T Consensus 539 -----------~d~~v~vwd~~~--~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~----~~~~ 597 (694)
T 3dm0_A 539 -----------WDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEG----KKLY 597 (694)
T ss_dssp -----------TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTT----EEEE
T ss_pred -----------CCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC----ceEE
Confidence 235788888751 222334445566677 999999998887652 234556666664 2222
Q ss_pred eccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhh-
Q 004475 342 DRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE- 419 (751)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~- 419 (751)
.... ..+.. ++||||+..|+.... ..|.+||+.+++..............
T Consensus 598 ~~~~~~~v~~------~~~sp~~~~l~~~~~----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 598 SLEANSVIHA------LCFSPNRYWLCAATE----------------------HGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp CCBCSSCEEE------EEECSSSSEEEEEET----------------------TEEEEEETTTTEEEEEECCCCC-----
T ss_pred EecCCCcEEE------EEEcCCCcEEEEEcC----------------------CCEEEEECCCCCChhhhcccccccccc
Confidence 1111 11111 789999988766551 25888999888764433221100000
Q ss_pred ----ceeeeec---CCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 420 ----TAVALVF---GQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 420 ----~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
....... ....++|||||+.|+... . -+.|.++++.
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs-~---Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGY-T---DGVIRVWGIG 692 (694)
T ss_dssp -----------CCCCEEEEEECTTSSEEEEEE-T---TSEEEEEEC-
T ss_pred ccccccccCCceeEEeeeEEEcCCCCEEEEEc-C---CCeEEEEecc
Confidence 0000000 012368999999877543 2 2457777653
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-15 Score=149.86 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=120.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-------hhHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-------RFVEQLVSS 584 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-------~~~~~~~~d 584 (751)
.|+||++||.+. +...|. .+...|+ +||.|++ ++.+|+|.+.... ....+..+|
T Consensus 25 ~p~vv~lHG~~~-----------~~~~~~----~~~~~l~-~g~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 85 (304)
T 3b12_A 25 GPALLLLHGFPQ-----------NLHMWA----RVAPLLA-NEYTVVC---ADLRGYGGSSKPVGAPDHANYSFRAMASD 85 (304)
Confidence 478999999641 111221 2233444 8999999 6667887765431 123344566
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---------------------c
Q 004475 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---------------------F 643 (751)
Q Consensus 585 ~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~---------------------~ 643 (751)
+.++++.+ +.++++++||||||.+|+.+|.++|++++++|++++........ .
T Consensus 86 l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (304)
T 3b12_A 86 QRELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPY 159 (304)
Confidence 66666554 33579999999999999999999999999999998754311000 0
Q ss_pred ----------Ccccc-ccc-------ch--hhHHHH-----------------Hhc---Cc----ccccCCCCCCEEEEE
Q 004475 644 ----------GFQTE-FRT-------LW--EATNVY-----------------IEM---SP----ITHANKIKKPILIIH 679 (751)
Q Consensus 644 ----------~~~~~-~~~-------~~--~~~~~~-----------------~~~---~~----~~~~~~~~~P~li~~ 679 (751)
.+... ... .. ...+.+ ... .. ...+.++++|+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~ 239 (304)
T 3b12_A 160 PEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFS 239 (304)
Confidence 00000 000 00 000000 000 00 001567899999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 680 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 680 G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
|++|..++ +......+.+.+. .++++++ ++||... .+..+.+.+.+.+||.+...
T Consensus 240 G~~D~~~~-~~~~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 294 (304)
T 3b12_A 240 GSAGLMHS-LFEMQVVWAPRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDARS 294 (304)
Confidence 99996553 1344333333332 3567778 9999876 56677889999999988754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-12 Score=134.40 Aligned_cols=217 Identities=11% Similarity=0.084 Sum_probs=136.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+|+..+ .....+.. ....+....|+|||++|+... ....|.++++.+++...........
T Consensus 130 g~i~i~~~~~----~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 130 GELRLWNKTG----ALLNVLNF--HRAPIVSVKWNKDGTHIISMD----------VENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SCEEEEETTS----CEEEEECC--CCSCEEEEEECTTSSEEEEEE----------TTCCEEEEETTTTEEEEEECCC---
T ss_pred CeEEEEeCCC----CeeeeccC--CCccEEEEEECCCCCEEEEEe----------cCCeEEEEECCCCcEEEEeeccccC
Confidence 4688888544 44444442 233688999999999998863 3467888898887754433322210
Q ss_pred c-----------cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhh
Q 004475 85 L-----------NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (751)
Q Consensus 85 ~-----------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (751)
. ...+..+.|+|++. ++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------------------------------- 225 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP----------------------------------------------- 225 (425)
T ss_dssp ------------CCCBSCCEEEETTE-EEEECG-----------------------------------------------
T ss_pred ccceeeccccCCcceeeEEEEcCCCE-EEEEcC-----------------------------------------------
Confidence 0 00056789999986 443321
Q ss_pred heeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 154 YTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 154 ~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
...|+++++ +++ ...+..+ ..+..++|+|||++|+....+ ..+.+|++.+++......
T Consensus 226 --~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~---- 286 (425)
T 1r5m_A 226 --KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD-------------GTLRIWHGGNGNSQNCFY---- 286 (425)
T ss_dssp --GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT-------------SCEEEECSSSBSCSEEEC----
T ss_pred --CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCccceEec----
Confidence 146888888 553 3444444 778899999999988876533 358899988664432211
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg 309 (751)
.....+..+.|+||| . ++... ..+.|+++++.. +.....+......+. +.|+|||
T Consensus 287 --------~~~~~i~~~~~~~~~-~-l~~~~------------~d~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 287 --------GHSQSIVSASWVGDD-K-VISCS------------MDGSVRLWSLKQ--NTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp --------CCSSCEEEEEEETTT-E-EEEEE------------TTSEEEEEETTT--TEEEEEEECTTCCEEEEEECTTS
T ss_pred --------CCCccEEEEEECCCC-E-EEEEe------------CCCcEEEEECCC--CcEeEecccCCccEEEEEEcCCC
Confidence 112335689999999 4 55544 335888898851 222233333455667 9999999
Q ss_pred ceEEEeeeecccceeEEEecCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+.|+.... ...|.++++.+
T Consensus 343 ~~l~~~~~----dg~i~i~~~~~ 361 (425)
T 1r5m_A 343 QKYAVAFM----DGQVNVYDLKK 361 (425)
T ss_dssp SEEEEEET----TSCEEEEECHH
T ss_pred CEEEEEEC----CCeEEEEECCC
Confidence 98887662 23455566654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-11 Score=120.92 Aligned_cols=245 Identities=12% Similarity=0.069 Sum_probs=153.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|.+|++.+ ++...... .....+...+|||||++|+... ....|.++++.+++..........
T Consensus 45 g~i~iw~~~~----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~- 108 (312)
T 4ery_A 45 KLIKIWGAYD----GKFEKTIS-GHKLGISDVAWSSDSNLLVSAS----------DDKTLKIWDVSSGKCLKTLKGHSN- 108 (312)
T ss_dssp SCEEEEETTT----CCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTCCEEEEEECCSS-
T ss_pred CeEEEEeCCC----cccchhhc-cCCCceEEEEEcCCCCEEEEEC----------CCCEEEEEECCCCcEEEEEcCCCC-
Confidence 4688999977 76655431 2233578899999999998863 346788889988875443332221
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.+..+.|+|+++.|+..+.+ ..|.++|+
T Consensus 109 ---~v~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~iwd~ 136 (312)
T 4ery_A 109 ---YVFCCNFNPQSNLIVSGSFD-------------------------------------------------ESVRIWDV 136 (312)
T ss_dssp ---CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEET
T ss_pred ---CEEEEEEcCCCCEEEEEeCC-------------------------------------------------CcEEEEEC
Confidence 36788999999998877442 46777888
Q ss_pred -CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCc
Q 004475 165 -DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 165 -~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~ 240 (751)
+++ ...+..+ ..+..+.|+|||+.|+....+ ..+.+||+.+++.. .+... .
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~------------~ 191 (312)
T 4ery_A 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-------------GLCRIWDTASGQCLKTLIDD------------D 191 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCS------------S
T ss_pred CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceeeEEecc------------C
Confidence 564 4455545 678899999999988776543 35889999865432 22111 1
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC-ceEeEeecee--EE-EEEe-cCCceEEEe
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLR--FS-VSWC-DDSLALVNE 315 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~--~~-~~~s-pdg~~l~~~ 315 (751)
...+..++|+|||+. ++... ..+.|.++++. .+. ...+...... .. ..++ +++++|+..
T Consensus 192 ~~~~~~~~~~~~~~~-l~~~~------------~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 192 NPPVSFVKFSPNGKY-ILAAT------------LDNTLKLWDYS---KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp CCCEEEEEECTTSSE-EEEEE------------TTTEEEEEETT---TTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred CCceEEEEECCCCCE-EEEEc------------CCCeEEEEECC---CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 122457899999998 55543 23578888875 222 1222211111 11 4455 566666654
Q ss_pred eeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 316 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
. ....|.+.++.++ +...........+.. ++|+|++..|+..+
T Consensus 256 ~----~dg~i~vwd~~~~--~~~~~~~~h~~~v~~------~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 256 S----EDNLVYIWNLQTK--EIVQKLQGHTDVVIS------TACHPTENIIASAA 298 (312)
T ss_dssp C----TTSCEEEEETTTC--CEEEEECCCSSCEEE------EEECSSSSEEEEEE
T ss_pred C----CCCEEEEEECCCc--hhhhhhhccCCcEEE------EeecCcCCceEEEE
Confidence 4 2345777777764 223322222232333 78999999888776
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=129.01 Aligned_cols=215 Identities=7% Similarity=0.020 Sum_probs=132.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCC---CCeEEEEEeecccccccCCceeEEEEEcCCCC-e-eecc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-A-KPLF 78 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPD---G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~-~~lt 78 (751)
...|.+|++.+ ++...+........+...+|+|| |+.|+... ..+.|.++++.+++ . ..+.
T Consensus 43 d~~v~iw~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~ 108 (357)
T 3i2n_A 43 TGVIQLYEIQH----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD----------FGGNLHIWNLEAPEMPVYSVK 108 (357)
T ss_dssp CEEEEEEEECS----SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE----------TTSCEEEECTTSCSSCSEEEC
T ss_pred CcEEEEEeCCC----CcccceeeecccCcEEEEEEcCCCCCCceEEEec----------CCCeEEEEeCCCCCccEEEEE
Confidence 45799999988 87765543333346889999999 68888753 34678888888776 3 3332
Q ss_pred CCCCccccceeeee------EEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhh
Q 004475 79 ESPDICLNAVFGSF------VWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD 152 (751)
Q Consensus 79 ~~~~~~~~~~~~~~------~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (751)
.... .+..+ +|+|||+.|+..+.+
T Consensus 109 ~~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d--------------------------------------------- 138 (357)
T 3i2n_A 109 GHKE-----IINAIDGIGGLGIGEGAPEIVTGSRD--------------------------------------------- 138 (357)
T ss_dssp CCSS-----CEEEEEEESGGGCC-CCCEEEEEETT---------------------------------------------
T ss_pred eccc-----ceEEEeeccccccCCCccEEEEEeCC---------------------------------------------
Confidence 2222 24444 568999998877442
Q ss_pred hheeeEEEEEcC-CCC--ceecCCC-----ceEEeee----eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce
Q 004475 153 YYTTAQLVLGSL-DGT--AKDFGTP-----AVYTAVE----PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (751)
Q Consensus 153 ~~~~~~l~~~~~-~G~--~~~lt~~-----~~~~~~~----~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (751)
..|.++++ +++ ...+... ..+..+. |+|||+.|+....+ ..+.+||+.+++
T Consensus 139 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~ 201 (357)
T 3i2n_A 139 ----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMA 201 (357)
T ss_dssp ----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTE
T ss_pred ----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCc
Confidence 35777777 442 3333322 2455555 89999998876543 368999999876
Q ss_pred eeeeccCCCCCCCCCccCCccCCCceeeeec---CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE--
Q 004475 221 VRELCDLPPAEDIPVCYNSVREGMRSISWRA---DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-- 295 (751)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp---dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-- 295 (751)
........ ..+..+.|+| +++. ++... ..+.|+++++.. +.....+.
T Consensus 202 ~~~~~~~~-------------~~v~~~~~~~~~~~~~~-l~~~~------------~dg~i~i~d~~~--~~~~~~~~~~ 253 (357)
T 3i2n_A 202 LRWETNIK-------------NGVCSLEFDRKDISMNK-LVATS------------LEGKFHVFDMRT--QHPTKGFASV 253 (357)
T ss_dssp EEEEEECS-------------SCEEEEEESCSSSSCCE-EEEEE------------STTEEEEEEEEE--EETTTEEEEE
T ss_pred eeeecCCC-------------CceEEEEcCCCCCCCCE-EEEEC------------CCCeEEEEeCcC--CCcccceeee
Confidence 65432222 2356889999 8887 55543 235778887741 11222222
Q ss_pred ---eeceeEE-EEEecCCce-EEEeeeecccceeEEEec
Q 004475 296 ---KLDLRFS-VSWCDDSLA-LVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 296 ---~~~~~~~-~~~spdg~~-l~~~~~~~~~~~~l~~~~ 329 (751)
.....+. +.|+|+++. |+... ..+.-.+|.+.
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 290 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYE 290 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEE
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecC
Confidence 4455667 999999994 54443 12333455444
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=118.21 Aligned_cols=272 Identities=12% Similarity=0.060 Sum_probs=164.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+| |||++|+... ..+.|.++++.+++.......... .+..++|+|||+.|+....+
T Consensus 20 ~v~~~~~-~~~~~l~s~~----------~dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d---- 80 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVS----------RDGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGKD---- 80 (313)
T ss_dssp CEEEEEE-EETTEEEEEE----------TTSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEETT----
T ss_pred CcEEEEe-cCCCEEEEEE----------cCCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecCC----
Confidence 5788899 9999988753 346788888877765444332221 47789999999999887543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC----CceecCCC-ceEEeeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G----~~~~lt~~-~~~~~~~~SpD 185 (751)
..+.++++ +. ....+..+ ..+..+.| +
T Consensus 81 ---------------------------------------------g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 81 ---------------------------------------------TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp ---------------------------------------------SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred ---------------------------------------------CeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 24455555 22 23344434 66777888 6
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec-CCCceEEEEEecc
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQD 264 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~~~~ 264 (751)
++.|+....+ ..+.+|| .......+..+ ...+..+.|+| +++. ++...
T Consensus 114 ~~~l~~~~~d-------------~~i~~~d-~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~-l~~~~--- 162 (313)
T 3odt_A 114 DGVVISGSWD-------------KTAKVWK-EGSLVYNLQAH-------------NASVWDAKVVSFSENK-FLTAS--- 162 (313)
T ss_dssp TTEEEEEETT-------------SEEEEEE-TTEEEEEEECC-------------SSCEEEEEEEETTTTE-EEEEE---
T ss_pred CCEEEEEeCC-------------CCEEEEc-CCcEEEecccC-------------CCceeEEEEccCCCCE-EEEEE---
Confidence 7777765433 3588888 33333333222 12345788888 7776 55543
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
..+.|.+++.. .....+.. ....+. +.|+|+++ |+... ....|.+.++.++ +......
T Consensus 163 ---------~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 163 ---------ADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp ---------TTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTTC--CEEEEEE
T ss_pred ---------CCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCch--hhhhhhh
Confidence 23567777752 23333333 455566 99999999 55443 2346777788764 2233222
Q ss_pred cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhcee
Q 004475 343 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 422 (751)
Q Consensus 343 ~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 422 (751)
.....+.. ++|+|||+ |+..+. ...|++||+.+++.......... .+.
T Consensus 223 ~~~~~i~~------~~~~~~~~-l~~~~~---------------------dg~v~iwd~~~~~~~~~~~~~~~----~i~ 270 (313)
T 3odt_A 223 GHESFVYC------IKLLPNGD-IVSCGE---------------------DRTVRIWSKENGSLKQVITLPAI----SIW 270 (313)
T ss_dssp CCSSCEEE------EEECTTSC-EEEEET---------------------TSEEEEECTTTCCEEEEEECSSS----CEE
T ss_pred cCCceEEE------EEEecCCC-EEEEec---------------------CCEEEEEECCCCceeEEEeccCc----eEE
Confidence 22222222 78999994 665552 23799999998877655443221 122
Q ss_pred eeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 423 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 423 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
.++|+||++ ++. ... -+.++++++.+++..
T Consensus 271 -------~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 271 -------SVDCMSNGD-IIV-GSS---DNLVRIFSQEKSRWA 300 (313)
T ss_dssp -------EEEECTTSC-EEE-EET---TSCEEEEESCGGGCC
T ss_pred -------EEEEccCCC-EEE-EeC---CCcEEEEeCCCCcee
Confidence 258999998 332 222 346888998776543
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=132.71 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCcee-EEEEccCCCCCCCCc-cCc--ccc---cccchhhHHHHHhcCccccc
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSYNKTLTP-FGF--QTE---FRTLWEATNVYIEMSPITHA 668 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~-~~v~~~~~~d~~~~~-~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 668 (751)
..+|++||+|+|+|+||+||+.+++.+|+.|+ +++++++........ ... ... ....+.........+++..+
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHHHHHhhccCCCCCCHHHHHHHhhcccCChh
Confidence 45899999999999999999999999999998 877776532111000 000 000 00001111111111344444
Q ss_pred CCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC--cEEEEEeCCCCCcCCcccc------------------HHH
Q 004475 669 NKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGA--LSRLVLLPFEHHVYAAREN------------------VMH 727 (751)
Q Consensus 669 ~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~H~~~~~~~------------------~~~ 727 (751)
.+++ +|+|++||+.|.+|| +.++++++++|++.+. +++++++++++|.+..... -.+
T Consensus 86 ~~l~~~Pvli~HG~~D~vVP--~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d 163 (318)
T 2d81_A 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred HcCCCCcEEEEeCCCCCCcC--HHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCCh
Confidence 4443 699999999999999 9999999999998873 7999999999998753322 134
Q ss_pred HHHHHHHHHHHHhc
Q 004475 728 VIWETDRWLQKYCL 741 (751)
Q Consensus 728 ~~~~~~~fl~~~l~ 741 (751)
...+|++||...+.
T Consensus 164 ~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 164 GAGAALKWIYGSLN 177 (318)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhccCC
Confidence 56789999987664
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=128.13 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=135.4
Q ss_pred cceeEEeecCCCCCCCC---cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 4 FTGIGIHRLLPDDSLGP---EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~---~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
...|++|++.+ ++ ...+.. ....+...+|+|||+.|+... ....|.++++.+++..+....
T Consensus 29 d~~v~i~~~~~----~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~ 92 (372)
T 1k8k_C 29 NHEVHIYEKSG----NKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCG----------TDRNAYVWTLKGRTWKPTLVI 92 (372)
T ss_dssp SSEEEEEEEET----TEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEE----------TTSCEEEEEEETTEEEEEEEC
T ss_pred CCEEEEEeCCC----CcEEeeeeecC--CCCcccEEEEeCCCCEEEEEc----------CCCeEEEEECCCCeeeeeEEe
Confidence 45799999988 74 333432 233688999999999998864 235677777777763332211
Q ss_pred CCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 81 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
... ...+..++|+|||+.|+....+ ..|.
T Consensus 93 ~~~--~~~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~v~ 121 (372)
T 1k8k_C 93 LRI--NRAARCVRWAPNEKKFAVGSGS-------------------------------------------------RVIS 121 (372)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SSEE
T ss_pred ecC--CCceeEEEECCCCCEEEEEeCC-------------------------------------------------CEEE
Confidence 111 1146789999999999887532 2455
Q ss_pred EEcC-CCC----ceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeec-----cCC
Q 004475 161 LGSL-DGT----AKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-----DLP 228 (751)
Q Consensus 161 ~~~~-~G~----~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~~ 228 (751)
++++ .++ ...+ ..+ ..+..++|+|||++|+....+ ..+.+||+.......-. ...
T Consensus 122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~ 188 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSK 188 (372)
T ss_dssp EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------------CCEEEEEcccccccccccccccccc
Confidence 5555 332 2333 222 678899999999998876543 35788986422110000 000
Q ss_pred CCCCC-CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEe
Q 004475 229 PAEDI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC 306 (751)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s 306 (751)
..... ...+......+..+.|+|||+. |+... ..+.|.++++.. +.....+......+. +.|+
T Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~------------~d~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 189 MPFGELMFESSSSCGWVHGVCFSANGSR-VAWVS------------HDSTVCLADADK--KMAVATLASETLPLLAVTFI 253 (372)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEE------------TTTEEEEEEGGG--TTEEEEEECSSCCEEEEEEE
T ss_pred cchhhheEecCCCCCeEEEEEECCCCCE-EEEEe------------CCCEEEEEECCC--CceeEEEccCCCCeEEEEEe
Confidence 00000 0111122334668999999987 55543 235788888751 223344444455667 9999
Q ss_pred cCCceEEEeeeecccceeEEEecC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
|||+.|+.+. .+.-.+|.++.
T Consensus 254 ~~~~~l~~~~---d~~i~i~~~~~ 274 (372)
T 1k8k_C 254 TESSLVAAGH---DCFPVLFTYDS 274 (372)
T ss_dssp ETTEEEEEET---TSSCEEEEEET
T ss_pred cCCCEEEEEe---CCeEEEEEccC
Confidence 9999776552 33345665544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-11 Score=119.54 Aligned_cols=254 Identities=12% Similarity=0.081 Sum_probs=155.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..|++||+.+ |+..++-.+.. ...+...+|||||++||..+ ....|.++++++++..+...+..
T Consensus 45 ~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs----------~Dg~v~iw~~~~~~~~~~~~~h~- 109 (318)
T 4ggc_A 45 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGT----------SSAEVQLWDVQQQKRLRNMTSHS- 109 (318)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTTEEEEEEECCS-
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEE----------CCCcEEEeecCCceeEEEecCcc-
Confidence 4689999998 98776543322 33578999999999998753 34678888998887544433222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....++++++.|+..+.. ..+..++
T Consensus 110 -----~~~~~~~~~~~~l~s~~~~-------------------------------------------------~~~~~~~ 135 (318)
T 4ggc_A 110 -----ARVGSLSWNSYILSSGSRS-------------------------------------------------GHIHHHD 135 (318)
T ss_dssp -----SCEEEEEEETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred -----ceEEEeecCCCEEEEEecC-------------------------------------------------CceEeee
Confidence 2334677888877766432 2334444
Q ss_pred C-CC--CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 164 L-DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~-~G--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
. .+ ....+..+ ..+....|+++|++|+....+ ..+.+||+.+++....... ....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~--------~~~~ 194 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQ--------TFTQ 194 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCSE--------EECC
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCccccccee--------eecc
Confidence 4 22 22333333 667788999999998866443 3588999976542211000 0011
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|+|++..++...... ..+.|.+++.. .............+. ..|+|+++.++..+..
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~i~lwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGT----------SDRHIRIWNVC---SGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECT----------TTCEEEEEETT---TCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred cCCceEEEEecCCCCcEEEEEecC----------CCCEEEEEecc---cccccccccceeeeeeeeecccccceEEEEEc
Confidence 112345789999999844443311 22467777764 333333344455556 8999999998876632
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
....|.+.+..++ +...........+.. ++|||||+.|+..+.
T Consensus 262 --~d~~i~iwd~~~~--~~~~~l~gH~~~V~~------l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 262 --AQNQLVIWKYPTM--AKVAELKGHTSRVLS------LTMSPDGATVASAAA 304 (318)
T ss_dssp --TTCCEEEEETTTC--CEEEEECCCSSCEEE------EEECTTSSCEEEEET
T ss_pred --CCCEEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEec
Confidence 2346777787774 223222222333333 889999999988773
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-11 Score=136.29 Aligned_cols=220 Identities=13% Similarity=0.078 Sum_probs=134.7
Q ss_pred cceeEEeecCCCCCC-CC-cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 4 FTGIGIHRLLPDDSL-GP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~-g~-~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
...|.+|++..+... +. .+.+++ +...+...+|||||++|+..+ ....|.++++.+++..+...+.
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~~g~~l~sgs----------~Dg~v~vwd~~~~~~~~~~~~h 471 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTG--HSHFVEDVVLSSDGQFALSGS----------WDGELRLWDLAAGVSTRRFVGH 471 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEEC--CSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEEccCCCcccccccceecC--CCCcEEEEEECCCCCEEEEEe----------CCCcEEEEECCCCcceeEEeCC
Confidence 457899999761111 11 123332 223578899999999998753 3468888899887654433222
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. .+..++|||||+.|+..+.+ ..|.+
T Consensus 472 ~~----~v~~~~~s~~~~~l~s~s~D-------------------------------------------------~~i~i 498 (694)
T 3dm0_A 472 TK----DVLSVAFSLDNRQIVSASRD-------------------------------------------------RTIKL 498 (694)
T ss_dssp SS----CEEEEEECTTSSCEEEEETT-------------------------------------------------SCEEE
T ss_pred CC----CEEEEEEeCCCCEEEEEeCC-------------------------------------------------CEEEE
Confidence 21 37789999999999877543 35666
Q ss_pred EcCCCC-ceecC----CC-ceEEeeeeCCCCce-EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 162 GSLDGT-AKDFG----TP-AVYTAVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 162 ~~~~G~-~~~lt----~~-~~~~~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
+++.+. ...+. .+ ..+..++|+|++.. ++++... ...|.+||+.+.+.....
T Consensus 499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------d~~v~vwd~~~~~~~~~~--------- 557 (694)
T 3dm0_A 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW------------DKTVKVWNLSNCKLRSTL--------- 557 (694)
T ss_dssp ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET------------TSCEEEEETTTCCEEEEE---------
T ss_pred EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC------------CCeEEEEECCCCcEEEEE---------
Confidence 676442 22221 12 55789999999842 3333322 346889999876543221
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALV 313 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~ 313 (751)
......+..++|||||+. |+..+ ..+.|.++++. .+...........+. +.||||+..|+
T Consensus 558 ---~~h~~~v~~v~~spdg~~-l~sg~------------~Dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 558 ---AGHTGYVSTVAVSPDGSL-CASGG------------KDGVVLLWDLA---EGKKLYSLEANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp ---CCCSSCEEEEEECTTSSE-EEEEE------------TTSBCEEEETT---TTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred ---cCCCCCEEEEEEeCCCCE-EEEEe------------CCCeEEEEECC---CCceEEEecCCCcEEEEEEcCCCcEEE
Confidence 112233668999999997 55543 23578888875 222211122334466 89999999877
Q ss_pred EeeeecccceeEEEecCCCC
Q 004475 314 NETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~ 333 (751)
.... ..|.+.++.++
T Consensus 619 ~~~~-----~~i~iwd~~~~ 633 (694)
T 3dm0_A 619 AATE-----HGIKIWDLESK 633 (694)
T ss_dssp EEET-----TEEEEEETTTT
T ss_pred EEcC-----CCEEEEECCCC
Confidence 6542 23666676664
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-11 Score=122.87 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=121.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.++..+.....- ..|.||++||.+. +...|. .... .+..+|.|++ .+.+|+
T Consensus 12 ~~~~~~~~~~~g----------~g~~~vllHG~~~-----------~~~~w~----~~~~-~l~~~~~vi~---~Dl~G~ 62 (291)
T 3qyj_A 12 TTEARINLVKAG----------HGAPLLLLHGYPQ-----------THVMWH----KIAP-LLANNFTVVA---TDLRGY 62 (291)
T ss_dssp CSSCEEEEEEEC----------CSSEEEEECCTTC-----------CGGGGT----TTHH-HHTTTSEEEE---ECCTTS
T ss_pred cCCeEEEEEEcC----------CCCeEEEECCCCC-----------CHHHHH----HHHH-HHhCCCEEEE---EcCCCC
Confidence 466667655431 1367999999641 112221 1222 3467999999 666788
Q ss_pred CCCCCCc-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC----
Q 004475 569 GDKLPND-------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN---- 637 (751)
Q Consensus 569 g~~~~~~-------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d---- 637 (751)
|.+.... .......+|+.+.++.+ ...++.++||||||.+|+.+|.++|++++++|++++...
T Consensus 63 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~ 136 (291)
T 3qyj_A 63 GDSSRPASVPHHINYSKRVMAQDQVEVMSKL------GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMY 136 (291)
T ss_dssp TTSCCCCCCGGGGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHH
T ss_pred CCCCCCCCCccccccCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhh
Confidence 7765432 12445556555555443 235799999999999999999999999999998864310
Q ss_pred -CC--------------CCccCccc----cc-------------c--cch------------hhH-------HHHHhcC-
Q 004475 638 -KT--------------LTPFGFQT----EF-------------R--TLW------------EAT-------NVYIEMS- 663 (751)
Q Consensus 638 -~~--------------~~~~~~~~----~~-------------~--~~~------------~~~-------~~~~~~~- 663 (751)
.. ..+..... .. . ... ..+ ..|....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T 3qyj_A 137 RTTDQEFATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAAT 216 (291)
T ss_dssp HTCCHHHHHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTT
T ss_pred hcchhhhhHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccc
Confidence 00 00000000 00 0 000 000 0011100
Q ss_pred ------cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 664 ------PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 664 ------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
....+.++++|+|+++|++|...+ ... ..+.+......++..+++ +||.+. .+..+++.+.+.+||.
T Consensus 217 ~~~~~~~~~~~~~i~~P~Lvi~G~~D~~~~--~~~---~~~~~~~~~~~~~~~~~~-~GH~~~-~E~P~~v~~~i~~fL~ 289 (291)
T 3qyj_A 217 IDLEHDELDMKQKISCPVLVLWGEKGIIGR--KYD---VLATWRERAIDVSGQSLP-CGHFLP-EEAPEETYQAIYNFLT 289 (291)
T ss_dssp HHHHHHHTTTTCCBCSCEEEEEETTSSHHH--HSC---HHHHHHTTBSSEEEEEES-SSSCHH-HHSHHHHHHHHHHHHH
T ss_pred cchhhcchhcCCccccceEEEecccccccc--hhh---HHHHHHhhcCCcceeecc-CCCCch-hhCHHHHHHHHHHHHh
Confidence 011246789999999999997532 111 122233333467778886 799765 7778899999999986
Q ss_pred H
Q 004475 738 K 738 (751)
Q Consensus 738 ~ 738 (751)
.
T Consensus 290 ~ 290 (291)
T 3qyj_A 290 H 290 (291)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=125.10 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=118.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~ 587 (751)
.|+||++||.+.. ...| ..+...|++ .+|.|++ ++.+|+|.+... .......++|+.+
T Consensus 38 ~p~lvllHG~~~~-----------~~~w----~~~~~~L~~~~~~~via---~Dl~GhG~S~~~~~~~~~~~~~a~dl~~ 99 (316)
T 3c5v_A 38 GPVLLLLHGGGHS-----------ALSW----AVFTAAIISRVQCRIVA---LDLRSHGETKVKNPEDLSAETMAKDVGN 99 (316)
T ss_dssp SCEEEEECCTTCC-----------GGGG----HHHHHHHHTTBCCEEEE---ECCTTSTTCBCSCTTCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCcc-----------cccH----HHHHHHHhhcCCeEEEE---ecCCCCCCCCCCCccccCHHHHHHHHHH
Confidence 4789999996411 1111 123344554 2899999 677788877432 2346778889989
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCCCCCC------------CccCcccc-----
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYNKTL------------TPFGFQTE----- 648 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~d~~~------------~~~~~~~~----- 648 (751)
+++.+... + +.++.|+||||||.+|+.+|.+ +|+ ++++|++++...... .+..+...
T Consensus 100 ~l~~l~~~--~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (316)
T 3c5v_A 100 VVEAMYGD--L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIE 175 (316)
T ss_dssp HHHHHHTT--C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHH
T ss_pred HHHHHhcc--C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHH
Confidence 98888431 1 2589999999999999999985 566 899988765310000 00000000
Q ss_pred ------cccchh-----hHHHHHh-------------------cC--------------cccccCCCCCCEEEEEcCCCC
Q 004475 649 ------FRTLWE-----ATNVYIE-------------------MS--------------PITHANKIKKPILIIHGEVDD 684 (751)
Q Consensus 649 ------~~~~~~-----~~~~~~~-------------------~~--------------~~~~~~~~~~P~li~~G~~D~ 684 (751)
...... .+..... .. ....+.++++|+|+++|+.|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~ 255 (316)
T 3c5v_A 176 WSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDR 255 (316)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCC
T ss_pred HhhhcccccchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccc
Confidence 000000 0000000 00 001122578999999999998
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 685 ~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
+.+ ... ...+. ..+++++++++||... .+..+.+...+.+||.+..
T Consensus 256 ~~~--~~~----~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 301 (316)
T 3c5v_A 256 LDK--DLT----IGQMQ---GKFQMQVLPQCGHAVH-EDAPDKVAEAVATFLIRHR 301 (316)
T ss_dssp CCH--HHH----HHHHT---TCSEEEECCCCSSCHH-HHSHHHHHHHHHHHHHHTT
T ss_pred ccc--HHH----HHhhC---CceeEEEcCCCCCccc-ccCHHHHHHHHHHHHHhcc
Confidence 653 221 11221 2468999999999876 5667889999999997653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-11 Score=120.25 Aligned_cols=242 Identities=12% Similarity=0.081 Sum_probs=148.2
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+||+.+ ++....... ....+...+|+|||++|+..+ ....|.++++.+++..........
T Consensus 34 dg~v~lWd~~~----~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s----------~d~~i~vwd~~~~~~~~~~~~h~~ 98 (304)
T 2ynn_A 34 SGRVELWNYET----QVEVRSIQV-TETPVRAGKFIARKNWIIVGS----------DDFRIRVFNYNTGEKVVDFEAHPD 98 (304)
T ss_dssp TSEEEEEETTT----TEEEEEEEC-CSSCEEEEEEEGGGTEEEEEE----------TTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCcEEEEECCC----CceeEEeec-cCCcEEEEEEeCCCCEEEEEC----------CCCEEEEEECCCCcEEEEEeCCCC
Confidence 45789999988 665432211 223578899999999998853 346788889988875443322221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..++|+|+++.|+..+.+ ..|.++|
T Consensus 99 ----~v~~~~~~~~~~~l~sgs~D-------------------------------------------------~~v~lWd 125 (304)
T 2ynn_A 99 ----YIRSIAVHPTKPYVLSGSDD-------------------------------------------------LTVKLWN 125 (304)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEE
T ss_pred ----cEEEEEEcCCCCEEEEECCC-------------------------------------------------CeEEEEE
Confidence 37789999999998877543 3566777
Q ss_pred C-CC-Cc-eecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCcc
Q 004475 164 L-DG-TA-KDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCY 237 (751)
Q Consensus 164 ~-~G-~~-~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~ 237 (751)
+ ++ .. +.+..+ ..+..++|+| |++.|+..+.+ ..+.+||+...... .+...
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-------------~~v~iwd~~~~~~~~~~~~~---------- 182 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTG---------- 182 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT-------------SEEEEEETTCSSCSEEEECC----------
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC-------------CeEEEEECCCCCccceeccC----------
Confidence 7 44 33 234444 6788999999 56767655433 36889998754322 11111
Q ss_pred CCccCCCceeeeec--CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 238 NSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 238 ~~~~~~~~~~~~sp--dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
....+..+.|+| |++. |+..+ ..+.|.++++.. +.....+......+. +.|+|+++.|+.
T Consensus 183 --~~~~v~~~~~~~~~~~~~-l~s~s------------~D~~i~iWd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 183 --QERGVNYVDYYPLPDKPY-MITAS------------DDLTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp --CTTCEEEEEECCSTTCCE-EEEEE------------TTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred --CcCcEEEEEEEEcCCCCE-EEEEc------------CCCeEEEEeCCC--CccceeeCCCCCCEEEEEECCCCCEEEE
Confidence 112234567766 6665 44433 235788888851 223344445556677 899999998876
Q ss_pred eeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCE
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTN 365 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~ 365 (751)
.+. ...|.+.+..+. +...........++. ++|+|+|..
T Consensus 246 ~s~----Dg~i~iWd~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~ 284 (304)
T 2ynn_A 246 GSE----DGTLKIWNSSTY--KVEKTLNVGLERSWC------IATHPTGRK 284 (304)
T ss_dssp EET----TSCEEEEETTTC--CEEEEECCSSSSEEE------EEECTTCGG
T ss_pred EcC----CCeEEEEECCCC--ceeeeccCCCccEEE------EEECCCCCc
Confidence 552 235666677664 222222222223333 778898863
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-11 Score=128.67 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=116.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC--CCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~--~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 109 (751)
.+...+|||||++|+++.. ....|.++++. +++..+..... .....+..++|+|||+.|+....+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~-- 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD---------SDKSLLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDTTVIIADKF-- 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG---------GGTEEEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETT--
T ss_pred ceEEEEEcCCCCEEEEEEC---------CCCeEEEEECcCCCCceeeeeecc--cCCCCceEEEEcCCCCEEEEEeCC--
Confidence 3778899999999866542 23556666666 66544432110 001136789999999999887432
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-----ecCCC-ceEEeeee
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-----DFGTP-AVYTAVEP 182 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-----~lt~~-~~~~~~~~ 182 (751)
..++++++ +++.. .+..+ ..+..++|
T Consensus 171 -----------------------------------------------g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 171 -----------------------------------------------GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL 203 (450)
T ss_dssp -----------------------------------------------SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE
T ss_pred -----------------------------------------------CcEEEEecCCcccccccceeeecccCceEEEEE
Confidence 47888888 55332 23333 67889999
Q ss_pred CCC---CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 183 SPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 183 SpD---G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
+|| |++|+....+ ..|++||+.++...... +......+..++|+ ||+. |+.
T Consensus 204 sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~-----------~~~h~~~v~~~~~s-d~~~-l~s 257 (450)
T 2vdu_B 204 IKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKW-----------LFGHKHFVSSICCG-KDYL-LLS 257 (450)
T ss_dssp EECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEE-----------CCCCSSCEEEEEEC-STTE-EEE
T ss_pred cCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeee-----------ecCCCCceEEEEEC-CCCE-EEE
Confidence 999 8888776433 36889998765432210 01112345688999 9987 555
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCC-ceEeE-------------------------eeceeEE-EEEecCCceE
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILH-------------------------KLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~-------------------------~~~~~~~-~~~spdg~~l 312 (751)
.+ ..+.|.++++. .+. ...+. .....+. +.|+||++.|
T Consensus 258 ~~------------~d~~v~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 258 AG------------GDDKIFAWDWK---TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EE------------SSSEEEEEETT---TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred Ee------------CCCeEEEEECC---CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 43 23578888875 222 22222 1123456 8999999998
Q ss_pred EEee
Q 004475 313 VNET 316 (751)
Q Consensus 313 ~~~~ 316 (751)
+.+.
T Consensus 323 ~~~~ 326 (450)
T 2vdu_B 323 AFFV 326 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-11 Score=123.78 Aligned_cols=286 Identities=10% Similarity=0.080 Sum_probs=162.2
Q ss_pred cccceeecCC---CCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCCccccceeeeeEEecC----CcEEEE
Q 004475 32 KINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN----STLLIF 103 (751)
Q Consensus 32 ~~~~p~~SPD---G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspD----g~~l~~ 103 (751)
.+...+|||+ |..++++.. ....|.++++.+++. +.+...........+..++|+|+ |+.|+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~---------~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATV---------GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEE---------ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEecccCCCCceEEEEC---------CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 5788999985 776666542 223788888876653 33321111111124778999999 667776
Q ss_pred eecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEee
Q 004475 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAV 180 (751)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~ 180 (751)
...+ ..|.++++ +++ ...+..+ ..+..+
T Consensus 91 ~~~d-------------------------------------------------g~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AGSR-------------------------------------------------GIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EETT-------------------------------------------------CEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ecCC-------------------------------------------------CEEEEEEchhceEeeeecCCCCcEEEE
Confidence 6432 47888888 564 3444434 778899
Q ss_pred eeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 181 EPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 181 ~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
+|+| |++.|+....+ ..|.+||+.+++....... +......+..+.|+|||+. ++.
T Consensus 122 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~-l~~ 178 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGG---------VEGHRDEVLSADYDLLGEK-IMS 178 (366)
T ss_dssp EECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECS---------TTSCSSCEEEEEECTTSSE-EEE
T ss_pred EECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEecc---------cccccCceeEEEECCCCCE-EEE
Confidence 9999 88888776443 3689999987654433210 0112234678999999997 555
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCCc-e----------------------------EeEeeceeEE-EEEecCC
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-E----------------------------ILHKLDLRFS-VSWCDDS 309 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~----------------------------~l~~~~~~~~-~~~spdg 309 (751)
.. ..+.|.++++. .... . ........+. +.|+ +
T Consensus 179 ~~------------~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 179 CG------------MDHSLKLWRIN---SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EE------------TTSCEEEEESC---SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred ec------------CCCCEEEEECC---CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 43 22466666664 1110 0 0001333445 7787 6
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCc----------ceeee--ecccccccCCCCCCCeeeCCC--CCEEEEeeeecCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVA----------PRVLF--DRVFENVYSDPGSPMMTRTST--GTNVIAKIKKEND 375 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~----------~~~l~--~~~~~~~~~~~~~~~~~~spD--G~~l~~~~~~~~~ 375 (751)
+.|+.... ...|.+.++.+.... ...+. ......+.. ++|+|| |+.|+....+
T Consensus 242 ~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~~~l~~~~~d--- 308 (366)
T 3k26_A 242 DLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY------MRFSMDFWQKMLALGNQV--- 308 (366)
T ss_dssp TEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC------CCCEECTTSSEEEEECTT---
T ss_pred CEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE------EEEcCCCCCcEEEEEecC---
Confidence 66665542 234555555443110 01111 111111222 779999 9988877622
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCceeE----EeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCC
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKER----IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 451 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 451 (751)
..|++||+.+++... .+..... ...+ ..++|+||++.|+... . -+
T Consensus 309 ------------------g~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v-------~~~~~s~~~~~l~s~~-~---dg 357 (366)
T 3k26_A 309 ------------------GKLYVWDLEVEDPHKAKCTTLTHHKC--GAAI-------RQTSFSRDSSILIAVC-D---DA 357 (366)
T ss_dssp ------------------SCEEEEECCSSSGGGCEEEEECCTTC--CSCE-------EEEEECTTSSEEEEEE-T---TS
T ss_pred ------------------CcEEEEECCCCCCccccceEEccccc--CCce-------EEEEeCCCCCeEEEEe-C---CC
Confidence 378899998875421 1111100 0011 2258999999877553 2 24
Q ss_pred eEEEEEcC
Q 004475 452 QYHILSWP 459 (751)
Q Consensus 452 ~l~~~~~~ 459 (751)
.|+++|+.
T Consensus 358 ~i~iwd~~ 365 (366)
T 3k26_A 358 SIWRWDRL 365 (366)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEec
Confidence 67777763
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=127.72 Aligned_cols=213 Identities=12% Similarity=0.003 Sum_probs=129.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC---------CeEEEE
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---------RFAVLA 559 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------G~~v~~ 559 (751)
.+|..|+...+.+.. +..|.||++||.+. + ...+. .....|++. ||.|++
T Consensus 75 i~g~~i~~~~~~~~~------~~~~plll~HG~~~-----------s---~~~~~-~~~~~L~~~~~~~~~~~~~~~vi~ 133 (388)
T 4i19_A 75 IDGATIHFLHVRSPE------PDATPMVITHGWPG-----------T---PVEFL-DIIGPLTDPRAHGGDPADAFHLVI 133 (388)
T ss_dssp ETTEEEEEEEECCSS------TTCEEEEEECCTTC-----------C---GGGGH-HHHHHHHCGGGGTSCGGGCEEEEE
T ss_pred ECCeEEEEEEccCCC------CCCCeEEEECCCCC-----------C---HHHHH-HHHHHHhCcccccCCCCCCeEEEE
Confidence 468888887776543 12578999999641 1 11111 334455554 999999
Q ss_pred cCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 560 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
++.+|+|.+.... ....+..+++.++++.+ ..++++++||||||.+|+.+|.++|++++++++.++..
T Consensus 134 ---~dl~G~G~S~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 134 ---PSLPGFGLSGPLKSAGWELGRIAMAWSKLMASL------GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp ---ECCTTSGGGCCCSSCCCCHHHHHHHHHHHHHHT------TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred ---EcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 5566777664432 23445555555554432 33589999999999999999999999999999998643
Q ss_pred CCCCCcc---Cccccc----------------------------------------------ccchhh------------
Q 004475 637 NKTLTPF---GFQTEF----------------------------------------------RTLWEA------------ 655 (751)
Q Consensus 637 d~~~~~~---~~~~~~----------------------------------------------~~~~~~------------ 655 (751)
.....+. .+.... ...|..
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~dsp~gl~a~i~ek~~~w~~~~~~~~~~~~~d 284 (388)
T 4i19_A 205 NLSGEPGELETLSDADKARLAVSERFLDDLSGPMKMQSTRPHTIGYMLNDSPVAQLAYLLEMFKHWAQTENVPEDAVDRD 284 (388)
T ss_dssp CBCCCGGGGGGCCHHHHHHHHTHHHHHHHTCHHHHHHTTCHHHHHHHHHTCHHHHHHHHHHHHHHTSCCSSSGGGTSCHH
T ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHcCChHHHHhcCCchhhhhHhhCCHHHHHHHHHHHHHHhcCCCCCcccCCCHH
Confidence 2111000 000000 000000
Q ss_pred ------------------HHHHHhcC---c----ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 656 ------------------TNVYIEMS---P----ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 656 ------------------~~~~~~~~---~----~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
...|.+.. . ...+.++++|+++++|.+|...+ +.. +.+.+. ..-+++.
T Consensus 285 ~ll~~~~~y~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~i~vP~~v~~g~~D~~~~--p~~---~~~~~~--~~~~~~~ 357 (388)
T 4i19_A 285 LMLTHISLFWFTATGGSAAQAHYELKPFLPITSLIGRSPTLDVPMGVAVYPGALFQP--VRS---LAERDF--KQIVHWA 357 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTGGGCTTTCCBCCCCCBCSCEEEEECTBCSSCC--CHH---HHHHHB--TTEEEEE
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHhhcccccccccccCCCCCCCEEEEeCCcccccc--cHH---HHHHhC--CCeEEEE
Confidence 00111111 0 01344578999999999996554 332 222221 1236788
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+++++||... .+..+.+.+.+.+||.+.
T Consensus 358 ~~~~gGHf~~-~E~Pe~~~~~l~~fl~~~ 385 (388)
T 4i19_A 358 ELDRGGHFSA-MEEPDLFVDDLRTFNRTL 385 (388)
T ss_dssp ECSSCBSSHH-HHCHHHHHHHHHHHHHHH
T ss_pred ECCCCcCccc-hhcHHHHHHHHHHHHHHH
Confidence 8999999876 677889999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-10 Score=117.60 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=131.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecC--CcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~ 109 (751)
.+...+|||||++||..+ ....|.+++++++..+.+.....+ ...+..++|+|+ |+.|+..+.+
T Consensus 11 ~V~~~~~s~~g~~las~s----------~D~~v~iw~~~~~~~~~~~~l~gH--~~~V~~v~~s~~~~g~~l~s~s~D-- 76 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCS----------SDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD-- 76 (297)
T ss_dssp CEEEEEECTTSSEEEEEE----------TTSCEEEEEBCSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETT--
T ss_pred ceEEEEECCCCCEEEEEe----------CCCEEEEEecCCCCcEEEEEEccc--cCCeEEEEecCCCcCCEEEEEcCC--
Confidence 578899999999998864 235666677765432222111111 114778899864 8888877543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC---ceecCCC-ceEEeeeeCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~---~~~lt~~-~~~~~~~~Sp 184 (751)
..|.++++ +|+ ...+..+ ..+..++|+|
T Consensus 77 -----------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p 109 (297)
T 2pm7_B 77 -----------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109 (297)
T ss_dssp -----------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC
T ss_pred -----------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCc
Confidence 36777777 553 2233334 6788999999
Q ss_pred C--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC---------
Q 004475 185 D--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK--------- 253 (751)
Q Consensus 185 D--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG--------- 253 (751)
+ |+.|+..+.+ ..+.+|++.++..... ..+......+..++|+|++
T Consensus 110 ~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~----------~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 110 HEYGPMLLVASSD-------------GKVSVVEFKENGTTSP----------IIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp GGGCSEEEEEETT-------------SEEEEEEBCSSSCBCC----------EEEECCSSCEEEEEECCCC---------
T ss_pred CCCCcEEEEEECC-------------CcEEEEEecCCCceee----------eeeecccCccceEeecCCcccccccCCC
Confidence 8 7887765443 3688899875421100 0011122345688999984
Q ss_pred ----CceEEEEEeccCCCCccccCcccceeeccCCCCCCCC----ceEeEeeceeEE-EEEecCC---ceEEEeeeeccc
Q 004475 254 ----PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK----PEILHKLDLRFS-VSWCDDS---LALVNETWYKTS 321 (751)
Q Consensus 254 ----~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~l~~~~~~~~-~~~spdg---~~l~~~~~~~~~ 321 (751)
+. |+..+ ..+.|.++++.. +.. ...+......+. ++|+|++ +.|+..+ ...
T Consensus 167 ~~~~~~-l~sgs------------~D~~v~lwd~~~--~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~ 229 (297)
T 2pm7_B 167 TKESRK-FVTGG------------ADNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDR 229 (297)
T ss_dssp ---CCE-EEEEE------------TTSCEEEEEEET--TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTS
T ss_pred CCCcce-EEEEc------------CCCcEEEEEEcC--CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCC
Confidence 33 44433 234677777641 111 122333455567 9999996 6666554 233
Q ss_pred ceeEEEecCCCCCCcceeeee--cccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 322 QTRTWLVCPGSKDVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.-.||.++.... .....+.. .....++. ++|+|||+.|+..+
T Consensus 230 ~v~iWd~~~~~~-~~~~~~~~~~~~~~~v~~------~~~s~~g~~las~~ 273 (297)
T 2pm7_B 230 TCIIWTQDNEQG-PWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (297)
T ss_dssp CEEEEEESSTTS-CCEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred cEEEEEeCCCCC-ccceeeeecccCCCcEEE------EEECCCCCEEEEEc
Confidence 345665543221 11112221 11112222 78999999998877
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-10 Score=121.04 Aligned_cols=280 Identities=14% Similarity=0.151 Sum_probs=167.0
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
.-..||+++ .||.. ....|+++++.+|+..++.....+. ..+..++|||||++|+..+.+
T Consensus 109 ~~l~wS~~n-~lAvg-----------ld~tV~lWd~~tg~~~~~~~~~~~~--~~V~sv~fspdg~~lasgs~D------ 168 (420)
T 4gga_A 109 NLVDWSSGN-VLAVA-----------LDNSVYLWSASSGDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSS------ 168 (420)
T ss_dssp BCEEECTTS-EEEEE-----------ETTEEEEEETTTCCEEEEEECCSTT--CCEEEEEECTTSSEEEEEETT------
T ss_pred eeEEECCCC-EEEEE-----------eCCEEEEEECCCCCEEEEEEecCCC--CcEEEEEECCCCCEEEEEECC------
Confidence 457899875 67763 2378999999999877665433221 137899999999999987543
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVL 190 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~ 190 (751)
..|.++++ +++ .+.+..+ ..+..+ ++|++.|+
T Consensus 169 -------------------------------------------g~v~iWd~~~~~~~~~~~~h~~~v~~~--s~~~~~l~ 203 (420)
T 4gga_A 169 -------------------------------------------AEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILS 203 (420)
T ss_dssp -------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEE--EEETTEEE
T ss_pred -------------------------------------------CeEEEEEcCCCcEEEEEeCCCCceEEE--eeCCCEEE
Confidence 45777787 663 3444444 444444 44677666
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
....+ ..+.+|+...... ..+..+ ...+..+.|+|+|+. ++...
T Consensus 204 sgs~d-------------~~i~~~d~~~~~~~~~~~~~h-------------~~~~~~~~~~~~g~~-l~s~~------- 249 (420)
T 4gga_A 204 SGSRS-------------GHIHHHDVRVAEHHVATLSGH-------------SQEVCGLRWAPDGRH-LASGG------- 249 (420)
T ss_dssp EEETT-------------SEEEEEETTSSSCEEEEEECC-------------SSCEEEEEECTTSSE-EEEEE-------
T ss_pred EEeCC-------------CceeEeeecccceeeEEeccc-------------ccceeeeeecCCCCe-eeeee-------
Confidence 54332 3577787764322 222111 223457899999997 54433
Q ss_pred ccccCcccceeeccCCCCCCC--CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..+.+.+++....... ...........+. ..|+|++..++..... +....|.+.++.++ ..........
T Consensus 250 -----~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~--~~~~~~~~~~ 321 (420)
T 4gga_A 250 -----NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSG--ACLSAVDAHS 321 (420)
T ss_dssp -----TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTT--EEEEEEECSS
T ss_pred -----ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCcc--ccceeecccc
Confidence 2346777776421111 1223334455666 8999998877655422 22346777787774 2222222211
Q ss_pred ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeee
Q 004475 346 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 425 (751)
Q Consensus 346 ~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 425 (751)
. +.. ..|+|+++.|+..+. .....|++||..+++....+..... .+..
T Consensus 322 ~-v~~------~~~~~~~~~lv~~sg-------------------~~d~~I~iwd~~~~~~v~~l~gH~~----~V~~-- 369 (420)
T 4gga_A 322 Q-VCS------ILWSPHYKELISGHG-------------------FAQNQLVIWKYPTMAKVAELKGHTS----RVLS-- 369 (420)
T ss_dssp C-EEE------EEEETTTTEEEEEEC-------------------TTTCCEEEEETTTCCEEEEECCCSS----CEEE--
T ss_pred c-eee------eeecCCCCeEEEEEe-------------------cCCCEEEEEECCCCcEEEEEcCCCC----CEEE--
Confidence 1 111 679999999988761 1234799999998876544432111 1222
Q ss_pred cCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 426 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 426 ~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
++|||||+.|+-. ... ..|.++|+.+.
T Consensus 370 -----l~~spdg~~l~S~-s~D---~tvriWdv~~~ 396 (420)
T 4gga_A 370 -----LTMSPDGATVASA-AAD---ETLRLWRCFEL 396 (420)
T ss_dssp -----EEECTTSSCEEEE-ETT---TEEEEECCSCS
T ss_pred -----EEEcCCCCEEEEE-ecC---CeEEEEECCCC
Confidence 5899999977643 332 35777777543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=119.16 Aligned_cols=263 Identities=11% Similarity=0.038 Sum_probs=155.0
Q ss_pred cceeEEeecCCCCCCCCcc---cccCCC-CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 4 FTGIGIHRLLPDDSLGPEK---EVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~---~l~~~~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
...|.+||+.. ++.. .+..+. ....+....|||||++|+... ....|.+++...+.......
T Consensus 60 D~~i~vWd~~~----~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~----------~d~~i~~~~~~~~~~~~~~~ 125 (340)
T 4aow_A 60 DKTIIMWKLTR----DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS----------WDGTLRLWDLTTGTTTRRFV 125 (340)
T ss_dssp TSCEEEEEECC----SSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCC----CCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc----------ccccceEEeecccceeeeec
Confidence 34689999987 4322 111111 233688899999999998753 33577888877765444433
Q ss_pred CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEE
Q 004475 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (751)
Q Consensus 80 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (751)
.... ......|+|+++.|+..+.+ ..+
T Consensus 126 ~~~~----~~~~~~~~~~~~~l~s~s~d-------------------------------------------------~~~ 152 (340)
T 4aow_A 126 GHTK----DVLSVAFSSDNRQIVSGSRD-------------------------------------------------KTI 152 (340)
T ss_dssp CCSS----CEEEEEECTTSSCEEEEETT-------------------------------------------------SCE
T ss_pred CCCC----ceeEEEEeecCccceeecCC-------------------------------------------------CeE
Confidence 2221 24567899999998877442 345
Q ss_pred EEEcCCC-Cc-e-ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 160 VLGSLDG-TA-K-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 160 ~~~~~~G-~~-~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
.++++.+ .. . .+..+ ..+...+|++++...++..... ...+.+||..+++......
T Consensus 153 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~-----------d~~i~i~d~~~~~~~~~~~--------- 212 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-----------DKLVKVWNLANCKLKTNHI--------- 212 (340)
T ss_dssp EEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET-----------TSCEEEEETTTTEEEEEEC---------
T ss_pred EEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC-----------CCEEEEEECCCCceeeEec---------
Confidence 6667633 21 1 12222 5677888999886544333221 3458899998765543211
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
.....+..++|+|||+. |+..+ ..+.|.++++. .............+. +.|+|++..++.
T Consensus 213 ---~h~~~v~~~~~s~~~~~-l~s~s------------~Dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 213 ---GHTGYLNTVTVSPDGSL-CASGG------------KDGQAMLWDLN---EGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp ---CCSSCEEEEEECTTSSE-EEEEE------------TTCEEEEEETT---TTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ---CCCCcEEEEEECCCCCE-EEEEe------------CCCeEEEEEec---cCceeeeecCCceEEeeecCCCCceeec
Confidence 11233568999999997 55543 23578888875 222222233344556 899999886654
Q ss_pred eeeecccceeEEEecCCCCCCcceeeee--------cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC
Q 004475 315 ETWYKTSQTRTWLVCPGSKDVAPRVLFD--------RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 386 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 386 (751)
+. ...|.+.++.++ .....+.. .....+. .++|+|||++|+..+.+
T Consensus 274 ~~-----d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~------~l~~s~dg~~l~sgs~D-------------- 327 (340)
T 4aow_A 274 AT-----GPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCT------SLAWSADGQTLFAGYTD-------------- 327 (340)
T ss_dssp EE-----TTEEEEEETTTT-EEEEEECCC-------CCCCCEE------EEEECTTSSEEEEEETT--------------
T ss_pred cC-----CCEEEEEECCCC-eEEEeccccceeeeccCCCCCEE------EEEECCCCCEEEEEeCC--------------
Confidence 43 235666677663 11111110 0111111 17899999998887732
Q ss_pred CCCCCCCceeEEEecCCCc
Q 004475 387 FTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 387 ~~~~~~~~~l~~~d~~~g~ 405 (751)
..|++||+++|+
T Consensus 328 -------g~v~iW~~~tGt 339 (340)
T 4aow_A 328 -------NLVRVWQVTIGT 339 (340)
T ss_dssp -------SCEEEEEEEC--
T ss_pred -------CEEEEEeCCCcC
Confidence 268899998885
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-11 Score=117.95 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCc---cC--ccc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTP---FG--FQT 647 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~~---~~--~~~ 647 (751)
.....+++.++++++.++.. .+++.++||||||.+++.++.++|+ +++.+|++++.++-.... .. ...
T Consensus 76 ~~~~~~~l~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~ 153 (249)
T 3fle_A 76 FKENAYWIKEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVD 153 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhc
Confidence 34567888899999987643 3589999999999999999998864 799999999876532110 00 000
Q ss_pred ccccchhhHHHHHhcC-cccccCCCCCCEEEEEcC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCCc
Q 004475 648 EFRTLWEATNVYIEMS-PITHANKIKKPILIIHGE------VDDKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHHV 718 (751)
Q Consensus 648 ~~~~~~~~~~~~~~~~-~~~~~~~~~~P~li~~G~------~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~ 718 (751)
....+......|.+.- ....+++.++|+|.|+|+ .|..|| ...++.+...++......+.++++| +.|.
T Consensus 154 ~~g~p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~--~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs 231 (249)
T 3fle_A 154 KQGKPSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVS--NSSSQSLQYLLRGSTKSYQEMKFKGAKAQHS 231 (249)
T ss_dssp TTCCBSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSB--HHHHHTHHHHSTTCSSEEEEEEEESGGGSTG
T ss_pred ccCCCcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCccc--HHHHHHHHHHHhhCCCceEEEEEeCCCCchh
Confidence 1111222122333321 122345467899999998 699999 8888888777777666667777766 8898
Q ss_pred CCccccHHHHHHHHHHHH
Q 004475 719 YAARENVMHVIWETDRWL 736 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl 736 (751)
.... ..++.+.+.+||
T Consensus 232 ~l~~--n~~V~~~I~~FL 247 (249)
T 3fle_A 232 QLHE--NKDVANEIIQFL 247 (249)
T ss_dssp GGGG--CHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHh
Confidence 7633 347888888887
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=122.17 Aligned_cols=227 Identities=13% Similarity=0.117 Sum_probs=134.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--Cee-eccCCCCccccceeeeeEEecC--CcEEEEeec
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAK-PLFESPDICLNAVFGSFVWVNN--STLLIFTIP 106 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--~~~-~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~ 106 (751)
.+...+|||||++||... ..+.|.++++.++ +.. .+..... .+..++|+|+ ++.|+..+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp CEEEEEECSSSSEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEE----------CCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEecc
Confidence 588899999999998863 2245566666533 332 2222221 4778999987 888887744
Q ss_pred CCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC---ceecCCC-ceEEeee
Q 004475 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVE 181 (751)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~---~~~lt~~-~~~~~~~ 181 (751)
+ ..|.++++ +++ ...+..+ ..+..++
T Consensus 78 d-------------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 108 (379)
T 3jrp_A 78 D-------------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQ 108 (379)
T ss_dssp T-------------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred C-------------------------------------------------CEEEEEEcCCCceeEeeeecCCCcceEEEE
Confidence 2 35667777 553 3334434 7788999
Q ss_pred eCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec--------
Q 004475 182 PSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-------- 251 (751)
Q Consensus 182 ~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-------- 251 (751)
|+|+ |+.|+....+ ..+.+||+.+........ +......+..+.|+|
T Consensus 109 ~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 109 WAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPII----------IDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp ECCGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEE----------EECCTTCEEEEEECCCC------
T ss_pred eCCCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEE----------ecCCCCceEEEEEcCcccccccc
Confidence 9999 8888876543 368899987653211100 111223456889999
Q ss_pred -----CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc----eEeEeeceeEE-EEEecC---CceEEEeeee
Q 004475 252 -----DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP----EILHKLDLRFS-VSWCDD---SLALVNETWY 318 (751)
Q Consensus 252 -----dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~spd---g~~l~~~~~~ 318 (751)
|++. ++... ..+.|+++++.. +... ..+......+. +.|+|+ ++.|+....
T Consensus 166 ~~~~~~~~~-l~~~~------------~dg~i~i~d~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~- 229 (379)
T 3jrp_A 166 HNGTKESRK-FVTGG------------ADNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ- 229 (379)
T ss_dssp ----CTTCE-EEEEE------------TTSCEEEEEEET--TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-
T ss_pred ccCCCCCCE-EEEEe------------CCCeEEEEEecC--CCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-
Confidence 6776 55543 235788888741 1111 12223455667 999999 787776552
Q ss_pred cccceeEEEecCCCCCCc-ceeeeec--ccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 319 KTSQTRTWLVCPGSKDVA-PRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~-~~~l~~~--~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+ .|.++++.++... ...+... ....+.. ++|+|||+.|+..+
T Consensus 230 -dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 230 -DR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 275 (379)
T ss_dssp -TS--CEEEEEESSTTSCCEEEESSSSCCSSCEEE------EEECSSSCCEEEEE
T ss_pred -CC--EEEEEeCCCCCccceeeeeccccCCCcEEE------EEEcCCCCEEEEec
Confidence 23 3444444443111 1122211 1111222 78999999998877
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=126.41 Aligned_cols=203 Identities=16% Similarity=0.077 Sum_probs=121.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+.. +....| ..+...| ..||.|++ ++.+|+|.+...........+++.+.++.
T Consensus 81 ~~~lv~lhG~~~~---------~~~~~~----~~~~~~L-~~~~~v~~---~d~~G~G~~~~~~~~~~~~~~~~~~~l~~ 143 (319)
T 3lcr_A 81 GPQLILVCPTVMT---------TGPQVY----SRLAEEL-DAGRRVSA---LVPPGFHGGQALPATLTVLVRSLADVVQA 143 (319)
T ss_dssp SCEEEEECCSSTT---------CSGGGG----HHHHHHH-CTTSEEEE---EECTTSSTTCCEESSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCcC---------CCHHHH----HHHHHHh-CCCceEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5889999993100 010111 1233344 78999999 56667776554444456666666666655
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCCCCCC-cc-Cccccc-cc--------------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYNKTLT-PF-GFQTEF-RT-------------- 651 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d~~~~-~~-~~~~~~-~~-------------- 651 (751)
+.. ..++.|+||||||.+|+.+|.+. |++++++|++++....... .. .+.... ..
T Consensus 144 ~~~-----~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
T 3lcr_A 144 EVA-----DGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNL 218 (319)
T ss_dssp HHT-----TSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred hcC-----CCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCch
Confidence 432 25799999999999999999887 7889999998875432210 00 000000 00
Q ss_pred --chhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 652 --LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 652 --~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
.......+...........+++|+|+++|++| .++ +.....+.+.+.. .++++++++..|.+...+....+.
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~i~~PvLli~g~~~-~~~--~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va 292 (319)
T 3lcr_A 219 SQRITAQVWCLELLRGWRPEGLTAPTLYVRPAQP-LVE--QEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTA 292 (319)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCSSCEEEEEESSC-SSS--CCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCCCEEEEEeCCC-CCC--cccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHH
Confidence 00000001111111122578899999999984 454 4555666665553 357888887544443335788999
Q ss_pred HHHHHHHHHHhcC
Q 004475 730 WETDRWLQKYCLS 742 (751)
Q Consensus 730 ~~~~~fl~~~l~~ 742 (751)
+.+.+||.+....
T Consensus 293 ~~i~~fL~~~~~~ 305 (319)
T 3lcr_A 293 HIVGDWLREAHAH 305 (319)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccc
Confidence 9999999987643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-10 Score=116.77 Aligned_cols=303 Identities=14% Similarity=0.073 Sum_probs=155.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCcc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~ 84 (751)
.|+++|+.+ ++.... ++.+... ..++||||++|+.+.........++....|.++|+++++... +.-.....
T Consensus 32 ~v~v~D~~t----~~~~~~--i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 32 RVHVYDYTN----GKFLGM--VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp EEEEEETTT----CCEEEE--EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred eEEEEECCC----CeEEEE--ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 678888877 776543 2344334 889999999987765311000111234578999998876433 32111100
Q ss_pred -ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 85 -LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 85 -~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.......+++||||++|+..... ....|.++|
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~-----------------------------------------------~~~~v~v~d 137 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNAS-----------------------------------------------PATSIGIVD 137 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEES-----------------------------------------------SSEEEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCC-----------------------------------------------CCCeEEEEE
Confidence 00013577999999999887321 014678888
Q ss_pred C-CCCc-ee-cCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCccCC
Q 004475 164 L-DGTA-KD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~-~G~~-~~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+ +++. .. +.- .....+.+.|+|+..++.... ...+..++.+. ++........ ..+.
T Consensus 138 ~~~~~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~------------dg~~~~v~~~~~g~~~~~~~~~------~~~~- 197 (361)
T 2oiz_A 138 VAKGDYVEDVTAA-AGCWSVIPQPNRPRSFMTICG------------DGGLLTINLGEDGKVASQSRSK------QMFS- 197 (361)
T ss_dssp TTTTEEEEEEGGG-TTEEEEEECTTSSSEEEEEET------------TSSEEEEEECTTSSEEEEEECC------CCSC-
T ss_pred CCCCcEEEEEecC-CCcceeEEcCCCCeeEEEECC------------CCcEEEEEECCCCcEeeecccc------ceEc-
Confidence 8 5533 33 321 222224456666443333222 11233333321 2111000000 0000
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------eceeEE-EEE
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------LDLRFS-VSW 305 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~~~~~~-~~~ 305 (751)
.......+.++|||+. +++.+ ..+.++++++. +.....+.. ...... +++
T Consensus 198 ~~~~~~~~~~~~~g~~-~~~~~------------~~~~v~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDK-AHFVS------------YYGNVYSADFS---GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTTSCBCSCCEECSSE-EEEEB------------TTSEEEEEECS---SSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCCceEEEecccCCE-EEEEe------------CCCeEEEEEec---CCCceecccccccCccccccccccCCeeEEEE
Confidence 0011224466899887 56643 22468888874 222222111 011112 588
Q ss_pred ecCCceEEEeeeec-------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcce
Q 004475 306 CDDSLALVNETWYK-------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 378 (751)
Q Consensus 306 spdg~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 378 (751)
+|||+.++...... .....|+++|+.+. .....+.... .+. ++|||||++|+...
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~---p~~------ia~spdg~~l~v~n-------- 323 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD---ALS------MTIDQQRNLMLTLD-------- 323 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT---CCE------EEEETTTTEEEEEC--------
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC---eeE------EEECCCCCEEEEeC--------
Confidence 99999877654211 12358999999885 1112222222 222 88999999776443
Q ss_pred EEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCE
Q 004475 379 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLK 439 (751)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 439 (751)
. ..|.+||+++++++.+-.... .-..+..++++|||++
T Consensus 324 -------------~-~~v~v~D~~t~~l~~~~~i~~---------~G~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 324 -------------G-GNVNVYDISQPEPKLLRTIEG---------AAEASLQVQFHPVGGT 361 (361)
T ss_dssp -------------S-SCEEEEECSSSSCEEEEEETT---------SCSSEEEEEECCCSCC
T ss_pred -------------C-CeEEEEECCCCcceeeEEecc---------CCCCcEEEEecCCCCC
Confidence 1 478999999983333322100 0011233588999863
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-09 Score=112.34 Aligned_cols=307 Identities=10% Similarity=0.020 Sum_probs=157.5
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
...+|||++ +|+.+.. ..+....|+++|+++++...-..... .- .+++||||++|++.........
T Consensus 26 ~~~~~~~~~-~yv~~~~----~~~~~~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spDg~~lyv~n~~~~~~~--- 91 (373)
T 2mad_H 26 EAPGADGRR-SYINLPA----HHSAIIQQWVLDAGSGSILGHVNGGF-----LP-NPVAAHSGSEFALASTSFSRIA--- 91 (373)
T ss_pred ccCCCCCCE-EEEeCCc----ccCCccEEEEEECCCCeEEEEecCCC-----CC-CeEECCCCCEEEEEeccccccc---
Confidence 345589966 5654310 00111188999999887543221111 12 7799999999998843100000
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCC--------CceEEeeeeCCC
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT--------PAVYTAVEPSPD 185 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~--------~~~~~~~~~SpD 185 (751)
.+ .....|.++|. +++. ..+.- ......+.||||
T Consensus 92 -------------rg-----------------------~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD 135 (373)
T 2mad_H 92 -------------KG-----------------------KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred -------------cC-----------------------CCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence 00 00135667777 4432 22211 112347899999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
|++|++..... ...|.++| ++++.... ...+. .+.+.|+|++ .+++..
T Consensus 136 G~~l~v~n~~~-----------~~~v~viD-~t~~~~~~~i~~~~----------------~~~~~~~~~~-~~~~~~-- 184 (373)
T 2mad_H 136 NADLLFFQFAA-----------GPAVGLVV-QGGSSDDQLLSSPT----------------CYHIHPGAPS-TFYLLC-- 184 (373)
T ss_pred CCEEEEEecCC-----------CCeEEEEE-CCCCEEeEEcCCCc----------------eEEEEeCCCc-eEEEEc--
Confidence 99999975321 24688999 87755422 22211 2345566665 333221
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEe------EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcc
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEIL------HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 337 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (751)
..+.+..++.. +.....+ ........ +.+++++..++|.+. ...++++|..+. ..
T Consensus 185 ---------~dg~~~~vd~~---g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~v~vid~~~~--~~ 246 (373)
T 2mad_H 185 ---------AQGGLAKTDHA---GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADISAA--GA 246 (373)
T ss_pred ---------CCCCEEEEECC---CcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----CceEEEEeccCC--cc
Confidence 11233334331 2111111 11111123 678888888877662 247999998764 22
Q ss_pred eeeeecccc--cccC---CC-CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 338 RVLFDRVFE--NVYS---DP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 338 ~~l~~~~~~--~~~~---~~-~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+.+...... .... .+ +...++++|||+.|+..... +...+.......|+++|+++++...-+.
T Consensus 247 ~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~-----------~~~~~~~~~~~~V~VID~~t~~vv~~i~ 315 (373)
T 2mad_H 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE-----------QSAWKLHAAAKEVTSVTGLVGQTSSQIS 315 (373)
T ss_pred eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc-----------CCcccccCCCCeEEEEECCCCEEEEEEE
Confidence 222211100 0000 00 00114466666666554421 0000111123579999999887744333
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
... .+..++|||||++++|+.... ...++++|+.+++....
T Consensus 316 ~g~------------~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 316 LGH------------DVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCC------------CcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEee
Confidence 221 234468999999766664322 35799999999876643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-09 Score=120.08 Aligned_cols=325 Identities=10% Similarity=-0.022 Sum_probs=180.5
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcC--CCCe-eeccCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESP 81 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~--~g~~-~~lt~~~ 81 (751)
..|.++|+.+ ++..... +.+.....+.+||||++++... ....|.++|+. +++. ..+..+.
T Consensus 177 ~~V~viD~~t----~~v~~~i--~~g~~p~~v~~SpDGr~lyv~~----------~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 177 GQIALIDGST----YEIKTVL--DTGYAVHISRLSASGRYLFVIG----------RDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp TEEEEEETTT----CCEEEEE--ECSSCEEEEEECTTSCEEEEEE----------TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CeEEEEECCC----CeEEEEE--eCCCCccceEECCCCCEEEEEc----------CCCeEEEEECCCCCCcEeEEEecCC
Confidence 3688999988 8766432 3333456889999999876542 23579999985 5542 2332111
Q ss_pred CccccceeeeeEEe----cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 82 DICLNAVFGSFVWV----NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 82 ~~~~~~~~~~~~ws----pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
....+++| |||++|+..... ..
T Consensus 241 ------~P~~ia~s~~~~pDGk~l~v~n~~------------------------------------------------~~ 266 (567)
T 1qks_A 241 ------EARSIETSKMEGWEDKYAIAGAYW------------------------------------------------PP 266 (567)
T ss_dssp ------EEEEEEECCSTTCTTTEEEEEEEE------------------------------------------------TT
T ss_pred ------CCceeEEccccCCCCCEEEEEEcc------------------------------------------------CC
Confidence 23578999 799999887432 13
Q ss_pred EEEEEcC-CCCcee-cCCC------------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee
Q 004475 158 QLVLGSL-DGTAKD-FGTP------------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (751)
Q Consensus 158 ~l~~~~~-~G~~~~-lt~~------------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (751)
++.++|. +.+... +.-. ..+..+..|+++..+++.... ...|+++|....+...
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~------------~g~v~~vd~~~~~~~~ 334 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLK 334 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC------------CCeEEEEecCCCccce
Confidence 5666666 443222 1100 134567788988877665432 4578888876543222
Q ss_pred eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--cee-
Q 004475 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLR- 300 (751)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~- 300 (751)
++..+. ......+.|+|||++ ++.+.. ..+.|.++|++ .......... ...
T Consensus 335 v~~i~~-----------~~~~~d~~~~pdgr~-~~va~~-----------~sn~V~ViD~~---t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 335 TTEISA-----------ERFLHDGGLDGSHRY-FITAAN-----------ARNKLVVIDTK---EGKLVAIEDTGGQTPH 388 (567)
T ss_dssp EEEEEC-----------CSSEEEEEECTTSCE-EEEEEG-----------GGTEEEEEETT---TTEEEEEEECSSSSBC
T ss_pred eeeeec-----------cccccCceECCCCCE-EEEEeC-----------CCCeEEEEECC---CCcEEEEEeccCcCCC
Confidence 211111 112346799999998 555431 23578888885 2222221121 111
Q ss_pred E-E-EE-EecCCceEEEeeeecccceeEEEecCCCCCC---cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 301 F-S-VS-WCDDSLALVNETWYKTSQTRTWLVCPGSKDV---APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 301 ~-~-~~-~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
. . +. ++|++..++++.+.. ...|-+++.+.... ..+.+....... .+...+..+|||++|+.....
T Consensus 389 pg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~-- 460 (567)
T 1qks_A 389 PGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATL-- 460 (567)
T ss_dssp CTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTT--
T ss_pred CccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCC--
Confidence 1 1 33 478888776655322 24577777765311 012222111111 111226689999998775511
Q ss_pred CcceEEEEccCCCCCC-CCCceeEEEecCCC-----ce--eEEeeccchhh---hhceeeeecCCcceeeccCCCEEEEE
Q 004475 375 DEQIYILLNGRGFTPE-GNIPFLDLFDINTG-----SK--ERIWESNREKY---FETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~~~~~l~~~d~~~g-----~~--~~l~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
.++ .....|.++|.++. .. ..+.-.++... -.++. .+.|++||++++++
T Consensus 461 -------------~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~G~~~~~s 520 (567)
T 1qks_A 461 -------------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV-------QGEFNKDGTEVWFS 520 (567)
T ss_dssp -------------CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE-------EEEECTTSSEEEEE
T ss_pred -------------CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE-------eeeECCCCCEEEEE
Confidence 010 01237888898766 21 22211100000 00112 25899999999998
Q ss_pred EecC-CCCCeEEEEEcCCCceeE
Q 004475 444 KESK-TEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 444 ~~~~-~~~~~l~~~~~~~g~~~~ 465 (751)
.++. .....|.++|..++++..
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EECCTTSCCEEEEEETTTTEEEE
T ss_pred eecCCCCCCcEEEEECCCceEEE
Confidence 7653 346789999998887653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=120.27 Aligned_cols=267 Identities=12% Similarity=0.091 Sum_probs=151.0
Q ss_pred ccccceeecCC---CCeEEEEEeecccccccCCceeEEEEEcCC-CCe--eeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 31 AKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 31 ~~~~~p~~SPD---G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~-g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
..+...+|||| |++|+... ..+.|.++++.+ ++. +.+..... .+..++|+|||++|+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGS----------WANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEE----------TTSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEEC----------CCCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEE
Confidence 36899999999 68888753 335677777776 433 23322222 47789999999999877
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEP 182 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~ 182 (751)
+.+ ..|.++++ +++...+..+ ..+..+.|
T Consensus 105 ~~d-------------------------------------------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~ 135 (368)
T 3mmy_A 105 SCD-------------------------------------------------KTAKMWDLSSNQAIQIAQHDAPVKTIHW 135 (368)
T ss_dssp ETT-------------------------------------------------SEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred cCC-------------------------------------------------CcEEEEEcCCCCceeeccccCceEEEEE
Confidence 432 47888888 6655555444 77889999
Q ss_pred --CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 183 --SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 183 --SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
+|||+.|+....+ ..+.+||+.+++......... ....+.+.+.. ++..
T Consensus 136 ~~~~~~~~l~~~~~d-------------g~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~ 186 (368)
T 3mmy_A 136 IKAPNYSCVMTGSWD-------------KTLKFWDTRSSNPMMVLQLPE---------------RCYCADVIYPM-AVVA 186 (368)
T ss_dssp EECSSCEEEEEEETT-------------SEEEEECSSCSSCSEEEECSS---------------CEEEEEEETTE-EEEE
T ss_pred EeCCCCCEEEEccCC-------------CcEEEEECCCCcEEEEEecCC---------------CceEEEecCCe-eEEE
Confidence 9999988876543 368899998665433222111 12233444444 3433
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEe-eceeEE-EEEecCCce----EEEeeeecccceeEEEecCCCCC
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFS-VSWCDDSLA----LVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~-~~~spdg~~----l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
. ..+.+.++++... ......+.. ...... ..+.+++.. ++... .. ..|.+.+.....
T Consensus 187 ~------------~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d--g~i~i~~~~~~~ 249 (368)
T 3mmy_A 187 T------------AERGLIVYQLENQ-PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IE--GRVAIHYINPPN 249 (368)
T ss_dssp E------------GGGCEEEEECSSS-CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TT--SEEEEEESSCSC
T ss_pred e------------CCCcEEEEEeccc-cchhhhccccccCCCceEEEcccCCCCCCeEEEec--CC--CcEEEEecCCCC
Confidence 2 2246667766411 111111111 112223 444444443 54443 22 344445554431
Q ss_pred C-cceeeeecccc------------cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 335 V-APRVLFDRVFE------------NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 335 ~-~~~~l~~~~~~------------~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
. ........... .+.. ++|+|||++|+..+.+ ..|++||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~sp~~~~l~s~~~d---------------------g~i~iwd~ 302 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNG------IAFHPVHGTLATVGSD---------------------GRFSFWDK 302 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEE------EEECTTTCCEEEEETT---------------------SCEEEEET
T ss_pred ccccceeeeeeecccccccccccccceEE------EEEecCCCEEEEEccC---------------------CeEEEEEC
Confidence 1 11111111111 1222 7899999999887732 26999999
Q ss_pred CCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEe
Q 004475 402 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE 445 (751)
Q Consensus 402 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 445 (751)
.+++.......... .+ ..++|||||+.|+....
T Consensus 303 ~~~~~~~~~~~~~~----~v-------~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 303 DARTKLKTSEQLDQ----PI-------SACCFNHNGNIFAYASS 335 (368)
T ss_dssp TTTEEEEECCCCSS----CE-------EEEEECTTSSCEEEEEC
T ss_pred CCCcEEEEecCCCC----Cc-------eEEEECCCCCeEEEEec
Confidence 98876544332111 12 22589999998887753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-10 Score=128.15 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=139.7
Q ss_pred ceeEEeecCCCCCCC----Ccc-cccCCCCccc-ccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCC----
Q 004475 5 TGIGIHRLLPDDSLG----PEK-EVHGYPDGAK-INFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETG---- 72 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g----~~~-~l~~~~~~~~-~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g---- 72 (751)
..|.+|++.+ + +.. .+. ..... +...+||| ||++||... ..+.|.++++.++
T Consensus 39 ~~v~v~~~~~----~~~~~~~~~~~~--~h~~~~v~~~~~sp~~~~~~l~s~~----------~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 39 KSAFVRCLDD----GDSKVPPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGD----------ESGKVIVWGWTFDKESN 102 (615)
T ss_dssp TEEEEEECCS----SCCSSCSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEE----------TTSEEEEEEEEEEGGGT
T ss_pred CeEEEEECCC----CCCccccceEEe--cCCCceEEEEEECcCCCCCEEEEec----------CCCEEEEEeCCCCcccc
Confidence 3689999987 6 333 333 22335 78999999 999999864 2356777777554
Q ss_pred --CeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhh
Q 004475 73 --EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (751)
Q Consensus 73 --~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (751)
+.+.+.....+ ...+..++|+|||++|+....+...
T Consensus 103 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~---------------------------------------- 140 (615)
T 1pgu_A 103 SVEVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDN---------------------------------------- 140 (615)
T ss_dssp EEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSC----------------------------------------
T ss_pred cccccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCC----------------------------------------
Confidence 22222111111 1147789999999999988543211
Q ss_pred hhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCC
Q 004475 151 FDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLP 228 (751)
Q Consensus 151 ~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~ 228 (751)
...|++++.......+..+ ..+..++|+|||+.++++... ...+.+||..+++... +..+.
T Consensus 141 -----~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 141 -----FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp -----SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSS
T ss_pred -----ccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeC------------CCcEEEEeCCCcceeeeecccC
Confidence 1578888843344555555 778899999999955554433 3468899988765432 21111
Q ss_pred CCCCCCCccCCccCCCceeeeecC-CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-E---eeceeEE-
Q 004475 229 PAEDIPVCYNSVREGMRSISWRAD-KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-H---KLDLRFS- 302 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spd-G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~---~~~~~~~- 302 (751)
. ....+..++|+|| |+. ++... ..+.|+++++.. +.....+ . .....+.
T Consensus 204 ~----------~~~~v~~~~~~~~~~~~-l~~~~------------~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 204 K----------QGSFVRDVEFSPDSGEF-VITVG------------SDRKISCFDGKS--GEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp C----------TTCCEEEEEECSTTCCE-EEEEE------------TTCCEEEEETTT--CCEEEECCBTTBCCCSCEEE
T ss_pred C----------CCceEEEEEECCCCCCE-EEEEe------------CCCeEEEEECCC--CCEeEEecccccccCCceEE
Confidence 1 0013668999999 887 55543 235788888751 2223333 2 4455666
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+.|+ +++.|+.... ...|.+.++.++
T Consensus 259 ~~~~-~~~~l~~~~~----d~~i~~wd~~~~ 284 (615)
T 1pgu_A 259 LSWL-DSQKFATVGA----DATIRVWDVTTS 284 (615)
T ss_dssp EEES-SSSEEEEEET----TSEEEEEETTTT
T ss_pred EEEc-CCCEEEEEcC----CCcEEEEECCCC
Confidence 8999 9998877652 245667777664
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=122.37 Aligned_cols=258 Identities=11% Similarity=0.025 Sum_probs=149.5
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--------e
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------K 75 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--------~ 75 (751)
...|.+||+.+ ++...... .....+...+|||||++||... ....+.++++.++.. +
T Consensus 87 D~~v~iWd~~~----~~~~~~~~-~h~~~v~~~~~s~~g~~las~~----------~d~~v~iw~~~~~~~~~~~~~~~~ 151 (380)
T 3iz6_a 87 DGRLIVWNALT----SQKTHAIK-LHCPWVMECAFAPNGQSVACGG----------LDSACSIFNLSSQADRDGNMPVSR 151 (380)
T ss_dssp TSEEEEEETTT----TEEEEEEE-CCCTTCCCCEECTTSSEEEECC----------SSSCCEEEECCCCSSCCCSSTTCC
T ss_pred CCeEEEEECCC----CccceEEe-cCCCCEEEEEECCCCCEEEEee----------CCCcEEEEECCCCccccCCcccee
Confidence 45799999988 66554321 1233578899999999998853 234455555543221 1
Q ss_pred eccCCCCccccceeeeeEEecCCc-EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhh
Q 004475 76 PLFESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (751)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (751)
.++... ..+..+.|+|++. .|+..+.+
T Consensus 152 ~~~gh~-----~~v~~~~~~~~~~~~l~s~s~D----------------------------------------------- 179 (380)
T 3iz6_a 152 VLTGHK-----GYASSCQYVPDQETRLITGSGD----------------------------------------------- 179 (380)
T ss_dssp BCCCCS-----SCCCCCBCCSSSSSCEEEECTT-----------------------------------------------
T ss_pred eccCCC-----cceEEEEEecCCCCEEEEECCC-----------------------------------------------
Confidence 121111 1356778999865 45554322
Q ss_pred eeeEEEEEcC-CCCce-ec-----CCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCC-ce-eee
Q 004475 155 TTAQLVLGSL-DGTAK-DF-----GTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KL-VRE 223 (751)
Q Consensus 155 ~~~~l~~~~~-~G~~~-~l-----t~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~-~~~ 223 (751)
..|.++|+ +|+.. .+ ..+ ..+..+.|+| |++.|+..+.+ ..+.+||+.. +. .+.
T Consensus 180 --~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-------------~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 180 --QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-------------TTVRLWDLRITSRAVRT 244 (380)
T ss_dssp --SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-------------SCEEEEETTTTCCCCEE
T ss_pred --CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-------------CeEEEEECCCCCcceEE
Confidence 46777788 66432 22 122 5677888877 77777655433 3688999863 22 222
Q ss_pred eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEee-----
Q 004475 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL----- 297 (751)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~----- 297 (751)
+.. ....+..++|+|||+. ++..+ ..+.|.++++. .+.... +...
T Consensus 245 ~~~-------------h~~~v~~v~~~p~~~~-l~s~s------------~D~~i~lwd~~---~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 245 YHG-------------HEGDINSVKFFPDGQR-FGTGS------------DDGTCRLFDMR---TGHQLQVYNREPDRND 295 (380)
T ss_dssp ECC-------------CSSCCCEEEECTTSSE-EEEEC------------SSSCEEEEETT---TTEEEEEECCCCSSSC
T ss_pred ECC-------------cCCCeEEEEEecCCCe-EEEEc------------CCCeEEEEECC---CCcEEEEecccccccc
Confidence 211 2234668999999997 55543 23567788774 222111 1111
Q ss_pred --ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee---ecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 298 --DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 298 --~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
...+. ++|||+|+.|+.... ...|++.|...+ .....+. ......+.. ++|||||+.|+..+.
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~-~~~~~~~~~~~~h~~~v~~------l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAGYS----NGDCYVWDTLLA-EMVLNLGTLQNSHEGRISC------LGLSSDGSALCTGSW 364 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEECT----TSCEEEEETTTC-CEEEEECCSCSSCCCCCCE------EEECSSSSEEEEECT
T ss_pred cccCceEEEEECCCCCEEEEEEC----CCCEEEEECCCC-ceEEEEecccCCCCCceEE------EEECCCCCEEEEeeC
Confidence 01234 899999998887552 346777777654 1111221 111112222 789999999888773
Q ss_pred ecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 372 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
+ ..|.+|++.++
T Consensus 365 D---------------------~~i~iW~~~~~ 376 (380)
T 3iz6_a 365 D---------------------KNLKIWAFSGH 376 (380)
T ss_dssp T---------------------SCEEEEECCSS
T ss_pred C---------------------CCEEEEecCCC
Confidence 3 26888888754
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-13 Score=143.30 Aligned_cols=211 Identities=18% Similarity=0.090 Sum_probs=131.7
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC-eEEEEcCCC-CCCCCCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PIIGEGD 570 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~v~~~~~~-~~~g~g~ 570 (751)
-+...+|.|... ..++|+||++|||||..++.. ... .....|+++| ++|+.++|+ +..|++.
T Consensus 82 cL~l~v~~P~~~----~~~~PviV~iHGGg~~~g~~~--------~~~----~~~~~la~~g~~vvv~~nYRlg~~Gf~~ 145 (489)
T 1qe3_A 82 CLYVNVFAPDTP----SQNLPVMVWIHGGAFYLGAGS--------EPL----YDGSKLAAQGEVIVVTLNYRLGPFGFLH 145 (489)
T ss_dssp CCEEEEEEECSS----CCSEEEEEEECCSTTTSCCTT--------SGG----GCCHHHHHHHTCEEEEECCCCHHHHSCC
T ss_pred CCEEEEEeCCCC----CCCCCEEEEECCCccccCCCC--------Ccc----cCHHHHHhcCCEEEEecCccCcccccCc
Confidence 467778888652 124899999999987543321 110 1134566665 999998886 2234433
Q ss_pred CCC--CchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCCCCCCcc
Q 004475 571 KLP--NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 571 ~~~--~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d~~~~~~ 643 (751)
... ........+.|+..+++|+++.. ..|+++|.|+|+|+||++++.++... ++.|+++|+.+|..+......
T Consensus 146 ~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~ 225 (489)
T 1qe3_A 146 LSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQ 225 (489)
T ss_dssp CTTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHH
Confidence 211 01112234788899999998752 35899999999999999998887653 568999999999763211000
Q ss_pred C------cccccccchhhHHH---------HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 004475 644 G------FQTEFRTLWEATNV---------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708 (751)
Q Consensus 644 ~------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~ 708 (751)
. +....+......+. +...+++.+......|.+++++..|..+. +.+..+++++.+..++++.
T Consensus 226 ~~~~~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~--~~~~~~~~~~~~~~~vp~~ 303 (489)
T 1qe3_A 226 AASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTL--PEEPEKSIAEGAASGIPLL 303 (489)
T ss_dssp HHHHHHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTB--CSCHHHHHHTTTTTTCCEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeec--CcCHHHHHhcCCCCCCCEE
Confidence 0 00000000000111 11111111111234557788999998887 7888888887777889999
Q ss_pred EEEeCCCCCcCCc
Q 004475 709 LVLLPFEHHVYAA 721 (751)
Q Consensus 709 ~~~~~~~~H~~~~ 721 (751)
+-..++++|.+..
T Consensus 304 ~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 304 IGTTRDEGYLFFT 316 (489)
T ss_dssp EEEETTGGGGTCC
T ss_pred EeeecchhHhhcc
Confidence 9999999998754
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=119.59 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCccC---ccc-
Q 004475 577 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTPFG---FQT- 647 (751)
Q Consensus 577 ~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~~~~d~~~~~~~---~~~- 647 (751)
......+++..+++.+.++..+ .++.++||||||.+++.++.++|+ +++++|++++.++....... ...
T Consensus 72 ~~~~~a~~l~~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~ 149 (254)
T 3ds8_A 72 TPDDWSKWLKIAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFK 149 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccc
Confidence 3566788888889998876433 689999999999999999999988 89999999987663211000 000
Q ss_pred ccccchhhHHHHHhcCcccccCCCCCCEEEEEcC------CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC--CCCcC
Q 004475 648 EFRTLWEATNVYIEMSPITHANKIKKPILIIHGE------VDDKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHHVY 719 (751)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~------~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H~~ 719 (751)
...........+... ...+.+ ++|+|.|+|. .|.+|| ...++.+...+.......+..++.+ ++|..
T Consensus 150 ~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp--~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs~ 224 (254)
T 3ds8_A 150 KLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVP--TISSLATRLFMPGSAKAYIEDIQVGEDAVHQT 224 (254)
T ss_dssp SCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSB--HHHHTGGGGTSBTTBSEEEEEEEESGGGCGGG
T ss_pred cCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEee--HHHHHHHHHHhhccCcceEEEEEeCCCCchhc
Confidence 000001111111111 112222 6899999999 999999 8888877776665544566666766 66886
Q ss_pred CccccHHHHHHHHHHHHHHHhc
Q 004475 720 AARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.. ++ .++.+.+..||.+...
T Consensus 225 l~-~~-~~v~~~i~~fL~~~~~ 244 (254)
T 3ds8_A 225 LH-ET-PKSIEKTYWFLEKFKT 244 (254)
T ss_dssp GG-GS-HHHHHHHHHHHHTCCC
T ss_pred cc-CC-HHHHHHHHHHHHHhcC
Confidence 53 33 3588899999988754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-10 Score=119.64 Aligned_cols=175 Identities=11% Similarity=0.077 Sum_probs=89.4
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-----ceeEE-EEEecCCceEEEeee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~~-~~~spdg~~l~~~~~ 317 (751)
+..++|||||++ ++.+.. ..+.|+++++++ ++ ....+... ..... ++|||||++|+....
T Consensus 147 ~~~~~~spdG~~-l~~~~~-----------~~~~v~~~~~~~-~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 147 IHGMVFDPTETY-LYSADL-----------TANKLWTHRKLA-SG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp EEEEEECTTSSE-EEEEET-----------TTTEEEEEEECT-TS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCCE-EEEEcC-----------CCCEEEEEEECC-CC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 457899999998 655431 124788888742 22 33222221 22345 899999998877653
Q ss_pred ecccceeEEEecCCCCCCcc--eeeeecccccccCCC-------CCCCee-eCCCCCEEEEeeeecCCcceEEEEccCCC
Q 004475 318 YKTSQTRTWLVCPGSKDVAP--RVLFDRVFENVYSDP-------GSPMMT-RTSTGTNVIAKIKKENDEQIYILLNGRGF 387 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~~-------~~~~~~-~spDG~~l~~~~~~~~~~~~~~~~~~~~~ 387 (751)
. +..-.+|.++..++.... ..+...... ..... ....++ |||||++|+......+
T Consensus 213 ~-~~~v~v~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~------------- 277 (365)
T 1jof_A 213 A-GNRICEYVIDPATHMPVYTHHSFPLIPPG-IPDRDPETGKGLYRADVCALTFSGKYMFASSRANK------------- 277 (365)
T ss_dssp T-TTEEEEEEECTTTCCEEEEEEEEESSCTT-CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS-------------
T ss_pred C-CCeEEEEEEeCCCCcEEEccceEEcCCCC-cCCcccccccccccccEEEECCCCCEEEEECCCCC-------------
Confidence 2 233456666665531110 111111000 00000 011278 9999998876552210
Q ss_pred CCCCCCceeEEEecC-CCceeEEee-ccchhhhhceeeeecCCcceeecc---CCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 388 TPEGNIPFLDLFDIN-TGSKERIWE-SNREKYFETAVALVFGQGEEDINL---NQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 388 ~~~~~~~~l~~~d~~-~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
......|.+|+++ +|+...+.. ... ....+..++||| ||++|++.... ...+.+++++..
T Consensus 278 --~~~~~~i~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~a~sp~~~dg~~l~v~~~~---~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 --FELQGYIAGFKLRDCGSIEKQLFLSPT---------PTSGGHSNAVSPCPWSDEWMAITDDQ---EGWLEIYRWKDE 342 (365)
T ss_dssp --TTSCCEEEEEEECTTSCEEEEEEEEEC---------SSCCTTCCCEEECTTCTTEEEEECSS---SCEEEEEEEETT
T ss_pred --CCCCCeEEEEEECCCCCEEEeeeeeec---------CCCCcccceecCCCcCCCEEEEEEcC---CCeEEEEEEchh
Confidence 0011257777775 566654321 110 011234468999 89988766322 234555555443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-09 Score=112.96 Aligned_cols=281 Identities=10% Similarity=-0.044 Sum_probs=149.1
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC--Cc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP--DI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~--~~ 83 (751)
.|+++|+.+ ++... .++.+... .+++||||++|+++...............|.++|+++.+...-.... ..
T Consensus 48 ~v~v~D~~t----~~~~~--~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGS----GSILG--HVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCC----CeEEE--EecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 568888887 77653 24455434 89999999999886531111111123467889999876643321111 00
Q ss_pred cc-cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 84 CL-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 84 ~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
.. ......++|||||++|++..... ...|.++
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~-----------------------------------------------~~~v~vi 153 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAA-----------------------------------------------GPAVGLV 153 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCC-----------------------------------------------CCeEEEE
Confidence 00 00124679999999999874310 0357777
Q ss_pred cCCC-Cce-e-cCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCC-CCCCCCcc
Q 004475 163 SLDG-TAK-D-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPP-AEDIPVCY 237 (751)
Q Consensus 163 ~~~G-~~~-~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~-~~~~~~~~ 237 (751)
| .. +.. . +.-+.. +.+.|+|++.++.... ...+..++. +++.. .....+. ....|
T Consensus 154 D-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~------------dg~~~~vd~-~g~~~~~~~~~~~~~~~~p--- 213 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCA------------QGGLAKTDH-AGGAAGAGLVGAMLTAAQN--- 213 (373)
T ss_pred E-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcC------------CCCEEEEEC-CCcEEEEEeccccccCCcc---
Confidence 7 44 332 2 221121 3445666655544222 223455555 33222 1110000 00000
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------eceeEE-E
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------LDLRFS-V 303 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~~~~~~-~ 303 (751)
-.....+++++.. +++.+ ..+.++++++. +...+.+.. ...... +
T Consensus 214 -----~~~~~~~~~~~~~-~~~~~------------~~~~v~vid~~---~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 214 -----LLTQPAQANKSGR-IVWPV------------YSGKILQADIS---AAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred -----eeecceeEecCCE-EEEEc------------CCceEEEEecc---CCcceEeeeeeecCCcccccceecCceEeE
Confidence 0012467888877 55543 22478888874 222111111 122233 5
Q ss_pred EEecCCceEEEeeeec------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcc
Q 004475 304 SWCDDSLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 377 (751)
Q Consensus 304 ~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~ 377 (751)
.++|||+.|+...... ....+|+++|+.+. .....+.... . .+. ++|||||+.++|....
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~-~-p~~------i~~s~Dg~~~l~v~~~----- 338 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGH-D-VDA------ISVAQDGGPDLYALSA----- 338 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECCC-C-cCe------EEECCCCCeEEEEEcC-----
Confidence 7899999887755321 12358999999885 1112232111 1 111 8899999966666621
Q ss_pred eEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 378 IYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
....|.++|+++++....
T Consensus 339 --------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 --------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred --------------CCCeEEEEECCCCCEEee
Confidence 124799999999887544
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=124.85 Aligned_cols=200 Identities=17% Similarity=0.088 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
..|.||++||.+... .+. .+.........+|.|+. ++.+|+|.+...........+++.+
T Consensus 66 ~~~~lvllhG~~~~~---------~~~-----~~~~~~~~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~a~~~~~--- 125 (300)
T 1kez_A 66 GEVTVICCAGTAAIS---------GPH-----EFTRLAGALRGIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQAD--- 125 (300)
T ss_dssp CSSEEEECCCSSTTC---------STT-----TTHHHHHHTSSSCCBCC---CCCTTSSTTCCBCSSHHHHHHHHHH---
T ss_pred CCCeEEEECCCcccC---------cHH-----HHHHHHHhcCCCceEEE---ecCCCCCCCCCCCCCHHHHHHHHHH---
Confidence 368999999964110 001 11222222345799988 5667777765444344555555443
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCCCCCCcc---------C-ccccc--ccc--h
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYNKTLTPF---------G-FQTEF--RTL--W 653 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d~~~~~~---------~-~~~~~--~~~--~ 653 (751)
.+.+. .+..+++++||||||.+|+.++.++| ++++++|++++......... . +.... ... .
T Consensus 126 ~l~~~--~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (300)
T 1kez_A 126 AVIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRL 203 (300)
T ss_dssp HHHHH--CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHH
T ss_pred HHHHh--cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHH
Confidence 33332 23468999999999999999999987 48999999888643211000 0 00000 000 0
Q ss_pred hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCCccccHHHHHHHH
Q 004475 654 EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWET 732 (751)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 732 (751)
.....+..........++++|+|+++|+ |..++ +.. .. +.. ....++++++++ +|.....+....+...+
T Consensus 204 ~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~--~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i 274 (300)
T 1kez_A 204 TALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGP--WPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHI 274 (300)
T ss_dssp HHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSC--CCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCC--Ccc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHH
Confidence 0001111111111246789999999995 55655 332 11 222 223578999999 89886446778889999
Q ss_pred HHHHHHHhc
Q 004475 733 DRWLQKYCL 741 (751)
Q Consensus 733 ~~fl~~~l~ 741 (751)
.+||.+...
T Consensus 275 ~~fl~~~~~ 283 (300)
T 1kez_A 275 DAWLGGGNS 283 (300)
T ss_dssp HHHHTCC--
T ss_pred HHHHHhccC
Confidence 999976543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=126.03 Aligned_cols=216 Identities=10% Similarity=0.117 Sum_probs=129.6
Q ss_pred cceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC----eeecc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLF 78 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~----~~~lt 78 (751)
...|.+|++.+ +..+.+..+.. ...+...+|||||++|+..+ ....|.++++.+++ ...+.
T Consensus 32 d~~i~iw~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s----------~d~~v~vwd~~~~~~~~~~~~~~ 97 (377)
T 3dwl_C 32 TNQVELYEQDG----NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS----------QDRNAYVYEKRPDGTWKQTLVLL 97 (377)
T ss_dssp SSCBCEEEEET----TEEEECCCBCCCSSCEEEEEECTTTCCEEEEE----------TTSSEEEC------CCCCEEECC
T ss_pred CCEEEEEEccC----CceEEEEEEecCCceEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCCceeeeeEec
Confidence 45789999987 63233322222 33688999999999998864 23567777777766 22232
Q ss_pred CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
.... .+..++|+|||+.|+..+.+ ..
T Consensus 98 ~~~~-----~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~ 123 (377)
T 3dwl_C 98 RLNR-----AATFVRWSPNEDKFAVGSGA-------------------------------------------------RV 123 (377)
T ss_dssp CCSS-----CEEEEECCTTSSCCEEEESS-------------------------------------------------SC
T ss_pred ccCC-----ceEEEEECCCCCEEEEEecC-------------------------------------------------Ce
Confidence 2222 47789999999999887542 35
Q ss_pred EEEEcC-CCC----ceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc-CCCC
Q 004475 159 LVLGSL-DGT----AKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPA 230 (751)
Q Consensus 159 l~~~~~-~G~----~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~ 230 (751)
|.++++ +++ .+.+.. + ..+..++|+|||++|+....+ ..+.+||+..+....-.. .+..
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~ 190 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWG 190 (377)
T ss_dssp EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSC
T ss_pred EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCccccccc
Confidence 677777 443 455654 4 778899999999998876543 357888886432111000 0000
Q ss_pred C----CC-CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC----ceEeEeeceeE
Q 004475 231 E----DI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK----PEILHKLDLRF 301 (751)
Q Consensus 231 ~----~~-~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~l~~~~~~~ 301 (751)
. .. ...+ .....+..++|+|||+. |+..+ ..+.|.++++.. +.. ...+......+
T Consensus 191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~------------~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~v 254 (377)
T 3dwl_C 191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAG------------HDSSVTIAYPSA--PEQPPRALITVKLSQLPL 254 (377)
T ss_dssp SCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEE------------TTTEEC-CEECS--TTSCEEECCCEECSSSCE
T ss_pred cccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEe------------CCCcEEEEECCC--CCCcceeeEeecCCCCce
Confidence 0 00 0111 23344678999999998 66654 235788888752 222 34445555667
Q ss_pred E-EEEecCCceEEEee
Q 004475 302 S-VSWCDDSLALVNET 316 (751)
Q Consensus 302 ~-~~~spdg~~l~~~~ 316 (751)
. +.|+|||+.|+...
T Consensus 255 ~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 255 RSLLWANESAIVAAGY 270 (377)
T ss_dssp EEEEEEETTEEEEEES
T ss_pred EEEEEcCCCCEEEEEc
Confidence 7 99999999887654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-11 Score=123.39 Aligned_cols=260 Identities=11% Similarity=0.096 Sum_probs=150.7
Q ss_pred eeEEeecCCCCCCCCcc-cccCCC---CcccccceeecCC----CCeEEEEEeecccccccCCceeEEEEEcCCCCeeec
Q 004475 6 GIGIHRLLPDDSLGPEK-EVHGYP---DGAKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~l~~~~---~~~~~~~p~~SPD----G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l 77 (751)
.|.+|++.+ ++.. .+.... ....+...+|||| |+.|+.. ...+.|.++++.+++....
T Consensus 45 ~v~vw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----------~~dg~i~v~d~~~~~~~~~ 110 (366)
T 3k26_A 45 RVTLYECHS----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA----------GSRGIIRIINPITMQCIKH 110 (366)
T ss_dssp EEEEEEECG----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE----------ETTCEEEEECTTTCCEEEE
T ss_pred EEEEEEcCC----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe----------cCCCEEEEEEchhceEeee
Confidence 689999986 5443 332111 2235788999999 5567764 3346899999988875544
Q ss_pred cCCCCccccceeeeeEEec-CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhee
Q 004475 78 FESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (751)
...... .+..++|+| +++.|+..+.+
T Consensus 111 ~~~~~~----~i~~~~~~~~~~~~l~s~~~d------------------------------------------------- 137 (366)
T 3k26_A 111 YVGHGN----AINELKFHPRDPNLLLSVSKD------------------------------------------------- 137 (366)
T ss_dssp EESCCS----CEEEEEECSSCTTEEEEEETT-------------------------------------------------
T ss_pred ecCCCC----cEEEEEECCCCCCEEEEEeCC-------------------------------------------------
Confidence 332221 478899999 89888877432
Q ss_pred eEEEEEcC-CCCc-eec---CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccC---
Q 004475 157 AQLVLGSL-DGTA-KDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL--- 227 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--- 227 (751)
..|.++|+ +++. ..+ ..+ ..+..++|+|||++|+....+ ..+.+||+.+++.......
T Consensus 138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHHHHHHHHHHHT
T ss_pred CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCccccccceeEE
Confidence 46778888 5633 333 234 778899999999998876543 3588999987643211110
Q ss_pred --CCCCC---------CC--CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCC------
Q 004475 228 --PPAED---------IP--VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG------ 288 (751)
Q Consensus 228 --~~~~~---------~~--~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 288 (751)
+.... .+ .........+..+.|+ |+. ++... ..+.|.++++.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~~~------------~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL-ILSKS------------CENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE-EEEEC------------SSSEEEEEEESSTTCCGGGCC
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE-EEEEe------------cCCEEEEEeCCCccccccccc
Confidence 00000 00 0011133446688888 554 44432 234677777641110
Q ss_pred ---CCceEeE---eeceeEE-EEEecC--CceEEEeeeecccceeEEEecCCCCCCcceee--eecc--cccccCCCCCC
Q 004475 289 ---EKPEILH---KLDLRFS-VSWCDD--SLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRV--FENVYSDPGSP 355 (751)
Q Consensus 289 ---~~~~~l~---~~~~~~~-~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~--~~~~~~~~~~~ 355 (751)
.....+. .....+. +.|+|| |+.|+.... ...|.+.++.++......+ .... ...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~----- 340 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ----VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQ----- 340 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT----TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEE-----
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec----CCcEEEEECCCCCCccccceEEcccccCCceEE-----
Confidence 0111222 2233445 789999 998887652 2456667776642111111 1111 122222
Q ss_pred CeeeCCCCCEEEEee
Q 004475 356 MMTRTSTGTNVIAKI 370 (751)
Q Consensus 356 ~~~~spDG~~l~~~~ 370 (751)
++|+|||+.|+..+
T Consensus 341 -~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 341 -TSFSRDSSILIAVC 354 (366)
T ss_dssp -EEECTTSSEEEEEE
T ss_pred -EEeCCCCCeEEEEe
Confidence 78999999998877
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-10 Score=122.78 Aligned_cols=126 Identities=8% Similarity=0.097 Sum_probs=72.4
Q ss_pred ceEEeeeeCCCC-ceEEEEEecCCcccccccCCCceeEEEEeCCCcee-----eeeccCCCCCCCCCccCCccCCCceee
Q 004475 175 AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-----RELCDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 175 ~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
..+..++|+||| +.|+....+ ..|.+||+.+++. ..+...... .....+......+..++
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFFSEIISSISDVK 292 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEEEEE
T ss_pred cceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCc-cccccccccCceEEEEE
Confidence 668899999999 777665433 3688999987653 222211110 00000001112467899
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---------------eEE-EEEecCCceE
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---------------RFS-VSWCDDSLAL 312 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---------------~~~-~~~spdg~~l 312 (751)
|+|||+. |+..+ . +.|.++++. ..+.....+..... ... +.|+|||+.|
T Consensus 293 ~s~~g~~-l~~~~------------~-~~v~iwd~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l 357 (447)
T 3dw8_B 293 FSHSGRY-MMTRD------------Y-LSVKVWDLN-MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357 (447)
T ss_dssp ECTTSSE-EEEEE------------S-SEEEEEETT-CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred ECCCCCE-EEEee------------C-CeEEEEeCC-CCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence 9999998 55543 2 578888874 11222333332221 022 6899999998
Q ss_pred EEeeeecccceeEEEecCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+..+. ...|.+.++.++
T Consensus 358 ~s~s~----dg~v~iwd~~~~ 374 (447)
T 3dw8_B 358 MTGSY----NNFFRMFDRNTK 374 (447)
T ss_dssp EEECS----TTEEEEEETTTC
T ss_pred EEecc----CCEEEEEEcCCC
Confidence 66552 346777777664
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-10 Score=118.07 Aligned_cols=243 Identities=9% Similarity=0.037 Sum_probs=142.7
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC-C
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-G 166 (751)
.+..++|+|||++|+....+ ..|.++++. +
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-------------------------------------------------g~i~iw~~~~~ 43 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-------------------------------------------------KTIKIFEVEGE 43 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEECC-------------------------------------------------CcEEEEecCCC
Confidence 47788999999999887432 345555552 2
Q ss_pred ---CceecCCC-ceEEeeeeCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 167 ---TAKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 167 ---~~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
....+..+ ..+..++|+|+ +++|+....+ ..+.+||+.+++...+.... ..
T Consensus 44 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~----------~~ 100 (379)
T 3jrp_A 44 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------------GKVLIWKEENGRWSQIAVHA----------VH 100 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------------SCEEEEEEETTEEEEEEEEC----------CC
T ss_pred cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-------------CEEEEEEcCCCceeEeeeec----------CC
Confidence 23344445 77889999988 8888776543 35889999877532221111 11
Q ss_pred cCCCceeeeecC--CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec----------
Q 004475 241 REGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD---------- 307 (751)
Q Consensus 241 ~~~~~~~~~spd--G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp---------- 307 (751)
...+..++|+|+ |+. ++... ..+.|.++++..........+......+. +.|+|
T Consensus 101 ~~~v~~~~~~~~~~~~~-l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPL-LLVAS------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp SSCEEEEEECCGGGCSE-EEEEE------------TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred CcceEEEEeCCCCCCCE-EEEec------------CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence 234668999999 776 55543 23578888885221122333444556677 99999
Q ss_pred ---CCceEEEeeeecccceeEEEecCCCCCCcceee--eecccccccCCCCCCCeeeCCC---CCEEEEeeeecCCcceE
Q 004475 308 ---DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTST---GTNVIAKIKKENDEQIY 379 (751)
Q Consensus 308 ---dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spD---G~~l~~~~~~~~~~~~~ 379 (751)
|++.|+.... . ..|.++++.++......+ .......+.. ++|+|| |+.|+..+.+
T Consensus 168 ~~~~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~------~~~sp~~~~~~~l~s~~~d------- 230 (379)
T 3jrp_A 168 GTKESRKFVTGGA--D--NLVKIWKYNSDAQTYVLESTLEGHSDWVRD------VAWSPTVLLRSYLASVSQD------- 230 (379)
T ss_dssp --CTTCEEEEEET--T--SCEEEEEEETTTTEEEEEEEECCCSSCEEE------EEECCCCSSSEEEEEEETT-------
T ss_pred CCCCCCEEEEEeC--C--CeEEEEEecCCCcceeeEEEEecccCcEeE------EEECCCCCCCCeEEEEeCC-------
Confidence 6888877662 2 245555554431111111 1111222222 889999 7888777632
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCce---eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEE
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSK---ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 456 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~ 456 (751)
..|.+||+.+++. ..+...... ......++|+|||+.|+.... -+.++++
T Consensus 231 --------------g~i~iwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~g~~l~~~~~----dg~i~iw 283 (379)
T 3jrp_A 231 --------------RTCIIWTQDNEQGPWKKTLLKEEKF---------PDVLWRASWSLSGNVLALSGG----DNKVTLW 283 (379)
T ss_dssp --------------SCEEEEEESSTTSCCEEEESSSSCC---------SSCEEEEEECSSSCCEEEEES----SSSEEEE
T ss_pred --------------CEEEEEeCCCCCccceeeeeccccC---------CCcEEEEEEcCCCCEEEEecC----CCcEEEE
Confidence 2688889887642 222221100 011123589999998876643 2346666
Q ss_pred EcC
Q 004475 457 SWP 459 (751)
Q Consensus 457 ~~~ 459 (751)
++.
T Consensus 284 ~~~ 286 (379)
T 3jrp_A 284 KEN 286 (379)
T ss_dssp EEE
T ss_pred eCC
Confidence 655
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-10 Score=121.76 Aligned_cols=206 Identities=12% Similarity=0.102 Sum_probs=119.0
Q ss_pred CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC--------CeeeccCCCCccccceeeeeEEecCCc-
Q 004475 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--------EAKPLFESPDICLNAVFGSFVWVNNST- 99 (751)
Q Consensus 29 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g--------~~~~lt~~~~~~~~~~~~~~~wspDg~- 99 (751)
....+...+|+|++..++++. ...+.|+++++... +.+.+.....+ ...+..++|+|+++
T Consensus 127 h~~~v~~l~~~p~~~~~lat~---------~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATK---------TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--QKEGYGLSWNPNLNG 195 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEE---------CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--SSCCCCEEECTTSTT
T ss_pred CCCcEEEEEECCCCCcEEEEE---------CCCCcEEEEECCCcccccCccccCCCcEEecCC--CCCeEEEEeCCCCCC
Confidence 333688999999855554443 23357888887652 11121111111 11356889999998
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-C-------cee
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T-------AKD 170 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~-------~~~ 170 (751)
.|+....+ +.|.++++ ++ . ...
T Consensus 196 ~l~s~~~d-------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 196 YLLSASDD-------------------------------------------------HTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp EEEEECTT-------------------------------------------------SCEEEEETTSCCBGGGEEECSEE
T ss_pred eEEEEeCC-------------------------------------------------CeEEEEeCCCCCCCCceecccee
Confidence 66655322 35666666 32 1 223
Q ss_pred cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceee
Q 004475 171 FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSIS 248 (751)
Q Consensus 171 lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (751)
+..+ ..+..++|+|++..++++... ...|.+||+.++.. +.+. .+......++.++
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~------------dg~i~i~d~~~~~~~~~~~----------~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVAD------------DQKLMIWDTRNNNTSKPSH----------TVDAHTAEVNCLS 284 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCSCSSSCSE----------EEECCSSCEEEEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeC------------CCeEEEEECCCCCCCccee----------EeecCCCCeEEEE
Confidence 3334 678899999966555554433 34689999986521 1110 0112223467899
Q ss_pred eecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 249 ~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
|+|+++++++..+ ..+.|.++++.. .......+......+. +.|+|+++.++++... .+.-.||.
T Consensus 285 ~~p~~~~~l~tg~------------~dg~v~vwd~~~-~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~-d~~i~iwd 350 (430)
T 2xyi_A 285 FNPYSEFILATGS------------ADKTVALWDLRN-LKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWD 350 (430)
T ss_dssp ECSSCTTEEEEEE------------TTSEEEEEETTC-TTSCSEEEECCSSCEEEEEECSSCTTEEEEEET-TSCCEEEE
T ss_pred eCCCCCCEEEEEe------------CCCeEEEEeCCC-CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC-CCcEEEEe
Confidence 9999998344433 235788888851 1223445555566777 9999999875554422 23345555
Q ss_pred ecC
Q 004475 328 VCP 330 (751)
Q Consensus 328 ~~~ 330 (751)
+..
T Consensus 351 ~~~ 353 (430)
T 2xyi_A 351 LSK 353 (430)
T ss_dssp GGG
T ss_pred CCC
Confidence 443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-10 Score=115.39 Aligned_cols=245 Identities=5% Similarity=-0.024 Sum_probs=152.6
Q ss_pred cceeEEeecCCCCCCCC----cccccCCCCcccccceeecCCCC-eEEEEEeecccccccCCceeEEEEEc-CCCCeeec
Q 004475 4 FTGIGIHRLLPDDSLGP----EKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPL 77 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~----~~~l~~~~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~~~~~l~i~~~-~~g~~~~l 77 (751)
...|++|++.+ ++ .+.+. .....+...+|+|||+ .|+... ..+.|+++++ .+++...+
T Consensus 32 d~~v~iw~~~~----~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~ 95 (342)
T 1yfq_A 32 DGSLTVYKFDI----QAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT----------VQGEILKVDLIGSPSFQAL 95 (342)
T ss_dssp TSEEEEEEEET----TTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE----------TTSCEEEECSSSSSSEEEC
T ss_pred CCeEEEEEeCC----CCccccceeee--ecCCceEEEEECCCCCcEEEEEc----------CCCeEEEEEeccCCceEec
Confidence 35789999988 66 44444 2333688999999999 887753 3468889999 88888777
Q ss_pred cC--CCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe
Q 004475 78 FE--SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT 155 (751)
Q Consensus 78 t~--~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (751)
.. ... .+..++|+| ++.|+..+.+
T Consensus 96 ~~~~~~~-----~v~~l~~~~-~~~l~s~~~d------------------------------------------------ 121 (342)
T 1yfq_A 96 TNNEANL-----GICRICKYG-DDKLIAASWD------------------------------------------------ 121 (342)
T ss_dssp BSCCCCS-----CEEEEEEET-TTEEEEEETT------------------------------------------------
T ss_pred cccCCCC-----ceEEEEeCC-CCEEEEEcCC------------------------------------------------
Confidence 54 332 477899999 8888877432
Q ss_pred eeEEEEEcC-C---------CC-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceee-
Q 004475 156 TAQLVLGSL-D---------GT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVR- 222 (751)
Q Consensus 156 ~~~l~~~~~-~---------G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~- 222 (751)
..|.++++ + ++ ...+.....+..++|+|++ |++... ...+.+||+.+ ....
T Consensus 122 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~-------------d~~i~i~d~~~~~~~~~ 185 (342)
T 1yfq_A 122 -GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMN-------------NSQVQWFRLPLCEDDNG 185 (342)
T ss_dssp -SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEES-------------TTEEEEEESSCCTTCCC
T ss_pred -CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeC-------------CCeEEEEECCccccccc
Confidence 46777777 4 53 2233323778899999998 554432 23688999986 4321
Q ss_pred eeccCCCCCCCCCccCCccCCCceeeeec-CCCceEEEEEeccCCCCccccCcccceeeccCCCC--C--CCCceEeEee
Q 004475 223 ELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPA--E--GEKPEILHKL 297 (751)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~--~~~~~~l~~~ 297 (751)
..... .....+..+.|+| ||+. ++... ..+.+.+++++.. + ......+...
T Consensus 186 ~~~~~-----------~~~~~i~~i~~~~~~~~~-l~~~~------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 186 TIEES-----------GLKYQIRDVALLPKEQEG-YACSS------------IDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEC-----------SCSSCEEEEEECSGGGCE-EEEEE------------TTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred eeeec-----------CCCCceeEEEECCCCCCE-EEEEe------------cCCcEEEEEEcCCCcccccccceeeecc
Confidence 11111 1122356899999 9987 55543 2346677666421 0 1223333333
Q ss_pred ce---------eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-cccccCCCCCCCeeeCCCCCEE
Q 004475 298 DL---------RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNV 366 (751)
Q Consensus 298 ~~---------~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spDG~~l 366 (751)
.. .+. +.|+|||+.|+.... ...|.++++.++ ......... ...+.. ++ |||+.|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~--~~~~~~~~~h~~~v~~------~~--~~~~~l 307 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS----DGIISCWNLQTR--KKIKNFAKFNEDSVVK------IA--CSDNIL 307 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEET----TSCEEEEETTTT--EEEEECCCCSSSEEEE------EE--ECSSEE
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecC----CceEEEEcCccH--hHhhhhhcccCCCceE------ec--CCCCeE
Confidence 22 566 999999999886652 246777788764 222222211 222211 33 999999
Q ss_pred EEeeee
Q 004475 367 IAKIKK 372 (751)
Q Consensus 367 ~~~~~~ 372 (751)
+..+.+
T Consensus 308 ~s~s~D 313 (342)
T 1yfq_A 308 CLATSD 313 (342)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 988854
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-09 Score=108.87 Aligned_cols=281 Identities=14% Similarity=0.144 Sum_probs=160.8
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
....|||++ .||.. ....|+++|+++|+..++.....+. ..+..++|+|||++|+..+.+
T Consensus 29 ~~l~WS~~~-~lAvg-----------~D~tV~iWd~~tg~~~~~~~~~~~~--~~V~~v~~~~~~~~l~sgs~D------ 88 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-----------LDNSVYLWSASSGDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSS------ 88 (318)
T ss_dssp BCEEECTTS-EEEEE-----------ETTEEEEEETTTCCEEEEEECCSTT--CCEEEEEECTTSSEEEEEETT------
T ss_pred eEEEECCCC-EEEEE-----------eCCEEEEEECCCCCEEEEEEecCCC--CeEEEEEECCCCCEEEEEECC------
Confidence 447899997 67763 2367999999999876654332221 137789999999999887543
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCCceEEeeeeCCCCceEEE
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~i~~ 191 (751)
..|.++++ +|+ .+.+..+ ......++++++.|+.
T Consensus 89 -------------------------------------------g~v~iw~~~~~~~~~~~~~h-~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 89 -------------------------------------------AEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSYILSS 124 (318)
T ss_dssp -------------------------------------------SEEEEEETTTTEEEEEEECC-SSCEEEEEEETTEEEE
T ss_pred -------------------------------------------CcEEEeecCCceeEEEecCc-cceEEEeecCCCEEEE
Confidence 46777888 663 3333333 1122346677777665
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
.... ..+..++...... ..+..+ ...+..+.|+++|+. ++...
T Consensus 125 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-l~s~~-------- 169 (318)
T 4ggc_A 125 GSRS-------------GHIHHHDVRVAEHHVATLSGH-------------SQEVCGLRWAPDGRH-LASGG-------- 169 (318)
T ss_dssp EETT-------------SEEEEEETTSSSCEEEEEECC-------------SSCEEEEEECTTSSE-EEEEE--------
T ss_pred EecC-------------CceEeeecCCCceeEEEEcCc-------------cCceEEEEEcCCCCE-EEEEe--------
Confidence 4432 2345565554322 222111 122447799999997 55433
Q ss_pred cccCcccceeeccCCCCCCC--CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 270 VEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
..+.+.++++...... ...........+. ..++|++..++..... .....|.+.+.... ........ ..
T Consensus 170 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~--~~~~~~~~-~~ 241 (318)
T 4ggc_A 170 ----NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSG--ACLSAVDA-HS 241 (318)
T ss_dssp ----TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTC--CEEEEEEC-SS
T ss_pred ----cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecccc--cccccccc-ee
Confidence 2356777777421111 1122223344566 8899998887655422 22345555566553 11222111 11
Q ss_pred cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 426 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 426 (751)
.+.. ..|+|+++.++..+. .....|++||+.+++....+..... .+..
T Consensus 242 ~v~~------~~~~~~~~~~~~~sg-------------------~~d~~i~iwd~~~~~~~~~l~gH~~----~V~~--- 289 (318)
T 4ggc_A 242 QVCS------ILWSPHYKELISGHG-------------------FAQNQLVIWKYPTMAKVAELKGHTS----RVLS--- 289 (318)
T ss_dssp CEEE------EEEETTTTEEEEEEC-------------------TTTCCEEEEETTTCCEEEEECCCSS----CEEE---
T ss_pred eeee------eeecccccceEEEEE-------------------cCCCEEEEEECCCCcEEEEEcCCCC----CEEE---
Confidence 1111 679999999887661 1234789999998877554432211 1222
Q ss_pred CCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCC
Q 004475 427 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 461 (751)
Q Consensus 427 ~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g 461 (751)
++|||||+.|+-. ... +.|.++|+.+.
T Consensus 290 ----l~~spdg~~l~S~-s~D---~~v~iWd~~~~ 316 (318)
T 4ggc_A 290 ----LTMSPDGATVASA-AAD---ETLRLWRCFEL 316 (318)
T ss_dssp ----EEECTTSSCEEEE-ETT---TEEEEECCSCC
T ss_pred ----EEEcCCCCEEEEE-ecC---CeEEEEECCCC
Confidence 5899999977643 322 35777776543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-10 Score=115.49 Aligned_cols=206 Identities=9% Similarity=0.060 Sum_probs=115.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEec--CCcEEEEeecC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN--NSTLLIFTIPS 107 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~ 107 (751)
.+...+|||||++||... ..+.|.++++.++.. +.+.....+ ...+..++|+| |++.|+..+.+
T Consensus 13 ~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCS----------SDQHIKVFKLDKDTSNWELSDSWRAH--DSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CEEEEEECSSSSEEEEEE----------TTSEEEEEEECSSSCCEEEEEEEECC--SSCEEEEEECCGGGCSEEEEEETT
T ss_pred ceeEEEEcCCCCEEEEee----------CCCeEEEEECCCCCCcceecceeccC--CCcEEEEEEcCCCCCCEEEEEcCC
Confidence 588999999999998863 235677777765431 222111111 11477899999 69888877543
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC----------ceecCCC-c
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT----------AKDFGTP-A 175 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~----------~~~lt~~-~ 175 (751)
..|.++++ +++ ...+..+ .
T Consensus 81 -------------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 111 (351)
T 3f3f_A 81 -------------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKG 111 (351)
T ss_dssp -------------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEECCCSS
T ss_pred -------------------------------------------------CeEEEEecCCCcccccccCcceeeeecccCC
Confidence 34555565 331 2333444 6
Q ss_pred eEEeeeeCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC-CCCCCccCCccCCCceeeeecC
Q 004475 176 VYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA-EDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 176 ~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~spd 252 (751)
.+..++|+|+ |++|+....+ ..+.+||+.+++.......... .............+..+.|+|+
T Consensus 112 ~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 112 SLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred ceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 7889999999 9988876543 3688999876543211110000 0000001122334668999998
Q ss_pred ---CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe---EeeceeEE-EEEecCC----ceEEEeeeeccc
Q 004475 253 ---KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL---HKLDLRFS-VSWCDDS----LALVNETWYKTS 321 (751)
Q Consensus 253 ---G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l---~~~~~~~~-~~~spdg----~~l~~~~~~~~~ 321 (751)
++. ++... ..+.+...... .+....+ ......+. +.|+|++ +.|+... ..+
T Consensus 179 ~~~~~~-l~~~~------------~~~~~~~~~~~---~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg 240 (351)
T 3f3f_A 179 RFSPEK-LAVSA------------LEQAIIYQRGK---DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDG 240 (351)
T ss_dssp SSSCCE-EEEEE------------TTEEEEEEECT---TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTS
T ss_pred CCCCcE-EEEec------------CCCcEEEEccC---CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCC
Confidence 665 55443 11233333332 2232222 23445667 9999998 6666554 223
Q ss_pred ceeEEEec
Q 004475 322 QTRTWLVC 329 (751)
Q Consensus 322 ~~~l~~~~ 329 (751)
.-.+|.+.
T Consensus 241 ~i~iwd~~ 248 (351)
T 3f3f_A 241 RIRIFKIT 248 (351)
T ss_dssp CEEEEEEE
T ss_pred eEEEEeCC
Confidence 34455443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-10 Score=116.80 Aligned_cols=254 Identities=11% Similarity=0.027 Sum_probs=131.8
Q ss_pred cceeEEeecCCCCCCCCcccccCC--C-CcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC-----ee
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGY--P-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AK 75 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~--~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-----~~ 75 (751)
...|.+|++.+ +..+.+..+ . ....+...+|||||+.||..+ ....|.+++++.+. .+
T Consensus 33 D~~i~lw~~~~----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s----------~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 33 DRKIKLVSVKY----DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS----------FDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp SSCEEEEECSS----SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE----------TTSCEEEEEC-------CCCE
T ss_pred CCEEEEEEecC----CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe----------CCCcEEEEEcccCcCccccce
Confidence 34688999977 543332212 1 233688999999999998764 22455666654321 11
Q ss_pred eccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe
Q 004475 76 PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT 155 (751)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (751)
.+.....+ ...+..++|||||++|+..+.+
T Consensus 99 ~~~~~~~h--~~~V~~v~~sp~g~~las~s~D------------------------------------------------ 128 (330)
T 2hes_X 99 LLAIIEGH--ENEVKGVAWSNDGYYLATCSRD------------------------------------------------ 128 (330)
T ss_dssp EEEEEC------CEEEEEECTTSCEEEEEETT------------------------------------------------
T ss_pred eEEEEcCC--CCcEEEEEECCCCCEEEEEeCC------------------------------------------------
Confidence 11101111 1136789999999999887543
Q ss_pred eeEEEEEcC-C-CC----ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC
Q 004475 156 TAQLVLGSL-D-GT----AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (751)
Q Consensus 156 ~~~l~~~~~-~-G~----~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (751)
..|.++++ + ++ ...+..+ ..+..++|+|||+.|+..+.+ ..+.+|+..++..+.+...
T Consensus 129 -~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~- 193 (330)
T 2hes_X 129 -KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVL- 193 (330)
T ss_dssp -SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEE-
T ss_pred -CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEc-
Confidence 34555665 2 21 2234444 678899999999988876543 3577888765432222111
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCce-EEEEEeccCCCCccccCcccceeeccCCCCCCCCc---eE---eEe-ecee
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPST-LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EI---LHK-LDLR 300 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~---l~~-~~~~ 300 (751)
......+..+.|+|++... |+..+ ..+.|.++++........ .. +.. ....
T Consensus 194 ---------~~h~~~v~~~~~~~~~~~~~l~s~s------------~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 194 ---------NGHEGTVWSSDFDKTEGVFRLCSGS------------DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp ---------CCCSSCEEEEEECCSSSSCEEEEEE------------TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred ---------cCCCCcEEEEEecCCCCeeEEEEEe------------CCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 1112335688999994321 33322 224566666531100000 11 111 3345
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee---ecccc-cccCCCCCCCeeeCC--CCCEEEEee
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF---DRVFE-NVYSDPGSPMMTRTS--TGTNVIAKI 370 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~---~~~~~-~~~~~~~~~~~~~sp--DG~~l~~~~ 370 (751)
+. ++|++++ .|+... ..+.-.||. ..++ ..+.+. ..... .+.. ++|+| ||+.|+..+
T Consensus 253 v~~v~~s~~~-~l~s~~--~dg~v~iw~--~~~~--~~~~~~~~~~~h~~~~v~~------v~~~~~~~~~~las~s 316 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVG--ADGVLAVYE--EVDG--EWKVFAKRALCHGVYEINV------VKWLELNGKTILATGG 316 (330)
T ss_dssp EEEEEECTTS-CEEEEE--TTSCEEEEE--EETT--EEEEEEEESCTTTTSCEEE------EEEC-----CCEEEEE
T ss_pred eEEEEEcCCC-EEEEEe--CCCEEEEEE--cCCC--ceEEEeccccccccceEEE------EEEecCCCceEEEEec
Confidence 66 8999776 455444 223334554 3332 111111 11111 1222 77999 788888777
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=112.16 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=111.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee---ccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~---lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
.+....|||| .||..+ ....|.++++.+++.+. +..... ...+..++|+|||+.|+..+.+
T Consensus 16 ~v~~~~~s~~--~las~~----------~D~~i~lw~~~~~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~las~s~D- 79 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS----------TDRKIKLVSVKYDDFTLIDVLDETAH---KKAIRSVAWRPHTSLLAAGSFD- 79 (330)
T ss_dssp CEEEEEEETT--EEEEEE----------SSSCEEEEECSSSCCEEEEEECTTCC---CSCEEEEEECTTSSEEEEEETT-
T ss_pred ceeeeccCCC--EEEEEc----------CCCEEEEEEecCCCeEEEEEEecCCc---cCCEEEEEECCCCCEEEEEeCC-
Confidence 5778889998 666542 33567777877654322 211101 1147889999999998877543
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC--------CC-ceecCCC-ceEE
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--------GT-AKDFGTP-AVYT 178 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------G~-~~~lt~~-~~~~ 178 (751)
..|.++++. ++ ...+..+ ..+.
T Consensus 80 ------------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 80 ------------------------------------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp ------------------------------------------------SCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred ------------------------------------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 234444441 11 1223334 6788
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-Cce-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
.++|+|||++|+..+.+ ..+.+||+. ++. .+.+.. +......+..+.|+|||+.
T Consensus 112 ~v~~sp~g~~las~s~D-------------~~v~iwd~~~~~~~~~~~~~----------~~~h~~~v~~v~~~p~~~~- 167 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRD-------------KSVWIWETDESGEEYECISV----------LQEHSQDVKHVIWHPSEAL- 167 (330)
T ss_dssp EEEECTTSCEEEEEETT-------------SCEEEEECCTTCCCCEEEEE----------ECCCSSCEEEEEECSSSSE-
T ss_pred EEEECCCCCEEEEEeCC-------------CEEEEEeccCCCCCeEEEEE----------eccCCCceEEEEECCCCCE-
Confidence 99999999998876544 358899984 221 111111 1112234668999999987
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC--CceEEEeeeecccceeEEEec
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD--SLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd--g~~l~~~~~~~~~~~~l~~~~ 329 (751)
|+..+ ..+.|.+++....+......+......+. +.|+|+ +..|+..+ ....-.||.+.
T Consensus 168 l~s~s------------~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~ 229 (330)
T 2hes_X 168 LASSS------------YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYM 229 (330)
T ss_dssp EEEEE------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEE
T ss_pred EEEEc------------CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEec
Confidence 55543 23467777653100012223334455666 899999 55565544 23344666554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=116.43 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=129.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec--CCcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN--NSTLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~~ 109 (751)
.+...+|||||++||..+ ....|.++++.+++...+.....+ ...+..++|+| +|+.|+..+.+
T Consensus 15 ~V~~v~~s~~g~~lasgs----------~D~~v~lwd~~~~~~~~~~~l~gH--~~~V~~v~~~~~~~~~~l~s~s~D-- 80 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCS----------SDRSVKIFDVRNGGQILIADLRGH--EGPVWQVAWAHPMYGNILASCSYD-- 80 (316)
T ss_dssp CEEEEEECGGGCEEEEEE----------TTTEEEEEEEETTEEEEEEEEECC--SSCEEEEEECCGGGSSCEEEEETT--
T ss_pred eEEEeeEcCCCCEEEEEe----------CCCeEEEEEecCCCcEEEEEEcCC--CccEEEEEeCCCCCCCEEEEEECC--
Confidence 578899999999998864 235666667766643322111111 11477889986 48888877543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecCCC-ceEEeeeeCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt~~-~~~~~~~~Sp 184 (751)
..|.++|+ +|+. ..+..+ ..+..++|+|
T Consensus 81 -----------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p 113 (316)
T 3bg1_A 81 -----------------------------------------------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113 (316)
T ss_dssp -----------------------------------------------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECC
T ss_pred -----------------------------------------------CEEEEEECCCCcceEEEEccCCCCceEEEEECC
Confidence 35677777 5532 233334 6678999999
Q ss_pred C--CceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC--------
Q 004475 185 D--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK-------- 253 (751)
Q Consensus 185 D--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG-------- 253 (751)
| |+.|+..+.+ ..+.+|+..++.. ..... +......+..+.|+|++
T Consensus 114 ~~~g~~lasgs~D-------------~~i~lwd~~~~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 114 HDYGLILACGSSD-------------GAISLLTYTGEGQWEVKKI----------NNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp TTTCSCEEEECSS-------------SCEEEEEECSSSCEEECCB----------TTSSSSCBCCCEECCCCCC------
T ss_pred CCCCcEEEEEcCC-------------CCEEEEecCCCCCcceeee----------eccccCCcceEEEccccCCcccccc
Confidence 8 7777765433 3578888875421 11111 11112235578999984
Q ss_pred ---------CceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEecCC----ceEEEee
Q 004475 254 ---------PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWCDDS----LALVNET 316 (751)
Q Consensus 254 ---------~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~spdg----~~l~~~~ 316 (751)
+. ++.. ...+.|.++++.. +.. ...+......+. ++|+|++ +.|+..+
T Consensus 171 ~~~~~~~~~~~-l~sg------------s~D~~v~lWd~~~--~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 171 PSGQKPNYIKR-FASG------------GCDNLIKLWKEEE--DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CCSCCCCCCCB-EECC------------BTTSBCCEEEECT--TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred ccccCccccce-EEEe------------cCCCeEEEEEeCC--CCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 22 2221 1234677777641 111 122333445567 9999997 6666554
Q ss_pred eecccceeEEEecCCCC---CCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 317 WYKTSQTRTWLVCPGSK---DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
. . ..|.+.++.+. ....+.+... ...++. ++|+|||+.|+..+.
T Consensus 236 ~--D--~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~------v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 236 Q--D--GRVFIWTCDDASSNTWSPKLLHKF-NDVVWH------VSWSITANILAVSGG 282 (316)
T ss_dssp T--T--CEEEEEECSSTTCCCCBCCEEEEC-SSCEEE------EEECTTTCCEEEEES
T ss_pred C--C--CeEEEEEccCccccchhhhhhhcC-CCcEEE------EEEcCCCCEEEEEcC
Confidence 2 2 24444444431 0111223211 222333 889999999988773
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-11 Score=116.75 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=112.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||+|. +...|..+ .. +..+|.|++++ .+|++.+...........+++.+.++.
T Consensus 21 ~~~lv~lhg~~~-----------~~~~~~~~----~~--l~~~~~v~~~d---~~G~~~~~~~~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 21 RKTLFMLPDGGG-----------SAFSYASL----PR--LKSDTAVVGLN---CPYARDPENMNCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SEEEEEECCTTC-----------CGGGGTTS----CC--CSSSEEEEEEE---CTTTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCC-----------CHHHHHHH----Hh--cCCCCEEEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 588999999752 11223322 12 36789999944 445544433333455666666666654
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHH---hCCCceeEEEEccCCCCCCCCcc--------------Cc-------cc
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLA---HAPHLFCCGIARSGSYNKTLTPF--------------GF-------QT 647 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~~~~d~~~~~~--------------~~-------~~ 647 (751)
+. ...++.++||||||.+|+.++. ..|++++++|++++......... +. ..
T Consensus 81 ~~-----~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
T 3ils_A 81 RQ-----PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGS 155 (265)
T ss_dssp HC-----SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSC
T ss_pred hC-----CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCC
Confidence 42 1257999999999999999998 67788999998876532111110 00 00
Q ss_pred ccccchhhH---HHHHhcCc--ccccCCCCCCEE-EEEcCC---CCCCCC------------ChHHHHHHHHHHHhCCCc
Q 004475 648 EFRTLWEAT---NVYIEMSP--ITHANKIKKPIL-IIHGEV---DDKVGL------------FPMQAERFFDALKGHGAL 706 (751)
Q Consensus 648 ~~~~~~~~~---~~~~~~~~--~~~~~~~~~P~l-i~~G~~---D~~vp~------------~~~~~~~~~~~l~~~~~~ 706 (751)
.....+-.+ ..+..... .....++++|++ +++|++ |..++. +........+.+ .+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~ 233 (265)
T 3ils_A 156 TEPPSYLIPHFTAVVDVMLDYKLAPLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIM--PGAS 233 (265)
T ss_dssp SCCCTTHHHHHHHHHHHTTTCCCCCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHS--TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhC--Cccc
Confidence 000001000 11111111 112346889987 999999 987720 022222222211 1147
Q ss_pred EEEEEeCCCCCcCCc-cccHHHHHHHHHHHH
Q 004475 707 SRLVLLPFEHHVYAA-RENVMHVIWETDRWL 736 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~-~~~~~~~~~~~~~fl 736 (751)
++++++++++|.+.. .+....+.+.+.+||
T Consensus 234 ~~~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 234 FDIVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred eeEEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 899999999998753 345566666677665
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-09 Score=108.34 Aligned_cols=251 Identities=9% Similarity=0.084 Sum_probs=137.6
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG- 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G- 166 (751)
.+..++|||||++|+..+.+ ..|.++++.+
T Consensus 11 ~V~~~~~s~~g~~las~s~D-------------------------------------------------~~v~iw~~~~~ 41 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSD-------------------------------------------------KTIKIFEVEGE 41 (297)
T ss_dssp CEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEEBCSS
T ss_pred ceEEEEECCCCCEEEEEeCC-------------------------------------------------CEEEEEecCCC
Confidence 36788999999999887543 3455666632
Q ss_pred ---CceecCCC-ceEEeeeeCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 167 ---TAKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 167 ---~~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
....+..+ ..+..++|+|+ |+.|+..+.+ ..+.+||+.+++...+... ...
T Consensus 42 ~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-------------~~v~iWd~~~~~~~~~~~~----------~~h 98 (297)
T 2pm7_B 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------------GKVMIWKEENGRWSQIAVH----------AVH 98 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-------------TEEEEEEBSSSCBCCCEEE----------CCC
T ss_pred CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-------------CEEEEEEcCCCceEEEEEe----------ecC
Confidence 23455555 77889999975 7877765543 3688999986643222111 112
Q ss_pred cCCCceeeeecC--CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC---------
Q 004475 241 REGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD--------- 308 (751)
Q Consensus 241 ~~~~~~~~~spd--G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd--------- 308 (751)
...+..++|+|+ |+. |+..+ ..+.+.++++..........+......+. +.|+|+
T Consensus 99 ~~~v~~v~~~p~~~g~~-l~s~s------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPM-LLVAS------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp SSCEEEEEECCGGGCSE-EEEEE------------TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred CCceeEEEeCcCCCCcE-EEEEE------------CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 234668999998 665 45443 23577788774211111333444555666 899997
Q ss_pred ----CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC---CEEEEeeeecCCcceEEE
Q 004475 309 ----SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG---TNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 309 ----g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG---~~l~~~~~~~~~~~~~~~ 381 (751)
++.|+.++ .+..-.||.++..................+.. ++|+||+ ++|+..+.+
T Consensus 166 ~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~------v~~sp~~~~~~~las~s~D--------- 228 (297)
T 2pm7_B 166 GTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD------VAWSPTVLLRSYMASVSQD--------- 228 (297)
T ss_dssp ----CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEE------EEECCCCSSSEEEEEEETT---------
T ss_pred CCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEE------EEECCCCCCceEEEEEECC---------
Confidence 45666554 22334555544322100011111222222333 8899996 667666632
Q ss_pred EccCCCCCCCCCceeEEEecCCCce---eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSK---ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
..|.+||+.++.. ..+..... . ......++|||||+.|+..... ..+.+++.
T Consensus 229 ------------~~v~iWd~~~~~~~~~~~~~~~~~--~-------~~~v~~~~~s~~g~~las~~~D----~~v~lw~~ 283 (297)
T 2pm7_B 229 ------------RTCIIWTQDNEQGPWKKTLLKEEK--F-------PDVLWRASWSLSGNVLALSGGD----NKVTLWKE 283 (297)
T ss_dssp ------------SCEEEEEESSTTSCCEEEESSSSC--C-------SSCEEEEEECSSSCCEEEEETT----SCEEEEEE
T ss_pred ------------CcEEEEEeCCCCCccceeeeeccc--C-------CCcEEEEEECCCCCEEEEEcCC----CcEEEEEE
Confidence 2678888865431 12221110 0 0111236899999988765422 23555554
Q ss_pred C-CCceeE
Q 004475 459 P-LKKSSQ 465 (751)
Q Consensus 459 ~-~g~~~~ 465 (751)
. .|+...
T Consensus 284 ~~~g~w~~ 291 (297)
T 2pm7_B 284 NLEGKWEP 291 (297)
T ss_dssp CTTSCEEE
T ss_pred CCCCcEEe
Confidence 3 244443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-09 Score=114.91 Aligned_cols=274 Identities=14% Similarity=0.098 Sum_probs=158.2
Q ss_pred ceeEEeecCCCCCCCCcccccCC------------CCcccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGY------------PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~------------~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~ 71 (751)
..|.+|++.+ ++....... .....+...+|+| +++.|+.. ...+.|.++++.+
T Consensus 66 g~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~iwd~~~ 131 (408)
T 4a11_B 66 GVIVLYDLEN----SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS----------SFDKTLKVWDTNT 131 (408)
T ss_dssp SCEEEEECCC----CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE----------ETTSEEEEEETTT
T ss_pred CeEEEEECCC----CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE----------eCCCeEEEeeCCC
Confidence 4689999988 655443210 1233688999999 66677664 2346888899988
Q ss_pred CCeeeccCCCCccccceeeeeEEecCC---cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccch
Q 004475 72 GEAKPLFESPDICLNAVFGSFVWVNNS---TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (751)
Q Consensus 72 g~~~~lt~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (751)
++......... .+..+.|+|++ +.|+....+
T Consensus 132 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 165 (408)
T 4a11_B 132 LQTADVFNFEE-----TVYSHHMSPVSTKHCLVAVGTRG----------------------------------------- 165 (408)
T ss_dssp TEEEEEEECSS-----CEEEEEECSSCSSCCEEEEEESS-----------------------------------------
T ss_pred CccceeccCCC-----ceeeeEeecCCCCCcEEEEEcCC-----------------------------------------
Confidence 87666544333 35677888754 467766332
Q ss_pred hhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce--eee
Q 004475 149 SLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRE 223 (751)
Q Consensus 149 ~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~ 223 (751)
..|.++++ ++ ....+..+ ..+..++|+|||++++++... ...+.+||+..+. ...
T Consensus 166 --------~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~------------dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 166 --------PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA------------DSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp --------SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET------------TSCEEEEETTCSSCCSEE
T ss_pred --------CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC------------CCcEEEEECCCCCccccc
Confidence 46778888 55 34555545 778899999999986655443 3468899997653 222
Q ss_pred eccCCCCC--CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-----
Q 004475 224 LCDLPPAE--DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK----- 296 (751)
Q Consensus 224 l~~~~~~~--~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~----- 296 (751)
+....... .....+......+..++|+|||+. |+... ..+.|.++++.. +........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~------------~dg~i~vwd~~~--~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVG------------TDNRMRLWNSSN--GENTLVNYGKVCNN 290 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEE------------TTSCEEEEETTT--CCBCCCCCCCCCCC
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCE-EEEec------------CCCeEEEEECCC--Cccceecccccccc
Confidence 21111110 011112233445778999999998 55543 235688888752 111111110
Q ss_pred eceeEEEEE-ecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCC
Q 004475 297 LDLRFSVSW-CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 375 (751)
Q Consensus 297 ~~~~~~~~~-spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~ 375 (751)
........+ ...+..+++... ...|.++++.++ ............+.. ++|+|||+.|+..+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~~--~~~~~~~~~~~~v~~------~~~s~~~~~l~s~~~d--- 355 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPY----GSTIAVYTVYSG--EQITMLKGHYKTVDC------CVFQSNFQELYSGSRD--- 355 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEE----TTEEEEEETTTC--CEEEEECCCSSCEEE------EEEETTTTEEEEEETT---
T ss_pred ccccceeEEecCCCceEEEEec----CCEEEEEECcCC--cceeeeccCCCeEEE------EEEcCCCCEEEEECCC---
Confidence 011111222 233444555442 246777887774 223322222222222 7899999998887732
Q ss_pred cceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 376 EQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
..|.+|++.+++.
T Consensus 356 ------------------g~i~iw~~~~~~~ 368 (408)
T 4a11_B 356 ------------------CNILAWVPSLYEP 368 (408)
T ss_dssp ------------------SCEEEEEECC---
T ss_pred ------------------CeEEEEeCCCCCc
Confidence 2788899987764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-09 Score=105.34 Aligned_cols=311 Identities=12% Similarity=0.082 Sum_probs=163.4
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecC-CCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDPPK 114 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~-~~~~~~~ 114 (751)
....|||++++.+.. ........|+++|+++++...-..... . -. ++.||||++|+..... .+..
T Consensus 38 ~~~~pd~~~vyV~~~-----~~~~~~~~V~ViD~~t~~v~~~I~vG~---~--P~-va~spDG~~lyVan~~~~r~~--- 103 (386)
T 3sjl_D 38 EAPAPDARRVYVNDP-----AHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PN-PVVADDGSFIAHASTVFSRIA--- 103 (386)
T ss_dssp CCCCCCTTEEEEEEC-----GGGCSSEEEEEEETTTTEEEEEEEECS---S--CE-EEECTTSSCEEEEEEEEEETT---
T ss_pred eccCCCCCEEEEEcC-----cccCCCCEEEEEECCCCeEEEEEECCC---C--Cc-EEECCCCCEEEEEcccccccc---
Confidence 455799999865431 101224799999999887443222111 1 23 8999999999887320 0000
Q ss_pred CCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eec--CC------CceEEeeeeCC
Q 004475 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDF--GT------PAVYTAVEPSP 184 (751)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~l--t~------~~~~~~~~~Sp 184 (751)
.+ .....|.++|. +++. ..+ .. ......+.+||
T Consensus 104 --------------~G-----------------------~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 104 --------------RG-----------------------ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp --------------EE-----------------------EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred --------------cC-----------------------CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 00 01246888898 6643 223 11 01344689999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc-eeeeecCCCceEEEEEec
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~spdG~~~i~~~~~~ 263 (751)
||+++++..... ...+.++|+.+.+...-...++.... ...+.+ -++.++||+. +++....
T Consensus 147 DGk~lyVan~~~-----------~~~VsVID~~t~~vv~tI~v~g~~~~------~P~g~~~~~~~~~DG~~-~~v~~~~ 208 (386)
T 3sjl_D 147 DGKTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHI------FPTAPDTFFMHCRDGSL-AKVAFGT 208 (386)
T ss_dssp TSSEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEE------EEEETTEEEEEETTSCE-EEEECCS
T ss_pred CCCEEEEEEcCC-----------CCeEEEEECCCCcEEEEEECCCccee------ecCCCceeEEECCCCCE-EEEECCC
Confidence 999999874321 24688999988765432233322110 001111 2477888875 4443211
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEe-cCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
.+. .. ..+.. .++.+ ...... +.|. +||+ ++|.+. ..+++.+|..++ ..+.+.
T Consensus 209 ~g~-v~---~~~~~--~~~~~------------~~~~~~~~~~~~~dG~-~~~vs~----~g~V~v~d~~~~--~~~v~~ 263 (386)
T 3sjl_D 209 EGT-PE---ITHTE--VFHPE------------DEFLINHPAYSQKAGR-LVWPTY----TGKIHQIDLSSG--DAKFLP 263 (386)
T ss_dssp SSC-CE---EEECC--CCSCT------------TSCBCSCCEEETTTTE-EEEEBT----TSEEEEEECTTS--SCEECC
T ss_pred CCe-EE---Eeecc--eeccc------------cccccccceeEcCCCc-EEEEeC----CCEEEEEECCCC--cceeec
Confidence 010 00 00000 01110 011111 4664 7886 455442 347999999774 222221
Q ss_pred ecc------cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 342 DRV------FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 342 ~~~------~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
... ...-+.-.+...++++||++.|+...... ...++...-..|+++|+++++...-+....
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~-----------~~~~hk~~~~~V~viD~~t~kv~~~i~vg~- 331 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR-----------DEWRHKTASRFVVVLDAKTGERLAKFEMGH- 331 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC-----------CTTCTTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccc-----------cccccCCCCCEEEEEECCCCeEEEEEECCC-
Confidence 111 00000000111266788888887765321 111222233589999999998765544321
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
....+++|+|++.++|+... ....+.++|..+++..+
T Consensus 332 -----------~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 332 -----------EIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELR 368 (386)
T ss_dssp -----------EECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEE
T ss_pred -----------CcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEE
Confidence 12236899999856655432 24579999999987554
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-11 Score=114.65 Aligned_cols=146 Identities=13% Similarity=0.042 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEccCCCCCCCCccCcccccccc
Q 004475 578 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKTLTPFGFQTEFRTL 652 (751)
Q Consensus 578 ~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~ 652 (751)
.....+++..+++.+.++.. ..++.++||||||.++..++.++ |++++.+|++++.++-..... ....
T Consensus 77 ~~~~a~~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~---~~~~-- 149 (250)
T 3lp5_A 77 IDKQAVWLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST---TAKT-- 149 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCS---SCCC--
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccccc---cccC--
Confidence 45668899999999987643 46899999999999999999876 678999999998765322110 0000
Q ss_pred hhhHHHHHhcCcccccCCCCCCEEEEEcC----CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC--CCCCcCCccccHH
Q 004475 653 WEATNVYIEMSPITHANKIKKPILIIHGE----VDDKVGLFPMQAERFFDALKGHGALSRLVLLP--FEHHVYAARENVM 726 (751)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~P~li~~G~----~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~H~~~~~~~~~ 726 (751)
.....+... ...+.+ ++|+|+|+|+ .|..|| ...++.+...++..........+. +++|..+. ++.
T Consensus 150 -~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp--~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l~-e~~- 221 (250)
T 3lp5_A 150 -SMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVP--YNSVNYGKYIFQDQVKHFTEITVTGANTAHSDLP-QNK- 221 (250)
T ss_dssp -HHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCC--HHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCHH-HHH-
T ss_pred -HHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceee--HHHHHHHHHHhcccccceEEEEEeCCCCchhcch-hCH-
Confidence 111112111 122333 6999999999 899999 888877777776543444444554 46798763 333
Q ss_pred HHHHHHHHHHHH
Q 004475 727 HVIWETDRWLQK 738 (751)
Q Consensus 727 ~~~~~~~~fl~~ 738 (751)
++.+.+.+||.+
T Consensus 222 ~v~~~I~~FL~~ 233 (250)
T 3lp5_A 222 QIVSLIRQYLLA 233 (250)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHhc
Confidence 778888888854
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-10 Score=122.40 Aligned_cols=219 Identities=6% Similarity=-0.008 Sum_probs=130.3
Q ss_pred CcceeEEeecCCCCCCCCccc-----ccCCCCcccccceeecCC------CCeEEEEEeecccccccCCceeEEEEEcCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKE-----VHGYPDGAKINFVSWSPD------GKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~-----l~~~~~~~~~~~p~~SPD------G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~ 71 (751)
+...|.+|++.+ ++... +.. ....+...+|||+ |+.||..+ ..+.|.++++.+
T Consensus 181 ~D~tI~iWd~~~----~~~~~~~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s----------~DgtvrlWd~~~ 244 (524)
T 2j04_B 181 HSSCIQIFKMNT----STLHCVKVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVS----------QEGTINFLEIID 244 (524)
T ss_dssp -CEEEEEEEEET----TTCCEEEEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEE----------TTSCEEEEECCC
T ss_pred CCceEEEEEccC----CCCCceEEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEe----------cCCeEEEEEcCC
Confidence 445688999988 65421 221 1124778899997 56787754 235666677766
Q ss_pred CCee-----ecc----CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhcc
Q 004475 72 GEAK-----PLF----ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142 (751)
Q Consensus 72 g~~~-----~lt----~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (751)
++.. .+. ....+ ...+..++|+|++ .|+..+.+
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~h--~~~v~sv~~s~~~-~lasgs~D----------------------------------- 286 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSLA--DSLITTFDFLSPT-TVVCGFKN----------------------------------- 286 (524)
T ss_dssp CSSSSSEEECCCSCSEEECCT--TTCEEEEEESSSS-EEEEEETT-----------------------------------
T ss_pred CccccccceeecCceEEEEcC--CCCEEEEEecCCC-eEEEEeCC-----------------------------------
Confidence 5421 110 00111 1246789999876 57766432
Q ss_pred CCccchhhhhhheeeEEEEEcC-CC-Cc-eecCCC-ceEEee--eeCCCC-ceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 143 KDEYDESLFDYYTTAQLVLGSL-DG-TA-KDFGTP-AVYTAV--EPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~-~G-~~-~~lt~~-~~~~~~--~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
..|.++|+ ++ .+ ..+..+ ..+..+ .|+||| +.|+..+.+ ..+.+||
T Consensus 287 --------------gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D-------------~tvklWD 339 (524)
T 2j04_B 287 --------------GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD-------------GYFYIFN 339 (524)
T ss_dssp --------------SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT-------------SEEEEEC
T ss_pred --------------CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC-------------CeEEEEE
Confidence 47788888 45 22 234444 667777 689999 555554433 3688999
Q ss_pred CCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe
Q 004475 216 TDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (751)
Q Consensus 216 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 294 (751)
+.+++.. .+..... ...+..++|||||+. ++..+ ..+.+.++++.. +.....+
T Consensus 340 ~~~~~~~~~~~~~~~-----------~~~v~~v~fsp~~~~-l~s~~------------~d~tv~lwd~~~--~~~~~~l 393 (524)
T 2j04_B 340 PKDIATTKTTVSRFR-----------GSNLVPVVYCPQIYS-YIYSD------------GASSLRAVPSRA--AFAVHPL 393 (524)
T ss_dssp GGGHHHHCEEEEECS-----------CCSCCCEEEETTTTE-EEEEC------------SSSEEEEEETTC--TTCCEEE
T ss_pred CCCCCcccccccccc-----------cCcccceEeCCCcCe-EEEeC------------CCCcEEEEECcc--cccceee
Confidence 8765432 1111100 012457899999987 44432 223677888741 3344566
Q ss_pred EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 295 HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 295 ~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
......+. ++|||||+.|+.++. ...|.+.++..
T Consensus 394 ~gH~~~V~sva~Sp~g~~l~Sgs~----Dgtv~lwd~~~ 428 (524)
T 2j04_B 394 VSRETTITAIGVSRLHPMVLAGSA----DGSLIITNAAR 428 (524)
T ss_dssp EECSSCEEEEECCSSCCBCEEEET----TTEEECCBSCS
T ss_pred ecCCCceEEEEeCCCCCeEEEEEC----CCEEEEEechH
Confidence 67777777 999999998876552 23555566544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-09 Score=121.61 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=53.7
Q ss_pred ceeEEeecCCCCCCCCcccc---------cCC-CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe
Q 004475 5 TGIGIHRLLPDDSLGPEKEV---------HGY-PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l---------~~~-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~ 74 (751)
..|.+||+.+ ++.... ..+ .....+...+|||++..++.+. .....| ++|+.+++.
T Consensus 120 g~V~lwd~~~----~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g---------~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 120 GSMIVYDIDR----DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS---------YEYVTL-TYSLVENEI 185 (902)
T ss_dssp SCEEEEETTT----TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE---------CSSCEE-EEETTTTEE
T ss_pred CcEEEEECCC----CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE---------eCCCcE-EEECCCCce
Confidence 4689999988 664211 101 1122588999999764443333 334667 889988775
Q ss_pred eeccCCC------C--------ccccceeeeeEEecCCcEEEEeecC
Q 004475 75 KPLFESP------D--------ICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 75 ~~lt~~~------~--------~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
.+..... . ......+..++|||||++|+..+.+
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 4332211 0 0001247789999999999887543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-09 Score=108.35 Aligned_cols=244 Identities=7% Similarity=-0.017 Sum_probs=129.8
Q ss_pred eEEEEEcC-CCCceecC-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|++++. +|+.+.+. .. ..+..++|+|||+.++.. .... .....|++++.+++..+.+.....
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~-~~~~--------~~~~~i~~~d~~~~~~~~~~~~~~---- 132 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY-LGDF--------KSTGGIFAATENGDNLQDIIEDLS---- 132 (333)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEE-CTTS--------SSCCEEEEECTTSCSCEEEECSSS----
T ss_pred CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEe-CCCC--------CCCceEEEEeCCCCEEEEEEccCc----
Confidence 47899999 56666554 23 667889999999754443 2210 012468999998876653322110
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
....+..+.++|||+ ++++..... .......|++++.+ ++....+........ +.|+|||+.|
T Consensus 133 ------~~~~~~~i~~d~~g~--l~v~~~~~~-----~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 133 ------TAYCIDDMVFDSKGG--FYFTDFRGY-----STNPLGGVYYVSPD---FRTVTPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp ------SCCCEEEEEECTTSC--EEEEECCCB-----TTBCCEEEEEECTT---SCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred ------cCCcccceEECCCCC--EEEEecccc-----ccCCCceEEEEeCC---CCEEEEeecCCCcccceEECCCCCEE
Confidence 012345789999996 455431100 01123578988875 444545444333345 8999999988
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
++... ....|++++.++.......+................+++++||+.++... .
T Consensus 197 ~v~~~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~---------------------~ 252 (333)
T 2dg1_A 197 WVTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY---------------------G 252 (333)
T ss_dssp EEEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE---------------------T
T ss_pred EEEeC---CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc---------------------C
Confidence 77652 23478888875320111111100000000000000167888887433322 1
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecC--CCCCeEEEEEcC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK--TEITQYHILSWP 459 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~l~~~~~~ 459 (751)
...|++||.+ ++....+..... ..........++|++|++.|+++.... .....||.+++.
T Consensus 253 ~~~v~~~d~~-g~~~~~~~~~~~-----~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 253 QGRVLVFNKR-GYPIGQILIPGR-----DEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TTEEEEECTT-SCEEEEEECTTG-----GGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCEEEEECCC-CCEEEEEEcCCC-----ccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 2368888885 443333222110 000000133468899998888776543 224568888865
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9e-09 Score=112.64 Aligned_cols=300 Identities=9% Similarity=-0.055 Sum_probs=168.6
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCee-eccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
..+.|+.|...++|+.. .....|+++|+++++.. .+..+. ....+.+||||++|+....+
T Consensus 157 ~~~~~~~d~~~~~~V~~--------~~~~~V~viD~~t~~v~~~i~~g~------~p~~v~~SpDGr~lyv~~~d----- 217 (567)
T 1qks_A 157 TQQMNDWDLENLFSVTL--------RDAGQIALIDGSTYEIKTVLDTGY------AVHISRLSASGRYLFVIGRD----- 217 (567)
T ss_dssp SSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCCEEEEEECSS------CEEEEEECTTSCEEEEEETT-----
T ss_pred cccccccCCCceEEEEe--------CCCCeEEEEECCCCeEEEEEeCCC------CccceEECCCCCEEEEEcCC-----
Confidence 35778888778888875 45579999999998754 342222 24578999999998876321
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CCC-ceecCCCceEEeeeeC----C
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGT-AKDFGTPAVYTAVEPS----P 184 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G~-~~~lt~~~~~~~~~~S----p 184 (751)
..|.++|+ +++ ..++........++|| |
T Consensus 218 --------------------------------------------g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p 253 (567)
T 1qks_A 218 --------------------------------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW 253 (567)
T ss_dssp --------------------------------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC
T ss_pred --------------------------------------------CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC
Confidence 46888888 332 3344334456688999 7
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
|||++++.... ...+.++|..+.++...............+. ....+..+..|+++.. +++.
T Consensus 254 DGk~l~v~n~~------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~-~vv~---- 315 (567)
T 1qks_A 254 EDKYAIAGAYW------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPE-FIVN---- 315 (567)
T ss_dssp TTTEEEEEEEE------------TTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSE-EEEE----
T ss_pred CCCEEEEEEcc------------CCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCE-EEEE----
Confidence 99999987554 3467788987765443222111000000000 0012346778888876 3332
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
+...++|.+++.. ......++. ...... ..|+|||++++.+.+. ...|.++|+.++ +.....
T Consensus 316 -------~~~~g~v~~vd~~---~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~--kl~~~i 380 (567)
T 1qks_A 316 -------VKETGKILLVDYT---DLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEG--KLVAIE 380 (567)
T ss_dssp -------ETTTTEEEEEETT---CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTT--EEEEEE
T ss_pred -------ecCCCeEEEEecC---CCccceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCC--cEEEEE
Confidence 1234688888875 211111221 122234 7899999988776632 357889999885 222222
Q ss_pred ec-ccccccCCCCCCCee-eCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc-----eeEEeeccc
Q 004475 342 DR-VFENVYSDPGSPMMT-RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS-----KERIWESNR 414 (751)
Q Consensus 342 ~~-~~~~~~~~~~~~~~~-~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~l~~~~~ 414 (751)
.. .... .++.. .. ++||+..+++..+. ....|.++|.++++ .+.+-....
T Consensus 381 ~vgg~~P---hpg~g-~~~~~p~~g~v~~t~~~-------------------g~~~Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 381 DTGGQTP---HPGRG-ANFVHPTFGPVWATSHM-------------------GDDSVALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp ECSSSSB---CCTTC-EEEEETTTEEEEEEEBS-------------------SSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred eccCcCC---CCccc-eeeECCCCCcEEEeCCC-------------------CCCeEEEecCCCCCCccccCEEEEEEec
Confidence 22 1110 11211 22 47887777665521 12257777776532 111111100
Q ss_pred hhhhhceeeeecCCcceeeccCCCEEEEEEe-cCC--CCCeEEEEEcCCC
Q 004475 415 EKYFETAVALVFGQGEEDINLNQLKILTSKE-SKT--EITQYHILSWPLK 461 (751)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~--~~~~l~~~~~~~g 461 (751)
.....-.+..+|||++|++... ++. ....|.++|+.+.
T Consensus 438 ---------~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 438 ---------LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ---------SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ---------CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 0011122577999998877542 221 1347999998765
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-10 Score=118.71 Aligned_cols=215 Identities=11% Similarity=0.029 Sum_probs=126.6
Q ss_pred CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh------CCeEEEEcCCC
Q 004475 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA------RRFAVLAGPSI 563 (751)
Q Consensus 490 ~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~G~~v~~~~~~ 563 (751)
+|..|+.....+.. ...|.||++||.+. ....| ......|++ .||.|++ +
T Consensus 93 ~g~~i~~~~~~~~~------~~~~pllllHG~~~--------------s~~~~-~~~~~~L~~~~~~~~~gf~vv~---~ 148 (408)
T 3g02_A 93 EGLTIHFAALFSER------EDAVPIALLHGWPG--------------SFVEF-YPILQLFREEYTPETLPFHLVV---P 148 (408)
T ss_dssp TTEEEEEEEECCSC------TTCEEEEEECCSSC--------------CGGGG-HHHHHHHHHHCCTTTCCEEEEE---E
T ss_pred CCEEEEEEEecCCC------CCCCeEEEECCCCC--------------cHHHH-HHHHHHHhcccccccCceEEEE---E
Confidence 78888888876543 12477999999641 11111 133445665 5999999 6
Q ss_pred CCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 564 PIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPS-RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 564 ~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~-~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
+.+|+|.+.... .......+++..+++.+ ..+ +++++||||||.+|+.+|.++|+.+..++..++....
T Consensus 149 DlpG~G~S~~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~ 222 (408)
T 3g02_A 149 SLPGYTFSSGPPLDKDFGLMDNARVVDQLMKDL------GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAP 222 (408)
T ss_dssp CCTTSTTSCCSCSSSCCCHHHHHHHHHHHHHHT------TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCC
Confidence 667887765432 23445555555555443 234 8999999999999999999997755555544433221
Q ss_pred CCCc--cCccccc---------------c-------------------------------cchh-----hHH--------
Q 004475 639 TLTP--FGFQTEF---------------R-------------------------------TLWE-----ATN-------- 657 (751)
Q Consensus 639 ~~~~--~~~~~~~---------------~-------------------------------~~~~-----~~~-------- 657 (751)
.... ..+.... . ..|. ..+
T Consensus 223 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y 302 (408)
T 3g02_A 223 PEGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLY 302 (408)
T ss_dssp TTCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 1000 0000000 0 0000 000
Q ss_pred -----------HHHhcCc---cc-------ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 004475 658 -----------VYIEMSP---IT-------HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEH 716 (751)
Q Consensus 658 -----------~~~~~~~---~~-------~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (751)
.|.+... .. .+..+++|+++++|.+|...+ +.. +.+.. ..-+.+.+++++|
T Consensus 303 ~~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~--p~~---~~~~~---~~~~~~~~~~~gG 374 (408)
T 3g02_A 303 WLTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPV--PRS---WIATT---GNLVFFRDHAEGG 374 (408)
T ss_dssp HHTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCC--CHH---HHGGG---EEEEEEEECSSCB
T ss_pred HhhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccC--cHH---HHHhc---CCeeEEEECCCCc
Confidence 0111000 00 234578999999999997665 332 22222 2247889999999
Q ss_pred CcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 717 HVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 717 H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
|... .+..+.+...+.+||...-..+
T Consensus 375 Hf~~-lE~Pe~~~~~l~~fl~~~~~~~ 400 (408)
T 3g02_A 375 HFAA-LERPRELKTDLTAFVEQVWQKG 400 (408)
T ss_dssp SCHH-HHCHHHHHHHHHHHHHHHC---
T ss_pred Cchh-hhCHHHHHHHHHHHHHHHHHcC
Confidence 9876 6778899999999998765443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=109.02 Aligned_cols=258 Identities=9% Similarity=0.074 Sum_probs=152.7
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~ 82 (751)
...|++|++.+ ++...... .....+...+|||||+.|+... ....|.++++..... +.+.....
T Consensus 38 dg~v~vw~~~~----~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~~~~~~~~~~~~~~~~~~ 102 (313)
T 3odt_A 38 DGTVRLWSKDD----QWLGTVVY-TGQGFLNSVCYDSEKELLLFGG----------KDTMINGVPLFATSGEDPLYTLIG 102 (313)
T ss_dssp TSEEEEEEESS----SEEEEEEE-ECSSCEEEEEEETTTTEEEEEE----------TTSCEEEEETTCCTTSCC-CEECC
T ss_pred CCcEEEEECCC----CEEEEEee-cCCccEEEEEECCCCCEEEEec----------CCCeEEEEEeeecCCCCcccchhh
Confidence 34699999977 76554432 2233688999999999998864 335666666655421 11111111
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
+ ...+..+.| +++.|+..+.+ ..|.++
T Consensus 103 ~--~~~i~~~~~--~~~~l~~~~~d-------------------------------------------------~~i~~~ 129 (313)
T 3odt_A 103 H--QGNVCSLSF--QDGVVISGSWD-------------------------------------------------KTAKVW 129 (313)
T ss_dssp C--SSCEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEEE
T ss_pred c--ccCEEEEEe--cCCEEEEEeCC-------------------------------------------------CCEEEE
Confidence 1 113556677 67777766432 356666
Q ss_pred cCCC-CceecCCC-ceEEeeeeCC-CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 163 SLDG-TAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 163 ~~~G-~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+ .+ ....+..+ ..+..+.|+| +++.|+....+ ..+.+||... ....+...
T Consensus 130 d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~-~~~~~~~~------------ 182 (313)
T 3odt_A 130 K-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD-------------KTIKLWQNDK-VIKTFSGI------------ 182 (313)
T ss_dssp E-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT-------------SCEEEEETTE-EEEEECSS------------
T ss_pred c-CCcEEEecccCCCceeEEEEccCCCCEEEEEECC-------------CCEEEEecCc-eEEEEecc------------
Confidence 6 34 33444444 6777888888 88888776543 3578888432 22222110
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY 318 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~ 318 (751)
....+..+.|+|+|+ ++... ..+.|+++++.. +.....+......+. +.|+|+|+ |+...
T Consensus 183 ~~~~i~~~~~~~~~~--~~~~~------------~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~-- 243 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH--FISCS------------NDGLIKLVDMHT--GDVLRTYEGHESFVYCIKLLPNGD-IVSCG-- 243 (313)
T ss_dssp CSSCEEEEEEEETTE--EEEEE------------TTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSC-EEEEE--
T ss_pred CcccEEEEEEcCCCe--EEEcc------------CCCeEEEEECCc--hhhhhhhhcCCceEEEEEEecCCC-EEEEe--
Confidence 123356899999998 33332 235788888851 223344444566677 99999995 55433
Q ss_pred cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 319 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
....|.+.++.++ ............+.. ++|+|||+ ++..+. ...|++
T Consensus 244 --~dg~v~iwd~~~~--~~~~~~~~~~~~i~~------~~~~~~~~-~~~~~~---------------------dg~i~i 291 (313)
T 3odt_A 244 --EDRTVRIWSKENG--SLKQVITLPAISIWS------VDCMSNGD-IIVGSS---------------------DNLVRI 291 (313)
T ss_dssp --TTSEEEEECTTTC--CEEEEEECSSSCEEE------EEECTTSC-EEEEET---------------------TSCEEE
T ss_pred --cCCEEEEEECCCC--ceeEEEeccCceEEE------EEEccCCC-EEEEeC---------------------CCcEEE
Confidence 2357888888774 333333222222222 78999998 444441 236888
Q ss_pred EecCCCcee
Q 004475 399 FDINTGSKE 407 (751)
Q Consensus 399 ~d~~~g~~~ 407 (751)
|++.+++..
T Consensus 292 w~~~~~~~~ 300 (313)
T 3odt_A 292 FSQEKSRWA 300 (313)
T ss_dssp EESCGGGCC
T ss_pred EeCCCCcee
Confidence 999876543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-08 Score=109.88 Aligned_cols=283 Identities=8% Similarity=0.005 Sum_probs=163.9
Q ss_pred eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCC
Q 004475 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (751)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 116 (751)
.+++||++|+..+ ..+.|.++++.+++......+... .+..++|+|++ .|+..+.+
T Consensus 127 ~~~~~~~~l~sgs----------~dg~i~vwd~~~~~~~~~~~~h~~----~V~~l~~~~~~-~l~s~s~d--------- 182 (464)
T 3v7d_B 127 CLQFEDNYVITGA----------DDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAHGG-ILVSGSTD--------- 182 (464)
T ss_dssp EEEEETTEEEEEE----------TTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSTT-EEEEEETT---------
T ss_pred EEEECCCEEEEEc----------CCCcEEEEECCCCcEEEEEeCCCc----CEEEEEEcCCC-EEEEEeCC---------
Confidence 5777888887753 346788889888875443332221 47889999999 56555332
Q ss_pred CCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeC--CCCceEEE
Q 004475 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPS--PDQKYVLI 191 (751)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~S--pDG~~i~~ 191 (751)
..|.++|+ +|+ ...+..+ ..+..++|+ +|+++|+.
T Consensus 183 ----------------------------------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 183 ----------------------------------------RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp ----------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred ----------------------------------------CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 46777888 663 3444434 667777777 68888877
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC--------CCC---CccCCccCCCceeeeecCCCceEEEE
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE--------DIP---VCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~--------~~~---~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
.+.+ ..+.+||+.++............ ..+ ..+.. ....-..++++++. ++..
T Consensus 223 ~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~ 286 (464)
T 3v7d_B 223 GSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNI-VVSG 286 (464)
T ss_dssp EETT-------------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC--CSSCEEEEEEETTE-EEEE
T ss_pred EcCC-------------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC--ccceEEEEcCCCCE-EEEE
Confidence 6543 35888998765432111000000 000 00001 11123456888887 5554
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
. ..+.|.++++.. +.....+......+. +.|+|+|+.|+.++. ...|.+.++.++ ....
T Consensus 287 ~------------~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~--~~~~ 346 (464)
T 3v7d_B 287 S------------YDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASM----DTTIRIWDLENG--ELMY 346 (464)
T ss_dssp E------------TTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEET----TSCEEEEETTTT--EEEE
T ss_pred e------------CCCeEEEEECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEE
Confidence 3 235788888851 222333334455666 999999998887652 245777777764 2222
Q ss_pred eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhh
Q 004475 340 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 419 (751)
........+.. ++|+ ++.|+..+.+ ..|.+||+.+++.........
T Consensus 347 ~~~~h~~~v~~------~~~~--~~~l~s~s~d---------------------g~v~vwd~~~~~~~~~~~~~~----- 392 (464)
T 3v7d_B 347 TLQGHTALVGL------LRLS--DKFLVSAAAD---------------------GSIRGWDANDYSRKFSYHHTN----- 392 (464)
T ss_dssp EECCCSSCEEE------EEEC--SSEEEEEETT---------------------SEEEEEETTTCCEEEEEECTT-----
T ss_pred EEeCCCCcEEE------EEEc--CCEEEEEeCC---------------------CcEEEEECCCCceeeeecCCC-----
Confidence 22222222211 4454 6777776632 278999998776443332211
Q ss_pred ceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 420 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
.....+++++++.++... -+.+.++|+.+|+..+
T Consensus 393 -------~~~~~~~~~~~~~l~~~~-----dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 393 -------LSAITTFYVSDNILVSGS-----ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -------CCCEEEEEECSSEEEEEE-----TTEEEEEETTTCCEEE
T ss_pred -------CccEEEEEeCCCEEEEec-----CCeEEEEECCCCcEEe
Confidence 112257899998776543 2579999999887654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-09 Score=108.02 Aligned_cols=256 Identities=9% Similarity=0.024 Sum_probs=148.5
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
.+.+.+.. .......|+|+|||+.|+++. .....|++++++++ .+.+..... ....++++|||
T Consensus 18 ~~~~~l~~--~~~~~eg~~~d~~g~~l~~~~---------~~~~~i~~~~~~~~-~~~~~~~~~-----~~~~l~~~~dg 80 (296)
T 3e5z_A 18 AEARRLAD--GFTWTEGPVYVPARSAVIFSD---------VRQNRTWAWSDDGQ-LSPEMHPSH-----HQNGHCLNKQG 80 (296)
T ss_dssp CCCEEEEC--CCSSEEEEEEEGGGTEEEEEE---------GGGTEEEEEETTSC-EEEEESSCS-----SEEEEEECTTC
T ss_pred CcEEEEec--CCccccCCeEeCCCCEEEEEe---------CCCCEEEEEECCCC-eEEEECCCC-----CcceeeECCCC
Confidence 45555542 222456899999999888875 33468999999888 666543322 25678999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---
Q 004475 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--- 174 (751)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~--- 174 (751)
+.++.... ...|++++. +|+.+.+...
T Consensus 81 ~l~v~~~~-------------------------------------------------~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 81 HLIACSHG-------------------------------------------------LRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp CEEEEETT-------------------------------------------------TTEEEEECSTTCCEEEEECEETT
T ss_pred cEEEEecC-------------------------------------------------CCeEEEEcCCCCcEEEEeeccCC
Confidence 85543311 046888998 8876655332
Q ss_pred ---ceEEeeeeCCCCceEEEEEec-CC---cc-cccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCce
Q 004475 175 ---AVYTAVEPSPDQKYVLITSMH-RP---YS-YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (751)
Q Consensus 175 ---~~~~~~~~SpDG~~i~~~~~~-~~---~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (751)
.....++++|||+ |+++... .. .. ...........||.++.+ ++.+.+.... .....
T Consensus 112 ~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~g 176 (296)
T 3e5z_A 112 KKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKPNG 176 (296)
T ss_dssp EECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSEEE
T ss_pred CCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCCcc
Confidence 1234689999997 4554211 00 00 000000012478899887 4444432211 12347
Q ss_pred eeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC---ceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 247 ~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
++|+|||+. + ++.. ..+.|++++++ .++.. ...+........ +.+++||+ |+.+. .
T Consensus 177 i~~s~dg~~-l-v~~~-----------~~~~i~~~~~~-~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-----~ 236 (296)
T 3e5z_A 177 LAFLPSGNL-L-VSDT-----------GDNATHRYCLN-ARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-----G 236 (296)
T ss_dssp EEECTTSCE-E-EEET-----------TTTEEEEEEEC-SSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-----T
T ss_pred EEECCCCCE-E-EEeC-----------CCCeEEEEEEC-CCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-----C
Confidence 899999997 5 5431 23478888874 11221 112211122234 78999998 44433 2
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeee-CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
..|++++.++. ....+..... ... ++| +|||+.|++.+. ..|++++.
T Consensus 237 ~~v~~~~~~g~--~~~~~~~~~~--~~~------~~f~~~d~~~L~v~t~----------------------~~l~~~~~ 284 (296)
T 3e5z_A 237 DGVHVLTPDGD--ELGRVLTPQT--TSN------LCFGGPEGRTLYMTVS----------------------TEFWSIET 284 (296)
T ss_dssp TEEEEECTTSC--EEEEEECSSC--CCE------EEEESTTSCEEEEEET----------------------TEEEEEEC
T ss_pred CeEEEECCCCC--EEEEEECCCC--cee------EEEECCCCCEEEEEcC----------------------CeEEEEEc
Confidence 46888998752 2222221111 111 667 689998888772 26899999
Q ss_pred CCCcee
Q 004475 402 NTGSKE 407 (751)
Q Consensus 402 ~~g~~~ 407 (751)
++++++
T Consensus 285 ~~~~~~ 290 (296)
T 3e5z_A 285 NVRGLE 290 (296)
T ss_dssp SCCBCC
T ss_pred cccccc
Confidence 877654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-09 Score=107.50 Aligned_cols=309 Identities=12% Similarity=0.059 Sum_probs=159.1
Q ss_pred cCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCC
Q 004475 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (751)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 118 (751)
.||++++ |+.+.. .......|.++|+++++...-..... .- .+++||||++|+.........
T Consensus 81 ~~~~~~v-yV~n~~----~~~~~~~VsVID~~t~~vv~~I~vG~-----~P-gia~SpDgk~lyVan~~~~~~------- 142 (426)
T 3c75_H 81 APDARRV-YIQDPA----HFAAITQQFVIDGSTGRILGMTDGGF-----LP-HPVAAEDGSFFAQASTVFERI------- 142 (426)
T ss_dssp CCCTTEE-EEEECT----TTCSSEEEEEEETTTTEEEEEEEECS-----SC-EEEECTTSSCEEEEEEEEEET-------
T ss_pred CCCCCEE-EEECCC----cCCCCCeEEEEECCCCEEEEEEECCC-----CC-ceEECCCCCEEEEEecccccc-------
Confidence 3788775 554311 00111799999999887443222121 12 679999999998874210000
Q ss_pred CCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecC-C-------CceEEeeeeCCCCce
Q 004475 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-T-------PAVYTAVEPSPDQKY 188 (751)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt-~-------~~~~~~~~~SpDG~~ 188 (751)
........|.++|. +++. ..+. . ......+.+||||++
T Consensus 143 --------------------------------~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 143 --------------------------------ARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN 190 (426)
T ss_dssp --------------------------------TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred --------------------------------ccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 00001257888998 6643 2331 1 123357899999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++..... ...+.++|+.+.+...-...+.... ........-+++++||+. +++.. ..+ ..
T Consensus 191 lyV~n~~~-----------~~~VsVID~~t~kvv~~I~v~g~~~-----~~p~g~~~~v~~~~dG~~-~~V~~-~~~-~v 251 (426)
T 3c75_H 191 LLFYQFSP-----------APAVGVVDLEGKTFDRMLDVPDCYH-----IFPASPTVFYMNCRDGSL-ARVDF-ADG-ET 251 (426)
T ss_dssp EEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEE-----EEEEETTEEEEEETTSSE-EEEEC-CTT-CC
T ss_pred EEEEecCC-----------CCeEEEEECCCCeEEEEEEcCCcee-----eccCCCcEEEEEcCCCCE-EEEEC-CCC-cE
Confidence 99874321 3468899998776542212211100 000000112456666654 33321 100 00
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc---
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--- 344 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--- 344 (751)
.. +.. ..++.+ . ..... +.+++|++.++|.+. ...++++|..+. ..+.+....
T Consensus 252 ~~----~~~-~~~~v~---~---------~p~~~~~~~~~dg~~~~~~s~----~g~V~ViD~~~~--~~~v~~~~~~~~ 308 (426)
T 3c75_H 252 KV----TNT-EVFHTE---D---------ELLINHPAFSLRSGRLVWPTY----TGKIFQADLTAE--GATFRAPIEALT 308 (426)
T ss_dssp EE----EEC-CCCSCT---T---------SCBCSCCEECTTTCEEEEEBT----TSEEEEEEECSS--CEEECCCEESSC
T ss_pred EE----Eee-eeeccC---C---------CceeeEeeecCCCCEEEEEeC----CCcEEEEeccCC--ceEEeeeeeecc
Confidence 00 000 111211 0 00111 578999999988763 247999998763 211111100
Q ss_pred --cccc-cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhce
Q 004475 345 --FENV-YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 421 (751)
Q Consensus 345 --~~~~-~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 421 (751)
.... +.-.+...++++|||+.|++..... ...++......|.++|+++++...-+....
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~-----------~~gthk~~s~~VsVID~~T~kvv~~I~vg~------- 370 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQR-----------DEWKHKAASRFVVVLNAETGERINKIELGH------- 370 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC-----------CTTCTTSCEEEEEEEETTTCCEEEEEEEEE-------
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEeccc-----------ccccccCCCCEEEEEECCCCeEEEEEECCC-------
Confidence 0000 0000111267899998887765210 000111123479999999987755443321
Q ss_pred eeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 422 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 422 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
.+..++|+|||+.++|+.... ...+.++|+.+++..
T Consensus 371 -----~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv 406 (426)
T 3c75_H 371 -----EIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEEL 406 (426)
T ss_dssp -----EECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEE
T ss_pred -----CcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEE
Confidence 133468999999555554321 357999999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-08 Score=101.72 Aligned_cols=229 Identities=9% Similarity=0.019 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
..|++++.++..+.+... .....++++|||+.+ +.... ...|++|+..+++.+.+......
T Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~-v~~~~------------~~~i~~~d~~~g~~~~~~~~~~~----- 111 (296)
T 3e5z_A 50 NRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLI-ACSHG------------LRRLERQREPGGEWESIADSFEG----- 111 (296)
T ss_dssp TEEEEEETTSCEEEEESSCSSEEEEEECTTCCEE-EEETT------------TTEEEEECSTTCCEEEEECEETT-----
T ss_pred CEEEEEECCCCeEEEECCCCCcceeeECCCCcEE-EEecC------------CCeEEEEcCCCCcEEEEeeccCC-----
Confidence 478999985445555544 567789999999854 43221 23688999976666554321100
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCC------CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRG------DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.....+..++++|||+ ++++....+. .........+.||.++.+ +....+........ ++|+||
T Consensus 112 ---~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 112 ---KKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ---EECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEEECCCSSEEEEEECTT
T ss_pred ---CCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC----CCEEEeecCCCCCccEEECCC
Confidence 0011245789999997 5554311000 000001113478888763 33444444333445 899999
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcc---eeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAP---RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
|+.| ++. .....|++++++.. +.. ..+...... ..-.+++++||+ |++.. .
T Consensus 183 g~~l-v~~---~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~------~p~~i~~d~~G~-l~v~~-~------------- 236 (296)
T 3e5z_A 183 GNLL-VSD---TGDNATHRYCLNAR-GETEYQGVHFTVEPG------KTDGLRVDAGGL-IWASA-G------------- 236 (296)
T ss_dssp SCEE-EEE---TTTTEEEEEEECSS-SCEEEEEEEECCSSS------CCCSEEEBTTSC-EEEEE-T-------------
T ss_pred CCEE-EEe---CCCCeEEEEEECCC-CcCcCCCeEeeCCCC------CCCeEEECCCCC-EEEEc-C-------------
Confidence 9988 544 22357888877521 222 222211111 111278899997 33333 1
Q ss_pred CCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceee-ccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 386 GFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
..|++|+.+ |+......... . ...++| ++|++.|+.+. ...||++++.+++.+
T Consensus 237 --------~~v~~~~~~-g~~~~~~~~~~-----------~-~~~~~f~~~d~~~L~v~t-----~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 237 --------DGVHVLTPD-GDELGRVLTPQ-----------T-TSNLCFGGPEGRTLYMTV-----STEFWSIETNVRGLE 290 (296)
T ss_dssp --------TEEEEECTT-SCEEEEEECSS-----------C-CCEEEEESTTSCEEEEEE-----TTEEEEEECSCCBCC
T ss_pred --------CeEEEECCC-CCEEEEEECCC-----------C-ceeEEEECCCCCEEEEEc-----CCeEEEEEccccccc
Confidence 268888886 44433322221 1 223567 58888888775 247999998776544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=109.94 Aligned_cols=257 Identities=11% Similarity=0.052 Sum_probs=151.5
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+||+.+ ++...... .....+...+|+||+ .|+.. ...+.|.++++.+++..........
T Consensus 141 dg~i~vwd~~~----~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~----------s~dg~i~vwd~~~~~~~~~~~~h~~ 204 (464)
T 3v7d_B 141 DKMIRVYDSIN----KKFLLQLS-GHDGGVWALKYAHGG-ILVSG----------STDRTVRVWDIKKGCCTHVFEGHNS 204 (464)
T ss_dssp TSCEEEEETTT----TEEEEEEC-CCSSCEEEEEECSTT-EEEEE----------ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcEEEEECCC----CcEEEEEe-CCCcCEEEEEEcCCC-EEEEE----------eCCCCEEEEECCCCcEEEEECCCCC
Confidence 45799999988 76554321 233368899999999 55553 3346788889988875554332221
Q ss_pred cccceeeeeEEe--cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~~~~~~~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+..++|+ |+++.|+..+.++ .|.+
T Consensus 205 ----~v~~l~~~~~~~~~~l~s~s~d~-------------------------------------------------~i~v 231 (464)
T 3v7d_B 205 ----TVRCLDIVEYKNIKYIVTGSRDN-------------------------------------------------TLHV 231 (464)
T ss_dssp ----CEEEEEEEESSSCEEEEEEETTS-------------------------------------------------CEEE
T ss_pred ----ccEEEEEecCCCCCEEEEEcCCC-------------------------------------------------cEEE
Confidence 36677787 5788888775432 2223
Q ss_pred EcC-CCC------------------------ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEe
Q 004475 162 GSL-DGT------------------------AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (751)
Q Consensus 162 ~~~-~G~------------------------~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d 215 (751)
+++ +++ ...+..+ ..+ ..++++|++|+....+ ..+.+||
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d-------------~~i~vwd 296 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYD-------------NTLIVWD 296 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETT-------------SCEEEEE
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCC-------------CeEEEEE
Confidence 333 111 1111111 222 2357889888876543 3588999
Q ss_pred CCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE
Q 004475 216 TDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (751)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 295 (751)
+.+++...... .....+..+.|+|||+. ++..+ ..+.|+++++.. +.....+.
T Consensus 297 ~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~-l~sg~------------~dg~i~vwd~~~--~~~~~~~~ 349 (464)
T 3v7d_B 297 VAQMKCLYILS------------GHTDRIYSTIYDHERKR-CISAS------------MDTTIRIWDLEN--GELMYTLQ 349 (464)
T ss_dssp TTTTEEEEEEC------------CCSSCEEEEEEETTTTE-EEEEE------------TTSCEEEEETTT--TEEEEEEC
T ss_pred CCCCcEEEEec------------CCCCCEEEEEEcCCCCE-EEEEe------------CCCcEEEEECCC--CcEEEEEe
Confidence 98765432211 12234568999999998 55543 235788888751 22233343
Q ss_pred eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 296 KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 296 ~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
.....+. +.|+ ++.|+..+. ...|.+.++.+. ....... .... ....+|++||+.|+..+ +
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~----dg~v~vwd~~~~--~~~~~~~-~~~~------~~~~~~~~~~~~l~~~~-d-- 411 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAA----DGSIRGWDANDY--SRKFSYH-HTNL------SAITTFYVSDNILVSGS-E-- 411 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEET----TSEEEEEETTTC--CEEEEEE-CTTC------CCEEEEEECSSEEEEEE-T--
T ss_pred CCCCcEEEEEEc--CCEEEEEeC----CCcEEEEECCCC--ceeeeec-CCCC------ccEEEEEeCCCEEEEec-C--
Confidence 4455566 7776 566665542 245666777664 2122111 1111 11267999999887766 1
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCceeE
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 408 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 408 (751)
..|.+||+.+|+...
T Consensus 412 -------------------g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 -------------------NQFNIYNLRSGKLVH 426 (464)
T ss_dssp -------------------TEEEEEETTTCCEEE
T ss_pred -------------------CeEEEEECCCCcEEe
Confidence 278999999887643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-08 Score=106.07 Aligned_cols=314 Identities=9% Similarity=-0.018 Sum_probs=153.7
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 119 (751)
||++++ |+.+.. ........|+++|+++++......... .- .+++||||++|+..........
T Consensus 13 ~~~~~~-yv~~~~---~~~~~d~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spdg~~lyv~~~~~~~~~------- 75 (361)
T 2oiz_A 13 PQENRI-YVMDSV---FMHLTESRVHVYDYTNGKFLGMVPTAF-----NG-HVQVSNDGKKIYTMTTYHERIT------- 75 (361)
T ss_dssp CGGGEE-EEEECC---GGGGGGCEEEEEETTTCCEEEEEECCE-----EE-EEEECTTSSEEEEEEEEETTSS-------
T ss_pred CCCCEE-EEECCC---CCccccCeEEEEECCCCeEEEEecCCC-----CC-ceEECCCCCEEEEEEecccccc-------
Confidence 578775 544311 011224689999998887543222111 12 7899999999988743100000
Q ss_pred CCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecC--C-----CceEEeeeeCCCCceEE
Q 004475 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG--T-----PAVYTAVEPSPDQKYVL 190 (751)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt--~-----~~~~~~~~~SpDG~~i~ 190 (751)
.+ .....|.++|+ +++. ..+. . ......+++||||++|+
T Consensus 76 ---------~g-----------------------~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 76 ---------RG-----------------------KRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp ---------SS-----------------------CEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred ---------cC-----------------------CCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 00 01145778888 5533 2221 1 12345789999999999
Q ss_pred EEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
+..... ...+.+||+++++...- ...+.... ..+... ...+-++.++||+. +++....++ ...
T Consensus 124 v~n~~~-----------~~~v~v~d~~~~~~~~~~i~~~~~~~--v~~~p~-~~~~~~~~~~dg~~-~~v~~~~~g-~~~ 187 (361)
T 2oiz_A 124 LQNASP-----------ATSIGIVDVAKGDYVEDVTAAAGCWS--VIPQPN-RPRSFMTICGDGGL-LTINLGEDG-KVA 187 (361)
T ss_dssp EEEESS-----------SEEEEEEETTTTEEEEEEGGGTTEEE--EEECTT-SSSEEEEEETTSSE-EEEEECTTS-SEE
T ss_pred EECCCC-----------CCeEEEEECCCCcEEEEEecCCCcce--eEEcCC-CCeeEEEECCCCcE-EEEEECCCC-cEe
Confidence 875421 24688999987654321 11111100 000000 01123455666654 333211000 000
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-----
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV----- 344 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~----- 344 (751)
.. . ....+++.. ........++||+.+++.+. ...++.++..+. ....+....
T Consensus 188 -~~-~-~~~~~~~~~-------------~~~~~~~~~~~g~~~~~~~~----~~~v~v~d~~~~--~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 188 -SQ-S-RSKQMFSVK-------------DDPIFIAPALDKDKAHFVSY----YGNVYSADFSGD--EVKVDGPWSLLNDE 245 (361)
T ss_dssp -EE-E-ECCCCSCTT-------------TSCBCSCCEECSSEEEEEBT----TSEEEEEECSSS--SCEEEEEEESCCHH
T ss_pred -ee-c-cccceEcCC-------------CCceEEEecccCCEEEEEeC----CCeEEEEEecCC--CceecccccccCcc
Confidence 00 0 000011110 00011234788888777652 246888888663 212111100
Q ss_pred -cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 345 -FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 345 -~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
....+...+...++++|||+.++...... ..++. .......|++||+++++...-....
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~---------~~~~~-~~~~~~~v~viD~~t~~~v~~i~~~---------- 305 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPD---------GKEGT-HKFPAAEIWVMDTKTKQRVARIPGR---------- 305 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESS---------CCTTC-TTCCCSEEEEEETTTTEEEEEEECT----------
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccC---------CCccc-ccCCCceEEEEECCCCcEEEEEecC----------
Confidence 00000000111267899998877655200 00000 1112348999999988764433221
Q ss_pred eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 424 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
. +..++|||||++|+.+ . . ..+.++|+.+++++.+..
T Consensus 306 --~-p~~ia~spdg~~l~v~-n---~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 306 --D-ALSMTIDQQRNLMLTL-D---G-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp --T-CCEEEEETTTTEEEEE-C---S-SCEEEEECSSSSCEEEEE
T ss_pred --C-eeEEEECCCCCEEEEe-C---C-CeEEEEECCCCcceeeEE
Confidence 1 4457999999966543 2 2 679999999984444433
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-11 Score=119.34 Aligned_cols=212 Identities=10% Similarity=-0.082 Sum_probs=120.2
Q ss_pred ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCC
Q 004475 492 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 571 (751)
Q Consensus 492 ~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~ 571 (751)
..+...++.|..+..+ ..+.||++||.+.. ... .|...+...|.++||.|+.+ +++|+|.+
T Consensus 14 ~~l~~~i~~p~~~~~~---~~~~VvllHG~~~~-----------~~~--~~~~~l~~~L~~~G~~v~~~---d~~g~g~~ 74 (317)
T 1tca_A 14 SVLDAGLTCQGASPSS---VSKPILLVPGTGTT-----------GPQ--SFDSNWIPLSTQLGYTPCWI---SPPPFMLN 74 (317)
T ss_dssp HHHHHTEEETTBCTTS---CSSEEEEECCTTCC-----------HHH--HHTTTHHHHHHTTTCEEEEE---CCTTTTCS
T ss_pred HHHhheeeCCCCCCCC---CCCeEEEECCCCCC-----------cch--hhHHHHHHHHHhCCCEEEEE---CCCCCCCC
Confidence 3455667777654322 24679999996411 111 01113456777889999994 45566543
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCCCCCCCcc-----
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYNKTLTPF----- 643 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~~d~~~~~~----- 643 (751)
. .....+++.+.++++.+... ..++.++||||||.++..++...| ++++++|++++.........
T Consensus 75 ~-----~~~~~~~l~~~i~~~~~~~g--~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~~ 147 (317)
T 1tca_A 75 D-----TQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDAL 147 (317)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHT
T ss_pred c-----HHHHHHHHHHHHHHHHHHhC--CCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhhh
Confidence 1 23446777888888876532 368999999999999999888765 78999999998754221100
Q ss_pred C-cccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHH--HHHHHHHHHhCCCcEEEEEe-------C
Q 004475 644 G-FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQ--AERFFDALKGHGALSRLVLL-------P 713 (751)
Q Consensus 644 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~--~~~~~~~l~~~~~~~~~~~~-------~ 713 (751)
. .................... .......+|+++++|+.|.+|+ +.. +......+.. . +...+ +
T Consensus 148 ~~~~~~~~~~~~~s~f~~~L~~-~~~~~~~vp~~~i~g~~D~iV~--p~~~~g~~~~~~l~~--a--~~~~~~~~~~~~~ 220 (317)
T 1tca_A 148 AVSAPSVWQQTTGSALTTALRN-AGGLTQIVPTTNLYSATDEIVQ--PQVSNSPLDSSYLFN--G--KNVQAQAVCGPLF 220 (317)
T ss_dssp TCBCHHHHHTBTTCHHHHHHHH-TTTTBCSSCEEEEECTTCSSSC--CCCSSSTTSTTCCBT--S--EEEEHHHHHCTTC
T ss_pred hhcCchHHhhCcCcHHHHHHHh-cCCCCCCCCEEEEEeCCCCeEC--CccccccchhhhccC--C--ccEEeeeccCCCC
Confidence 0 00000000000000111000 0001246899999999999987 443 1111111211 1 22222 5
Q ss_pred CCCCcCCccccHHHHHHHHHHHHHH
Q 004475 714 FEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 714 ~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+.+|.... .+. ..+..+++||+.
T Consensus 221 ~~gH~~~l-~~p-~~~~~v~~~L~~ 243 (317)
T 1tca_A 221 VIDHAGSL-TSQ-FSYVVGRSALRS 243 (317)
T ss_dssp CCCTTHHH-HBH-HHHHHHHHHHHC
T ss_pred ccCccccc-CCH-HHHHHHHHHhcC
Confidence 78898643 222 456788999986
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-08 Score=102.78 Aligned_cols=223 Identities=8% Similarity=-0.050 Sum_probs=125.2
Q ss_pred eEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
..|++++. +++.+.+.....+..++++|||+ |++.. . ..|+++|.++++.+.+...... .+
T Consensus 35 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~-~-------------~~l~~~d~~~g~~~~~~~~~~~--~~- 96 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI-G-------------TKFCALNWKEQSAVVLATVDND--KK- 96 (297)
T ss_dssp TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE-T-------------TEEEEEETTTTEEEEEEECCTT--CS-
T ss_pred CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE-C-------------CeEEEEECCCCcEEEEEecCCC--CC-
Confidence 47899998 45555554446677899999999 44442 1 2588999988877766443211 00
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
...+..+.++|||+ +++................+.||.++.+ + ....+........ ++|+|||+.|++
T Consensus 97 -----~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g-~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 97 -----NNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPD---H-HVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp -----SEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTT---S-CEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred -----CCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECC---C-CEEEEeeccccccceEEcCCCCEEEE
Confidence 11245789999998 4554322111100011233578888864 3 3333333333334 899999998877
Q ss_pred eeeecccceeEEEecCC--CCCCc-ceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCC
Q 004475 315 ETWYKTSQTRTWLVCPG--SKDVA-PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 391 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~--~~~~~-~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (751)
... ....|++++.+ ++... .+.+....... . ..-.+++++||+ |++....
T Consensus 166 ~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~--~--~p~g~~~d~~G~-lwva~~~------------------- 218 (297)
T 3g4e_A 166 IDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE--Q--IPDGMCIDAEGK-LWVACYN------------------- 218 (297)
T ss_dssp EEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG--C--EEEEEEEBTTSC-EEEEEET-------------------
T ss_pred ecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC--C--CCCeeEECCCCC-EEEEEcC-------------------
Confidence 652 23467777653 32111 11222111100 0 000167888885 4444321
Q ss_pred CCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeec-cCCCEEEEEEecC
Q 004475 392 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN-LNQLKILTSKESK 447 (751)
Q Consensus 392 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~ 447 (751)
...|++||.++|+.......... .+ ..++|+ ||+++|+++....
T Consensus 219 -~~~v~~~d~~tG~~~~~i~~p~~----~~-------t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVKLPVD----KT-------TSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEECSSS----BE-------EEEEEESGGGCEEEEEEBCT
T ss_pred -CCEEEEEcCCCceEEEEEECCCC----Cc-------eEEEEeCCCCCEEEEEcCCc
Confidence 12689999988876555443311 12 225787 8999998887543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=124.03 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=136.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecC--CcEEEEeecCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~ 109 (751)
.+...+|||||++|+... ..+.|.++++.++..+.+.....+ ...+..++|+|+ |+.|+..+.+
T Consensus 11 ~V~~l~~s~dg~~latg~----------~dg~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~D-- 76 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD-- 76 (753)
T ss_dssp CEEEECCCSSSCCEEEEE----------TTTEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETT--
T ss_pred eeEEEEECCCCCeEEEEE----------CCCcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCC--
Confidence 588899999999998863 235666667664433332211211 114778999998 8888887543
Q ss_pred CCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC---ceecCCC-ceEEeeeeCC
Q 004475 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVEPSP 184 (751)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~---~~~lt~~-~~~~~~~~Sp 184 (751)
+.|.++++ +++ ...+..+ ..+..++|+|
T Consensus 77 -----------------------------------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 77 -----------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp -----------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred -----------------------------------------------CeEEEEECCCCcccccccccCCCCCeEEEEECC
Confidence 35677777 553 3334444 7788999999
Q ss_pred C--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec-----------
Q 004475 185 D--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA----------- 251 (751)
Q Consensus 185 D--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp----------- 251 (751)
+ |+.|+....+ ..+.+||+.++...... .+......+..+.|+|
T Consensus 110 ~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~----------~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 110 HEYGPLLLVASSD-------------GKVSVVEFKENGTTSPI----------IIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp GGGCSEEEEEETT-------------SEEEEEECCSSSCCCCE----------EEECCSSCEEEEEECCCC---------
T ss_pred CCCCCEEEEEeCC-------------CcEEEEEeecCCCccee----------EeecCCCceEEEEecCccccccccccc
Confidence 9 8888876543 36889998765321110 0111223466889999
Q ss_pred --CCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc----eEeEeeceeEE-EEEecC---CceEEEeeeeccc
Q 004475 252 --DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP----EILHKLDLRFS-VSWCDD---SLALVNETWYKTS 321 (751)
Q Consensus 252 --dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~-~~~spd---g~~l~~~~~~~~~ 321 (751)
||+. ++... ..+.|.++++.. +... ..+......+. +.|+|+ |+.|+.+.. .
T Consensus 167 ~~d~~~-l~sgs------------~dg~I~iwd~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~--D- 228 (753)
T 3jro_A 167 TKESRK-FVTGG------------ADNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--D- 228 (753)
T ss_dssp CGGGCC-EEEEE------------TTSCEEEEEEET--TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES--S-
T ss_pred CCCCCE-EEEEE------------CCCeEEEEeccC--CcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec--C-
Confidence 5777 55543 235788887741 1111 12223455677 999999 787776552 2
Q ss_pred ceeEEEecCCCCCCcc-eeeeec--ccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 322 QTRTWLVCPGSKDVAP-RVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~~-~~l~~~--~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..|.+.++.++.... ..+... ....+.. ++|+|||+.|+..+
T Consensus 229 -g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~------l~~spdg~~l~s~s 273 (753)
T 3jro_A 229 -RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR------ASWSLSGNVLALSG 273 (753)
T ss_dssp -SCEEEEEESSSSSCCBCCBSSSSCCSSCCCC------EEECTTTCCEEEEC
T ss_pred -CEEEEecCCCCCCcceeEEeccCCCCCceEE------EEEcCCCCEEEEEc
Confidence 234444544431111 111111 1111222 78999999988877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=104.23 Aligned_cols=280 Identities=11% Similarity=-0.020 Sum_probs=148.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCC-C
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESP-D 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~-~ 82 (751)
..|+++|+.+ ++..... +.+... ..++||||++++...........++....|.++|+++++... +.-.. .
T Consensus 59 ~~V~ViD~~t----~~v~~~I--~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEA----GRVIGMI--DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTT----TEEEEEE--EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCC----CeEEEEE--ECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 4688999887 7765433 333333 499999999987764310000000123679999999987433 31111 0
Q ss_pred cc-ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 IC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
+. ....-..+++||||++|++.... ....|.+
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~~-----------------------------------------------~~~~VsV 164 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQFS-----------------------------------------------PAPAVGV 164 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECS-----------------------------------------------SSCEEEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEcC-----------------------------------------------CCCeEEE
Confidence 00 00012467999999999887321 0146888
Q ss_pred EcC-CCC-ceecCCCc--eE------EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 162 GSL-DGT-AKDFGTPA--VY------TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 162 ~~~-~G~-~~~lt~~~--~~------~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
+|+ +++ ...+.-++ .+ ..++.++||+.+++...... .+ . +..+ . +. ...
T Consensus 165 ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g------------~v-~-~~~~---~-~~---~~~ 223 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG------------TP-E-ITHT---E-VF---HPE 223 (386)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS------------CC-E-EEEC---C-CC---SCT
T ss_pred EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCC------------eE-E-Eeec---c-ee---ccc
Confidence 888 663 23332211 11 12367778876666532210 11 0 0000 0 00 000
Q ss_pred CCCCccCCccCCCceeeee-cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------e
Q 004475 232 DIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------L 297 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~s-pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~ 297 (751)
..+. .....|. +||+ ++|.+ ..+++|++++. +...+.+.. .
T Consensus 224 ~~~~--------~~~~~~~~~dG~--~~~vs------------~~g~V~v~d~~---~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 224 DEFL--------INHPAYSQKAGR--LVWPT------------YTGKIHQIDLS---SGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp TSCB--------CSCCEEETTTTE--EEEEB------------TTSEEEEEECT---TSSCEECCCEESSCHHHHHTTEE
T ss_pred cccc--------cccceeEcCCCc--EEEEe------------CCCEEEEEECC---CCcceeecceecccccccccccc
Confidence 0010 0123664 7875 45544 23579999885 333222211 1
Q ss_pred ceeEE-EEEecCCceEEEeeeec------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 298 DLRFS-VSWCDDSLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.+... ++++|++++|+...... ....+||++|+.+.+. .+.+.-.. ..+. +++|+||+.++|..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~vg~--~~~~------lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMGH--EIDS------INVSQDEKPLLYAL 349 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEEE--EECE------EEECSSSSCEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEECCC--Ccce------EEECCCCCeEEEEE
Confidence 22233 67899999988765321 2346899999998621 22222111 1222 88999998555555
Q ss_pred eecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 371 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
.. ....|.++|..+++...-+..
T Consensus 350 n~-------------------~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 350 ST-------------------GDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEEECC
T ss_pred cC-------------------CCCeEEEEECCCCcEEEEecC
Confidence 22 233788999999887554443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=106.19 Aligned_cols=230 Identities=9% Similarity=0.003 Sum_probs=137.2
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
..+...+|||||+.||... +. .+.++++++++........ .+..+.|+++++.+++....
T Consensus 20 ~~V~~v~fs~dg~~la~g~---------~~--~~~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--- 79 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILST---------LK--SFEIYNVHPVAHIMSQEMR------HLSKVRMLHRTNYVAFVTGV--- 79 (355)
T ss_dssp CCCCEEEECTTSSEEEEEC---------SS--EEEEEEETTEEEEEEEECS------CCCEEEECTTSSEEEEECSS---
T ss_pred CceEEEEECCCCCEEEEEc---------CC--EEEEEecCCcceeeeeecC------CeEEEEEcCCCCEEEEEECC---
Confidence 3688999999999998742 22 2456666665443322111 24567899999988776321
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCCceEEeeeeCCCCce
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~ 188 (751)
...|.++|+ +|+ ...+.....+..+.|++++.
T Consensus 80 ---------------------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~- 113 (355)
T 3vu4_A 80 ---------------------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFI- 113 (355)
T ss_dssp ---------------------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEE-
T ss_pred ---------------------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEE-
Confidence 036778888 663 33444346778899998753
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCc-e-eeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-L-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++.. ...+++||+.+. + ...+.. ....+++++ +. +++.+..
T Consensus 114 -~~~~--------------~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~s~--~~-la~~sg~--- 156 (355)
T 3vu4_A 114 -VVSY--------------GDVISVFKFGNPWKRITDDIR----------------FGGVCEFSN--GL-LVYSNEF--- 156 (355)
T ss_dssp -EEEE--------------TTEEEEEESSTTCCBSSCCEE----------------EEEEEEEET--TE-EEEEESS---
T ss_pred -EEEE--------------cCEEEEEECCCCceeeEEecc----------------CCceEEEEc--cE-EEEeCCC---
Confidence 3322 235889999865 2 221111 011346666 33 5554211
Q ss_pred CCccccCcccceeeccCCCCCCCC-----------------ceEeEeeceeEE-EEEecCCceEEEeeeeccccee-EEE
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEK-----------------PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTR-TWL 327 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~-l~~ 327 (751)
..+.|.++++. .+. ...+......+. ++|+|||+.|+.++. ... |.+
T Consensus 157 -------~~g~v~iwd~~---~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~----d~~~v~i 222 (355)
T 3vu4_A 157 -------NLGQIHITKLQ---SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ----DGTIIRV 222 (355)
T ss_dssp -------CTTCEEEEECC---C------------------CCEEECCCSSCEEEEEECTTSSEEEEEET----TCSEEEE
T ss_pred -------cCcEEEEEECC---CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC----CCCEEEE
Confidence 23578888875 211 344555666777 999999998887662 234 666
Q ss_pred ecCCCCCCcceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 328 VCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
.++.++ .....+... ....+.. ++|||||++|+..+.+ ..|.+||+..+.
T Consensus 223 wd~~~~-~~~~~~~~g~h~~~v~~------~~~s~~~~~l~s~s~d---------------------~~v~iw~~~~~~ 273 (355)
T 3vu4_A 223 FKTEDG-VLVREFRRGLDRADVVD------MKWSTDGSKLAVVSDK---------------------WTLHVFEIFNDQ 273 (355)
T ss_dssp EETTTC-CEEEEEECTTCCSCEEE------EEECTTSCEEEEEETT---------------------CEEEEEESSCCS
T ss_pred EECCCC-cEEEEEEcCCCCCcEEE------EEECCCCCEEEEEECC---------------------CEEEEEEccCCC
Confidence 677664 222222211 2233333 8899999999888732 267888886543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-09 Score=105.93 Aligned_cols=245 Identities=9% Similarity=-0.007 Sum_probs=138.6
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCC
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 98 (751)
.+.+.|.. .......|.|+|||+.|+|+. .....|++++. +|+.+.+..... ....++|+|||
T Consensus 35 ~~~~~l~~--~~~~~egp~~~~~g~~l~~~d---------~~~~~i~~~~~-~g~~~~~~~~~~-----~~~gl~~d~dG 97 (305)
T 3dr2_A 35 ARLLTLYD--QATWSEGPAWWEAQRTLVWSD---------LVGRRVLGWRE-DGTVDVLLDATA-----FTNGNAVDAQQ 97 (305)
T ss_dssp CCCEEEEC--CCSSEEEEEEEGGGTEEEEEE---------TTTTEEEEEET-TSCEEEEEESCS-----CEEEEEECTTS
T ss_pred CceEEEec--CCcCccCCeEeCCCCEEEEEE---------CCCCEEEEEeC-CCCEEEEeCCCC-----ccceeeECCCC
Confidence 44555552 223456899999999999975 34467898987 555555543332 25678999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCCC----
Q 004475 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP---- 174 (751)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~~---- 174 (751)
+.++.. .. ...|++++.+|+.+.+...
T Consensus 98 ~l~v~~-~~------------------------------------------------~~~v~~~~~~g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 98 RLVHCE-HG------------------------------------------------RRAITRSDADGQAHLLVGRYAGK 128 (305)
T ss_dssp CEEEEE-TT------------------------------------------------TTEEEEECTTSCEEEEECEETTE
T ss_pred CEEEEE-CC------------------------------------------------CCEEEEECCCCCEEEEEeccCCC
Confidence 855443 10 0367777777765555332
Q ss_pred --ceEEeeeeCCCCceEEEEEecCC--ccc---ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCcee
Q 004475 175 --AVYTAVEPSPDQKYVLITSMHRP--YSY---KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (751)
Q Consensus 175 --~~~~~~~~SpDG~~i~~~~~~~~--~~~---~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (751)
.....++++|||+ |+++...-. ..+ ..........||+++.++++.+.+. .. .....+
T Consensus 129 ~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~------------~~p~gl 193 (305)
T 3dr2_A 129 RLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL------------DHPNGL 193 (305)
T ss_dssp ECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE------------SSEEEE
T ss_pred ccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC------------CCCcce
Confidence 1234689999997 555421000 000 0000011357999999877666553 10 123478
Q ss_pred eeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc---eEeEe-eceeEE-EEEecCCceEEEeeeecccc
Q 004475 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHK-LDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~l~~-~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+|+|||+. |+++..... ......|++++++ +... +.+.. ..+... +.++++|+ |+.+. .
T Consensus 194 ~~spdg~~-lyv~~~~~~------~~~~~~i~~~~~~---~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-----~ 257 (305)
T 3dr2_A 194 AFSPDEQT-LYVSQTPEQ------GHGSVEITAFAWR---DGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-----G 257 (305)
T ss_dssp EECTTSSE-EEEEECCC---------CCCEEEEEEEE---TTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC-----S
T ss_pred EEcCCCCE-EEEEecCCc------CCCCCEEEEEEec---CCCccCCeEEEECCCCCCCeEEECCCCC-EEEec-----C
Confidence 99999998 666542100 0012468888774 2111 11111 122223 78889998 54433 1
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..|++++.++. ....+.... .... ++|++|++.|++.+
T Consensus 258 ~gv~~~~~~g~--~~~~~~~~~--~~~~------~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 258 TGVCVFDSDGQ--LLGHIPTPG--TASN------CTFDQAQQRLFITG 295 (305)
T ss_dssp SEEEEECTTSC--EEEEEECSS--CCCE------EEECTTSCEEEEEE
T ss_pred CcEEEECCCCC--EEEEEECCC--ceeE------EEEeCCCCEEEEEc
Confidence 24889998663 222222111 1111 77999999888877
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-09 Score=109.50 Aligned_cols=276 Identities=11% Similarity=-0.031 Sum_probs=147.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCC-CC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFES-PD 82 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~-~~ 82 (751)
..|.++|+.+ ++...-. +-+..- ...+||||++|+...........+.....|.++|+.+++... +.-. ..
T Consensus 99 ~~VsVID~~t----~~vv~~I--~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGST----GRILGMT--DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTT----TEEEEEE--EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCC----CEEEEEE--ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 4788999888 7666433 333334 899999999997764210000001234689999999887533 3211 10
Q ss_pred cc-ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 IC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. .......+++||||++|+..... ....|.+
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~-----------------------------------------------~~~~VsV 204 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFS-----------------------------------------------PAPAVGV 204 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECS-----------------------------------------------SSCEEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEecC-----------------------------------------------CCCeEEE
Confidence 00 00012467999999999987321 0147888
Q ss_pred EcC-CCCc-eecCCCce--------EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC-
Q 004475 162 GSL-DGTA-KDFGTPAV--------YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA- 230 (751)
Q Consensus 162 ~~~-~G~~-~~lt~~~~--------~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~- 230 (751)
+|+ +++. .++.-++. ...+.+++||+.+++.. .+++..........
T Consensus 205 ID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~-----------------------~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 205 VDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF-----------------------ADGETKVTNTEVFHT 261 (426)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC-----------------------CTTCCEEEECCCCSC
T ss_pred EECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC-----------------------CCCcEEEEeeeeecc
Confidence 888 6533 33332211 11244556666555543 21111100000000
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-------------ee
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------------KL 297 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------------~~ 297 (751)
...| -...+.+++||++ +++.. ..+.++++|.. +.....+. ..
T Consensus 262 ~~~p--------~~~~~~~~~dg~~-~~~~s------------~~g~V~ViD~~---~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 262 EDEL--------LINHPAFSLRSGR-LVWPT------------YTGKIFQADLT---AEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TTSC--------BCSCCEECTTTCE-EEEEB------------TTSEEEEEEEC---SSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCc--------eeeEeeecCCCCE-EEEEe------------CCCcEEEEecc---CCceEEeeeeeeccccccccccc
Confidence 0000 0013578999998 66654 12468888874 22211111 01
Q ss_pred ceeEE-EEEecCCceEEEeeeec------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 298 DLRFS-VSWCDDSLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
..... ..++|||++++...... ....+|+++|+.+. .....+.-... -+. +.|+|||+.++|..
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~~--P~g------ia~spDg~~~lyv~ 388 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-ERINKIELGHE--IDS------INVSQDAEPLLYAL 388 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEEE--ECE------EEECCSSSCEEEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-eEEEEEECCCC--cCe------EEEccCCCEEEEEE
Confidence 12222 57899999887654221 12468999999885 22222221111 111 88999999555555
Q ss_pred eecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 371 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
+. ....|.++|+.+++...-
T Consensus 389 n~-------------------~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 389 SA-------------------GTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEE
T ss_pred cC-------------------CCCeEEEEECCCCCEEEE
Confidence 31 234799999999887544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-09 Score=111.70 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=114.5
Q ss_pred ccccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCC---CCee--eccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET---GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 31 ~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~---g~~~--~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
..+...+||| ||++||..+ ..+.|.++++.+ +... .++... ...+..++|+||++.|+..
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGS----------DQGVIKIWNLKEIIVGEVYSSSLTYDC----SSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEE----------TTSEEEEEEHHHHHTTCCCSCSEEEEC----SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEec----------CCceEEEeECcccccCcccceeeeccC----CCCEEEEEEeCCCCEEEEE
Confidence 3688999999 999998864 335777778766 4311 111111 1247889999999999887
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC----CCCceecC--------
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGTAKDFG-------- 172 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~G~~~~lt-------- 172 (751)
+.+ ..|.++++ +|+..+..
T Consensus 130 s~d-------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 130 SKD-------------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp ETT-------------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred eCC-------------------------------------------------CEEEEEEeccccCCceeeccccceeEEE
Confidence 543 23333333 23221111
Q ss_pred ------CCceEEee--eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCC
Q 004475 173 ------TPAVYTAV--EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (751)
Q Consensus 173 ------~~~~~~~~--~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (751)
....+..+ .++||++.|+....+ ..|.+||+.+++.......+ .....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~----------~h~~~v 217 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-------------SRVIIFDIRTLERLQIIENS----------PRHGAV 217 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETT-------------SEEEEEETTTCCEEEEEECC----------GGGCCE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCCCeeeEEEccC----------CCCCce
Confidence 11222222 377888888776543 46899999876543221111 012346
Q ss_pred ceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeE-eeceeEE-E----EEecCCceEEEeee
Q 004475 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILH-KLDLRFS-V----SWCDDSLALVNETW 317 (751)
Q Consensus 245 ~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~-~~~~~~~-~----~~spdg~~l~~~~~ 317 (751)
..++|+|||+. ++..+ ..+.|.++++. .+.. ..+. .....+. + .|+||++.|+.+.
T Consensus 218 ~~~~~s~~~~~-l~s~~------------~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~- 280 (437)
T 3gre_A 218 SSICIDEECCV-LILGT------------TRGIIDIWDIR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS- 280 (437)
T ss_dssp EEEEECTTSCE-EEEEE------------TTSCEEEEETT---TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES-
T ss_pred EEEEECCCCCE-EEEEc------------CCCeEEEEEcC---CccEEEEEecCCCCceEEEEeccccCCCccEEEEEc-
Confidence 68999999997 55543 23578888885 2222 2222 2233455 6 4456777777654
Q ss_pred ecccceeEEEecCCCC
Q 004475 318 YKTSQTRTWLVCPGSK 333 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~ 333 (751)
....|.+.++.++
T Consensus 281 ---~dg~i~iwd~~~~ 293 (437)
T 3gre_A 281 ---SKTFLTIWNFVKG 293 (437)
T ss_dssp ---TTEEEEEEETTTT
T ss_pred ---CCCcEEEEEcCCC
Confidence 2346777777764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-08 Score=101.36 Aligned_cols=261 Identities=9% Similarity=0.008 Sum_probs=145.7
Q ss_pred CCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchh
Q 004475 70 ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (751)
Q Consensus 70 ~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (751)
.+.+.++|+.+.. ....++|+|||+.|++....
T Consensus 33 ~~~~~~~l~~~~~-----~~egp~~~~~g~~l~~~d~~------------------------------------------ 65 (305)
T 3dr2_A 33 GDARLLTLYDQAT-----WSEGPAWWEAQRTLVWSDLV------------------------------------------ 65 (305)
T ss_dssp TTCCCEEEECCCS-----SEEEEEEEGGGTEEEEEETT------------------------------------------
T ss_pred CCCceEEEecCCc-----CccCCeEeCCCCEEEEEECC------------------------------------------
Confidence 3556777765544 24688999999988887321
Q ss_pred hhhhheeeEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC
Q 004475 150 LFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (751)
Q Consensus 150 ~~~~~~~~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (751)
...|++++.+|+.+.+... .....++++|||+.+ +.... ...|++++.+ ++.+.+....
T Consensus 66 ------~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~-v~~~~------------~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 66 ------GRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLV-HCEHG------------RRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp ------TTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEE-EEETT------------TTEEEEECTT-SCEEEEECEE
T ss_pred ------CCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEE-EEECC------------CCEEEEECCC-CCEEEEEecc
Confidence 1468888887766655544 566789999999844 43222 2358888887 4444443211
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC------CCccccCcccceeeccCCCCCCCCceEeEeeceeEE
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG------DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS 302 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 302 (751)
.. . ....+..+.++|||+ |+++...-+. ...........||+++.+ ++..+.+. ......
T Consensus 126 ~~--~------~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~---~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 126 AG--K------RLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD---GSPLQRMA-DLDHPN 191 (305)
T ss_dssp TT--E------ECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS---SCCCEEEE-EESSEE
T ss_pred CC--C------ccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC---CCcEEEEe-cCCCCc
Confidence 00 0 011245789999997 5664211000 000001123579999874 44555554 333334
Q ss_pred -EEEecCCceEEEeeeec--ccceeEEEecCCCCCCc-ceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcce
Q 004475 303 -VSWCDDSLALVNETWYK--TSQTRTWLVCPGSKDVA-PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 378 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~~--~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 378 (751)
++|+|||+.|++..... .....|++++.+++... .+.+...... ..-.+++++||+ |++..
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~------~pdgi~~d~~G~-lwv~~-------- 256 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG------LPDGFCVDRGGW-LWSSS-------- 256 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS------CCCSEEECTTSC-EEECC--------
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC------CCCeEEECCCCC-EEEec--------
Confidence 89999999887765321 01257888887653100 0111111000 011166788887 43333
Q ss_pred EEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 379 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
...|++|+.+ |+......... ....++|++|++.|+++.. ..||.+++
T Consensus 257 --------------~~gv~~~~~~-g~~~~~~~~~~------------~~~~~~f~~d~~~L~it~~-----~~l~~~~~ 304 (305)
T 3dr2_A 257 --------------GTGVCVFDSD-GQLLGHIPTPG------------TASNCTFDQAQQRLFITGG-----PCLWMLPL 304 (305)
T ss_dssp --------------SSEEEEECTT-SCEEEEEECSS------------CCCEEEECTTSCEEEEEET-----TEEEEEEC
T ss_pred --------------CCcEEEECCC-CCEEEEEECCC------------ceeEEEEeCCCCEEEEEcC-----CeEEEEEC
Confidence 1148888885 44333222211 1233678889998887752 36887764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=103.06 Aligned_cols=232 Identities=11% Similarity=0.085 Sum_probs=136.6
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..|.|+|+++.|+|+. .....|+++++++++.+.+... . .+..++|+|||+ |++...
T Consensus 16 Egp~w~~~~~~l~~~d---------~~~~~i~~~d~~~~~~~~~~~~-~-----~~~~i~~~~dG~-l~v~~~------- 72 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVD---------IPAKKVCRWDSFTKQVQRVTMD-A-----PVSSVALRQSGG-YVATIG------- 72 (297)
T ss_dssp EEEEEETTTTEEEEEE---------TTTTEEEEEETTTCCEEEEECS-S-----CEEEEEEBTTSS-EEEEET-------
T ss_pred cCCeEECCCCEEEEEE---------CCCCEEEEEECCCCcEEEEeCC-C-----ceEEEEECCCCC-EEEEEC-------
Confidence 4799999999999974 3457899999998876554322 2 357889999999 444321
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCC-----C-ceEEeeeeCCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-----P-AVYTAVEPSPDQ 186 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~-----~-~~~~~~~~SpDG 186 (751)
..|++++. +|+.+.+.. . .....++++|||
T Consensus 73 -------------------------------------------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG 109 (297)
T 3g4e_A 73 -------------------------------------------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG 109 (297)
T ss_dssp -------------------------------------------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS
T ss_pred -------------------------------------------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC
Confidence 36788888 565544422 1 345689999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
+ |++........... .......||+++.++.. ..+... ......++|+|||+. ++++..
T Consensus 110 ~-l~~~~~~~~~~~~~-~~~~~~~l~~~d~~g~~-~~~~~~-------------~~~pngi~~spdg~~-lyv~~~---- 168 (297)
T 3g4e_A 110 R-YFAGTMAEETAPAV-LERHQGALYSLFPDHHV-KKYFDQ-------------VDISNGLDWSLDHKI-FYYIDS---- 168 (297)
T ss_dssp C-EEEEEEECCSBTTB-CCTTCEEEEEECTTSCE-EEEEEE-------------ESBEEEEEECTTSCE-EEEEEG----
T ss_pred C-EEEecCCccccccc-ccCCCcEEEEEECCCCE-EEEeec-------------cccccceEEcCCCCE-EEEecC----
Confidence 8 55654332110000 00113578888887543 222111 012347899999998 666542
Q ss_pred CCccccCcccceeeccCCCCCCCC--ceEeEee---ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEK--PEILHKL---DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~~---~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
..+.|+++++++.++.. .+.+... .+... +.++++|+ |+.+.. ....|++++++++ +....
T Consensus 169 -------~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~---~~~~v~~~d~~tG--~~~~~ 235 (297)
T 3g4e_A 169 -------LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY---NGGRVIRLDPVTG--KRLQT 235 (297)
T ss_dssp -------GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE---TTTEEEEECTTTC--CEEEE
T ss_pred -------CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc---CCCEEEEEcCCCc--eEEEE
Confidence 23578888763222221 1222221 23344 88999996 544442 2246999999864 22222
Q ss_pred eecccccccCCCCCCCeeeC-CCCCEEEEeee
Q 004475 341 FDRVFENVYSDPGSPMMTRT-STGTNVIAKIK 371 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~s-pDG~~l~~~~~ 371 (751)
.......... ++|+ ||++.|++.+.
T Consensus 236 i~~p~~~~t~------~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTS------CCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEE------EEEESGGGCEEEEEEB
T ss_pred EECCCCCceE------EEEeCCCCCEEEEEcC
Confidence 2222111111 7788 89999888773
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=106.02 Aligned_cols=251 Identities=9% Similarity=0.051 Sum_probs=142.2
Q ss_pred cceeEEeecCCCCCCCCcccccCC-CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
...|.+|++.+ +.......+ .....+...+|||||++|+... ..+.|.++++.+++...+.....
T Consensus 63 dg~i~iw~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~ 128 (368)
T 3mmy_A 63 ANDVRCWEVQD----SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS----------CDKTAKMWDLSSNQAIQIAQHDA 128 (368)
T ss_dssp TSEEEEEEECT----TSCEEEEEEEECSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTTEEEEEEECSS
T ss_pred CCcEEEEEcCC----CCceeEEEeccccCCEEEEEECcCCCEEEEEc----------CCCcEEEEEcCCCCceeeccccC
Confidence 34689999976 333221111 1233688999999999999753 34688889999888776644333
Q ss_pred ccccceeeeeEE--ecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 83 ICLNAVFGSFVW--VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 83 ~~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.+..++| +|+|+.|+..+.+ ..|.
T Consensus 129 -----~v~~~~~~~~~~~~~l~~~~~d-------------------------------------------------g~i~ 154 (368)
T 3mmy_A 129 -----PVKTIHWIKAPNYSCVMTGSWD-------------------------------------------------KTLK 154 (368)
T ss_dssp -----CEEEEEEEECSSCEEEEEEETT-------------------------------------------------SEEE
T ss_pred -----ceEEEEEEeCCCCCEEEEccCC-------------------------------------------------CcEE
Confidence 4778899 8999988877442 4788
Q ss_pred EEcC-CCC-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 161 LGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 161 ~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
++|+ +++ ...+..+.....+.++++ .+++...+ ..+.+|+..............
T Consensus 155 vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~--------- 210 (368)
T 3mmy_A 155 FWDTRSSNPMMVLQLPERCYCADVIYP--MAVVATAE-------------RGLIVYQLENQPSEFRRIESP--------- 210 (368)
T ss_dssp EECSSCSSCSEEEECSSCEEEEEEETT--EEEEEEGG-------------GCEEEEECSSSCEEEEECCCS---------
T ss_pred EEECCCCcEEEEEecCCCceEEEecCC--eeEEEeCC-------------CcEEEEEeccccchhhhcccc---------
Confidence 8898 663 334443344445555543 44444332 357788887543221110000
Q ss_pred CccCCCceeeeecCCCc--e-EEEEEeccCCCCccccCcccceeeccCCCCCC-CCceEeEeece------------eEE
Q 004475 239 SVREGMRSISWRADKPS--T-LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILHKLDL------------RFS 302 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~--~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~------------~~~ 302 (751)
.......+.+.+++.. . ++... ..+.+.++++..... .....+..... .+.
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 211 -LKHQHRCVAIFKDKQNKPTGFALGS------------IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp -CSSCEEEEEEEECTTSCEEEEEEEE------------TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEE
T ss_pred -ccCCCceEEEcccCCCCCCeEEEec------------CCCcEEEEecCCCCccccceeeeeeecccccccccccccceE
Confidence 0111234455544432 0 22221 235677777642110 11122222222 466
Q ss_pred -EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 303 -VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.|+|||+.|+.+.. ...|.+.++.++ ............+.. ++|+|||++|+..+.
T Consensus 278 ~~~~sp~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~------~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGS----DGRFSFWDKDAR--TKLKTSEQLDQPISA------CCFNHNGNIFAYASS 335 (368)
T ss_dssp EEEECTTTCCEEEEET----TSCEEEEETTTT--EEEEECCCCSSCEEE------EEECTTSSCEEEEEC
T ss_pred EEEEecCCCEEEEEcc----CCeEEEEECCCC--cEEEEecCCCCCceE------EEECCCCCeEEEEec
Confidence 999999999887652 245777777764 222222222222222 889999999999883
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=109.99 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=103.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.|.. ...| ..+... +..+|.|++ .+.+|+|.+.... .+|+.+.++.
T Consensus 13 ~~~lv~lhg~g~~-----------~~~~----~~~~~~-L~~~~~vi~---~Dl~GhG~S~~~~------~~~~~~~~~~ 67 (242)
T 2k2q_B 13 KTQLICFPFAGGY-----------SASF----RPLHAF-LQGECEMLA---AEPPGHGTNQTSA------IEDLEELTDL 67 (242)
T ss_dssp CCEEESSCCCCHH-----------HHHH----HHHHHH-HCCSCCCEE---EECCSSCCSCCCT------TTHHHHHHHH
T ss_pred CceEEEECCCCCC-----------HHHH----HHHHHh-CCCCeEEEE---EeCCCCCCCCCCC------cCCHHHHHHH
Confidence 5789999996411 0111 112223 356799999 6677888764321 2344455555
Q ss_pred HHHcCCCC-CCcEEEEEeChHHHHHHHHHHh------CCCceeEEEEccCCCCCCC-CccC-------c---ccccccch
Q 004475 592 VVRRGVAD-PSRIAVGGHSYGAFMTAHLLAH------APHLFCCGIARSGSYNKTL-TPFG-------F---QTEFRTLW 653 (751)
Q Consensus 592 l~~~~~id-~~~i~l~G~S~GG~~a~~~a~~------~p~~~~~~v~~~~~~d~~~-~~~~-------~---~~~~~~~~ 653 (751)
+.+.-.+. ..++.++||||||.+|+.+|.+ +|+.+.......+...... .... + ........
T Consensus 68 ~~~~l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T 2k2q_B 68 YKQELNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELV 147 (242)
T ss_dssp TTTTCCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTT
T ss_pred HHHHHHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHh
Confidence 44332222 2589999999999999999986 5665321111111111000 0000 0 00000000
Q ss_pred hh-----------HHHHH---hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 654 EA-----------TNVYI---EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 654 ~~-----------~~~~~---~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
.. ...+. .... ..+.++++|+|+++|++|..++ .... .+.+.-...+++++++ +|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~---~~~~----~~~~~~~~~~~~~~~~-gH~~ 218 (242)
T 2k2q_B 148 ENKEVMSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI---RDAE----GWKKWAKDITFHQFDG-GHMF 218 (242)
T ss_dssp HHHHTTTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH---HHHH----HHHTTCCCSEEEEEEC-CCSH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH---HHHH----HHHHHhcCCeEEEEeC-Ccee
Confidence 00 00111 1111 1256789999999999998753 2222 2333222345788875 8976
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 004475 720 AARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~ 739 (751)
. .+..+.+.+.+.+||.+.
T Consensus 219 ~-~e~p~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 219 L-LSQTEEVAERIFAILNQH 237 (242)
T ss_dssp H-HHHCHHHHHHHHHHHHTT
T ss_pred E-cCCHHHHHHHHHHHhhcc
Confidence 5 455678888999999754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-08 Score=104.89 Aligned_cols=212 Identities=10% Similarity=0.087 Sum_probs=116.3
Q ss_pred ceEEeeeeCCCCc-eEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCCCCCccCCccCCCceeeeec
Q 004475 175 AVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 175 ~~~~~~~~SpDG~-~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp 251 (751)
..+..++|+|+++ .|+.... ...|.+|++.++.. ..+... ..+......+..++|+|
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~~~~~~~~~~~-------~~~~~h~~~v~~v~~~p 241 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASD-------------DHTICLWDINATPKEHRVIDAK-------NIFTGHTAVVEDVAWHL 241 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECT-------------TSCEEEEETTSCCBGGGEEECS-------EEECCCSSCEEEEEECS
T ss_pred CCeEEEEeCCCCCCeEEEEeC-------------CCeEEEEeCCCCCCCCceeccc-------eeecCCCCCEeeeEEeC
Confidence 5677899999999 5544322 34688999976321 111000 01112223466899999
Q ss_pred CCCceEEEEEeccCCCCccccCcccceeeccCCCCC-CCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 252 dG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
++..+++... ..+.|+++++.... ......+......+. +.|+|+++.++++... ...|.+++
T Consensus 242 ~~~~~l~s~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd 306 (430)
T 2xyi_A 242 LHESLFGSVA------------DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 306 (430)
T ss_dssp SCTTEEEEEE------------TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEE
T ss_pred CCCCEEEEEe------------CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEe
Confidence 7766344433 33678888885211 123344445556677 9999999975544422 24566677
Q ss_pred CCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce---
Q 004475 330 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK--- 406 (751)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--- 406 (751)
+... ..+..........+.. ++|+|+|+.+++... ....|.+||+.....
T Consensus 307 ~~~~-~~~~~~~~~h~~~v~~------i~~sp~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 307 LRNL-KLKLHSFESHKDEIFQ------VQWSPHNETILASSG--------------------TDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp TTCT-TSCSEEEECCSSCEEE------EEECSSCTTEEEEEE--------------------TTSCCEEEEGGGTTCCCC
T ss_pred CCCC-CCCeEEeecCCCCEEE------EEECCCCCCEEEEEe--------------------CCCcEEEEeCCCCccccC
Confidence 6653 1222222222222222 889999986555441 123688888875221
Q ss_pred ---------eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 407 ---------ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 407 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
..+...... ......++|+|++++++++.... ..|.++++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h---------~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGH---------TAKISDFSWNPNEPWIICSVSED---NIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCC---------SSCEEEEEECSSSTTEEEEEETT---SEEEEEEECH
T ss_pred ccccccCCcceEEEcCCC---------CCCceEEEECCCCCCEEEEEECC---CCEEEeEccc
Confidence 111111110 01122368999999666665432 4566666654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-08 Score=97.39 Aligned_cols=239 Identities=16% Similarity=0.125 Sum_probs=144.0
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc-ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 120 (751)
|++|+|.. ...|++++++++..+.+....... -......++|+|+++.|+++...
T Consensus 1 ~~~l~~~~-----------~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------------- 56 (267)
T 1npe_A 1 GTHLLFAQ-----------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------- 56 (267)
T ss_dssp CEEEEEEE-----------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT-------------
T ss_pred CcEEEEEc-----------CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC-------------
Confidence 56788853 258999999877654321100000 00124578999999899987321
Q ss_pred CCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecC-CC-ceEEeeeeCCCCceEEEEEecCC
Q 004475 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRP 197 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (751)
...|++++++| ..+.+. .. .....++++|+++.|+++...
T Consensus 57 -----------------------------------~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~-- 99 (267)
T 1npe_A 57 -----------------------------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-- 99 (267)
T ss_dssp -----------------------------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--
T ss_pred -----------------------------------CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--
Confidence 14788888866 334333 22 466789999999999887533
Q ss_pred cccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccc
Q 004475 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~ 277 (751)
...|++++.++...+.+.... ....+.++++|++.+ |+++... ...+.
T Consensus 100 ----------~~~I~~~~~~g~~~~~~~~~~------------~~~P~~i~vd~~~g~-lyv~~~~---------~~~~~ 147 (267)
T 1npe_A 100 ----------LDRIEVAKMDGTQRRVLFDTG------------LVNPRGIVTDPVRGN-LYWTDWN---------RDNPK 147 (267)
T ss_dssp ----------TTEEEEEETTSCSCEEEECSS------------CSSEEEEEEETTTTE-EEEEECC---------SSSCE
T ss_pred ----------CCEEEEEEcCCCCEEEEEECC------------CCCccEEEEeeCCCE-EEEEECC---------CCCcE
Confidence 346888998876544332111 123458899998887 7776511 01257
Q ss_pred eeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCC
Q 004475 278 IYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 355 (751)
Q Consensus 278 l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 355 (751)
|++++.+ +...+.+.... .... ++++|+++.|+++.. ....|+++++++. ..+.+.... ..|
T Consensus 148 I~~~~~d---g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~~~~I~~~~~~g~--~~~~~~~~~--------~~P 211 (267)
T 1npe_A 148 IETSHMD---GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQP--GRRKVLEGL--------QYP 211 (267)
T ss_dssp EEEEETT---SCCCEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEE--EEEEEEECC--------CSE
T ss_pred EEEEecC---CCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---CCCEEEEEecCCC--ceEEEecCC--------CCc
Confidence 8888875 44444443222 2234 899999998887662 3458999999873 222332211 111
Q ss_pred CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 356 MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 356 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
...++|+..|++... ....|+++|.++|+....+
T Consensus 212 -~gi~~d~~~lyva~~--------------------~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 212 -FAVTSYGKNLYYTDW--------------------KTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp -EEEEEETTEEEEEET--------------------TTTEEEEEETTTTEEEEEE
T ss_pred -eEEEEeCCEEEEEEC--------------------CCCeEEEEeCCCCCceEEE
Confidence 223456667766552 2347899999888765443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-08 Score=102.87 Aligned_cols=250 Identities=10% Similarity=0.052 Sum_probs=135.5
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
.+..++|+|||++|+..+.+ ..|.++|+ ++
T Consensus 15 ~V~~v~~s~~g~~lasgs~D-------------------------------------------------~~v~lwd~~~~ 45 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSD-------------------------------------------------RSVKIFDVRNG 45 (316)
T ss_dssp CEEEEEECGGGCEEEEEETT-------------------------------------------------TEEEEEEEETT
T ss_pred eEEEeeEcCCCCEEEEEeCC-------------------------------------------------CeEEEEEecCC
Confidence 36788999999999887543 35666777 55
Q ss_pred C---ceecCCC-ceEEeeeeCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 167 T---AKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 167 ~---~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ ...+..+ ..+..++|+|+ |+.|+..+.+ ..+.+||+.++..+.+... ...
T Consensus 46 ~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-------------~~v~iWd~~~~~~~~~~~~----------~~h 102 (316)
T 3bg1_A 46 GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-------------RKVIIWREENGTWEKSHEH----------AGH 102 (316)
T ss_dssp EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-------------SCEEEECCSSSCCCEEEEE----------CCC
T ss_pred CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-------------CEEEEEECCCCcceEEEEc----------cCC
Confidence 3 2344445 77889999874 8887766543 3588999986532222111 112
Q ss_pred cCCCceeeeecC--CCceEEEEEeccCCCCccccCcccceeeccCCCCCCC-Cc---eEeEeeceeEE-EEEecCC----
Q 004475 241 REGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KP---EILHKLDLRFS-VSWCDDS---- 309 (751)
Q Consensus 241 ~~~~~~~~~spd--G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~l~~~~~~~~-~~~spdg---- 309 (751)
...+..++|+|+ |.. |+..+ ..+.|.++++. .. .. ..+......+. +.|+|++
T Consensus 103 ~~~V~~v~~~p~~~g~~-lasgs------------~D~~i~lwd~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 103 DSSVNSVCWAPHDYGLI-LACGS------------SDGAISLLTYT---GEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp SSCCCEEEECCTTTCSC-EEEEC------------SSSCEEEEEEC---SSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred CCceEEEEECCCCCCcE-EEEEc------------CCCCEEEEecC---CCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 234668999998 555 44432 23467777764 21 11 11112233445 7899883
Q ss_pred -------------ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCC----CEEEEeeee
Q 004475 310 -------------LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG----TNVIAKIKK 372 (751)
Q Consensus 310 -------------~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG----~~l~~~~~~ 372 (751)
+.|+..+ .+..-.||.+..... .............+.. ++|+|++ +.|+..+.+
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~------v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRD------VAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ----CCSCCCCCCCBEECCB--TTSBCCEEEECTTSC-EEEEECCBCCSSCEEE------EECCCCSSCSCCEEEEEETT
T ss_pred ccccccccCccccceEEEec--CCCeEEEEEeCCCCc-cceeeecccCCCceEE------EEecCCCCCCCceEEEEcCC
Confidence 5555443 223345665532210 0111111222222222 7899997 677776632
Q ss_pred cCCcceEEEEccCCCCCCCCCceeEEEecCCCce----eEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCC
Q 004475 373 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK----ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 448 (751)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 448 (751)
..|.+|++.+... ..+... .......++|||||+.|+.....
T Consensus 238 ---------------------~~v~iw~~~~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~las~~~D-- 283 (316)
T 3bg1_A 238 ---------------------GRVFIWTCDDASSNTWSPKLLHK-----------FNDVVWHVSWSITANILAVSGGD-- 283 (316)
T ss_dssp ---------------------CEEEEEECSSTTCCCCBCCEEEE-----------CSSCEEEEEECTTTCCEEEEESS--
T ss_pred ---------------------CeEEEEEccCccccchhhhhhhc-----------CCCcEEEEEEcCCCCEEEEEcCC--
Confidence 2688888865311 111111 01111236899999987765422
Q ss_pred CCCeEEEEEcC-CCceeEeecCC
Q 004475 449 EITQYHILSWP-LKKSSQITNFP 470 (751)
Q Consensus 449 ~~~~l~~~~~~-~g~~~~lt~~~ 470 (751)
..+.+++.. .|+...+....
T Consensus 284 --~~v~lw~~~~~g~~~~~~~~~ 304 (316)
T 3bg1_A 284 --NKVTLWKESVDGQWVCISDVN 304 (316)
T ss_dssp --SCEEEEEECTTSCEEEEEECC
T ss_pred --CeEEEEEECCCCcEEEeeecc
Confidence 235555543 35555554443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=119.03 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=125.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||+.||... ..+.|++++..+++......... .+..++|+| |++|+..+.+
T Consensus 19 ~V~~lafspdg~~lAsgs----------~Dg~I~lw~~~~~~~~~~~~~~~-----~V~~l~fsp-g~~L~S~s~D---- 78 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIAT----------VTGEVHIYGQQQVEVVIKLEDRS-----AIKEMRFVK-GIYLVVINAK---- 78 (902)
T ss_dssp CEEEEEEETTTTEEEEEE----------TTSEEEEECSTTCEEEEECSSCC-----CEEEEEEET-TTEEEEEETT----
T ss_pred CcEEEEECCCCCEEEEEe----------CCCEEEEEeCCCcEEEEEcCCCC-----CEEEEEEcC-CCEEEEEECc----
Confidence 578899999999999853 33678888887765443322221 478999999 8877766432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCCceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~i 189 (751)
..|.++|+ +|+ ...+.....+..++|+|||++|
T Consensus 79 ---------------------------------------------~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 79 ---------------------------------------------DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWM 113 (902)
T ss_dssp ---------------------------------------------CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEE
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEE
Confidence 46788888 563 3444434678899999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
+....+ ..+.+||++++............. ...+......+..++|+|++...++...
T Consensus 114 ~sgs~d-------------g~V~lwd~~~~~~~~~~i~~~~~~-~~~~~~h~~~V~sl~~sp~~~~~l~~g~-------- 171 (902)
T 2oaj_A 114 LIGLQN-------------GSMIVYDIDRDQLSSFKLDNLQKS-SFFPAARLSPIVSIQWNPRDIGTVLISY-------- 171 (902)
T ss_dssp EEEETT-------------SCEEEEETTTTEEEEEEECCHHHH-HTCSSSCCCCCCEEEEETTEEEEEEEEC--------
T ss_pred EEEcCC-------------CcEEEEECCCCccccceecccccc-ccccccCCCCeEEEEEccCCCCEEEEEe--------
Confidence 876543 368899998876432110000000 0001122234678999998655244432
Q ss_pred cccCcccceeeccCCCCCCCCce-EeEee------------------ceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPE-ILHKL------------------DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~-~l~~~------------------~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
..+.+ ++++. ..... .+... ...+. ++|+|||+.|+.... ...|.+.|
T Consensus 172 ----~dg~v-lWd~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~----Dg~i~lWd 239 (902)
T 2oaj_A 172 ----EYVTL-TYSLV---ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE----DNSLVFWD 239 (902)
T ss_dssp ----SSCEE-EEETT---TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET----TCCEEEEE
T ss_pred ----CCCcE-EEECC---CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC----CCeEEEEE
Confidence 23467 78775 22221 11111 13466 999999998887662 23566666
Q ss_pred CCCC
Q 004475 330 PGSK 333 (751)
Q Consensus 330 ~~~~ 333 (751)
+.++
T Consensus 240 ~~~g 243 (902)
T 2oaj_A 240 ANSG 243 (902)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-08 Score=103.42 Aligned_cols=208 Identities=10% Similarity=0.016 Sum_probs=119.0
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
++.+|++.+ ++........ .+....++++++.++.+. .+...|.++|+.+++.........
T Consensus 41 ~~~iw~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~~d~~v~iWd~~~~~~~~~~~~~~--- 101 (355)
T 3vu4_A 41 SFEIYNVHP----VAHIMSQEMR---HLSKVRMLHRTNYVAFVT---------GVKEVVHIWDDVKKQDVSRIKVDA--- 101 (355)
T ss_dssp EEEEEEETT----EEEEEEEECS---CCCEEEECTTSSEEEEEC---------SSTTEEEEEETTTTEEEEEEECSS---
T ss_pred EEEEEecCC----cceeeeeecC---CeEEEEEcCCCCEEEEEE---------CCccEEEEEECCCCcEEEEEECCC---
Confidence 577888877 6554433221 366788999999998864 233589999998887544322222
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
.+..+.|++++..+ ... ..|+++++
T Consensus 102 --~v~~v~~~~~~~~~--~~~--------------------------------------------------~~i~i~d~~ 127 (355)
T 3vu4_A 102 --PVKDLFLSREFIVV--SYG--------------------------------------------------DVISVFKFG 127 (355)
T ss_dssp --CEEEEEECSSEEEE--EET--------------------------------------------------TEEEEEESS
T ss_pred --ceEEEEEcCCEEEE--EEc--------------------------------------------------CEEEEEECC
Confidence 36778888876333 211 36778888
Q ss_pred CC-C-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC--CCCCC--CccC
Q 004475 165 DG-T-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP--AEDIP--VCYN 238 (751)
Q Consensus 165 ~G-~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~--~~~~ 238 (751)
++ + ...+. ......++++ +.+++.+... ...+.+||+.++.......... ....| ..+.
T Consensus 128 ~~~~~~~~~~--~~~~~~~~s~--~~la~~sg~~-----------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 128 NPWKRITDDI--RFGGVCEFSN--GLLVYSNEFN-----------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp TTCCBSSCCE--EEEEEEEEET--TEEEEEESSC-----------TTCEEEEECCC------------------CCEEEC
T ss_pred CCceeeEEec--cCCceEEEEc--cEEEEeCCCc-----------CcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 43 2 22221 1233455666 6777752221 3468899998654100000000 00000 1122
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccc-eeeccCCCCCCCCceEeE-e-eceeEE-EEEecCCceEEE
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI-IYTQPAEPAEGEKPEILH-K-LDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~l~-~-~~~~~~-~~~spdg~~l~~ 314 (751)
.....+..++|||||+. |+..+ ..+. +.++++.. +.....+. . ....+. ++|||||+.|+.
T Consensus 193 ~h~~~v~~~~~s~~g~~-l~s~s------------~d~~~v~iwd~~~--~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s 257 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDM-VATCS------------QDGTIIRVFKTED--GVLVREFRRGLDRADVVDMKWSTDGSKLAV 257 (355)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEE------------TTCSEEEEEETTT--CCEEEEEECTTCCSCEEEEEECTTSCEEEE
T ss_pred ccCCceEEEEECCCCCE-EEEEe------------CCCCEEEEEECCC--CcEEEEEEcCCCCCcEEEEEECCCCCEEEE
Confidence 33345778999999997 55544 2355 88888851 23334444 1 455677 999999999887
Q ss_pred ee
Q 004475 315 ET 316 (751)
Q Consensus 315 ~~ 316 (751)
.+
T Consensus 258 ~s 259 (355)
T 3vu4_A 258 VS 259 (355)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-08 Score=101.62 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=105.3
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
.+..++|+|||++|+..+.+ ..|.++++ ++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~d-------------------------------------------------g~i~iw~~~~~ 43 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSD-------------------------------------------------QHIKVFKLDKD 43 (351)
T ss_dssp CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEEECSS
T ss_pred ceeEEEEcCCCCEEEEeeCC-------------------------------------------------CeEEEEECCCC
Confidence 47889999999999887432 35666666 33
Q ss_pred --C---ceecCCC-ceEEeeeeCC--CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 167 --T---AKDFGTP-AVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 167 --~---~~~lt~~-~~~~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
. ...+..+ ..+..++|+| ||++|+....+ ..+.+||+.+++........ .....+.
T Consensus 44 ~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-------------g~v~vwd~~~~~~~~~~~~~---~~~~~~~ 107 (351)
T 3f3f_A 44 TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-------------KTVKLWEEDPDQEECSGRRW---NKLCTLN 107 (351)
T ss_dssp SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-------------SCEEEEEECTTSCTTSSCSE---EEEEEEC
T ss_pred CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-------------CeEEEEecCCCcccccccCc---ceeeeec
Confidence 1 1223334 7788999999 68888876543 35889998765321000000 0000111
Q ss_pred CccCCCceeeeecC--CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE-------------eeceeEE-
Q 004475 239 SVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------------KLDLRFS- 302 (751)
Q Consensus 239 ~~~~~~~~~~~spd--G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------------~~~~~~~- 302 (751)
.....+..+.|+|+ ++. ++... ..+.|+++++.. +.....+. .....+.
T Consensus 108 ~~~~~v~~~~~~~~~~~~~-l~~~~------------~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLK-LACLG------------NDGILRLYDALE--PSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CCSSCEEEEEECCGGGCSE-EEEEE------------TTCEEEEEECSS--TTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ccCCceeEEEEcCCCCCcE-EEEec------------CCCcEEEecCCC--hHHhccccccccccccccccCCcccceeE
Confidence 22234668999999 887 55543 235788888742 11111111 1223345
Q ss_pred EEEecC---CceEEEeeeecccceeEEEecCCCCCCcceeee--ecccccccCCCCCCCeeeCCCC----CEEEEee
Q 004475 303 VSWCDD---SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTG----TNVIAKI 370 (751)
Q Consensus 303 ~~~spd---g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~spDG----~~l~~~~ 370 (751)
+.|+|+ +..|+..... ..+.......+ ....+. ......+.. ++|+|+| +.|+..+
T Consensus 173 ~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~--~~~~~~~~~~h~~~i~~------~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALE----QAIIYQRGKDG--KLHVAAKLPGHKSLIRS------ISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp EEECCCSSSCCEEEEEETT----EEEEEEECTTS--CEEEEEECCCCCSCEEE------EEECCCSSCSSEEEEEEE
T ss_pred EEeccCCCCCcEEEEecCC----CcEEEEccCCC--ceeeeeecCCCCcceeE------EEECCCCCCcceEEEEEc
Confidence 899998 7877766522 22333333332 222221 112222222 7899998 6676666
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-09 Score=119.41 Aligned_cols=247 Identities=9% Similarity=0.019 Sum_probs=145.3
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
.+..++|+|||++|+....+ +.|.++++ ++
T Consensus 11 ~V~~l~~s~dg~~latg~~d-------------------------------------------------g~I~vwd~~~~ 41 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-------------------------------------------------KTIKIFEVEGE 41 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-------------------------------------------------TEEEEEEEETT
T ss_pred eeEEEEECCCCCeEEEEECC-------------------------------------------------CcEEEEecCCC
Confidence 47788999999998887432 35666666 33
Q ss_pred ---CceecCCC-ceEEeeeeCCC--CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCc
Q 004475 167 ---TAKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 167 ---~~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
....+..+ ..+..++|+|+ |++|+..+.+ ..|.+||+.++....+... ...
T Consensus 42 ~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-------------g~I~vwd~~~~~~~~~~~~----------~~h 98 (753)
T 3jro_A 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------------GKVLIWKEENGRWSQIAVH----------AVH 98 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-------------SCEEEEEEETTEEEEEEEE----------CCC
T ss_pred CCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-------------CeEEEEECCCCcccccccc----------cCC
Confidence 23344444 77889999998 8888876543 3688999987753322111 112
Q ss_pred cCCCceeeeecC--CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec----------
Q 004475 241 REGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD---------- 307 (751)
Q Consensus 241 ~~~~~~~~~spd--G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp---------- 307 (751)
...+..+.|+|+ |+. ++... ..+.|.++++...+......+......+. +.|+|
T Consensus 99 ~~~V~~v~~sp~~~~~~-l~sgs------------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 99 SASVNSVQWAPHEYGPL-LLVAS------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp SSCEEEEEECCGGGCSE-EEEEE------------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred CCCeEEEEECCCCCCCE-EEEEe------------CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 234668999999 776 55543 33578888885222223344445566677 99999
Q ss_pred ---CCceEEEeeeecccceeEEEecCCCCCCcceee--eecccccccCCCCCCCeeeCCC---CCEEEEeeeecCCcceE
Q 004475 308 ---DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTST---GTNVIAKIKKENDEQIY 379 (751)
Q Consensus 308 ---dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~spD---G~~l~~~~~~~~~~~~~ 379 (751)
|++.|+.+.. .+ .|.+.++.++......+ .......+.. ++|+|+ |+.|+..+.+
T Consensus 166 ~~~d~~~l~sgs~--dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V~~------l~~sp~~~~~~~l~s~s~D------- 228 (753)
T 3jro_A 166 GTKESRKFVTGGA--DN--LVKIWKYNSDAQTYVLESTLEGHSDWVRD------VAWSPTVLLRSYLASVSQD------- 228 (753)
T ss_dssp -CGGGCCEEEEET--TS--CEEEEEEETTTTEEEEEEEECCCSSCEEE------EEECCCCSSSEEEEEEESS-------
T ss_pred cCCCCCEEEEEEC--CC--eEEEEeccCCcccceeeeeecCCCCcEEE------EEeccCCCCCCEEEEEecC-------
Confidence 5888877663 23 34444444321111121 1122222222 889999 8888777732
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
..|.+||+.+++......... ..........++|+|||+.++... . -+.++++++.
T Consensus 229 --------------g~I~iwd~~~~~~~~~~~~~~------~~~~~~~v~~l~~spdg~~l~s~s-~---Dg~I~vwd~~ 284 (753)
T 3jro_A 229 --------------RTCIIWTQDNEQGPWKKTLLK------EEKFPDVLWRASWSLSGNVLALSG-G---DNKVTLWKEN 284 (753)
T ss_dssp --------------SCEEEEEESSSSSCCBCCBSS------SSCCSSCCCCEEECTTTCCEEEEC-S---SSCEECCBCC
T ss_pred --------------CEEEEecCCCCCCcceeEEec------cCCCCCceEEEEEcCCCCEEEEEc-C---CCEEEEEecC
Confidence 268888988764221111000 000111223468999998776543 2 2457777776
Q ss_pred C
Q 004475 460 L 460 (751)
Q Consensus 460 ~ 460 (751)
+
T Consensus 285 ~ 285 (753)
T 3jro_A 285 L 285 (753)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-08 Score=107.79 Aligned_cols=299 Identities=12% Similarity=0.051 Sum_probs=159.2
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEec-CCcEEEEeecCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRD 111 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~ 111 (751)
...+.|+|||+.++... . ++..+.....+..+... .+..++|+| ||++|+..+.+
T Consensus 30 ~~~~~f~~~~~~~~~~~--------------~--w~~~g~~~~~~~~~h~~----~V~~~~~s~~~~~~l~s~s~d---- 85 (437)
T 3gre_A 30 RDYKEFGPIQEIVRSPN--------------M--GNLRGKLIATLMENEPN----SITSSAVSPGETPYLITGSDQ---- 85 (437)
T ss_dssp GGCGGGCCCCCCCCCCC--------------G--GGCCCCEEEEECTTTTS----CEEEEEEECSSSCEEEEEETT----
T ss_pred hchhhcCCccccccccc--------------c--ccccceEEeeeccCCCC----ceEEEEECCCCCCEEEEecCC----
Confidence 35678999999988732 1 23323223333222211 478899999 99999887543
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-C---CC-c---eecCCCceEEeeeeC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D---GT-A---KDFGTPAVYTAVEPS 183 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---G~-~---~~lt~~~~~~~~~~S 183 (751)
..|.++++ + +. . ..+.....+..++|+
T Consensus 86 ---------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 120 (437)
T 3gre_A 86 ---------------------------------------------GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI 120 (437)
T ss_dssp ---------------------------------------------SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC
T ss_pred ---------------------------------------------ceEEEeECcccccCcccceeeeccCCCCEEEEEEe
Confidence 35666666 3 32 1 111222678899999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCC---Ccee-eeeccCCCCCCCCCccCC--ccCCCceee--eecCCCc
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLV-RELCDLPPAEDIPVCYNS--VREGMRSIS--WRADKPS 255 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~~~~-~~l~~~~~~~~~~~~~~~--~~~~~~~~~--~spdG~~ 255 (751)
||++.|+..+.+ ..+.+||++ .++. +.+...... ...+.. ....+..+. ++||++.
T Consensus 121 ~~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 121 PNFDAFAVSSKD-------------GQIIVLKVNHYQQESEVKFLNCECIR---KINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp TTSSEEEEEETT-------------SEEEEEEEEEEEETTEEEEEEEEEEE---EEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEeccccCCceeeccccceeE---EEEccCcccccCceEEEEEEcCCCCE
Confidence 999998876543 357788874 2211 111100000 000000 111222333 6678876
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++... ..+.|.++++.. +.....+.. ....+. +.|+|+++.|+.+.. ...|.+.++.+
T Consensus 185 -l~~~~------------~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~ 245 (437)
T 3gre_A 185 -LVALT------------NLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEECCVLILGTT----RGIIDIWDIRF 245 (437)
T ss_dssp -EEEEE------------TTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTTSCEEEEEET----TSCEEEEETTT
T ss_pred -EEEEe------------CCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCCCCEEEEEcC----CCeEEEEEcCC
Confidence 55543 336889999851 222333333 345677 999999998887662 23566667666
Q ss_pred CCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 333 KDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 333 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
+ ....... .....+...... +.|+|||+.|+..+.+ ..|++||+.+++....+.
T Consensus 246 ~--~~~~~~~~~~~~~v~~~~~~--~~~s~~~~~l~s~~~d---------------------g~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 246 N--VLIRSWSFGDHAPITHVEVC--QFYGKNSVIVVGGSSK---------------------TFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp T--EEEEEEBCTTCEEEEEEEEC--TTTCTTEEEEEEESTT---------------------EEEEEEETTTTEEEEEEE
T ss_pred c--cEEEEEecCCCCceEEEEec--cccCCCccEEEEEcCC---------------------CcEEEEEcCCCcEEEEEE
Confidence 3 2222111 111111110000 2577888888776632 378999998887655443
Q ss_pred ccch-hh-hh-ce----------ee--eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 412 SNRE-KY-FE-TA----------VA--LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 412 ~~~~-~~-~~-~~----------~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
.... .. .. .. .. .......++|+ ++ .++++... -+.|.++|+.+++..+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~---d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEA---TSSIVMFSLNELSSSK 364 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGG---GTEEEEEETTCGGGCE
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCC---CCeEEEEECCCcccce
Confidence 2210 00 00 00 00 00111225777 55 44445433 3479999998876443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-08 Score=98.64 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=134.4
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..|+|+||++.++|+. .....|+++++++++.+.+.. +. .+..++|+|||+.++.. .
T Consensus 52 egp~~~~~~~~l~~~d---------~~~~~i~~~d~~~~~~~~~~~-~~-----~v~~i~~~~dg~l~v~~-~------- 108 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFN---------ILERELHELHLASGRKTVHAL-PF-----MGSALAKISDSKQLIAS-D------- 108 (326)
T ss_dssp EEEEEETTTTEEEEEE---------GGGTEEEEEETTTTEEEEEEC-SS-----CEEEEEEEETTEEEEEE-T-------
T ss_pred cCCeEeCCCCEEEEEE---------CCCCEEEEEECCCCcEEEEEC-CC-----cceEEEEeCCCeEEEEE-C-------
Confidence 5799999999998874 234689999999887766543 22 35778999999866643 1
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC------ceEEeeeeCCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPDQ 186 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~------~~~~~~~~SpDG 186 (751)
..|++++. +|+.+.+... ..+..+.++|||
T Consensus 109 -------------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G 145 (326)
T 2ghs_A 109 -------------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 145 (326)
T ss_dssp -------------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred -------------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC
Confidence 25888888 6666555321 346789999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
+ |++...... .......||+++ + ++.+.+.... .....++|+|||+. ++++..
T Consensus 146 ~-l~v~~~~~~------~~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~-lyv~~~---- 198 (326)
T 2ghs_A 146 A-LWIGTMGRK------AETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTT-GYFVDT---- 198 (326)
T ss_dssp C-EEEEEEETT------CCTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCE-EEEEET----
T ss_pred C-EEEEeCCCc------CCCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCE-EEEEEC----
Confidence 8 455443211 001135788888 4 4444432110 11337899999998 666541
Q ss_pred CCccccCcccceeeccCCCCCC-C--CceEeEee---ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 267 DANVEVSPRDIIYTQPAEPAEG-E--KPEILHKL---DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~-~--~~~~l~~~---~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
..+.|++++++..++ . ..+.+... .+... +.++++|. |+++.. ....|+++++++. ....
T Consensus 199 -------~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~---~~~~v~~~d~~g~--~~~~ 265 (326)
T 2ghs_A 199 -------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW---GEGAVDRYDTDGN--HIAR 265 (326)
T ss_dssp -------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE---TTTEEEEECTTCC--EEEE
T ss_pred -------CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEe---CCCEEEEECCCCC--EEEE
Confidence 125788888641122 1 12223221 23344 78899997 443331 1247888988542 2222
Q ss_pred eeecccccccCCCCCCCeeeC-CCCCEEEEeee
Q 004475 340 LFDRVFENVYSDPGSPMMTRT-STGTNVIAKIK 371 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~s-pDG~~l~~~~~ 371 (751)
+. ........ ++|+ +|++.|++...
T Consensus 266 i~-~~~~~~~~------~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 266 YE-VPGKQTTC------PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EE-CSCSBEEE------EEEESTTSCEEEEEEB
T ss_pred EE-CCCCCcEE------EEEecCCCCEEEEEec
Confidence 22 11111111 7787 89988877763
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=123.36 Aligned_cols=211 Identities=16% Similarity=0.061 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~~~~~~~-~~g~g~~ 571 (751)
+...+|.|...... .++|+||++|||||..++. ..+. ...... ..+|++|+.++|+- ..|++..
T Consensus 86 l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~----~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~ 151 (522)
T 1ukc_A 86 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYN----GTQVIQASDDVIVFVTFNYRVGALGFLAS 151 (522)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCC----CHHHHHHTTSCCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCCC--CCCCEEEEECCCccccCCc--------cccC----cHHHHHhcCCcEEEEEecccccccccccc
Confidence 56778888754322 3589999999998765432 1111 111211 25699999988863 2244332
Q ss_pred CCC--chhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEEccCCCCCCCCc
Q 004475 572 LPN--DRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 572 ~~~--~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~~d~~~~~ 642 (751)
... .......+.|+..+++|++++. ..|+++|.|+|+|+||+++..++... +..|+++|+.+|........
T Consensus 152 ~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~ 231 (522)
T 1ukc_A 152 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTV 231 (522)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCS
T ss_pred hhccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCH
Confidence 110 0012456889999999998852 36899999999999999888777653 56899999999975422111
Q ss_pred cCccc-------ccccc--hhhHHHHHhcCccc---------ccCCCCCC--EEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 643 FGFQT-------EFRTL--WEATNVYIEMSPIT---------HANKIKKP--ILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 643 ~~~~~-------~~~~~--~~~~~~~~~~~~~~---------~~~~~~~P--~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
..... ..... -...+.+...+... .......| .+.++...|..+. +....++.+.-..
T Consensus 232 ~~~~~~~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l--~~~p~~~~~~g~~ 309 (522)
T 1ukc_A 232 SEMEFQFERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLV--PDELYNAFDAGNF 309 (522)
T ss_dssp GGGHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSS--CSCHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCccc--CCCHHHHHhcCCC
Confidence 00000 00000 00111222222111 01112233 4556677776664 5666666655444
Q ss_pred CCCcEEEEEeCCCCCcCC
Q 004475 703 HGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~ 720 (751)
.++++-+-...+++|.+.
T Consensus 310 ~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 310 IKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp CCCCEEEEEETBGGGGTS
T ss_pred CCCCEEEEeecchhHHhh
Confidence 556666667788888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.9e-08 Score=98.73 Aligned_cols=240 Identities=8% Similarity=-0.027 Sum_probs=133.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCC-------CCeEEEEEeecccccccCCceeEEEEEcCCCC-eee
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD-------GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKP 76 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPD-------G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~-~~~ 76 (751)
..|++||+.+ |+...... ...+....|+|+ |...++ +....+.+++..+++ .+.
T Consensus 58 g~v~iwd~~~----~~~~~~~~---~~~v~~~~~~~~~~s~s~D~~i~~w-----------~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 58 GALHFTQLKD----SKTITTIT---TPNPRTGGEHPAIISRGPCNRLLLL-----------YPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp TEEEEEEESS----SSCEEEEE---EECCCTTCCCCSEEEECSTTEEEEE-----------ETTTEEEEEETTTCCEEEE
T ss_pred CcEEEEECCC----CcEEEEEe---cCCceeeeeCCceEEecCCCeEEEE-----------EccCceEEeecCCcceeEE
Confidence 4689999988 76543221 123455556665 322222 222344455666665 333
Q ss_pred ccCCCCccccceeeeeEEec--CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhh
Q 004475 77 LFESPDICLNAVFGSFVWVN--NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (751)
Q Consensus 77 lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (751)
+..... ..+..++|+| +|+.|+..+.+
T Consensus 120 ~~~~~~----~~v~~~~~~~~~~~~~l~s~s~d----------------------------------------------- 148 (343)
T 3lrv_A 120 IEVDSA----NEIIYMYGHNEVNTEYFIWADNR----------------------------------------------- 148 (343)
T ss_dssp EECCCS----SCEEEEECCC---CCEEEEEETT-----------------------------------------------
T ss_pred eecCCC----CCEEEEEcCCCCCCCEEEEEeCC-----------------------------------------------
Confidence 321111 1367889999 99998877542
Q ss_pred eeeEEEEEcC-CCCceecC-C-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee--eeccCC
Q 004475 155 TTAQLVLGSL-DGTAKDFG-T-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLP 228 (751)
Q Consensus 155 ~~~~l~~~~~-~G~~~~lt-~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~ 228 (751)
..|.++|+ +++...+. . . ..+..++|+|||+.|+....+ ..|.+||+.+++.. .+..
T Consensus 149 --g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~-- 211 (343)
T 3lrv_A 149 --GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPV-- 211 (343)
T ss_dssp --CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCC--
T ss_pred --CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEec--
Confidence 46777888 66543332 2 2 457899999999988875433 46889999876533 2211
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe---eceeE--E-
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRF--S- 302 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~~--~- 302 (751)
.....+..++|+|||+. |+..+ .+.|.++|+.. ......+.. ....+ .
T Consensus 212 ----------~h~~~v~~l~fs~~g~~-l~s~~-------------~~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 212 ----------DEEAKIKEVKFADNGYW-MVVEC-------------DQTVVCFDLRK--DVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ----------CTTSCEEEEEECTTSSE-EEEEE-------------SSBEEEEETTS--STTCBSSCCCBC-----CCEE
T ss_pred ----------cCCCCEEEEEEeCCCCE-EEEEe-------------CCeEEEEEcCC--CCcceeecccccccccccceE
Confidence 01234678999999997 55543 12678888752 111111111 11111 3
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCC---CCCEEEEeee
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS---TGTNVIAKIK 371 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp---DG~~l~~~~~ 371 (751)
++|+|+|++|+..+.. +..-.||.++.... ... . ..... .+|++ +++.|++.+.
T Consensus 266 ~~~~~~g~~l~~~s~~-d~~i~v~~~~~~~~--~~~-~--~~~~~---------~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNE-SNSLTIYKFDKKTK--NWT-K--DEESA---------LCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp EEECTTSSEEEEEETT-TTEEEEEEECTTTC--SEE-E--EEEEE---------CCC----CCCCEEEEEEE
T ss_pred EEECCCCCEEEEecCC-CCcEEEEEEccccc--ceE-e--cCcee---------EecCccccccceeEEEec
Confidence 7899999998875521 23345666544332 111 1 11111 44677 8888777773
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.7e-09 Score=111.74 Aligned_cols=144 Identities=9% Similarity=-0.024 Sum_probs=84.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-ee-eeccCCCCCCCCCccCCccCCCcee--eee
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VR-ELCDLPPAEDIPVCYNSVREGMRSI--SWR 250 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~--~~s 250 (751)
..+..++|+|++ .|+..+. +..+.+||+.++. .. .+. .....+..+ .|+
T Consensus 267 ~~v~sv~~s~~~-~lasgs~-------------DgtV~lWD~~~~~~~~~~~~-------------~H~~~V~sv~~~~s 319 (524)
T 2j04_B 267 SLITTFDFLSPT-TVVCGFK-------------NGFVAEFDLTDPEVPSFYDQ-------------VHDSYILSVSTAYS 319 (524)
T ss_dssp TCEEEEEESSSS-EEEEEET-------------TSEEEEEETTBCSSCSEEEE-------------CSSSCEEEEEEECC
T ss_pred CCEEEEEecCCC-eEEEEeC-------------CCEEEEEECCCCCCceEEee-------------cccccEEEEEEEcC
Confidence 678899999875 5655433 3468899998542 11 121 122335666 689
Q ss_pred cCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec--eeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 251 pdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
|+|..+|+-++ ..+.+.++|+.. +.....+.... ..+. ++|+||++.|+.+.. ...|.+
T Consensus 320 ~~g~~~laS~S------------~D~tvklWD~~~--~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~l 381 (524)
T 2j04_B 320 DFEDTVVSTVA------------VDGYFYIFNPKD--IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRA 381 (524)
T ss_dssp TTSCCEEEEEE------------TTSEEEEECGGG--HHHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEE
T ss_pred CCCCeEEEEec------------cCCeEEEEECCC--CCcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEE
Confidence 99854244443 335788888741 11222333222 2345 899999998776542 234566
Q ss_pred ecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 328 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
.++.++ .....+.. ....+.. ++|||||+.|+..+.
T Consensus 382 wd~~~~-~~~~~l~g-H~~~V~s------va~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 382 VPSRAA-FAVHPLVS-RETTITA------IGVSRLHPMVLAGSA 417 (524)
T ss_dssp EETTCT-TCCEEEEE-CSSCEEE------EECCSSCCBCEEEET
T ss_pred EECccc-ccceeeec-CCCceEE------EEeCCCCCeEEEEEC
Confidence 666654 22233332 3333333 889999999887773
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-08 Score=100.44 Aligned_cols=213 Identities=11% Similarity=0.047 Sum_probs=129.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|++++..+ ++.+.+. .+ ..+....|+|||+.++.. . ..|+++++++|+.+.+.......
T Consensus 71 ~~i~~~d~~~----~~~~~~~-~~--~~v~~i~~~~dg~l~v~~----------~--~gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 71 RELHELHLAS----GRKTVHA-LP--FMGSALAKISDSKQLIAS----------D--DGLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp TEEEEEETTT----TEEEEEE-CS--SCEEEEEEEETTEEEEEE----------T--TEEEEEETTTCCEEEEECSSTTC
T ss_pred CEEEEEECCC----CcEEEEE-CC--CcceEEEEeCCCeEEEEE----------C--CCEEEEECCCCcEEEEeeCCCCC
Confidence 4688888877 7766554 23 246778899999876652 1 34999999999877765432111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....+..++++|||+ |++......... ....||+++
T Consensus 132 ~~~~~~~i~~d~~G~-l~v~~~~~~~~~------------------------------------------~~~~l~~~~- 167 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGA-LWIGTMGRKAET------------------------------------------GAGSIYHVA- 167 (326)
T ss_dssp TTEEEEEEEECTTSC-EEEEEEETTCCT------------------------------------------TCEEEEEEE-
T ss_pred CCCCCCCEEECCCCC-EEEEeCCCcCCC------------------------------------------CceEEEEEe-
Confidence 011356889999998 555432110000 115789998
Q ss_pred CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--Cc-ee---eeeccCCCCCCCCCcc
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GK-LV---RELCDLPPAEDIPVCY 237 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~-~~---~~l~~~~~~~~~~~~~ 237 (751)
+|+.+.+... .....++|||||+.|++.... ...|++++.+ ++ .. +.+.....
T Consensus 168 ~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-------- 227 (326)
T 2ghs_A 168 KGKVTKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLDARTGLPTGKAEVFIDSTG-------- 227 (326)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBCTTTCCBSSCCEEEEECTT--------
T ss_pred CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC------------CCEEEEEEcccccCCcccCceEEEECCC--------
Confidence 7866665433 445688999999999886432 3468899875 44 32 11111110
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEe-cCCceEEEe
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC-DDSLALVNE 315 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s-pdg~~l~~~ 315 (751)
....+..+.+++||+ |+++.. ..+.|++++.+ +.....+........ ++|+ ||++.|+++
T Consensus 228 --~~~~p~gi~~d~~G~--lwva~~-----------~~~~v~~~d~~---g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 228 --IKGGMDGSVCDAEGH--IWNARW-----------GEGAVDRYDTD---GNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp --SSSEEEEEEECTTSC--EEEEEE-----------TTTEEEEECTT---CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred --CCCCCCeeEECCCCC--EEEEEe-----------CCCEEEEECCC---CCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 111234788999996 444321 12468888764 433344433333455 8898 999988776
Q ss_pred eee
Q 004475 316 TWY 318 (751)
Q Consensus 316 ~~~ 318 (751)
+..
T Consensus 290 ~~~ 292 (326)
T 2ghs_A 290 SAR 292 (326)
T ss_dssp EBC
T ss_pred ecC
Confidence 643
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-10 Score=117.53 Aligned_cols=184 Identities=9% Similarity=0.012 Sum_probs=111.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +. ...|.......|++ .||.|++ .+.+|+|.+.... .......+|+.++
T Consensus 70 ~~~vvllHG~~~-----------s~--~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~g~s~~~~~~~~~~~~~~dl~~~ 133 (432)
T 1gpl_A 70 RKTRFIIHGFTD-----------SG--ENSWLSDMCKNMFQVEKVNCIC---VDWKGGSKAQYSQASQNIRVVGAEVAYL 133 (432)
T ss_dssp SEEEEEECCTTC-----------CT--TSHHHHHHHHHHHHHCCEEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCC-----------CC--CchHHHHHHHHHHhcCCcEEEE---EECccccCccchhhHhhHHHHHHHHHHH
Confidence 689999999631 11 01111123455665 7999999 5556666653211 1234556888899
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCccccc
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA 668 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (751)
++++.++..++.++|.++||||||++|+.++.++|+++++++++.|........ . +...+
T Consensus 134 i~~l~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~----~----------------~~~~l 193 (432)
T 1gpl_A 134 VQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDT----P----------------EEVRL 193 (432)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTC----C----------------TTTSC
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCC----C----------------hhhcc
Confidence 999976544567899999999999999999999999999999888753211000 0 00000
Q ss_pred -CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc-cHHHHHHHHHHHHHHHh
Q 004475 669 -NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE-NVMHVIWETDRWLQKYC 740 (751)
Q Consensus 669 -~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~fl~~~l 740 (751)
.....++.+||+..|.+|| ... +.... .-.++..||+++|....-. .......+...|+.+.+
T Consensus 194 ~~~da~~V~vIHt~~d~lVP--~~~----~g~~~---~lg~~dfypngg~~qpgc~~~~~Csh~ra~~~~~esi 258 (432)
T 1gpl_A 194 DPSDAKFVDVIHTDISPILP--SLG----FGMSQ---KVGHMDFFPNGGKDMPGCKTGISCNHHRSIEYYHSSI 258 (432)
T ss_dssp CGGGSSEEEEECSCCSCHHH--HCC----CBCSS---CCSSEEEEEGGGSSCTTCSSCTTHHHHHHHHHHHHHH
T ss_pred CcCCCceEEEEEcCCccccc--ccc----ccccc---cccceEEccCCCCCCCCCCcccccchhhHHHHHHHHc
Confidence 1234689999999999987 300 00001 1124667899888532111 02233344555554443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-08 Score=105.62 Aligned_cols=112 Identities=11% Similarity=-0.011 Sum_probs=68.0
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee---ccCCCCccccceeeeeEEec--------CCcEEEEe
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFESPDICLNAVFGSFVWVN--------NSTLLIFT 104 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~---lt~~~~~~~~~~~~~~~wsp--------Dg~~l~~~ 104 (751)
..++|+++.||..+ ....|.++++++++... +....++ ...+..++|+| ||+.|+-.
T Consensus 95 ~~~~~~~~~las~~----------~d~~v~lw~~~~~~~~~~~~~~~~~gH--~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 95 NSSPVYSLFLACVC----------QDNTVRLIITKNETIITQHVLGGKSGH--HNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp --CCEEEEEEEEEE----------TTSCEEEEEEETTEEEEEEEECTTTSC--SSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred eecCCCCCEEEEEe----------CCCcEEEEECCCCccceeeeecccCCC--CCceEEEEEccccccccCCCCCEEEEE
Confidence 34566676777653 23455566666665322 2111221 12478999998 89999887
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-CceecCCC-ceEEeee
Q 004475 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVE 181 (751)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~lt~~-~~~~~~~ 181 (751)
+.+ ..|.++|+ ++ ....+..+ ..+..++
T Consensus 163 s~D-------------------------------------------------~tv~~Wd~~~~~~~~~~~~~~~~v~~v~ 193 (393)
T 4gq1_A 163 GDD-------------------------------------------------CTLIIWRLTDEGPILAGYPLSSPGISVQ 193 (393)
T ss_dssp ETT-------------------------------------------------SEEEEEEEETTEEEEEEEECSSCEEEEE
T ss_pred ECC-------------------------------------------------CeEEEEECCCCceeeeecCCCCCcEEEE
Confidence 553 36677777 44 33333333 6778999
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (751)
|+|++..++++... ...+.+||+.+++
T Consensus 194 ~~p~~~~~l~~~~~------------d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 194 FRPSNPNQLIVGER------------NGNIRIFDWTLNL 220 (393)
T ss_dssp EETTEEEEEEEEET------------TSEEEEEETTCCC
T ss_pred ECCCCCceEEecCC------------CCEEEEEECCCCc
Confidence 99999765554433 3468899987654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-08 Score=99.65 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=113.0
Q ss_pred ccccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCC
Q 004475 31 AKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (751)
Q Consensus 31 ~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 108 (751)
..+...+|+| +|++|+..+ ....|.++++.+++..++...... ..+..++|+|||+.|+..+.+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s----------~dg~i~~wd~~~~~~~~~~~~~~~---~~i~~~~~~pdg~~lasg~~d- 191 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWAD----------NRGTIGFQSYEDDSQYIVHSAKSD---VEYSSGVLHKDSLLLALYSPD- 191 (343)
T ss_dssp SCEEEEECCC---CCEEEEEE----------TTCCEEEEESSSSCEEEEECCCSS---CCCCEEEECTTSCEEEEECTT-
T ss_pred CCEEEEEcCCCCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEecCCC---CceEEEEECCCCCEEEEEcCC-
Confidence 3588999999 999998753 346788889988887554432221 136788999999998876432
Q ss_pred CCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-c-eecCC-C-ceEEeeeeC
Q 004475 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-A-KDFGT-P-AVYTAVEPS 183 (751)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~-~~lt~-~-~~~~~~~~S 183 (751)
..|.++|+ +++ . ..+.. + ..+..++|+
T Consensus 192 ------------------------------------------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 192 ------------------------------------------------GILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp ------------------------------------------------SCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred ------------------------------------------------CEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 46788888 664 3 45655 4 788999999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCC--ceeeeecCCCceEEEE
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGM--RSISWRADKPSTLYWV 260 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~--~~~~~spdG~~~i~~~ 260 (751)
|||++|+..+.+ .+.+||+.+.+.. .+..... ....+ ..++|+|+|++ |+..
T Consensus 224 ~~g~~l~s~~~~--------------~v~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~-l~~~ 278 (343)
T 3lrv_A 224 DNGYWMVVECDQ--------------TVVCFDLRKDVGTLAYPTYTI----------PEFKTGTVTYDIDDSGKN-MIAY 278 (343)
T ss_dssp TTSSEEEEEESS--------------BEEEEETTSSTTCBSSCCCBC---------------CCEEEEECTTSSE-EEEE
T ss_pred CCCCEEEEEeCC--------------eEEEEEcCCCCcceeeccccc----------ccccccceEEEECCCCCE-EEEe
Confidence 999999887522 5889999865432 1211100 00111 35899999998 5554
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEec---CCceEEEee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCD---DSLALVNET 316 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~sp---dg~~l~~~~ 316 (751)
+. ..+.+.+++.+. +...... .... ..|++ +++.|++..
T Consensus 279 s~-----------~d~~i~v~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 279 SN-----------ESNSLTIYKFDK--KTKNWTK----DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp ET-----------TTTEEEEEEECT--TTCSEEE----EEEEECCC----CCCCEEEEEE
T ss_pred cC-----------CCCcEEEEEEcc--cccceEe----cCceeEecCccccccceeEEEe
Confidence 31 023566666531 1111121 2333 56777 777777655
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-08 Score=98.31 Aligned_cols=238 Identities=12% Similarity=0.042 Sum_probs=137.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|++++..+ ++.+.+.. .....+...+|+|||+.++.... .......|++++.++++.+.+......
T Consensus 66 ~~i~~~d~~~----~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~------~~~~~~~i~~~d~~~~~~~~~~~~~~~- 133 (333)
T 2dg1_A 66 GNIFKINPET----KEIKRPFV-SHKANPAAIKIHKDGRLFVCYLG------DFKSTGGIFAATENGDNLQDIIEDLST- 133 (333)
T ss_dssp CEEEEECTTT----CCEEEEEE-CSSSSEEEEEECTTSCEEEEECT------TSSSCCEEEEECTTSCSCEEEECSSSS-
T ss_pred CEEEEEeCCC----CcEEEEee-CCCCCcceEEECCCCcEEEEeCC------CCCCCceEEEEeCCCCEEEEEEccCcc-
Confidence 4688888887 88776542 12234778899999975544211 001225899999998876643221111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
...+..++++|||+ |++........ .....||+++.
T Consensus 134 -~~~~~~i~~d~~g~-l~v~~~~~~~~------------------------------------------~~~~~l~~~~~ 169 (333)
T 2dg1_A 134 -AYCIDDMVFDSKGG-FYFTDFRGYST------------------------------------------NPLGGVYYVSP 169 (333)
T ss_dssp -CCCEEEEEECTTSC-EEEEECCCBTT------------------------------------------BCCEEEEEECT
T ss_pred -CCcccceEECCCCC-EEEEecccccc------------------------------------------CCCceEEEEeC
Confidence 11356789999996 44443210000 01257999998
Q ss_pred C-CCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC--ceeeeeccCCCCCCCCCccCCc
Q 004475 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSV 240 (751)
Q Consensus 165 ~-G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~ 240 (751)
+ ++.+.+... .....++|+|||++|++.... ...|++|+.++ +....+...... .+. .
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~------------~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~-~ 231 (333)
T 2dg1_A 170 DFRTVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGATIPY-----YFT-G 231 (333)
T ss_dssp TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEEEEE-----ECC-S
T ss_pred CCCEEEEeecCCCcccceEECCCCCEEEEEeCC------------CCeEEEEEecCCCcCcccccceEEE-----ecC-C
Confidence 5 466655433 456689999999998886432 24688888853 222221100000 000 0
Q ss_pred cCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece------eEE-EEEecCCceEE
Q 004475 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL------RFS-VSWCDDSLALV 313 (751)
Q Consensus 241 ~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~------~~~-~~~spdg~~l~ 313 (751)
...+..+.+++||+ ++++.. ..+.|++++.+ +.....+..... ... +.|+|||+.|+
T Consensus 232 ~~~~~~i~~d~~G~--l~v~~~-----------~~~~v~~~d~~---g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 232 HEGPDSCCIDSDDN--LYVAMY-----------GQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp SSEEEEEEEBTTCC--EEEEEE-----------TTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred CCCCCceEECCCCC--EEEEEc-----------CCCEEEEECCC---CCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 01245789999997 344321 12468888764 433333332211 344 88999998888
Q ss_pred Eeeeec--ccceeEEEecCCC
Q 004475 314 NETWYK--TSQTRTWLVCPGS 332 (751)
Q Consensus 314 ~~~~~~--~~~~~l~~~~~~~ 332 (751)
+++... .....||.++...
T Consensus 296 v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 296 ICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EEEECGGGTCCEEEEEEECSS
T ss_pred EEeCccCCCCCceEEEEeccc
Confidence 777542 2345788888764
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.9e-10 Score=120.00 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=87.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCC-CCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PIIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~-~~~g~g~~ 571 (751)
+...+|.|...... .++|+||++|||||..++. ..+.. ..|+ .+|++|+.++|+ +..|+...
T Consensus 99 l~lnv~~P~~~~~~--~~~Pv~v~iHGG~~~~g~~--------~~~~~------~~la~~~g~vvv~~nYRlg~~gf~~~ 162 (542)
T 2h7c_A 99 LYLNIYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STYDG------LALAAHENVVVVTIQYRLGIWGFFST 162 (542)
T ss_dssp CEEEEEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTSCC------HHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred cEEEEEECCCCCCC--CCCCEEEEECCCcccCCCc--------cccCH------HHHHhcCCEEEEecCCCCccccCCCC
Confidence 55668889764332 3589999999998754432 11111 1244 479999998886 22233222
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~d 637 (751)
..........+.|+..+++|+++. -..|+++|.|+|+|+||+++..++.. .+..|+++|+.+|...
T Consensus 163 ~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 163 GDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred CcccCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 111111123467899999999875 24689999999999999999998876 3578999999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-07 Score=96.70 Aligned_cols=299 Identities=14% Similarity=0.033 Sum_probs=167.4
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+|++.+ ++...... .....+....|+ ++.|+.. ...+.|.++++.+++..........
T Consensus 138 dg~i~vwd~~~----~~~~~~~~-~h~~~v~~~~~~--~~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~h~~ 200 (445)
T 2ovr_B 138 DNTLKVWSAVT----GKCLRTLV-GHTGGVWSSQMR--DNIIISG----------STDRTLKVWNAETGECIHTLYGHTS 200 (445)
T ss_dssp TSCEEEEETTT----CCEEEECC-CCSSCEEEEEEE--TTEEEEE----------ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcEEEEECCC----CcEEEEEc-CCCCCEEEEEec--CCEEEEE----------eCCCeEEEEECCcCcEEEEECCCCC
Confidence 45789999988 77654321 222356777776 5566664 3346788889888875444332221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..+.|+ ++.|+..+.+ ..|.++|
T Consensus 201 ----~v~~~~~~--~~~l~s~s~d-------------------------------------------------g~i~~wd 225 (445)
T 2ovr_B 201 ----TVRCMHLH--EKRVVSGSRD-------------------------------------------------ATLRVWD 225 (445)
T ss_dssp ----CEEEEEEE--TTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----cEEEEEec--CCEEEEEeCC-------------------------------------------------CEEEEEE
Confidence 35566674 5667766432 4788888
Q ss_pred C-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCC
Q 004475 164 L-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~ 239 (751)
+ +++ ...+..+ ..+..+.| ||+.|+....+ ..+.+||+.+++.. .+..+
T Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~------------ 278 (445)
T 2ovr_B 226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-------------FMVKVWDPETETCLHTLQGH------------ 278 (445)
T ss_dssp SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-------------SCEEEEEGGGTEEEEEECCC------------
T ss_pred CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-------------CEEEEEECCCCcEeEEecCC------------
Confidence 8 564 3344334 66677777 88888776543 35889998766433 22111
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeec
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYK 319 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~ 319 (751)
...+..+.| ||+. ++... ..+.|.++++.. +.....+......+. .++++++.|+...
T Consensus 279 -~~~v~~~~~--~~~~-l~~~~------------~d~~i~i~d~~~--~~~~~~~~~~~~~v~-~~~~~~~~l~~~~--- 336 (445)
T 2ovr_B 279 -TNRVYSLQF--DGIH-VVSGS------------LDTSIRVWDVET--GNCIHTLTGHQSLTS-GMELKDNILVSGN--- 336 (445)
T ss_dssp -SSCEEEEEE--CSSE-EEEEE------------TTSCEEEEETTT--CCEEEEECCCCSCEE-EEEEETTEEEEEE---
T ss_pred -CCceEEEEE--CCCE-EEEEe------------CCCeEEEEECCC--CCEEEEEcCCcccEE-EEEEeCCEEEEEe---
Confidence 122345566 7776 55543 235788888751 222233333333333 4455677776654
Q ss_pred ccceeEEEecCCCCCCcceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEE
Q 004475 320 TSQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 398 (751)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 398 (751)
....|.+.++.++ ........ ... ..+..+.+.+++.|+..+.+ ..|.+
T Consensus 337 -~dg~i~vwd~~~~--~~~~~~~~~~~~------~~~v~~~~~~~~~l~s~~~d---------------------g~v~i 386 (445)
T 2ovr_B 337 -ADSTVKIWDIKTG--QCLQTLQGPNKH------QSAVTCLQFNKNFVITSSDD---------------------GTVKL 386 (445)
T ss_dssp -TTSCEEEEETTTC--CEEEEECSTTSC------SSCEEEEEECSSEEEEEETT---------------------SEEEE
T ss_pred -CCCeEEEEECCCC--cEEEEEccCCCC------CCCEEEEEECCCEEEEEeCC---------------------CeEEE
Confidence 2245666777664 22222211 101 01112233467777776622 37999
Q ss_pred EecCCCceeEEeec-cchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 399 FDINTGSKERIWES-NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 399 ~d~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
||+.+++....... ........+ ..++|+|++..++...........++++|+..
T Consensus 387 wd~~~~~~~~~~~~~~~~~~~~~v-------~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 387 WDLKTGEFIRNLVTLESGGSGGVV-------WRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EETTTCCEEEEEEECTTGGGTCEE-------EEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EECCCCceeeeeeccccCCCCceE-------EEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99998876544321 100000011 12589999987776655544566788888764
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=104.55 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=56.1
Q ss_pred HHHHHHhC--CeEEEEcCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 546 SSLIFLAR--RFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 546 ~~~~~~~~--G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
....|.+. |+.|+++ +. |+|.+... ..+.....+++..+++++...... .+++.++||||||.+|..++.++
T Consensus 27 ~~~~L~~~~~g~~v~~~---d~-G~g~s~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~lvGhSmGG~ia~~~a~~~ 101 (279)
T 1ei9_A 27 IKKMVEKKIPGIHVLSL---EI-GKTLREDVENSFFLNVNSQVTTVCQILAKDPKL-QQGYNAMGFSQGGQFLRAVAQRC 101 (279)
T ss_dssp HHHHHHHHSTTCCEEEC---CC-SSSHHHHHHHHHHSCHHHHHHHHHHHHHSCGGG-TTCEEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEEE---Ee-CCCCccccccccccCHHHHHHHHHHHHHhhhhc-cCCEEEEEECHHHHHHHHHHHHc
Confidence 44555554 8899994 43 66653210 111122344455555666542212 26899999999999999999999
Q ss_pred CCc-eeEEEEccCCC
Q 004475 623 PHL-FCCGIARSGSY 636 (751)
Q Consensus 623 p~~-~~~~v~~~~~~ 636 (751)
|+. ++.+|++++..
T Consensus 102 ~~~~v~~lv~~~~p~ 116 (279)
T 1ei9_A 102 PSPPMVNLISVGGQH 116 (279)
T ss_dssp CSSCEEEEEEESCCT
T ss_pred CCcccceEEEecCcc
Confidence 984 99999888653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-06 Score=86.40 Aligned_cols=265 Identities=9% Similarity=-0.024 Sum_probs=126.9
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
...+..+||| |+++..... .+.....+.++|.++.++..-...... + ..-...+.|+|+++.
T Consensus 140 Ph~~~~~pdG--i~Vs~~g~~------~g~~~g~v~vlD~~T~~v~~~~~~~~~---~------~~~~Yd~~~~p~~~~- 201 (462)
T 2ece_A 140 LHTVHCGPDA--IYISALGNE------EGEGPGGILMLDHYSFEPLGKWEIDRG---D------QYLAYDFWWNLPNEV- 201 (462)
T ss_dssp EEEEEECSSC--EEEEEEEET------TSCSCCEEEEECTTTCCEEEECCSBCT---T------CCCCCCEEEETTTTE-
T ss_pred ccceeECCCe--EEEEcCCCc------CCCCCCeEEEEECCCCeEEEEEccCCC---C------ccccceEEECCCCCE-
Confidence 3456789999 777665532 233357899999997765432221100 0 011236889999995
Q ss_pred EEEEEec-------cCCCCcc-ccCcccceeeccCCCCCCCC-ceEeEee-c--eeEE--EEEecCCceEEEeeee--cc
Q 004475 257 LYWVEAQ-------DRGDANV-EVSPRDIIYTQPAEPAEGEK-PEILHKL-D--LRFS--VSWCDDSLALVNETWY--KT 320 (751)
Q Consensus 257 i~~~~~~-------~~~~~~~-~~~~~~~l~~~~~~~~~~~~-~~~l~~~-~--~~~~--~~~spdg~~l~~~~~~--~~ 320 (751)
++++.. .+-.... ......+|++++++ +.+ ...+.-. . +... +.++|||++++..... ..
T Consensus 202 -mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 202 -LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp -EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred -EEEccCcCccccccccchhhhhhccCCEEEEEECC---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 443310 0000000 00124689999985 222 2222222 1 1222 3459999987766540 11
Q ss_pred cceeEEEecCCCCCCcceeeeecccccc-cC-----------CCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENV-YS-----------DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~-----------~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
..+.|+++..+.+.....++.+.....+ .. ......+.+||||++|++....
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---------------- 341 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---------------- 341 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT----------------
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC----------------
Confidence 2345655444333122222211111000 00 0112237899999998887632
Q ss_pred CCCCCceeEEEecC-CCceeEEeeccchhhh---hce--eeeecCCcceeeccCCCEEEEEEe-------c---CCCCCe
Q 004475 389 PEGNIPFLDLFDIN-TGSKERIWESNREKYF---ETA--VALVFGQGEEDINLNQLKILTSKE-------S---KTEITQ 452 (751)
Q Consensus 389 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~---~~~--~~~~~~~~~~~~s~dg~~l~~~~~-------~---~~~~~~ 452 (751)
...|.++|+. .++.+.+-....+..+ +.+ ..+...+..+++||||++|+++.+ . ......
T Consensus 342 ----~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~ 417 (462)
T 2ece_A 342 ----IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGW 417 (462)
T ss_dssp ----TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCE
T ss_pred ----CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceE
Confidence 2367777874 3333222111100000 000 011123556899999999998751 1 123455
Q ss_pred EEEE--EcCCCceeEeecCCCCCCCccCCceEEEEEE
Q 004475 453 YHIL--SWPLKKSSQITNFPHPYPTLASLQKEMIKYQ 487 (751)
Q Consensus 453 l~~~--~~~~g~~~~lt~~~~~~~~~~~~~~e~i~~~ 487 (751)
++.+ |.++| .+ ++. +...++......+++++
T Consensus 418 ~~~~~vd~~~G-L~-~~~--~f~vdf~~~~~h~~r~~ 450 (462)
T 2ece_A 418 MVKLNANPSGG-LE-IDK--EFFVDFGEARSHQVRLS 450 (462)
T ss_dssp EEEEEECTTSC-EE-EEE--EEEEECTTSEEEEEEET
T ss_pred EEEEEecCCCC-ce-eCC--CEEeecccCcceeeecC
Confidence 7655 55556 44 332 12223322445555555
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=116.07 Aligned_cols=128 Identities=20% Similarity=0.147 Sum_probs=88.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC-eEEEEcCCCCC-CCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPI-IGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~v~~~~~~~~-~g~g~~ 571 (751)
+...+|.|.. . ..++|+||++|||||..++... .. .....|+++| ++|+.++|+-. .|++..
T Consensus 85 l~l~v~~P~~--~--~~~~Pviv~iHGGg~~~g~~~~--------~~----~~~~~la~~~~~vvv~~nYRlg~~Gf~~~ 148 (498)
T 2ogt_A 85 LYLNIWSPAA--D--GKKRPVLFWIHGGAFLFGSGSS--------PW----YDGTAFAKHGDVVVVTINYRMNVFGFLHL 148 (498)
T ss_dssp CEEEEEESCS--S--SCCEEEEEEECCSTTTSCCTTC--------GG----GCCHHHHHHHTCEEEEECCCCHHHHCCCC
T ss_pred cEEEEEecCC--C--CCCCcEEEEEcCCccCCCCCCC--------Cc----CCHHHHHhCCCEEEEeCCCcCchhhccCc
Confidence 5566778863 1 2358999999999875443211 10 1134567666 99999888622 244333
Q ss_pred CC-----CchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 572 LP-----NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~-----~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
.. ........+.|+..+++|++++. ..|+++|.|+|+|+||.+++.++... +..|+++|+.+|...
T Consensus 149 ~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 149 GDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred hhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 21 11223456889999999998862 36899999999999999998888753 457999999999754
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=118.99 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~-~~g~g~~ 571 (751)
+...+|.|.... +.++|+||++|||||..++.... . .....|+. .|++|+.++|+- ..|++..
T Consensus 97 l~l~v~~P~~~~---~~~~Pviv~iHGGg~~~g~~~~~------~------~~~~~la~~~g~vvv~~nYRlg~~Gf~~~ 161 (543)
T 2ha2_A 97 LYLNVWTPYPRP---ASPTPVLIWIYGGGFYSGAASLD------V------YDGRFLAQVEGAVLVSMNYRVGTFGFLAL 161 (543)
T ss_dssp CEEEEEEESSCC---SSCEEEEEEECCSTTTCCCTTSG------G------GCTHHHHHHHCCEEEEECCCCHHHHHCCC
T ss_pred CeEEEeecCCCC---CCCCeEEEEECCCccccCCCCCC------c------CChHHHHhcCCEEEEEecccccccccccC
Confidence 455667786421 23589999999998755432110 0 11234554 799999988862 2233322
Q ss_pred C-CCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 572 L-PNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 572 ~-~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
. .........+.|+..+++|++++. ..|+++|.|+|+|+||++++.++... +..|+++|+.+|..
T Consensus 162 ~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 162 PGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp TTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 1 111112345789999999998852 36899999999999999998887653 46799999999853
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.2e-09 Score=104.81 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=104.1
Q ss_pred HhCCeEEEEcCCCCCCCCCCC-----CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---
Q 004475 551 LARRFAVLAGPSIPIIGEGDK-----LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--- 622 (751)
Q Consensus 551 ~~~G~~v~~~~~~~~~g~g~~-----~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~--- 622 (751)
...+|.|+. .+.+|+|.+ ...........+++.+.++.+.. ..++.++|||+||.+|..+|.+.
T Consensus 114 L~~~~~v~~---~d~~G~g~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~-----~~p~~l~G~S~GG~vA~~~A~~l~~~ 185 (319)
T 2hfk_A 114 FQEERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAILRAAG-----DAPVVLLGHAGGALLAHELAFRLERA 185 (319)
T ss_dssp TTTTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHHHHHHT-----TSCEEEEEETHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEE---ecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHHHHHHHHHHHHh
Confidence 347899998 555666654 33333456666666666654431 25799999999999999999875
Q ss_pred -CCceeEEEEccCCCCCCCCcc-Ccc-------------cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCC
Q 004475 623 -PHLFCCGIARSGSYNKTLTPF-GFQ-------------TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 687 (751)
Q Consensus 623 -p~~~~~~v~~~~~~d~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp 687 (751)
++.+++++++++......... .+. ............|...........+++|+++++| .|..++
T Consensus 186 ~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~ 264 (319)
T 2hfk_A 186 HGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGD 264 (319)
T ss_dssp HSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSC
T ss_pred hCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCC
Confidence 356899998887532110000 000 0000000000111110000123678899999999 999887
Q ss_pred CChHH-HHHHHHHHHhC-CCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 688 LFPMQ-AERFFDALKGH-GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 688 ~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
... .. .+... ...++++.++ ++|.....+....+.+.+.+||.+...
T Consensus 265 --~~~~~~----~~~~~~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 265 --WQEERG----DWRAHWDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSWLDAIEG 313 (319)
T ss_dssp --CCGGGC----CCSCCCSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred --cccccc----chhhcCCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 443 11 12221 2357889999 489854335778889999999987654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-07 Score=91.49 Aligned_cols=275 Identities=10% Similarity=-0.024 Sum_probs=149.6
Q ss_pred cceeEEeecCCCCCCCCccccc-----CCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eec
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVH-----GYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPL 77 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~-----~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~l 77 (751)
...|.++|..+ ++.++-. ..+-+....... .|+.+++.+. .....|.++|+++++. +.+
T Consensus 16 ~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~--~~~~~lyv~~---------~~~~~v~viD~~t~~~~~~i 80 (328)
T 3dsm_A 16 NATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMV--IRDGIGWIVV---------NNSHVIFAIDINTFKEVGRI 80 (328)
T ss_dssp CBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEE--EETTEEEEEE---------GGGTEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCC----CEEhhhhHhhhcCcccCccceEEE--EECCEEEEEE---------cCCCEEEEEECcccEEEEEc
Confidence 56788888887 7765421 001111122333 3666766654 3347899999998886 445
Q ss_pred cCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
.... ....++++||| .|+++... ..
T Consensus 81 ~~~~------~p~~i~~~~~g-~lyv~~~~------------------------------------------------~~ 105 (328)
T 3dsm_A 81 TGFT------SPRYIHFLSDE-KAYVTQIW------------------------------------------------DY 105 (328)
T ss_dssp ECCS------SEEEEEEEETT-EEEEEEBS------------------------------------------------CS
T ss_pred CCCC------CCcEEEEeCCC-eEEEEECC------------------------------------------------CC
Confidence 3221 24677899999 57665311 14
Q ss_pred EEEEEcC-CCCce-ecCCCc------eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC
Q 004475 158 QLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (751)
Q Consensus 158 ~l~~~~~-~G~~~-~lt~~~------~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (751)
.|+++|+ +++.. .+.-.. ....+++ ++++|++.... ....|.++|+++++.......
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-----------~~~~v~viD~~t~~~~~~i~~-- 170 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-----------YQNRILKIDTETDKVVDELTI-- 170 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-----------TCCEEEEEETTTTEEEEEEEC--
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-----------CCCEEEEEECCCCeEEEEEEc--
Confidence 7888888 56433 332222 3445566 67778776421 134689999987764432111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce-EeEee-ceeEE-EEEe
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKL-DLRFS-VSWC 306 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~-~~~~~-~~~s 306 (751)
...+..+.++|||+ ++++...+...... ....+.|+++|.+ +.... .+.-. ..... ++++
T Consensus 171 -----------g~~p~~i~~~~dG~--l~v~~~~~~~~~~~-~~~~~~v~~id~~---t~~v~~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 171 -----------GIQPTSLVMDKYNK--MWTITDGGYEGSPY-GYEAPSLYRIDAE---TFTVEKQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp -----------SSCBCCCEECTTSE--EEEEBCCBCTTCSS-CBCCCEEEEEETT---TTEEEEEEECCTTCCCEEEEEC
T ss_pred -----------CCCccceEEcCCCC--EEEEECCCccCCcc-ccCCceEEEEECC---CCeEEEEEecCCCCCceeEEEe
Confidence 11234789999997 44433211100000 0012579999875 33322 22211 11344 8999
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 386 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 386 (751)
||++.|++... .|+++|+.++...............+ .++++|++..|+.....
T Consensus 234 ~d~~~lyv~~~------~v~~~d~~t~~~~~~~~~~~~~~~p~------gi~vdp~~g~lyva~~~-------------- 287 (328)
T 3dsm_A 234 GTRDTLYWINN------DIWRMPVEADRVPVRPFLEFRDTKYY------GLTVNPNNGEVYVADAI-------------- 287 (328)
T ss_dssp TTSCEEEEESS------SEEEEETTCSSCCSSCSBCCCSSCEE------EEEECTTTCCEEEEECT--------------
T ss_pred cCCCEEEEEcc------EEEEEECCCCceeeeeeecCCCCceE------EEEEcCCCCeEEEEccc--------------
Confidence 99998877541 79999998752111111111011111 17799977666665410
Q ss_pred CCCCCCCceeEEEecCCCceeEE
Q 004475 387 FTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 387 ~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.......|.+||.+ |+....
T Consensus 288 --~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 288 --DYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp --TSSSEEEEEEECTT-CCEEEE
T ss_pred --ccccCCEEEEECCC-CCEEEE
Confidence 00123478889997 655433
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-07 Score=92.47 Aligned_cols=228 Identities=7% Similarity=-0.124 Sum_probs=128.4
Q ss_pred eEEEEEcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCC
Q 004475 157 AQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~ 233 (751)
..|.++|. +++. .++........++++||| +|+++... ...|+++|+++++... +.......
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~------------~~~v~~iD~~t~~~~~~i~~g~~~~-- 128 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIW------------DYRIFIINPKTYEITGYIECPDMDM-- 128 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBS------------CSEEEEEETTTTEEEEEEECTTCCT--
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECC------------CCeEEEEECCCCeEEEEEEcCCccc--
Confidence 47889999 6754 556444667788999999 67665422 3468999998876542 32111000
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~~ 311 (751)
....+..+++ ++++ ++.+.. ...+.|.++|++ +... ..+.. ..... +.++|||+
T Consensus 129 ------~~~~p~~i~~--~~~~-lyv~~~----------~~~~~v~viD~~---t~~~~~~i~~-g~~p~~i~~~~dG~- 184 (328)
T 3dsm_A 129 ------ESGSTEQMVQ--YGKY-VYVNCW----------SYQNRILKIDTE---TDKVVDELTI-GIQPTSLVMDKYNK- 184 (328)
T ss_dssp ------TTCBCCCEEE--ETTE-EEEEEC----------TTCCEEEEEETT---TTEEEEEEEC-SSCBCCCEECTTSE-
T ss_pred ------cCCCcceEEE--ECCE-EEEEcC----------CCCCEEEEEECC---CCeEEEEEEc-CCCccceEEcCCCC-
Confidence 0012335666 5565 555431 013578889875 2222 22222 22234 78899998
Q ss_pred EEEeeeecc-------cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEcc
Q 004475 312 LVNETWYKT-------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 384 (751)
Q Consensus 312 l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~ 384 (751)
+++...... ....|+++|+.++ +........... ....++++|||+.|++..
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~~~~g~-----~p~~la~~~d~~~lyv~~-------------- 243 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFKFKLGD-----WPSEVQLNGTRDTLYWIN-------------- 243 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEECCTTC-----CCEEEEECTTSCEEEEES--------------
T ss_pred EEEEECCCccCCccccCCceEEEEECCCC--eEEEEEecCCCC-----CceeEEEecCCCEEEEEc--------------
Confidence 555543220 0258999999875 222222111000 011188999999887755
Q ss_pred CCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEe-cCCCCCeEEEEEcCCCce
Q 004475 385 RGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE-SKTEITQYHILSWPLKKS 463 (751)
Q Consensus 385 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~~l~~~~~~~g~~ 463 (751)
. .|+++|.++++......... . ...+..++++|+++.|+++.. .......|+++|++ |+.
T Consensus 244 -------~--~v~~~d~~t~~~~~~~~~~~--------~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 244 -------N--DIWRMPVEADRVPVRPFLEF--------R-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp -------S--SEEEEETTCSSCCSSCSBCC--------C-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred -------c--EEEEEECCCCceeeeeeecC--------C-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 1 68899998887521100000 0 112234689997777777642 22345679999987 653
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-09 Score=116.37 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=87.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCC-CCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPI-IGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~-~g~g~~ 571 (751)
+...+|.|.... .++|+||++|||||..++..... .....|++ .|++|+.++|+-. .|+...
T Consensus 93 l~lnv~~P~~~~----~~~Pv~v~iHGGg~~~g~~~~~~------------~~~~~la~~~~~vvv~~nYRlg~~Gf~~~ 156 (529)
T 1p0i_A 93 LYLNVWIPAPKP----KNATVLIWIYGGGFQTGTSSLHV------------YDGKFLARVERVIVVSMNYRVGALGFLAL 156 (529)
T ss_dssp CEEEEEEESSCC----SSEEEEEEECCSTTTSCCTTCGG------------GCTHHHHHHHCCEEEEECCCCHHHHHCCC
T ss_pred CeEEEeeCCCCC----CCCeEEEEECCCccccCCCCccc------------cChHHHhccCCeEEEEecccccccccccC
Confidence 556677886531 35899999999987654321110 11234555 7999999888622 232221
Q ss_pred -CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 572 -LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 572 -~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
..........+.|+..+++|++++. ..|+++|.|+|+|+||.+++.++... +..|+++|+.+|...
T Consensus 157 ~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 157 PGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CCCCCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 0111112345788999999998852 36899999999999999999888764 457999999999753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=8e-08 Score=98.64 Aligned_cols=93 Identities=12% Similarity=-0.083 Sum_probs=55.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC-Ccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DIC 84 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~-~~~ 84 (751)
.|+++|+.+ ++...-. +-+..- .+.+||||++++...........++....|.++|+.+++...-...+ ...
T Consensus 47 ~vsvID~~t----~~v~~~i--~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGC----GVTLGHS--LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT----TEEEEEE--EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCC----CeEEEEE--eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 677888877 7766533 333333 79999999998776421000001123578999999998743322111 000
Q ss_pred c--cceeeeeEEecCCcEEEEee
Q 004475 85 L--NAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 85 ~--~~~~~~~~wspDg~~l~~~~ 105 (751)
+ -.....+++||||++|+...
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEc
Confidence 0 00124779999999999874
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=118.59 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=86.1
Q ss_pred eEEEEEEcC-----CCCCCCC-CCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC-
Q 004475 493 PLTATLYLP-----PGYDQSK-DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI- 565 (751)
Q Consensus 493 ~i~~~~~~P-----~~~~~~~-~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~- 565 (751)
-+...+|.| ......+ ..++|+||++|||||..++..... + ....|+++|++|+.++|+..
T Consensus 90 cL~lnv~~P~~~~~~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~------~------~~~~l~~~g~vvv~~nYRl~~ 157 (551)
T 2fj0_A 90 CIHANIHVPYYALPRDAADKNRFAGLPVLVFIHGGGFAFGSGDSDL------H------GPEYLVSKDVIVITFNYRLNV 157 (551)
T ss_dssp CCEEEEEEEGGGCCCC--------CEEEEEEECCSTTTSCCSCTTT------C------BCTTGGGGSCEEEEECCCCHH
T ss_pred CeEEEEEecCccccccccccCcCCCCCEEEEEcCCccccCCCcccc------c------CHHHHHhCCeEEEEeCCcCCc
Confidence 356777788 3211110 013899999999987654432110 0 12345678999999888632
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCC
Q 004475 566 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSY 636 (751)
Q Consensus 566 ~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 636 (751)
.|+.............+.|+..+++|++++. ..|+++|.|+|+|+||.+++.++.. .+..|+++|+.+|..
T Consensus 158 ~Gf~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 158 YGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp HHHCCCSSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccccCcccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 2322211111112345788999999998862 3689999999999999999988876 356899999999863
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-09 Score=115.82 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=86.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCC-CCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI-IGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~-~g~g~~ 571 (751)
+...+|.|... ..++|+||++|||||..++..... .....|+ ..|++|+.++|+-. .|+...
T Consensus 95 l~lnv~~P~~~----~~~~Pv~v~iHGG~~~~g~~~~~~------------~~~~~la~~~~~vvv~~nYRlg~~Gf~~~ 158 (537)
T 1ea5_A 95 LYLNIWVPSPR----PKSTTVMVWIYGGGFYSGSSTLDV------------YNGKYLAYTEEVVLVSLSYRVGAFGFLAL 158 (537)
T ss_dssp CEEEEEECSSC----CSSEEEEEEECCSTTTCCCTTCGG------------GCTHHHHHHHTCEEEECCCCCHHHHHCCC
T ss_pred CeEEEeccCCC----CCCCeEEEEECCCcccCCCCCCCc------------cChHHHHhcCCEEEEEeccCccccccccC
Confidence 55667788653 135899999999987654332110 1123455 78999999888622 232221
Q ss_pred -CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCCC
Q 004475 572 -LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 637 (751)
Q Consensus 572 -~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~d 637 (751)
..........+.|...+++|++++. ..|+++|.|+|+|+||.+++.++.. .+..|+++|+.+|...
T Consensus 159 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 159 HGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp TTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CCCCCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 0011112345789999999998862 3689999999999999999888765 2357999999998653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-07 Score=88.07 Aligned_cols=222 Identities=12% Similarity=0.032 Sum_probs=137.5
Q ss_pred eeEEeecCCCCCCCCcccccC---CCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHG---YPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~---~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
.|+++++++ +..+.+.. +.. ......++|+|++++|+++. .....|++++++++..+.+....
T Consensus 11 ~I~~~~~~g----~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d---------~~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 11 KIERLPLER----NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTD---------ISEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEESS----SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEE---------TTTTEEEEEESSSCCCEEEECTT
T ss_pred eEEEEEecC----cccccccceeeecCCCCcEEEEEEecCCCEEEEEE---------CCCCEEEEEecCCCCcEEEEECC
Confidence 688899887 55443211 011 12356889999999998864 34578999999887655443221
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. ....++++|+++.|+++... ...|++
T Consensus 78 ~~----~p~~ia~d~~~~~lyv~d~~------------------------------------------------~~~I~~ 105 (267)
T 1npe_A 78 LG----SPEGIALDHLGRTIFWTDSQ------------------------------------------------LDRIEV 105 (267)
T ss_dssp CC----CEEEEEEETTTTEEEEEETT------------------------------------------------TTEEEE
T ss_pred CC----CccEEEEEecCCeEEEEECC------------------------------------------------CCEEEE
Confidence 10 24678999998889887321 147888
Q ss_pred EcCCCC-ceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSLDGT-AKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~~G~-~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
++++|. .+.+.. . .....++++|++.+|+++.... ....|+++++++...+.+....
T Consensus 106 ~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~----------~~~~I~~~~~dg~~~~~~~~~~---------- 165 (267)
T 1npe_A 106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR----------DNPKIETSHMDGTNRRILAQDN---------- 165 (267)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----------SSCEEEEEETTSCCCEEEECTT----------
T ss_pred EEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC----------CCcEEEEEecCCCCcEEEEECC----------
Confidence 888773 333322 2 4567889999998998875321 1346888888876544432211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWY 318 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 318 (751)
......++++||+++ |+++.. ..+.|++++.+ +.....+....... ...+.|+..|+++..
T Consensus 166 --~~~P~gia~d~~~~~-lyv~d~-----------~~~~I~~~~~~---g~~~~~~~~~~~~P-~gi~~d~~~lyva~~- 226 (267)
T 1npe_A 166 --LGLPNGLTFDAFSSQ-LCWVDA-----------GTHRAECLNPA---QPGRRKVLEGLQYP-FAVTSYGKNLYYTDW- 226 (267)
T ss_dssp --CSCEEEEEEETTTTE-EEEEET-----------TTTEEEEEETT---EEEEEEEEECCCSE-EEEEEETTEEEEEET-
T ss_pred --CCCCcEEEEcCCCCE-EEEEEC-----------CCCEEEEEecC---CCceEEEecCCCCc-eEEEEeCCEEEEEEC-
Confidence 112458999999998 777652 23578888885 33333332221111 234456777776542
Q ss_pred cccceeEEEecCCCC
Q 004475 319 KTSQTRTWLVCPGSK 333 (751)
Q Consensus 319 ~~~~~~l~~~~~~~~ 333 (751)
....|++++.+++
T Consensus 227 --~~~~v~~~d~~~g 239 (267)
T 1npe_A 227 --KTNSVIAMDLAIS 239 (267)
T ss_dssp --TTTEEEEEETTTT
T ss_pred --CCCeEEEEeCCCC
Confidence 2357999999875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-07 Score=95.15 Aligned_cols=126 Identities=5% Similarity=-0.088 Sum_probs=70.4
Q ss_pred ecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc------cccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE------NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
+++++.++|.+. ..++.+|..+. ..+.+...... ..+.-.+...++++|||+.|++.....
T Consensus 219 ~~~~~~~~~vs~-----~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~------ 285 (368)
T 1mda_H 219 ANYPGMLVWAVA-----SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH------ 285 (368)
T ss_dssp ETTTTEEEECBS-----SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC------
T ss_pred cccCCEEEEEcC-----CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc------
Confidence 788888888774 47888888663 11221111000 000000111156999999988765200
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
.+... .....+.++|+++++...-+.... .+..++++|||++++++.... ...+.++|+.
T Consensus 286 -----~~~~~-~~~~~~~ViD~~t~~vv~~i~vg~------------~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~ 345 (368)
T 1mda_H 286 -----SRSCL-AAAENTSSVTASVGQTSGPISNGH------------DSDAIIAAQDGASDNYANSAG--TEVLDIYDAA 345 (368)
T ss_dssp -----SSCTT-SCEEEEEEEESSSCCEEECCEEEE------------EECEEEECCSSSCEEEEEETT--TTEEEEEESS
T ss_pred -----cCccc-ccCCCEEEEECCCCeEEEEEECCC------------CcceEEECCCCCEEEEEccCC--CCeEEEEECC
Confidence 00000 001135588999887644333221 133468999999888876411 3579999999
Q ss_pred CCcee
Q 004475 460 LKKSS 464 (751)
Q Consensus 460 ~g~~~ 464 (751)
+++..
T Consensus 346 t~kvv 350 (368)
T 1mda_H 346 SDQDQ 350 (368)
T ss_dssp SCEEE
T ss_pred CCcEE
Confidence 88754
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-08 Score=97.35 Aligned_cols=188 Identities=14% Similarity=-0.022 Sum_probs=102.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.|+++||.+. ....| .........+|.|+.++ .+|++. ..+++.+.++.
T Consensus 22 ~~~l~~~hg~~~-----------~~~~~-----~~~~~~l~~~~~v~~~d---~~g~~~----------~~~~~~~~i~~ 72 (244)
T 2cb9_A 22 GKNLFCFPPISG-----------FGIYF-----KDLALQLNHKAAVYGFH---FIEEDS----------RIEQYVSRITE 72 (244)
T ss_dssp SSEEEEECCTTC-----------CGGGG-----HHHHHHTTTTSEEEEEC---CCCSTT----------HHHHHHHHHHH
T ss_pred CCCEEEECCCCC-----------CHHHH-----HHHHHHhCCCceEEEEc---CCCHHH----------HHHHHHHHHHH
Confidence 478999999641 11111 11222234689999944 445421 23444444443
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCCCCCCc-cCcccccc---cchh------hHHH
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYNKTLTP-FGFQTEFR---TLWE------ATNV 658 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d~~~~~-~~~~~~~~---~~~~------~~~~ 658 (751)
+ . ...++.++||||||.+|..++.+. ++++.+++++++........ ........ .+.. ....
T Consensus 73 ~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
T 2cb9_A 73 I---Q--PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRC 147 (244)
T ss_dssp H---C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHH
T ss_pred h---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHH
Confidence 3 1 125799999999999999999765 56788888887653211000 00000000 0000 0001
Q ss_pred HHhcCc-ccccCCCCCCEEEEEcC--CCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCc-CCccccHHHHHHHHH
Q 004475 659 YIEMSP-ITHANKIKKPILIIHGE--VDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHV-YAARENVMHVIWETD 733 (751)
Q Consensus 659 ~~~~~~-~~~~~~~~~P~li~~G~--~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~-~~~~~~~~~~~~~~~ 733 (751)
+..+.. ......+++|+++++|+ .|.. + .... ..+.. ....++++++++ +|. +...+....+...+.
T Consensus 148 ~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~--~~~~----~~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~ 219 (244)
T 2cb9_A 148 YQEYWAQLINEGRIKSNIHFIEAGIQTETS-G--AMVL----QKWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANIIL 219 (244)
T ss_dssp HHHHHHHCCCCSCBSSEEEEEECSBCSCCC-H--HHHT----TSSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcCCCEEEEEccCccccc-c--ccch----hHHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHHH
Confidence 111110 12346788999999999 8873 3 3322 12222 123689999997 783 333455667788888
Q ss_pred HHHHHHhc
Q 004475 734 RWLQKYCL 741 (751)
Q Consensus 734 ~fl~~~l~ 741 (751)
+||.....
T Consensus 220 ~~L~~~~~ 227 (244)
T 2cb9_A 220 NILDKINS 227 (244)
T ss_dssp HHHHTC--
T ss_pred HHHhcCcc
Confidence 88876543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-08 Score=99.26 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=74.2
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccC--CCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFS--GMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v 589 (751)
.|+||++||.+.. ...+. .........|.++||.|++ .+.+|+|.+........+..+++.+++
T Consensus 8 ~~~vVlvHG~~~~-----------~~~~~~~~~w~~l~~~L~~~G~~V~~---~d~~g~g~s~~~~~~~~~l~~~i~~~l 73 (320)
T 1ys1_X 8 RYPIILVHGLTGT-----------DKYAGVLEYWYGIQEDLQQRGATVYV---ANLSGFQSDDGPNGRGEQLLAYVKTVL 73 (320)
T ss_dssp SSCEEEECCTTCC-----------SEETTTEESSTTHHHHHHHTTCCEEE---CCCCSSCCSSSTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-----------ccccchHHHHHHHHHHHHhCCCEEEE---EcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5789999996421 10000 1122456788889999999 556677766443444455566666555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+.+ +..++.++||||||.++..++.++|++++++|++++..
T Consensus 74 ~~~------~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 74 AAT------GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HHH------CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred HHh------CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 544 34689999999999999999999999999999999864
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=103.68 Aligned_cols=194 Identities=14% Similarity=0.058 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.|+++||.+. ....|.. +... ...+|.|+. .+.+|+|.+...........+++.+.+..
T Consensus 101 ~~~l~~lhg~~~-----------~~~~~~~----l~~~-L~~~~~v~~---~d~~g~~~~~~~~~~~~~~a~~~~~~i~~ 161 (329)
T 3tej_A 101 GPTLFCFHPASG-----------FAWQFSV----LSRY-LDPQWSIIG---IQSPRPNGPMQTAANLDEVCEAHLATLLE 161 (329)
T ss_dssp SCEEEEECCTTS-----------CCGGGGG----GGGT-SCTTCEEEE---ECCCTTTSHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCcc-----------cchHHHH----HHHh-cCCCCeEEE---eeCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 478999999641 1112211 1122 256899999 45556655322222234444444444433
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeEEEEccCCCCCCC----C-ccCccccc--------------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCCGIARSGSYNKTL----T-PFGFQTEF-------------- 649 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~~~~d~~~----~-~~~~~~~~-------------- 649 (751)
+ . ...++.++||||||.+|..+|.+ .|+++.+++++.+...... . ........
T Consensus 162 ~---~--~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
T 3tej_A 162 Q---Q--PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAA 236 (329)
T ss_dssp H---C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHT
T ss_pred h---C--CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHh
Confidence 2 1 12579999999999999999998 8999999998887543100 0 00000000
Q ss_pred ------ccchhh-HHHHHhc-C--cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 650 ------RTLWEA-TNVYIEM-S--PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 650 ------~~~~~~-~~~~~~~-~--~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
...... ...+... . .......+.+|++++.|+.|..++ ..... .+...-..++++.+++ +|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~--~~~~~----~w~~~~~~~~~~~v~g-~H~~ 309 (329)
T 3tej_A 237 QQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEG--MSPER----AWSPWIAELDIYRQDC-AHVD 309 (329)
T ss_dssp TCCCSCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTT--CCHHH----HHTTTEEEEEEEEESS-CGGG
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCC--CCchh----hHHHhcCCcEEEEecC-ChHH
Confidence 000000 0000000 0 001134567999999999998776 33322 2222224688899985 6764
Q ss_pred C-ccccHHHHHHHHHHHH
Q 004475 720 A-ARENVMHVIWETDRWL 736 (751)
Q Consensus 720 ~-~~~~~~~~~~~~~~fl 736 (751)
+ ..+........+.+||
T Consensus 310 ~~~~~~~~~ia~~l~~~L 327 (329)
T 3tej_A 310 IISPGTFEKIGPIIRATL 327 (329)
T ss_dssp GGSTTTHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHh
Confidence 3 3333455555666665
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-09 Score=109.23 Aligned_cols=109 Identities=8% Similarity=-0.070 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEA 587 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~ 587 (751)
..|+||++||.+. . ....|.......|++ .||.|++ .+.+|+|.+... ........+|+.+
T Consensus 69 ~~p~vvliHG~~~-----------~--~~~~w~~~l~~~l~~~~~~~Vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~ 132 (452)
T 1bu8_A 69 DRKTRFIVHGFID-----------K--GEDGWLLDMCKKMFQVEKVNCIC---VDWRRGSRTEYTQASYNTRVVGAEIAF 132 (452)
T ss_dssp TSEEEEEECCSCC-----------T--TCTTHHHHHHHHHHTTCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCC-----------C--CCchHHHHHHHHHHhhCCCEEEE---EechhcccCchhHhHhhHHHHHHHHHH
Confidence 3689999999641 1 111121123455665 4999999 556677665421 1112355678888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
++++|.++..++.++|.|+||||||++|+.++.++|+++++++++.|.
T Consensus 133 li~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1bu8_A 133 LVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (452)
T ss_dssp HHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCC
Confidence 999997654456689999999999999999999999999999998875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-06 Score=90.06 Aligned_cols=198 Identities=7% Similarity=-0.028 Sum_probs=120.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
....+|+|||+ |+++. .....|++++++++..+.+...... .. ++|+|+|+.|+......
T Consensus 133 P~~la~d~~g~-lyv~d---------~~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~~~---- 192 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAYQ---------RDDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGWEG---- 192 (409)
T ss_dssp EEEEEECSTTE-EEEEE---------TTTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBSST----
T ss_pred ceEEEEeCCCC-EEEEe---------cCCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEecCC----
Confidence 45778999997 54542 3457899999998887766543221 23 89999999888773310
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC-C-Cceec----C-CCceEEeeeeCCC
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G-TAKDF----G-TPAVYTAVEPSPD 185 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-G-~~~~l----t-~~~~~~~~~~SpD 185 (751)
...|++++.. + ..+.+ . .......++++|+
T Consensus 193 -------------------------------------------~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~ 229 (409)
T 3hrp_A 193 -------------------------------------------THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET 229 (409)
T ss_dssp -------------------------------------------TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred -------------------------------------------CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence 0268888873 3 22333 2 2255668999997
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCc-eeeeecCCCceEEEEEecc
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~spdG~~~i~~~~~~~ 264 (751)
+..|++. .. ...|++++.+++....+........ ....+. .++|+|++.. |+++..
T Consensus 230 ~g~lyv~-d~------------~~~I~~~d~~~~~~~~~~~~~~~g~-------~~~~P~~~ia~~p~~g~-lyv~d~-- 286 (409)
T 3hrp_A 230 EEWLYFV-DS------------NKNFGRFNVKTQEVTLIKQLELSGS-------LGTNPGPYLIYYFVDSN-FYMSDQ-- 286 (409)
T ss_dssp SSEEEEE-CT------------TCEEEEEETTTCCEEEEEECCCCSC-------CCCSSCCEEEEETTTTE-EEEEET--
T ss_pred CCeEEEE-EC------------CCcEEEEECCCCCEEEEecccccCC-------CCCCccccEEEeCCCCE-EEEEeC--
Confidence 7778874 22 3468999998776544422111100 011123 8999998776 666541
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeec---------------eeEE-EEEecCCceEEEeeeecc-cceeEEE
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---------------LRFS-VSWCDDSLALVNETWYKT-SQTRTWL 327 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---------------~~~~-~~~spdg~~l~~~~~~~~-~~~~l~~ 327 (751)
....|++++.+ +. ...+.... .... ++++|||+ |+++. . ...+|.+
T Consensus 287 ---------~~~~I~~~~~~---g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad---~~~~~~I~~ 349 (409)
T 3hrp_A 287 ---------NLSSVYKITPD---GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD---GFKGYCLRK 349 (409)
T ss_dssp ---------TTTEEEEECTT---CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE---TTTTCEEEE
T ss_pred ---------CCCEEEEEecC---CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe---CCCCCEEEE
Confidence 23478888774 32 33332211 1134 88999998 55543 2 3468999
Q ss_pred ecCCCC
Q 004475 328 VCPGSK 333 (751)
Q Consensus 328 ~~~~~~ 333 (751)
+++.++
T Consensus 350 ~~~~~G 355 (409)
T 3hrp_A 350 LDILDG 355 (409)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 986553
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-07 Score=96.30 Aligned_cols=83 Identities=10% Similarity=-0.112 Sum_probs=52.2
Q ss_pred cceeEEeecCCCCCCCCccc---ccCCCC-cccccceeecC--------CCCeEEEEEeecccccccCCceeEEEEEcCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKE---VHGYPD-GAKINFVSWSP--------DGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~---l~~~~~-~~~~~~p~~SP--------DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~ 71 (751)
...|.+|++.+ ++... +..+.+ ...+...+||| ||+.||-.+ ....|.++|+.+
T Consensus 110 d~~v~lw~~~~----~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s----------~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 110 DNTVRLIITKN----ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG----------DDCTLIIWRLTD 175 (393)
T ss_dssp TSCEEEEEEET----TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE----------TTSEEEEEEEET
T ss_pred CCcEEEEECCC----CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE----------CCCeEEEEECCC
Confidence 34688999987 65432 222332 23688999998 999999875 235666667655
Q ss_pred CCe-eeccCCCCccccceeeeeEEecCCcE-EEEee
Q 004475 72 GEA-KPLFESPDICLNAVFGSFVWVNNSTL-LIFTI 105 (751)
Q Consensus 72 g~~-~~lt~~~~~~~~~~~~~~~wspDg~~-l~~~~ 105 (751)
+.. ..+..... .+..++|+|++.. |+..+
T Consensus 176 ~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 176 EGPILAGYPLSS-----PGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp TEEEEEEEECSS-----CEEEEEEETTEEEEEEEEE
T ss_pred CceeeeecCCCC-----CcEEEEECCCCCceEEecC
Confidence 543 33322222 3678899999864 55443
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=110.37 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=84.8
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHH-HHH-hCCeEEEEcCCCCCC-CCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL-IFL-ARRFAVLAGPSIPII-GEGD 570 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~G~~v~~~~~~~~~-g~g~ 570 (751)
+...+|.|...... .++|+||++|||||..++. ..+.. ..+.. .++ ..|++|+.++|+... |+..
T Consensus 106 l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~~--~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~ 173 (544)
T 1thg_A 106 LYLNVFRPAGTKPD--AKLPVMVWIYGGAFVYGSS--------AAYPG--NSYVKESINMGQPVVFVSINYRTGPFGFLG 173 (544)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCCTTCCSGG--------GGCCS--HHHHHHHHHTTCCCEEEEECCCCHHHHHCC
T ss_pred eEEEEEeCCCCCCC--CCCcEEEEECCCccccCCc--------cccCc--hHHHHHHhhcCCCEEEEeCCCCCCcccCCC
Confidence 56677888754322 3589999999998765432 11111 11222 222 358999998886332 2111
Q ss_pred CCC--CchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCC
Q 004475 571 KLP--NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGS 635 (751)
Q Consensus 571 ~~~--~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~ 635 (751)
... ........+.|+..+++|++++. ..|+++|.|+|+|+||++++.+++.. +..|+++|+.+|.
T Consensus 174 ~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~ 251 (544)
T 1thg_A 174 GDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp SHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence 000 00011245789999999998852 36899999999999999998887752 4579999999984
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.3e-09 Score=111.89 Aligned_cols=131 Identities=19% Similarity=0.241 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHH-HH-HhCCeEEEEcCCCCCC-CCC
Q 004475 493 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL-IF-LARRFAVLAGPSIPII-GEG 569 (751)
Q Consensus 493 ~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~~v~~~~~~~~~-g~g 569 (751)
-+...+|.|...... .++|+||++|||||..++. ..+. ...+.. .+ ...|++|+.++|+-.. |+.
T Consensus 97 cl~l~v~~P~~~~~~--~~~Pv~v~iHGGg~~~g~~--------~~~~--~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~ 164 (534)
T 1llf_A 97 CLTINVVRPPGTKAG--ANLPVMLWIFGGGFEIGSP--------TIFP--PAQMVTKSVLMGKPIIHVAVNYRVASWGFL 164 (534)
T ss_dssp CCEEEEEECTTCCTT--CCEEEEEEECCSTTTSCCG--------GGSC--CHHHHHHHHHTTCCCEEEEECCCCHHHHHC
T ss_pred CeEEEEEECCCCCCC--CCceEEEEEeCCCcccCCC--------cccC--chHHHHHHHhcCCCEEEEEeCCCCCCCCCC
Confidence 367788889764322 3589999999998765432 1111 111111 22 2468999998886332 221
Q ss_pred CCCC--CchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCC
Q 004475 570 DKLP--NDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGS 635 (751)
Q Consensus 570 ~~~~--~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~ 635 (751)
.... ........+.|+..+++|++++ -..|+++|.|+|+|+||++++.+++.. +..|+++|+.+|.
T Consensus 165 ~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 165 AGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp CSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred CcccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 1100 0001234578999999999885 236899999999999999888777653 4579999999984
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-06 Score=88.74 Aligned_cols=268 Identities=12% Similarity=0.040 Sum_probs=152.0
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
-.+++||++|+..+ ..+.|.++++.+++......+... .+..+.|+ ++.|+..+.+
T Consensus 123 ~~~~~~g~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~--~~~l~s~~~d-------- 178 (445)
T 2ovr_B 123 TCLQFCGNRIVSGS----------DDNTLKVWSAVTGKCLRTLVGHTG----GVWSSQMR--DNIIISGSTD-------- 178 (445)
T ss_dssp EEEEEETTEEEEEE----------TTSCEEEEETTTCCEEEECCCCSS----CEEEEEEE--TTEEEEEETT--------
T ss_pred EEEEEcCCEEEEEE----------CCCcEEEEECCCCcEEEEEcCCCC----CEEEEEec--CCEEEEEeCC--------
Confidence 36889999998853 346788889888875544332221 35677776 5566666432
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEE
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLIT 192 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~ 192 (751)
..|.++++ +|+ ...+..+ ..+..+.|+ ++.|+..
T Consensus 179 -----------------------------------------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 215 (445)
T 2ovr_B 179 -----------------------------------------RTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSG 215 (445)
T ss_dssp -----------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred -----------------------------------------CeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEE
Confidence 46777888 663 3444444 667777774 5666665
Q ss_pred EecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccc
Q 004475 193 SMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (751)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~ 271 (751)
+. ...+.+||+.+++.. .+..+ ...+..+.| ||+. ++...
T Consensus 216 s~-------------dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~--~~~~-l~~~~---------- 256 (445)
T 2ovr_B 216 SR-------------DATLRVWDIETGQCLHVLMGH-------------VAAVRCVQY--DGRR-VVSGA---------- 256 (445)
T ss_dssp ET-------------TSEEEEEESSSCCEEEEEECC-------------SSCEEEEEE--CSSC-EEEEE----------
T ss_pred eC-------------CCEEEEEECCCCcEEEEEcCC-------------cccEEEEEE--CCCE-EEEEc----------
Confidence 43 346889999866543 22211 122345566 7777 55543
Q ss_pred cCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccC
Q 004475 272 VSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYS 350 (751)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (751)
..+.|.++++.. +.....+......+. +.| |++.|+.... ...|.+.++.++ ............
T Consensus 257 --~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~--- 321 (445)
T 2ovr_B 257 --YDFMVKVWDPET--ETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG--NCIHTLTGHQSL--- 321 (445)
T ss_dssp --TTSCEEEEEGGG--TEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC--CEEEEECCCCSC---
T ss_pred --CCCEEEEEECCC--CcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC--CEEEEEcCCccc---
Confidence 235788888741 222223333344455 666 8888776552 245777777664 222222111111
Q ss_pred CCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcc
Q 004475 351 DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGE 430 (751)
Q Consensus 351 ~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 430 (751)
...++++++.|+..+.+ ..|.+||+.+++.......... ....+.
T Consensus 322 -----v~~~~~~~~~l~~~~~d---------------------g~i~vwd~~~~~~~~~~~~~~~-~~~~v~-------- 366 (445)
T 2ovr_B 322 -----TSGMELKDNILVSGNAD---------------------STVKIWDIKTGQCLQTLQGPNK-HQSAVT-------- 366 (445)
T ss_dssp -----EEEEEEETTEEEEEETT---------------------SCEEEEETTTCCEEEEECSTTS-CSSCEE--------
T ss_pred -----EEEEEEeCCEEEEEeCC---------------------CeEEEEECCCCcEEEEEccCCC-CCCCEE--------
Confidence 13466678877776622 3788999988876544432110 000111
Q ss_pred eeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 431 EDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 431 ~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
+++.+++.|+... . -+.+.++|+.+++..
T Consensus 367 -~~~~~~~~l~s~~-~---dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 367 -CLQFNKNFVITSS-D---DGTVKLWDLKTGEFI 395 (445)
T ss_dssp -EEEECSSEEEEEE-T---TSEEEEEETTTCCEE
T ss_pred -EEEECCCEEEEEe-C---CCeEEEEECCCCcee
Confidence 2333566555442 2 357999999887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.5e-07 Score=96.10 Aligned_cols=208 Identities=9% Similarity=-0.019 Sum_probs=113.1
Q ss_pred ccceeecC-----CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEE-e-cCCcEEEEee
Q 004475 33 INFVSWSP-----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-V-NNSTLLIFTI 105 (751)
Q Consensus 33 ~~~p~~SP-----DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~w-s-pDg~~l~~~~ 105 (751)
..+|..|. ||++++. .. .....|.++|+++.+..+++..+... ....+++ + ||+++|+...
T Consensus 87 ~hh~~~s~t~g~~DG~~lfV-nd--------~~~~rVavIdl~t~~~~~ii~ip~g~---~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 87 LHHVHMSFTEGKYDGRFLFM-ND--------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp BCCEEEEEETTEEEEEEEEE-EE--------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred CCccccCCCCCCcCCCEEEE-Ec--------CCCCEEEEEECCCceEeeEEeCCCCC---CCcceeeeecCCCcEEEEec
Confidence 45699999 9987755 32 55688999999998866654433211 2456676 5 9999997774
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhh--hheeeEEEEEcC-CCC-ceecCCCceEEeee
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFD--YYTTAQLVLGSL-DGT-AKDFGTPAVYTAVE 181 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~G~-~~~lt~~~~~~~~~ 181 (751)
...... +.|+..+. ......+-++|. +.+ ..++.-++....++
T Consensus 155 ~~~~p~---------------------------------~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~ 201 (595)
T 1fwx_A 155 EDETPL---------------------------------VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCD 201 (595)
T ss_dssp CSCEES---------------------------------SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEE
T ss_pred cccccc---------------------------------CCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceE
Confidence 321100 00110000 002356778888 442 23333223445678
Q ss_pred eCCCCceEEEEEecCCccccc--ccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKV--PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~--~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~ 259 (751)
.||||+++++++.+.+..... ........+.+.+... .....++|++ .+.
T Consensus 202 ~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~---------------------------~~~~v~~Gk~-~~i 253 (595)
T 1fwx_A 202 ADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE---------------------------IEKAIAAGDY-QEL 253 (595)
T ss_dssp ECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH---------------------------HHHHHHHTCS-EEE
T ss_pred ECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc---------------------------eeEeccCCCe-eEE
Confidence 999999999987654311100 0001112334444221 1245677876 333
Q ss_pred EEeccCCCCccccCcccceeeccCCCCCCCC-ceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+.+-++|.....+.. ...+........+.+||||++++.+. ....++.+++..+
T Consensus 254 ----------------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~---~~s~~VsVid~~~ 308 (595)
T 1fwx_A 254 ----------------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG---KLSPTVTVLDVTR 308 (595)
T ss_dssp ----------------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC---TTSSBEEEEEGGG
T ss_pred ----------------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC---CCCCeEEEEECcc
Confidence 247777764110112 22333322222278999999877654 2335677777764
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=107.22 Aligned_cols=108 Identities=7% Similarity=-0.037 Sum_probs=76.5
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-CeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. . ....|.......|+++ ||.|++ .+.+|+|.+... ........+|+.++
T Consensus 70 ~p~vvliHG~~~-----------~--~~~~w~~~~~~~l~~~~~~~Vi~---~D~~g~G~S~~~~~~~~~~~~~~dl~~~ 133 (452)
T 1w52_X 70 RKTHFVIHGFRD-----------R--GEDSWPSDMCKKILQVETTNCIS---VDWSSGAKAEYTQAVQNIRIVGAETAYL 133 (452)
T ss_dssp SCEEEEECCTTC-----------C--SSSSHHHHHHHHHHTTSCCEEEE---EECHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCC-----------C--CCchHHHHHHHHHHhhCCCEEEE---EecccccccccHHHHHhHHHHHHHHHHH
Confidence 689999999531 1 1011221234556654 999999 556677665321 11223456788888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++|.++..++.+++.|+||||||++|+.++.++|+++++++++.|.
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa 180 (452)
T 1w52_X 134 IQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPA 180 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEecccc
Confidence 89887653345679999999999999999999999999999998875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-06 Score=89.41 Aligned_cols=179 Identities=11% Similarity=0.087 Sum_probs=119.4
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|+.+++++++...+..... ....++|.+.++.|+++-..
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~-----~~~gl~~d~~~~~ly~~D~~--------------------------------- 136 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLE-----NAIALDFHHRRELVFWSDVT--------------------------------- 136 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCS-----CEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CccceeeccCCCcEEEEecCCC-----ccEEEEEecCCCeEEEEeCC---------------------------------
Confidence 3678999998877666654333 24678999988899987321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
...|++++++| ..+.+.. . .....+++.+.+..|+++... ...|++++++
T Consensus 137 ---------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~------------~~~I~~~~~d 189 (386)
T 3v65_B 137 ---------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 189 (386)
T ss_dssp ---------------TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT------------TTEEEECBTT
T ss_pred ---------------CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC------------CCeEEEEeCC
Confidence 14788999866 4444422 2 344578888888888887443 3468888888
Q ss_pred CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee
Q 004475 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (751)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (751)
+...+.+.... -..+++++++|++.. |+++... ....|++++.+ +...+.+...
T Consensus 190 g~~~~~l~~~~------------l~~P~giavdp~~g~-ly~td~~----------~~~~I~r~~~d---G~~~~~~~~~ 243 (386)
T 3v65_B 190 GAHRKVLLWQS------------LEKPRAIALHPMEGT-IYWTDWG----------NTPRIEASSMD---GSGRRIIADT 243 (386)
T ss_dssp SCSCEEEECSS------------CSCEEEEEEETTTTE-EEEEECS----------SSCEEEEEETT---SCSCEEEECS
T ss_pred CCceEEeecCC------------CCCCcEEEEEcCCCe-EEEeccC----------CCCEEEEEeCC---CCCcEEEEEC
Confidence 76544442211 123468899999887 8886411 12579999986 5555555433
Q ss_pred cee-EE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 298 DLR-FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 298 ~~~-~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
... .. ++|+|+++.|+++. .....|+++++++.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD---~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVD---AKHHVIERANLDGS 278 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEE---TTTTEEEEECTTSC
T ss_pred CCCCeeeEEEeCCCCEEEEEE---CCCCEEEEEeCCCC
Confidence 322 34 89999999888865 33468999999874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-06 Score=85.74 Aligned_cols=222 Identities=9% Similarity=0.025 Sum_probs=138.0
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..|+.++++| +...+... .....++|.++++.|+++... ...|++++++++..+.+.....
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~~----- 158 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTGL----- 158 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCCEEEEECSSC-----
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------------CCcEEEEecCCCCcEEEEeCCC-----
Confidence 4788899966 55555444 667889999999899887433 3478999999876554422111
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l 312 (751)
....++++++.+.. ||++.. ....|++++++ +...+.+.... .... +++.|++..|
T Consensus 159 -------~~p~glavd~~~g~-lY~~d~-----------~~~~I~~~~~d---g~~~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 159 -------ESPGGLAVDWVHDK-LYWTDS-----------GTSRIEVANLD---GAHRKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp -------SCCCCEEEETTTTE-EEEEET-----------TTTEEEECBTT---SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred -------CCccEEEEEeCCCe-EEEEcC-----------CCCeEEEEeCC---CCceEEeecCCCCCCcEEEEEcCCCeE
Confidence 12347899988887 888652 23478888886 55555554332 2334 7889999888
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+++.... ...|+++++++. ..+.+.......-. .++++|+++.|++... .
T Consensus 217 y~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~~Pn------Glavd~~~~~lY~aD~--------------------~ 266 (386)
T 3v65_B 217 YWTDWGN--TPRIEASSMDGS--GRRIIADTHLFWPN------GLTIDYAGRRMYWVDA--------------------K 266 (386)
T ss_dssp EEEECSS--SCEEEEEETTSC--SCEEEECSSCSCEE------EEEEEGGGTEEEEEET--------------------T
T ss_pred EEeccCC--CCEEEEEeCCCC--CcEEEEECCCCCee------eEEEeCCCCEEEEEEC--------------------C
Confidence 8865322 368999999884 33444332222111 1889999988988772 3
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
...|++++++++..+.+..... .++.+ +++ +++.|+++.+. ...|++++..+|+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~----~~P~g-------iav--~~~~ly~td~~---~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGL----PHPFA-------ITV--FEDSLYWTDWH---TKSINSANKFTGKN 321 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSC----SSEEE-------EEE--ETTEEEEEETT---TTEEEEEETTTCCS
T ss_pred CCEEEEEeCCCCeeEEEEECCC----CCceE-------EEE--ECCEEEEeeCC---CCeEEEEECCCCcc
Confidence 3478899987654444433221 01222 233 45567776532 45688888555543
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-08 Score=92.37 Aligned_cols=182 Identities=10% Similarity=0.018 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.|+++||.+. ....| ..+...+ .. |.|+.++ .+|++. ..+++.+.++.
T Consensus 17 ~~~l~~~hg~~~-----------~~~~~----~~~~~~l-~~-~~v~~~d---~~g~~~----------~~~~~~~~i~~ 66 (230)
T 1jmk_C 17 EQIIFAFPPVLG-----------YGLMY----QNLSSRL-PS-YKLCAFD---FIEEED----------RLDRYADLIQK 66 (230)
T ss_dssp SEEEEEECCTTC-----------CGGGG----HHHHHHC-TT-EEEEEEC---CCCSTT----------HHHHHHHHHHH
T ss_pred CCCEEEECCCCC-----------chHHH----HHHHHhc-CC-CeEEEec---CCCHHH----------HHHHHHHHHHH
Confidence 478999999641 11111 1223333 34 9999844 445432 23444455544
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCCCCCCccC---ccc----------ccc---cc
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYNKTLTPFG---FQT----------EFR---TL 652 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d~~~~~~~---~~~----------~~~---~~ 652 (751)
+. ...++.++|||+||.+|..++.+. ++.+++++++++........+. ... ... ..
T Consensus 67 ~~-----~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (230)
T 1jmk_C 67 LQ-----PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSE 141 (230)
T ss_dssp HC-----CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSH
T ss_pred hC-----CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhH
Confidence 42 125799999999999999998765 3568888887764321100000 000 000 00
Q ss_pred hh--hH----HHHHhcCc-ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCC--cCCcc
Q 004475 653 WE--AT----NVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHH--VYAAR 722 (751)
Q Consensus 653 ~~--~~----~~~~~~~~-~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H--~~~~~ 722 (751)
.- .. ..+..+.. .....++++|+++++|++|..+| .. . ..+.. ....++++.+++ +| .+. .
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~-~----~~w~~~~~~~~~~~~i~g-~H~~~~~-~ 212 (230)
T 1jmk_C 142 AVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--EW-L----ASWEEATTGAYRMKRGFG-THAEMLQ-G 212 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--TT-E----ECSGGGBSSCEEEEECSS-CGGGTTS-H
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCc--cc-c----chHHHhcCCCeEEEEecC-ChHHHcC-c
Confidence 00 00 00111100 02346788999999999999875 22 1 11222 224588999997 78 443 3
Q ss_pred ccHHHHHHHHHHHHH
Q 004475 723 ENVMHVIWETDRWLQ 737 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~ 737 (751)
+....+...+.+||.
T Consensus 213 ~~~~~~~~~i~~~l~ 227 (230)
T 1jmk_C 213 ETLDRNAGILLEFLN 227 (230)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHh
Confidence 444455555666653
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=110.62 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=77.6
Q ss_pred CCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCC-CCCCCCCC-------CCCchhHHH
Q 004475 510 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PIIGEGDK-------LPNDRFVEQ 580 (751)
Q Consensus 510 ~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~-~~~g~g~~-------~~~~~~~~~ 580 (751)
.++|+||++|||||..++.... .+ ....|+. .|++|+.++|+ +..|+... .........
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~~~------~~------~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~ 206 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSATLD------IY------NADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV 206 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTTCG------GG------CCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH
T ss_pred CCCCEEEEECCCcccCCCCCCC------CC------CchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcc
Confidence 3589999999998765432110 01 1234454 69999998886 22232211 000111233
Q ss_pred HHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 581 LVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
.+.|+..+++|+++.- ..|+++|.|+|+|+||+++..++... ...|+++|+.+|..
T Consensus 207 gl~D~~~al~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 207 GLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 5789999999999862 35899999999999999998887653 35799999999864
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-06 Score=91.39 Aligned_cols=101 Identities=9% Similarity=0.091 Sum_probs=62.4
Q ss_pred ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..++|+|+ ++.|+..+.+ ..+.+||+.++....... .....+..++|||||
T Consensus 150 ~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD~~~~~~~~~~~------------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQVTETVKVCATL------------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETT-------------SCEEEEEESSSEEEEEEE------------CGGGCEEEEEECTTS
T ss_pred CceEEEEECCCCCCEEEEEECC-------------CeEEEEEcCCCcceeecc------------CCCCceeEEEEcCCC
Confidence 67889999998 5666655433 368899998763321110 112346689999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-------ceeEE-EEEecCCceEEEee
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~spdg~~l~~~~ 316 (751)
+. |+... ..+.|.+++.. +.....+... ...+. +.|++++..++...
T Consensus 205 ~~-lasgs------------~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 205 KQ-LAVGK------------QNGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp SC-EEEEE------------TTSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CE-EEEEc------------CCCcEEEEccC---CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 98 66544 23577888774 2222222211 12455 99999998876544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-06 Score=81.79 Aligned_cols=222 Identities=11% Similarity=-0.004 Sum_probs=121.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+++|||+ |+++.. .....|++++..++..+.+...... ....++++|||+ |++....
T Consensus 25 ~p~~i~~~~~g~-l~v~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~----~p~~i~~~~~g~-l~v~~~~---- 86 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE--------GMYGRVVKLATGSTGTTVLPFNGLY----QPQGLAVDGAGT-VYVTDFN---- 86 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC--------SSSCEEEEECC-----EECCCCSCC----SCCCEEECTTCC-EEEEETT----
T ss_pred CccceEECCCCC-EEEEcc--------CCCCcEEEecCCCcccceEeeCCcC----CcceeEECCCCC-EEEEcCC----
Confidence 355678999997 444132 3446888998766655544322111 245789999998 6555210
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC--ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~--~~~~~~~~SpDG~~ 188 (751)
..|++++.+| ....+... .....++++|||+
T Consensus 87 ---------------------------------------------~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~- 120 (270)
T 1rwi_B 87 ---------------------------------------------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA- 120 (270)
T ss_dssp ---------------------------------------------TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-
T ss_pred ---------------------------------------------CEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-
Confidence 4688888866 33333322 4567899999997
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.... ...|++++..+....... .. ....+..++++|||+ ++++..
T Consensus 121 l~v~~~~------------~~~i~~~~~~~~~~~~~~-~~-----------~~~~p~~i~~~~~g~--l~v~~~------ 168 (270)
T 1rwi_B 121 VYVADRG------------NNRVVKLAAGSKTQTVLP-FT-----------GLNDPDGVAVDNSGN--VYVTDT------ 168 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTCCSCEECC-CC-----------SCCSCCCEEECTTCC--EEEEEG------
T ss_pred EEEEECC------------CCEEEEEECCCceeEeec-cc-----------cCCCceeEEEeCCCC--EEEEEC------
Confidence 6555322 235778865543222110 00 012345789999996 555431
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccc
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 346 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 346 (751)
..+.|++++.+ +.......... .... +.++++| .|+++.. ....|++++.++. ....+......
T Consensus 169 -----~~~~i~~~~~~---~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~---~~~~v~~~~~~~~--~~~~~~~~~~~ 234 (270)
T 1rwi_B 169 -----DNNRVVKLEAE---SNNQVVLPFTDITAPWGIAVDEAG-TVYVTEH---NTNQVVKLLAGST--TSTVLPFTGLN 234 (270)
T ss_dssp -----GGTEEEEECTT---TCCEEECCCSSCCSEEEEEECTTC-CEEEEET---TTSCEEEECTTCS--CCEECCCCSCS
T ss_pred -----CCCEEEEEecC---CCceEeecccCCCCceEEEECCCC-CEEEEEC---CCCcEEEEcCCCC--cceeeccCCCC
Confidence 12478888875 33222221111 2344 8899999 4555442 2357888988774 22222111111
Q ss_pred cccCCCCCCCeeeCCCCCEEEEee
Q 004475 347 NVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 347 ~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
... .+++++||+ |++..
T Consensus 235 ~p~------~i~~~~~g~-l~v~~ 251 (270)
T 1rwi_B 235 TPL------AVAVDSDRT-VYVAD 251 (270)
T ss_dssp CEE------EEEECTTCC-EEEEE
T ss_pred Cce------eEEECCCCC-EEEEE
Confidence 111 177899996 55554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-05 Score=82.38 Aligned_cols=221 Identities=9% Similarity=0.028 Sum_probs=135.9
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
..|+.++++| ....+... .....++|+++++.|+++... ...|++++++++..+.+....
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------------~~~I~r~~~~g~~~~~~~~~~------ 114 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------------LDRILRANLNGSNVEEVVSTG------ 114 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSS------
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------------CCceEEEecCCCCceEEEeCC------
Confidence 4688889977 44444444 667789999999999887433 346899999887655442211
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLAL 312 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l 312 (751)
.....++++.+.+.. ||++.. ....|++++++ +...+.+.... .... +++.|++..|
T Consensus 115 ------~~~p~glavd~~~g~-ly~~d~-----------~~~~I~~~~~d---G~~~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 115 ------LESPGGLAVDWVHDK-LYWTDS-----------GTSRIEVANLD---GAHRKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp ------CSCCCEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred ------CCCccEEEEecCCCe-EEEEcC-----------CCCeEEEEcCC---CCceEEEEeCCCCCcceEEEecCcCeE
Confidence 012347899988887 888652 23578888886 55555554322 2334 7899988888
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+++.... ...|+++++++. ..+.+....... ...++++|++..|++... .
T Consensus 174 y~td~~~--~~~I~r~~~dG~--~~~~~~~~~~~~------PnGla~d~~~~~lY~aD~--------------------~ 223 (349)
T 3v64_C 174 YWTDWGN--TPRIEASSMDGS--GRRIIADTHLFW------PNGLTIDYAGRRMYWVDA--------------------K 223 (349)
T ss_dssp EEEECSS--SCEEEEEETTSC--SCEESCCSSCSC------EEEEEEETTTTEEEEEET--------------------T
T ss_pred EEeccCC--CCEEEEEeCCCC--CcEEEEECCCCC------cceEEEeCCCCEEEEEEC--------------------C
Confidence 8876322 368999999884 334443322211 111889999999988772 2
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
...|++++++++..+.+..... ..+.+ +++ +++.|+++.+. ...|++++..+|+
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~----~~P~g-------iav--~~~~ly~td~~---~~~V~~~~~~~G~ 277 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGL----PHPFA-------ITV--FEDSLYWTDWH---TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSC----SSEEE-------EEE--ETTEEEEEETT---TTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCceEEEEeCCC----CCceE-------EEE--ECCEEEEecCC---CCeEEEEEccCCC
Confidence 3478999987654444433221 11222 233 34566666433 3467777754444
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-08 Score=110.75 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=83.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~-~~g~g~~ 571 (751)
+...+|.|..... ...++|+||++|||||..++..... +..........|+. .|++|+.++|+- ..|+...
T Consensus 81 l~lnv~~P~~~~~-~~~~~PV~v~iHGGg~~~Gs~~~~~------~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~ 153 (579)
T 2bce_A 81 LYLNIWVPQGRKE-VSHDLPVMIWIYGGAFLMGASQGAN------FLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CEEEEEEEECSSS-CCCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCC-CCCCCeEEEEECCCcccCCCCCccc------cccccccChHHHhcCCCEEEEEeCCccccccCCcC
Confidence 5666778865321 1235899999999987654332100 00000011234444 579999988862 2232211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~ 635 (751)
..........+.|+..+++|++++. ..|+++|.|+|+|+||+++..++.. ....|+++|+.+|.
T Consensus 154 ~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 154 GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 1000011224678999999998752 3689999999999999999988765 34689999998874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.9e-06 Score=85.49 Aligned_cols=179 Identities=11% Similarity=0.090 Sum_probs=118.9
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|+.+++++.+...+..... ....++|.+.++.|+++-..
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~-----~~~~l~~d~~~~~ly~~D~~--------------------------------- 93 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLE-----NAIALDFHHRRELVFWSDVT--------------------------------- 93 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCS-----CEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred ccceEEEeCCCCeeEEeecCCC-----ceEEEEEeccccEEEEEecc---------------------------------
Confidence 3678899988877666644332 24678999988899987321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
...|++++++| ..+.+.. . .....+++.+.+..|+++... ...|++++++
T Consensus 94 ---------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------------~~~I~~~~~d 146 (349)
T 3v64_C 94 ---------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------------TSRIEVANLD 146 (349)
T ss_dssp ---------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETT
T ss_pred ---------------CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------------CCeEEEEcCC
Confidence 14788899866 4444432 2 445678888888888887443 3468899998
Q ss_pred CceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee
Q 004475 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (751)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (751)
+...+.+.... -..+++++++|++.. |+++... ....|++++++ +...+.+...
T Consensus 147 G~~~~~l~~~~------------l~~P~~iavdp~~g~-ly~td~~----------~~~~I~r~~~d---G~~~~~~~~~ 200 (349)
T 3v64_C 147 GAHRKVLLWQS------------LEKPRAIALHPMEGT-IYWTDWG----------NTPRIEASSMD---GSGRRIIADT 200 (349)
T ss_dssp SCSCEEEECTT------------CSCEEEEEEETTTTE-EEEEECS----------SSCEEEEEETT---SCSCEESCCS
T ss_pred CCceEEEEeCC------------CCCcceEEEecCcCe-EEEeccC----------CCCEEEEEeCC---CCCcEEEEEC
Confidence 77554442211 123468899998887 8886521 12579999886 5555554332
Q ss_pred ce-eEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 298 DL-RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 298 ~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.. ... ++++|+++.|+++. .....|+.+++++.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD---~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVD---AKHHVIERANLDGS 235 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC
T ss_pred CCCCcceEEEeCCCCEEEEEE---CCCCEEEEEeCCCC
Confidence 22 234 89999999998865 23458999999874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-06 Score=82.88 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=35.7
Q ss_pred eEEeeeeCC---CCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeec
Q 004475 176 VYTAVEPSP---DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (751)
Q Consensus 176 ~~~~~~~Sp---DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp 251 (751)
.+..++||| ||+.|+-.+.+ ..|.+||+++++. +.+..+... ...+..++|||
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D-------------~TIkIWDl~TGk~l~tL~g~~~~----------v~~v~~vafSp 236 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIM-------------NNIVIWNLKTGQLLKKMHIDDSY----------QASVCHKAYSE 236 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETT-------------SEEEEEETTTCCEEEEEECCC-------------CCCEEEEEEE
T ss_pred ceeeEEeeccCCCCceEEEecCC-------------CcEEEEECCCCcEEEEEcCCCcc----------eeeeEEEEECC
Confidence 344567777 66777665443 4688999997753 444321110 01234568999
Q ss_pred CCCceEEE
Q 004475 252 DKPSTLYW 259 (751)
Q Consensus 252 dG~~~i~~ 259 (751)
||+. ++.
T Consensus 237 dG~~-lvs 243 (356)
T 2w18_A 237 MGLL-FIV 243 (356)
T ss_dssp TTEE-EEE
T ss_pred CCCE-EEE
Confidence 9987 443
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=93.59 Aligned_cols=103 Identities=8% Similarity=-0.114 Sum_probs=71.3
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.+.||++||.+. +. ...|...+...|.++||.|+. .+.+|+|... .....+++.+.++.
T Consensus 65 ~~pVVLvHG~~~-----------~~--~~~w~~~l~~~L~~~Gy~V~a---~DlpG~G~~~-----~~~~~~~la~~I~~ 123 (316)
T 3icv_A 65 SKPILLVPGTGT-----------TG--PQSFDSNWIPLSAQLGYTPCW---ISPPPFMLND-----TQVNTEYMVNAITT 123 (316)
T ss_dssp SSEEEEECCTTC-----------CH--HHHHTTTHHHHHHHTTCEEEE---ECCTTTTCSC-----HHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCC-----------Cc--HHHHHHHHHHHHHHCCCeEEE---ecCCCCCCCc-----HHHHHHHHHHHHHH
Confidence 467999999531 10 011111345677889999998 4455665431 23446677788888
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEEccCCCC
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSGSYN 637 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~~~~d 637 (751)
+.+... .+++.|+||||||.++.+++..+ +++++.+|++++...
T Consensus 124 l~~~~g--~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 124 LYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHhC--CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 876532 36899999999999997777764 589999999998754
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-08 Score=102.43 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe---EEEEcCCCCCCCCCCC-----C---C-------
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF---AVLAGPSIPIIGEGDK-----L---P------- 573 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~---~v~~~~~~~~~g~g~~-----~---~------- 573 (751)
.|.||++||.+. +...| ..+...|+++|| .|++ .+..|+|.+ . .
T Consensus 22 ~ppVVLlHG~g~-----------s~~~w----~~la~~La~~Gy~~~~Via---~DlpG~G~S~~~~~Dv~~~G~~~~~G 83 (484)
T 2zyr_A 22 FRPVVFVHGLAG-----------SAGQF----ESQGMRFAANGYPAEYVKT---FEYDTISWALVVETDMLFSGLGSEFG 83 (484)
T ss_dssp CCCEEEECCTTC-----------CGGGG----HHHHHHHHHTTCCGGGEEE---ECCCHHHHHHHTTTSTTTTTGGGHHH
T ss_pred CCEEEEECCCCC-----------CHHHH----HHHHHHHHHcCCCcceEEE---EECCCCCccccccccccccccccccc
Confidence 578999999641 11111 245667888999 6888 445565532 0 0
Q ss_pred -------------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEE
Q 004475 574 -------------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIA 631 (751)
Q Consensus 574 -------------------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~ 631 (751)
.........+++.+.++.+.++. +..++.++||||||.+++.++.++| ++++++|+
T Consensus 84 ~n~~p~id~~~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVl 161 (484)
T 2zyr_A 84 LNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLIL 161 (484)
T ss_dssp HHHGGGSCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEE
T ss_pred cccccccccccccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEE
Confidence 00122344667777777776653 2368999999999999999999987 48999999
Q ss_pred ccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCC--CCCChHHHHHHHHHHHhCCCcEEE
Q 004475 632 RSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDK--VGLFPMQAERFFDALKGHGALSRL 709 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~--vp~~~~~~~~~~~~l~~~~~~~~~ 709 (751)
+++..+.. . ....++|.+.|..|.. ++.+.. .+. ...+.
T Consensus 162 Iapp~~~d----------------------------~-p~g~~~L~ilG~~d~~p~V~~pss-------~L~---~ga~~ 202 (484)
T 2zyr_A 162 LDGVWGVD----------------------------A-PEGIPTLAVFGNPKALPALGLPEE-------KVV---YNATN 202 (484)
T ss_dssp ESCCCSEE----------------------------C-CTTSCEEEEEECGGGSCCSSCCSS-------CCE---ETSEE
T ss_pred ECCccccc----------------------------c-CcCCHHHHHhCCCCcCCcccChhH-------hcC---CCceE
Confidence 99875410 0 0235677777765531 110011 111 02356
Q ss_pred EEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 710 VLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 710 ~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+++++++|..... ..+.+..+++||...
T Consensus 203 v~i~~a~H~~ll~--dp~v~~~Vl~fL~~~ 230 (484)
T 2zyr_A 203 VYFNNMTHVQLCT--SPETFAVMFEFINGY 230 (484)
T ss_dssp EEETTCCHHHHHH--CHHHHHHHHHHHHSS
T ss_pred EEECCCCcccccc--CHHHHHHHHHHhccc
Confidence 6789999986522 235666789999853
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=98.25 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=66.9
Q ss_pred HHHh-CCeEEEEcCCCCCCCCCCCCCCch------------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHH
Q 004475 549 IFLA-RRFAVLAGPSIPIIGEGDKLPNDR------------FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFM 614 (751)
Q Consensus 549 ~~~~-~G~~v~~~~~~~~~g~g~~~~~~~------------~~~~~~~d~~~~v~~l~~~~-~id~~~i~l~G~S~GG~~ 614 (751)
.+++ .|+.|++ .+.+|+|.+..... ..++.++|+...+++++... .....+++++||||||.+
T Consensus 63 ~lA~~~~~~Vi~---~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG~l 139 (446)
T 3n2z_B 63 DVAEELKAMLVF---AEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGML 139 (446)
T ss_dssp HHHHHHTEEEEE---ECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHHHH
T ss_pred HHHHHhCCcEEE---EecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHHHH
Confidence 4444 4889999 67778888743211 25678999999999998752 223468999999999999
Q ss_pred HHHHHHhCCCceeEEEEccCCCC
Q 004475 615 TAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 615 a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
|++++.++|+.+.++|+.++++.
T Consensus 140 A~~~~~~yP~~v~g~i~ssapv~ 162 (446)
T 3n2z_B 140 AAWFRMKYPHMVVGALAASAPIW 162 (446)
T ss_dssp HHHHHHHCTTTCSEEEEETCCTT
T ss_pred HHHHHHhhhccccEEEEeccchh
Confidence 99999999999999998876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-05 Score=81.86 Aligned_cols=179 Identities=12% Similarity=-0.024 Sum_probs=115.4
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|.++++++++...+..... ....++|+++++.|+++...
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~-----~p~g~~~d~~~~~ly~~D~~--------------------------------- 50 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS--------------------------------- 50 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCS-----SEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CCeEEEEECCCcceEehhcCCC-----ceEEEEEEeCCCEEEEEECC---------------------------------
Confidence 3679999999887665543222 24678999998899988321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-----CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
...|++++++| ..+.+.. . .....+++.+.++.|+++... ...|.+
T Consensus 51 ---------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~------------~~~I~~ 103 (316)
T 1ijq_A 51 ---------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (316)
T ss_dssp ---------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ---------------CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC------------CCEEEE
Confidence 14788888754 2233322 2 344678888888888887433 346888
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
+++++...+.+.... ...+++++.+|++.+ |+++... ....|++++.+ +...+.
T Consensus 104 ~~~~g~~~~~~~~~~------------~~~P~~iavdp~~g~-ly~~d~~----------~~~~I~~~~~d---G~~~~~ 157 (316)
T 1ijq_A 104 ADTKGVKRKTLFREN------------GSKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGLN---GVDIYS 157 (316)
T ss_dssp EETTSSSEEEEEECT------------TCCEEEEEEETTTTE-EEEEECS----------SSCEEEEEETT---SCCEEE
T ss_pred EeCCCCceEEEEECC------------CCCcceEEeCCCCCE-EEEEccC----------CCCeEEEEcCC---CCCeEE
Confidence 999877555443211 123458899998887 7886411 12579998886 545544
Q ss_pred eEeece-eEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 294 LHKLDL-RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 294 l~~~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+..... ... ++|+++++.|+++. .....|+.+++++.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D---~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG 196 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC
T ss_pred EEECCCCCceEEEEeccCCEEEEEE---CCCCeEEEEecCCC
Confidence 433222 233 89999999998865 23458999999873
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-05 Score=84.73 Aligned_cols=185 Identities=12% Similarity=-0.017 Sum_probs=121.1
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|+.+++++++...+..... ....++|++.++.|+++...
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~~-----~~~~l~~d~~~~~lywsD~~--------------------------------- 132 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS--------------------------------- 132 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSCS-----CEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred cceeEEEccCCcceeEeccccC-----cceEEeeeeccCceEEEecC---------------------------------
Confidence 3789999998887666644332 25688999988899988321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-----CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
...|++++++| ..+.+.. . .....+++.+.++.|+++... ...|++
T Consensus 133 ---------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------------~~~I~~ 185 (400)
T 3p5b_L 133 ---------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 185 (400)
T ss_dssp ---------------TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ---------------CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------------CCeEEE
Confidence 14677787755 2333332 2 456678888878888887433 346889
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
++++++..+.+.... ...+++++..|.+.+ |+++.. .....|++++++ +...+.
T Consensus 186 ~~~~g~~~~~l~~~~------------~~~P~~iavdp~~g~-ly~td~----------~~~~~I~~~~~d---G~~~~~ 239 (400)
T 3p5b_L 186 ADTKGVKRKTLFREN------------GSKPRAIVVDPVHGF-MYWTDW----------GTPAKIKKGGLN---GVDIYS 239 (400)
T ss_dssp ECTTTCSEEEEEECS------------SCCEEEEEEETTTTE-EEEEEC----------SSSCCEEEEETT---SCSCEE
T ss_pred EeCCCCceEEEEeCC------------CCCcceEEEecccCe-EEEEeC----------CCCCEEEEEeCC---CCccEE
Confidence 999887655543211 123568899998887 888641 112579999886 555555
Q ss_pred eEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 294 LHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 294 l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
+.... ..-. ++++++++.|+++- .....|+.+++++. ..+.+.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD---~~~~~I~~~d~dG~--~~~~~~ 284 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG--NRKTIL 284 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--CCEEEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEE---CCCCEEEEEeCCCC--ccEEEE
Confidence 54433 2234 89999999988865 23468999999884 344444
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=93.67 Aligned_cols=103 Identities=14% Similarity=-0.015 Sum_probs=68.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|+||++||.+.... .. ... ........|.++||.|++ .+.+|+|.+. ....+..+++.++++.
T Consensus 7 ~~~vvlvHG~~~~~~-----~~----~~~-~~~~~~~~L~~~G~~v~~---~d~~g~g~s~---~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 7 KYPIVLAHGMLGFDN-----IL----GVD-YWFGIPSALRRDGAQVYV---TEVSQLDTSE---VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp SSCEEEECCTTCCSE-----ET----TEE-SSTTHHHHHHHTTCCEEE---ECCCSSSCHH---HHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCcc-----cc----ccc-cHHHHHHHHHhCCCEEEE---EeCCCCCCch---hhHHHHHHHHHHHHHH
Confidence 578999999631100 00 001 112456678889999999 4555665531 1233444444444443
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
+ +..++.++||||||.++..++.++|++++++|++++..
T Consensus 71 ~------~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 S------GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp H------CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h------CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 3 34689999999999999999999999999999999853
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-05 Score=78.09 Aligned_cols=224 Identities=8% Similarity=0.021 Sum_probs=133.4
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC----ceeeeeccCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG----KLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~~ 230 (751)
..|..+++++ +...+... .....++|+++++.|+++... ...|+++++++ ...+.+...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~------------~~~I~~~~~~g~~~~~~~~~~~~~--- 74 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISR--- 74 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECS---
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC------------CCcEEEEECCCCCCCcccEEEEeC---
Confidence 4688889855 44444333 667789999999999887443 34788999886 222322110
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spd 308 (751)
.-..+.++++++.+.. ||++.. ....|.+++++ +...+.+... ..... ++..|+
T Consensus 75 ---------~~~~p~glavd~~~~~-ly~~d~-----------~~~~I~~~~~~---g~~~~~~~~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 75 ---------DIQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADTK---GVKRKTLFRENGSKPRAIVVDPV 130 (316)
T ss_dssp ---------SCSCCCEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SSSEEEEEECTTCCEEEEEEETT
T ss_pred ---------CCCCcCEEEEeecCCe-EEEEEC-----------CCCEEEEEeCC---CCceEEEEECCCCCcceEEeCCC
Confidence 0112347899888777 788652 23578888875 5455555442 23344 788998
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..|+++... ....|+++++++. ..+.+....... ...++++++++.|++...
T Consensus 131 ~g~ly~~d~~--~~~~I~~~~~dG~--~~~~~~~~~~~~------P~gla~d~~~~~lY~~D~----------------- 183 (316)
T 1ijq_A 131 HGFMYWTDWG--TPAKIKKGGLNGV--DIYSLVTENIQW------PNGITLDLLSGRLYWVDS----------------- 183 (316)
T ss_dssp TTEEEEEECS--SSCEEEEEETTSC--CEEEEECSSCSC------EEEEEEETTTTEEEEEET-----------------
T ss_pred CCEEEEEccC--CCCeEEEEcCCCC--CeEEEEECCCCC------ceEEEEeccCCEEEEEEC-----------------
Confidence 8888876532 1258999999874 333343222211 111789999999988772
Q ss_pred CCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 389 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
....|.++|+++...+.+..... .+..+.+ +++ +++.|+++... ...|++++..+|+.
T Consensus 184 ---~~~~I~~~d~dg~~~~~~~~~~~--~~~~P~g-------iav--~~~~ly~~d~~---~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 184 ---KLHSISSIDVNGGNRKTILEDEK--RLAHPFS-------LAV--FEDKVFWTDII---NEAIFSANRLTGSD 241 (316)
T ss_dssp ---TTTEEEEEETTSCSCEEEEECTT--TTSSEEE-------EEE--ETTEEEEEETT---TTEEEEEETTTCCC
T ss_pred ---CCCeEEEEecCCCceEEEeecCC--ccCCcEE-------EEE--ECCEEEEEECC---CCeEEEEeCCCCcc
Confidence 23478999998655444433211 1111222 233 45677776532 45788888766553
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-08 Score=107.02 Aligned_cols=128 Identities=21% Similarity=0.192 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCCC-CCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhC-CeEEEEcCCCCCC-CCCC
Q 004475 494 LTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSIPII-GEGD 570 (751)
Q Consensus 494 i~~~~~~P~~~~~-~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~~~~~-g~g~ 570 (751)
+...+|.|..... ....++|+||++|||||..++. ..+.. ..|+++ |++|+.++|+-.. |+..
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~--------~~~~~------~~la~~~~~vvv~~~YRl~~~Gfl~ 177 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTG--------NLYDG------SVLASYGNVIVITVNYRLGVLGFLS 177 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCG--------GGSCC------HHHHHHHTCEEEEECCCCHHHHHCC
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCC--------CccCc------hhhhccCCEEEEEeCCcCcccccCc
Confidence 5677888865321 1123589999999998765432 11111 235554 7999998886322 2211
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCC
Q 004475 571 KLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGS 635 (751)
Q Consensus 571 ~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~~~ 635 (751)
...........+.|+..+++|++++. ..|+++|.|+|+|+||.++..++.... ..|.++|+.+|.
T Consensus 178 ~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 178 TGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 11111111345789999999998852 368999999999999999998887543 468999998864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-05 Score=78.94 Aligned_cols=236 Identities=7% Similarity=-0.033 Sum_probs=123.6
Q ss_pred eEEEEEcC-CCCceecCC-C--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc--eeeeeccCCCC
Q 004475 157 AQLVLGSL-DGTAKDFGT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~ 230 (751)
..|+++|. +|+...... . .....++++|||+ |+++... ...|++|+.++. ....+......
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~------------~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVA------------LHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETT------------TTEEEEECTTCSSCCSEEESBTTBC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECC------------CCEEEEEeCCCCeEEEEEecccCCC
Confidence 57999999 686543322 2 4567899999999 6665332 346889998876 33333211000
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-------e---e
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-------L---R 300 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-------~---~ 300 (751)
+. -...-..+..++++|++.. |+++.. .....|++++.+ +.....+.... . .
T Consensus 136 -g~---~~~~~~~P~~ia~~~~~g~-lyv~d~----------~~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~ 197 (329)
T 3fvz_A 136 -GS---DQNHFCQPTDVAVEPSTGA-VFVSDG----------YCNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSV 197 (329)
T ss_dssp -CC---STTCCSSEEEEEECTTTCC-EEEEEC----------SSCCEEEEECTT---SCEEEEECEECCSSSCCTTEESC
T ss_pred -CC---CccccCCCcEEEEeCCCCe-EEEEeC----------CCCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCC
Confidence 00 0011123568999994444 666541 012467777754 43333332111 1 1
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-cccccCCCCCCCeeeCCCCCEEEEeeeecCCcce
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 378 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~ 378 (751)
.. ++++|++..|+++. ....+|.+++.+++ .-...+.... ....+. ++++| |. + +... +.
T Consensus 198 p~gia~d~~~g~l~v~d---~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~------~~~~p-g~-~-~~~~-----g~ 259 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVAD---RENGRIQCFKTDTK-EFVREIKHASFGRNVFA------ISYIP-GF-L-FAVN-----GK 259 (329)
T ss_dssp EEEEEEETTTTEEEEEE---TTTTEEEEEETTTC-CEEEEECCTTTTTCEEE------EEEET-TE-E-EEEE-----CC
T ss_pred CcEEEEECCCCEEEEEE---CCCCEEEEEECCCC-cEEEEEeccccCCCcce------eeecC-CE-E-EEeC-----CC
Confidence 34 88999966666544 23457888888753 1112221111 111111 56777 42 2 2221 11
Q ss_pred EEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 379 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
..-.+.....+++|+..+|+....+..... . ...+..++++||| .|+++... ...|+++++
T Consensus 260 -------~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-~-------~~~p~~ia~~~dG-~lyvad~~---~~~I~~~~~ 320 (329)
T 3fvz_A 260 -------PYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-H-------FDMPHDIVASEDG-TVYIGDAH---TNTVWKFTL 320 (329)
T ss_dssp -------CCTTCSCCCCEEEEETTTCCEEEEECCSSS-C-------CSSEEEEEECTTS-EEEEEESS---SCCEEEEEE
T ss_pred -------EEeccCCCcEEEEEEcCCCeEEEEEcCCCC-c-------cCCeeEEEECCCC-CEEEEECC---CCEEEEEeC
Confidence 011122345789999988887665532111 1 1123346899999 56655433 336887776
Q ss_pred CC
Q 004475 459 PL 460 (751)
Q Consensus 459 ~~ 460 (751)
+.
T Consensus 321 ~~ 322 (329)
T 3fvz_A 321 TE 322 (329)
T ss_dssp EE
T ss_pred Cc
Confidence 54
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.8e-05 Score=75.40 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=108.7
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
......++|||+ |.+.. .....|++++.+ ++.+.+...... ..+..++++|||+ |++....
T Consensus 16 ~~~~i~~d~~g~-l~v~~---------~~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~-l~v~~~~---- 76 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQ---------HKANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGE-VWFTENA---- 76 (299)
T ss_dssp CEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSC-EEEEETT----
T ss_pred CccceEECCCCC-EEEEe---------cCCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCC-EEEeCCC----
Confidence 467888999997 33321 334689999987 665554321111 1356788999997 4444210
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC--C-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~--~-~~~~~~~~SpDG~~ 188 (751)
...|++++.+|+.+.+.. . .....++++|||+
T Consensus 77 --------------------------------------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 77 --------------------------------------------ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp --------------------------------------------TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSC-
T ss_pred --------------------------------------------CCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCC-
Confidence 036788887765444431 2 4567889999996
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.... ...+++++.++ +...+.. +. ....+..++++|||+ ++++..
T Consensus 112 l~v~~~~------------~~~i~~~d~~g-~~~~~~~-~~----------~~~~~~~i~~~~~g~--l~v~~~------ 159 (299)
T 2z2n_A 112 IWFTEMN------------GNRIGRITDDG-KIREYEL-PN----------KGSYPSFITLGSDNA--LWFTEN------ 159 (299)
T ss_dssp EEEEETT------------TTEEEEECTTC-CEEEEEC-SS----------TTCCEEEEEECTTSC--EEEEET------
T ss_pred EEEEecC------------CceEEEECCCC-CEEEecC-CC----------CCCCCceEEEcCCCC--EEEEeC------
Confidence 5554322 23588888843 3333211 10 112345789999985 555431
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
..+.|++++.+ + ....+. ....... +.++++|+ |+++.. ....|++++.
T Consensus 160 -----~~~~i~~~~~~---g-~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~---~~~~i~~~~~ 211 (299)
T 2z2n_A 160 -----QNNAIGRITES---G-DITEFKIPTPASGPVGITKGNDDA-LWFVEI---IGNKIGRITT 211 (299)
T ss_dssp -----TTTEEEEECTT---C-CEEEEECSSTTCCEEEEEECTTSS-EEEEET---TTTEEEEECT
T ss_pred -----CCCEEEEEcCC---C-cEEEeeCCCCCCcceeEEECCCCC-EEEEcc---CCceEEEECC
Confidence 12467877762 2 222221 1122344 78899988 444331 2347888988
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=95.25 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred hHHHHHHhCCeE---EEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 004475 545 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 619 (751)
Q Consensus 545 ~~~~~~~~~G~~---v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a 619 (751)
.+...|.++||. |+++ ++.|+|.+... ........+++.+.++.+.+.. ..++|.|+||||||.++..++
T Consensus 72 ~l~~~L~~~Gy~~~~V~~~---D~~g~G~S~~~~~~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a 146 (342)
T 2x5x_A 72 SVYAELKARGYNDCEIFGV---TYLSSSEQGSAQYNYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATL 146 (342)
T ss_dssp CHHHHHHHTTCCTTSEEEE---CCSCHHHHTCGGGCCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEE---eCCCCCccCCccccCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHH
Confidence 456778889998 8884 44455443211 1112345677777777776653 236899999999999999999
Q ss_pred HhC--CCceeEEEEccCCCC
Q 004475 620 AHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 620 ~~~--p~~~~~~v~~~~~~d 637 (751)
.++ |++++++|++++...
T Consensus 147 ~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 147 QYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHTCGGGEEEEEEESCCTT
T ss_pred HHcCchhhhcEEEEECCCcc
Confidence 988 899999999987643
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-08 Score=100.56 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCCeEEEEcCCCCCCCCCCCCCCc--hhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~ 588 (751)
.|+||++||.+. +....|.......| ...+|.|++ .|.+|+|.+.... .......+++.++
T Consensus 69 ~p~vvliHG~~~-------------s~~~~w~~~l~~~ll~~~~~~VI~---vD~~g~g~s~y~~~~~~~~~v~~~la~l 132 (449)
T 1hpl_A 69 RKTRFIIHGFID-------------KGEESWLSTMCQNMFKVESVNCIC---VDWKSGSRTAYSQASQNVRIVGAEVAYL 132 (449)
T ss_dssp SEEEEEECCCCC-------------TTCTTHHHHHHHHHHHHCCEEEEE---EECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCC-------------CCCccHHHHHHHHHHhcCCeEEEE---EeCCcccCCccHHHHHHHHHHHHHHHHH
Confidence 689999999531 11111221233344 357999999 5556666543111 1123445778888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++|.+...++.+++.|+||||||++|+.++.++|++++.++++.|.
T Consensus 133 l~~L~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 133 VGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 88886543356689999999999999999999999999999988775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-05 Score=77.57 Aligned_cols=234 Identities=10% Similarity=0.080 Sum_probs=123.6
Q ss_pred eEEEEEcC-CCCceecCC-----C-ceEEeeeeCCC-CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccC
Q 004475 157 AQLVLGSL-DGTAKDFGT-----P-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDL 227 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~-----~-~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~ 227 (751)
..|++++. +|+.+.+.. . ..+..+++++| |+ |++.... ..|++++.+ ++.+.+ ...
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~-------------~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMR-------------LGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETT-------------TEEEEEETT-SCEEECCSBC
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECC-------------CCEEEEeCC-CCEEEEEecc
Confidence 47888997 776665543 2 45678899999 65 5554321 258899988 555544 221
Q ss_pred CCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC----CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-
Q 004475 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG----DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS- 302 (751)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~- 302 (751)
... .....+..++++|||+ ++++...+.. .........+.|++++.+ + ....+........
T Consensus 111 ~~~--------~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g-~~~~~~~~~~~~~~ 176 (314)
T 1pjx_A 111 SEG--------RRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---G-QMIQVDTAFQFPNG 176 (314)
T ss_dssp TTS--------CBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---S-CEEEEEEEESSEEE
T ss_pred CCC--------ccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECCC---C-CEEEeccCCCCcce
Confidence 100 0112356899999996 5554422100 000001112478888763 2 3333333222334
Q ss_pred EEEe----cCCceEEEeeeecccceeEEEecCC-CCCCcce-eeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCc
Q 004475 303 VSWC----DDSLALVNETWYKTSQTRTWLVCPG-SKDVAPR-VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE 376 (751)
Q Consensus 303 ~~~s----pdg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 376 (751)
+.|+ |||+.|+++.. ....|++++.+ ++..... .+....... .. ....+++++||+.++...
T Consensus 177 i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~--~p~~i~~d~~G~l~v~~~------ 244 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTH-EG--GADGMDFDEDNNLLVANW------ 244 (314)
T ss_dssp EEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCS-SC--EEEEEEEBTTCCEEEEEE------
T ss_pred EEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCC-CC--CCCceEECCCCCEEEEEc------
Confidence 7899 99987776542 23467777765 2200001 111111000 00 000167888886433322
Q ss_pred ceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEE
Q 004475 377 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 456 (751)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~ 456 (751)
....|.+||.++++......... .....+++++||+.|++.... ...|+++
T Consensus 245 ---------------~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~i~~~~dg~~l~v~~~~---~~~l~~~ 295 (314)
T 1pjx_A 245 ---------------GSSHIEVFGPDGGQPKMRIRCPF-----------EKPSNLHFKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp ---------------TTTEEEEECTTCBSCSEEEECSS-----------SCEEEEEECTTSSEEEEEETT---TTEEEEE
T ss_pred ---------------CCCEEEEEcCCCCcEeEEEeCCC-----------CCceeEEECCCCCEEEEEeCC---CCeEEEE
Confidence 12368888988666543332221 112235789999877766522 3579999
Q ss_pred EcCC
Q 004475 457 SWPL 460 (751)
Q Consensus 457 ~~~~ 460 (751)
++..
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-05 Score=80.35 Aligned_cols=225 Identities=8% Similarity=0.016 Sum_probs=137.3
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce----eeeeccCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~ 230 (751)
..|..+++++ ....+... .....++|++++..|+++... ...|+++++++.. ...+...
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~------------~~~I~~~~~~g~~~~~~~~~~~~~--- 156 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISR--- 156 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEEC------CCCEEEECS---
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC------------CCeEEEEEcccCCCCCcceEEEeC---
Confidence 5789999966 44555444 677899999999999887433 3468888887632 2222111
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spd 308 (751)
....+.++++.+.++. ||++.. ....|.+++++ +...+.+.... .... ++..|.
T Consensus 157 ---------~~~~p~glavD~~~~~-lY~~d~-----------~~~~I~~~~~~---g~~~~~l~~~~~~~P~~iavdp~ 212 (400)
T 3p5b_L 157 ---------DIQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADTK---GVKRKTLFRENGSKPRAIVVDPV 212 (400)
T ss_dssp ---------SCSCEEEEEEETTTTE-EEEEET-----------TTTEEEEECTT---TCSEEEEEECSSCCEEEEEEETT
T ss_pred ---------CCCCcccEEEEecCCc-eEEEEC-----------CCCeEEEEeCC---CCceEEEEeCCCCCcceEEEecc
Confidence 1122447888887777 888652 23578888886 55555555432 2234 788998
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..|+++.... ...|+++++++. ..+.+.......-. .++++++++.|++..
T Consensus 213 ~g~ly~td~~~--~~~I~~~~~dG~--~~~~~~~~~l~~P~------glavd~~~~~lY~aD------------------ 264 (400)
T 3p5b_L 213 HGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPN------GITLDLLSGRLYWVD------------------ 264 (400)
T ss_dssp TTEEEEEECSS--SCCEEEEETTSC--SCEEEECSSCSCEE------EEEEETTTTEEEEEE------------------
T ss_pred cCeEEEEeCCC--CCEEEEEeCCCC--ccEEEEECCCCceE------EEEEEeCCCEEEEEE------------------
Confidence 88888765322 357999999884 34444433221111 178999999998876
Q ss_pred CCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 389 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
.....|+++|++++..+.+..... .+.++ ..++.+++.|+++.+. ...|++++..+|+..
T Consensus 265 --~~~~~I~~~d~dG~~~~~~~~~~~--~l~~P---------~gl~v~~~~lywtd~~---~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 265 --SKLHSISSIDVNGGNRKTILEDEK--RLAHP---------FSLAVFEDKVFWTDII---NEAIFSANRLTGSDV 324 (400)
T ss_dssp --TTTTEEEEEETTSCCCEEEEECSS--TTSSE---------EEEEEETTEEEEEESS---SCSEEEEESSSCCCC
T ss_pred --CCCCEEEEEeCCCCccEEEEeCCC--CCCCC---------EEEEEeCCEEEEecCC---CCeEEEEEcCCCCce
Confidence 234579999998665555543321 11112 2333466778877633 345888886665433
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-08 Score=100.56 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=71.9
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~ 588 (751)
.|+||++||.+ + +....|.......+++ .+|.|+++ |.+|.|.+... ........+++.++
T Consensus 70 ~p~vvliHG~~-----------~--s~~~~w~~~l~~~ll~~~~~~VI~v---D~~g~g~s~y~~~~~~~~~~a~~l~~l 133 (450)
T 1rp1_A 70 KKTRFIIHGFI-----------D--KGEENWLLDMCKNMFKVEEVNCICV---DWKKGSQTSYTQAANNVRVVGAQVAQM 133 (450)
T ss_dssp SEEEEEECCCC-----------C--TTCTTHHHHHHHHHTTTCCEEEEEE---ECHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEccCC-----------C--CCCcchHHHHHHHHHhcCCeEEEEE---eCccccCCcchHHHHHHHHHHHHHHHH
Confidence 68999999953 1 1111121123334554 48999994 45555543211 11233456778888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++|.++..++.+++.|+||||||++|+.++.+.|+ +..++++.|.
T Consensus 134 l~~L~~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 134 LSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred HHHHHHhcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 888864433566799999999999999999999998 9999988775
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=83.28 Aligned_cols=252 Identities=13% Similarity=0.062 Sum_probs=121.4
Q ss_pred ceeEEeecCCCCCCCCcccccCCC-C------c-ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYP-D------G-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP 76 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~-~------~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~ 76 (751)
..|+++|+.+|- ++.+.+..+. . + ........+||| +|++.-+. ..+.+.+.|.++|.++++.+.
T Consensus 106 ~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~--~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 106 SRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGN--EEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp CCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEE--TTSCSCCEEEEECTTTCCEEE
T ss_pred CeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCC--cCCCCCCeEEEEECCCCeEEE
Confidence 469999997611 2222222110 0 1 122334689999 34443211 123556899999999887443
Q ss_pred -ccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhhe
Q 004475 77 -LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT 155 (751)
Q Consensus 77 -lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (751)
+..+... ...-..+.|+||++.++.+........ ..+.. .. .... ..
T Consensus 179 ~~~~~~~~--~~~~Yd~~~~p~~~~mvsS~wg~p~~~---------------~~g~~------------~~--~~~~-~~ 226 (462)
T 2ece_A 179 KWEIDRGD--QYLAYDFWWNLPNEVLVSSEWAVPNTI---------------EDGLK------------LE--HLKD-RY 226 (462)
T ss_dssp ECCSBCTT--CCCCCCEEEETTTTEEEECBCCCHHHH---------------TTCCC------------TT--THHH-HS
T ss_pred EEccCCCC--ccccceEEECCCCCEEEEccCcCcccc---------------ccccc------------hh--hhhh-cc
Confidence 3222111 001125789999996655421100000 00000 00 0000 12
Q ss_pred eeEEEEEcC-CCC-ceecCCC---ceEEe--eeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc--
Q 004475 156 TAQLVLGSL-DGT-AKDFGTP---AVYTA--VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-- 226 (751)
Q Consensus 156 ~~~l~~~~~-~G~-~~~lt~~---~~~~~--~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-- 226 (751)
...|.++|+ +++ .+.+.-+ ..... ++++|||+++++...... ....+.++++..+.++...+..
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-------~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-------KDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-------TTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-------cCCCceEEEEEecCCceeEEEEEe
Confidence 368899998 553 2333221 22333 456999999988765110 0013455554444333221111
Q ss_pred CC---CCCCCC---CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--c
Q 004475 227 LP---PAEDIP---VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--D 298 (751)
Q Consensus 227 ~~---~~~~~~---~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~ 298 (751)
.+ .....| ..+.........+.+||||++ ||++. +..+.|.++++.+ .+..+.+... .
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf-LYVSn-----------rg~d~VavfdV~d--~~~~~lv~~I~tG 365 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF-LYLSL-----------WGIGEVRQYDISN--PFKPVLTGKVKLG 365 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE-EEEEE-----------TTTTEEEEEECSS--TTSCEEEEEEECB
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCE-EEEEe-----------CCCCEEEEEEecC--CCCcEEEEEEEeC
Confidence 11 010111 111111233568999999998 66643 2335777777631 2233333221 1
Q ss_pred e---------------eEE-EEEecCCceEEEee
Q 004475 299 L---------------RFS-VSWCDDSLALVNET 316 (751)
Q Consensus 299 ~---------------~~~-~~~spdg~~l~~~~ 316 (751)
+ .-. +.+||||++|+.+.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1 124 89999999987765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-05 Score=79.77 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=116.9
Q ss_pred CceeEEEEEcCCCC--eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchh
Q 004475 60 CKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (751)
Q Consensus 60 ~~~~l~i~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (751)
....|.+++++++. ...+..... ....+.|.+.++.|+++-..
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~-----~~~~ld~d~~~~~lyw~D~~------------------------------ 55 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLE-----DAAAVDFVFSHGLIYWSDVS------------------------------ 55 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEE-----EEEEEEEEGGGTEEEEEETT------------------------------
T ss_pred ccCeEEEEECCCCceEEEEEecCCC-----ccEEEEEEeCCCEEEEEECC------------------------------
Confidence 34789999998763 222211111 23477899988889988221
Q ss_pred hhhccCCccchhhhhhheeeEEEEEcCCCCc--e-ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 138 TDNLLKDEYDESLFDYYTTAQLVLGSLDGTA--K-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~--~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
...|++++++|.. + .+... .....+++.+.+..|+++... ...|++
T Consensus 56 ------------------~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~------------~~~I~~ 105 (318)
T 3sov_A 56 ------------------EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEV 105 (318)
T ss_dssp ------------------TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ------------------CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC------------CCEEEE
Confidence 1478888886631 2 22222 344568888888888887433 346889
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
+++++...+.+... ....+++++..|.+.. |+++.. .....|++++++ +...+.
T Consensus 106 ~~~dG~~~~~l~~~------------~~~~P~giavdp~~g~-ly~td~----------~~~~~I~r~~~d---G~~~~~ 159 (318)
T 3sov_A 106 SNLDGSLRKVLFWQ------------ELDQPRAIALDPSSGF-MYWTDW----------GEVPKIERAGMD---GSSRFI 159 (318)
T ss_dssp EETTSCSCEEEECS------------SCSSEEEEEEEGGGTE-EEEEEC----------SSSCEEEEEETT---SCSCEE
T ss_pred EECCCCcEEEEEeC------------CCCCccEEEEeCCCCE-EEEEec----------CCCCEEEEEEcC---CCCeEE
Confidence 99988755544221 1123458899998877 788641 123579999886 555555
Q ss_pred eEeece-eEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 294 LHKLDL-RFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 294 l~~~~~-~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
+..... .-. ++|+|+++.|+++- .....|+++++++. ..+.+.
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD---~~~~~I~~~d~dG~--~~~~~~ 204 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWAD---AKLNFIHKSNLDGT--NRQAVV 204 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEE---CCCCEEEEEcCCCC--ceEEEe
Confidence 543322 223 89999999998865 33468999999873 334444
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-05 Score=77.45 Aligned_cols=223 Identities=7% Similarity=-0.023 Sum_probs=135.6
Q ss_pred eEEEEEcCCCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCC
Q 004475 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 231 (751)
..|..+++++. ...+... .....+.|.+.+..|+++... ...|++++++++.. +.+....
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------------~~~I~r~~~~g~~~~~~~~~~~--- 77 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------------EEAIKRTEFNKTESVQNVVVSG--- 77 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------------TTEEEEEETTSSSCCCEEEEEC---
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------------CCcEEEEEccCCCceEEEEcCC---
Confidence 58899999663 2222222 456688999988889887433 34688999887632 1111100
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCC
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDS 309 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg 309 (751)
-..+.++++.+.+.. ||++.. ....|.+++++ +...+.+... ..... +++.|.+
T Consensus 78 ---------l~~p~glavd~~~g~-ly~~d~-----------~~~~I~~~~~d---G~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 78 ---------LLSPDGLACDWLGEK-LYWTDS-----------ETNRIEVSNLD---GSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp ---------CSCCCEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SCSCEEEECSSCSSEEEEEEEGGG
T ss_pred ---------CCCccEEEEEcCCCe-EEEEEC-----------CCCEEEEEECC---CCcEEEEEeCCCCCccEEEEeCCC
Confidence 012347889887777 788652 23578888886 5555555432 22334 7889988
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTP 389 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (751)
..|+++... ....|+++++++. ..+.+....... +..++++|+++.|++..
T Consensus 134 g~ly~td~~--~~~~I~r~~~dG~--~~~~~~~~~l~~------Pnglavd~~~~~lY~aD------------------- 184 (318)
T 3sov_A 134 GFMYWTDWG--EVPKIERAGMDGS--SRFIIINSEIYW------PNGLTLDYEEQKLYWAD------------------- 184 (318)
T ss_dssp TEEEEEECS--SSCEEEEEETTSC--SCEEEECSSCSC------EEEEEEETTTTEEEEEE-------------------
T ss_pred CEEEEEecC--CCCEEEEEEcCCC--CeEEEEECCCCC------ccEEEEeccCCEEEEEE-------------------
Confidence 888776532 2358999999874 334443322211 11188999999998877
Q ss_pred CCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 390 EGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 390 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
.....|+++|++++..+.+..... ..+.+ +++ +++.++++.+ ....|++++..+|+..
T Consensus 185 -~~~~~I~~~d~dG~~~~~~~~~~~----~~P~g-------lav--~~~~lywtd~---~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 185 -AKLNFIHKSNLDGTNRQAVVKGSL----PHPFA-------LTL--FEDILYWTDW---STHSILACNKYTGEGL 242 (318)
T ss_dssp -TTTTEEEEEETTSCSCEEEECSCC----SCEEE-------EEE--ETTEEEEEET---TTTEEEEEETTTCCSC
T ss_pred -CCCCEEEEEcCCCCceEEEecCCC----CCceE-------EEE--eCCEEEEEec---CCCeEEEEECCCCCce
Confidence 234579999997655544433111 11222 233 5667887743 3567999998776543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0003 Score=77.76 Aligned_cols=121 Identities=2% Similarity=-0.119 Sum_probs=74.3
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
+.|.+.+..|+++.. ....|+++++++. ..+.+......... -+++...+..|++..
T Consensus 354 ld~d~~~~~ly~sD~---~~~~I~r~~~~g~--~~~~v~~~~~~~p~------GlAvD~~~~~lY~tD------------ 410 (619)
T 3s94_A 354 IDYDPVEGYIYWTDD---EVRAIRRSFIDGS--GSQFVVTAQIAHPD------GIAVDWVARNLYWTD------------ 410 (619)
T ss_dssp EEEETTTTEEEEEET---TTTEEEEEETTSC--SCEEEECSSCSCCC------EEEEETTTTEEEEEE------------
T ss_pred EEEEcCCCeEEEEeC---CCCeEEEEEcCCC--ccEEEEECCCCCcC------ceEEecccCcEEEEe------------
Confidence 778887777877652 3457999998874 33344332211111 166776667777765
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCc
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 462 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~ 462 (751)
.....|.+.++++...+.+.... ...+..+++.|..+.|+|+.+.. .+.|+++++++..
T Consensus 411 --------~~~~~I~v~~~~G~~~~~l~~~~-----------l~~P~~iavdp~~G~ly~tD~g~--~~~I~r~~~dG~~ 469 (619)
T 3s94_A 411 --------TGTDRIEVTRLNGTMRKILISED-----------LEEPRAIVLDPMVGYMYWTDWGE--IPKIERAALDGSD 469 (619)
T ss_dssp --------TTTTEEEEEETTSCSCEEEECTT-----------CCSEEEEEEETTTTEEEEEECSS--SCEEEEEETTSCS
T ss_pred --------CCCCcEEEEeCCCCeEEEEEECC-----------CCCeeeEEEEcCCCcEEEecCCC--CCEEEEEccCCCc
Confidence 12347888888765444443221 11233468888878899887543 5789999988755
Q ss_pred eeEee
Q 004475 463 SSQIT 467 (751)
Q Consensus 463 ~~~lt 467 (751)
.+.+.
T Consensus 470 ~~~l~ 474 (619)
T 3s94_A 470 RVVLV 474 (619)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 55554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-05 Score=79.89 Aligned_cols=238 Identities=10% Similarity=0.077 Sum_probs=131.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCC----CcccccceeecCC-CCeEEEEEeecccccccCCceeEEEEEcCCCCeeec-c
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-F 78 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~----~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l-t 78 (751)
..|+++++.+ |+.+.+.. + .........++|| |+ |.++. ....|++++.+ |+.+.+ .
T Consensus 46 ~~i~~~d~~~----g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~-l~v~~----------~~~~l~~~d~~-g~~~~~~~ 108 (314)
T 1pjx_A 46 GEILRIDLKT----GKKTVICK-PEVNGYGGIPAGCQCDRDANQ-LFVAD----------MRLGLLVVQTD-GTFEEIAK 108 (314)
T ss_dssp CEEEEECTTT----CCEEEEEC-CEETTEECCEEEEEECSSSSE-EEEEE----------TTTEEEEEETT-SCEEECCS
T ss_pred CEEEEEeCCC----CcEEEEEe-cccCCCCCCCceEEEecCCCc-EEEEE----------CCCCEEEEeCC-CCEEEEEe
Confidence 3588888877 88776642 1 1124567889999 64 43331 12379999998 777666 4
Q ss_pred CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
..........+..++++|||+ |+++........ . .. .... ......
T Consensus 109 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~-~--~~------~~~~------------------------~~~~~~ 154 (314)
T 1pjx_A 109 KDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAP-A--DY------TRSM------------------------QEKFGS 154 (314)
T ss_dssp BCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTT-S--CC------CBTT------------------------SSSCEE
T ss_pred ccCCCccccCCcCEEECCCCC-EEEEecCccccc-c--cc------cccc------------------------cCCCCe
Confidence 322110011256789999996 455432110000 0 00 0000 002257
Q ss_pred EEEEcCCCCceecCCC-ceEEeeeeC----CCCceEEEEEecCCcccccccCCCceeEEEEeCC-Cceee---eeccCCC
Q 004475 159 LVLGSLDGTAKDFGTP-AVYTAVEPS----PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVR---ELCDLPP 229 (751)
Q Consensus 159 l~~~~~~G~~~~lt~~-~~~~~~~~S----pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~---~l~~~~~ 229 (751)
|+.++.+|+.+.+... .....++|+ |||+.|++.... ...|++++.+ .+... .+...+.
T Consensus 155 l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 155 IYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp EEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred EEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECCCCCccccceEEEECCC
Confidence 8999887765554333 445678999 999988876432 2468888865 33221 1111111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecC
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.. ...+..+++++||+ ++++.. ..+.|++++.+ ++.....+........ +.++||
T Consensus 223 ~~---------~~~p~~i~~d~~G~--l~v~~~-----------~~~~i~~~d~~--~g~~~~~~~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 223 TH---------EGGADGMDFDEDNN--LLVANW-----------GSSHIEVFGPD--GGQPKMRIRCPFEKPSNLHFKPQ 278 (314)
T ss_dssp CS---------SCEEEEEEEBTTCC--EEEEEE-----------TTTEEEEECTT--CBSCSEEEECSSSCEEEEEECTT
T ss_pred CC---------CCCCCceEECCCCC--EEEEEc-----------CCCEEEEEcCC--CCcEeEEEeCCCCCceeEEECCC
Confidence 10 01245789999996 444321 12468888764 1222333332223445 788999
Q ss_pred CceEEEeeeecccceeEEEecCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|+.|+++... ...|++++++.
T Consensus 279 g~~l~v~~~~---~~~l~~~~~~~ 299 (314)
T 1pjx_A 279 TKTIFVTEHE---NNAVWKFEWQR 299 (314)
T ss_dssp SSEEEEEETT---TTEEEEEECSS
T ss_pred CCEEEEEeCC---CCeEEEEeCCC
Confidence 9988776522 24688888765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-05 Score=83.23 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=129.9
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
-++++||++|+... ..+.|.++++.+++......+... .+..++| |++.|+..+.+
T Consensus 137 ~~~~~d~~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~--~~~~l~sg~~d-------- 192 (435)
T 1p22_A 137 YCLQYDDQKIVSGL----------RDNTIKIWDKNTLECKRILTGHTG----SVLCLQY--DERVIITGSSD-------- 192 (435)
T ss_dssp EEEECCSSEEEEEE----------SSSCEEEEESSSCCEEEEECCCSS----CEEEEEC--CSSEEEEEETT--------
T ss_pred EEEEECCCEEEEEe----------CCCeEEEEeCCCCeEEEEEcCCCC----cEEEEEE--CCCEEEEEcCC--------
Confidence 36778999998863 346788889888876554433221 3556666 88888877442
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCceEEEE
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLIT 192 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~ 192 (751)
+.|.++|+ +|+ ...+..+ ..+..+.|++ ..|+..
T Consensus 193 -----------------------------------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~ 229 (435)
T 1p22_A 193 -----------------------------------------STVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTC 229 (435)
T ss_dssp -----------------------------------------SCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEE
T ss_pred -----------------------------------------CeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEe
Confidence 46777888 663 3444444 6788888874 355554
Q ss_pred EecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcccc
Q 004475 193 SMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEV 272 (751)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~ 272 (751)
+. ...+.+||+.++....+... +......+..+.| +|+. ++..+
T Consensus 230 s~-------------dg~i~vwd~~~~~~~~~~~~---------~~~~~~~v~~~~~--~~~~-l~s~~----------- 273 (435)
T 1p22_A 230 SK-------------DRSIAVWDMASPTDITLRRV---------LVGHRAAVNVVDF--DDKY-IVSAS----------- 273 (435)
T ss_dssp ET-------------TSCEEEEECSSSSCCEEEEE---------ECCCSSCEEEEEE--ETTE-EEEEE-----------
T ss_pred eC-------------CCcEEEEeCCCCCCceeeeE---------ecCCCCcEEEEEe--CCCE-EEEEe-----------
Confidence 33 24688999976543211000 0111122345566 7776 55543
Q ss_pred CcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCC
Q 004475 273 SPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSD 351 (751)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (751)
..+.|.++++.. +.....+......+. +.| +++.|+.+.. ...|.+.++.++ ............+
T Consensus 274 -~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~--~~~~~~~~h~~~v--- 339 (435)
T 1p22_A 274 -GDRTIKVWNTST--CEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECG--ACLRVLEGHEELV--- 339 (435)
T ss_dssp -TTSEEEEEETTT--CCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTC--CEEEEECCCSSCE---
T ss_pred -CCCeEEEEECCc--CcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCC--CEEEEEeCCcCcE---
Confidence 235788888851 223333444444555 666 5677766552 245777777764 2222222222222
Q ss_pred CCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCc
Q 004475 352 PGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 405 (751)
Q Consensus 352 ~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 405 (751)
.+.+.||+.|+..+.+ ..|.+||+.+++
T Consensus 340 -----~~~~~~~~~l~sg~~d---------------------g~i~vwd~~~~~ 367 (435)
T 1p22_A 340 -----RCIRFDNKRIVSGAYD---------------------GKIKVWDLVAAL 367 (435)
T ss_dssp -----EEEECCSSEEEEEETT---------------------SCEEEEEHHHHT
T ss_pred -----EEEEecCCEEEEEeCC---------------------CcEEEEECCCCC
Confidence 2233488888877732 268888886543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-05 Score=85.11 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=113.5
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+||+.+ ++...... .....+...+| ||+.|+... ..+.|.++++.+++..........
T Consensus 152 dg~i~iwd~~~----~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~ 214 (435)
T 1p22_A 152 DNTIKIWDKNT----LECKRILT-GHTGSVLCLQY--DERVIITGS----------SDSTVRVWDVNTGEMLNTLIHHCE 214 (435)
T ss_dssp SSCEEEEESSS----CCEEEEEC-CCSSCEEEEEC--CSSEEEEEE----------TTSCEEEEESSSCCEEEEECCCCS
T ss_pred CCeEEEEeCCC----CeEEEEEc-CCCCcEEEEEE--CCCEEEEEc----------CCCeEEEEECCCCcEEEEEcCCCC
Confidence 34789999988 77665431 12224555555 888887753 346788889888875443332221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+..+.|++ +.|+..+.+ ..|.++|
T Consensus 215 ----~v~~l~~~~--~~l~s~s~d-------------------------------------------------g~i~vwd 239 (435)
T 1p22_A 215 ----AVLHLRFNN--GMMVTCSKD-------------------------------------------------RSIAVWD 239 (435)
T ss_dssp ----CEEEEECCT--TEEEEEETT-------------------------------------------------SCEEEEE
T ss_pred ----cEEEEEEcC--CEEEEeeCC-------------------------------------------------CcEEEEe
Confidence 366778864 466665432 3567777
Q ss_pred C-CCCc----eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCc
Q 004475 164 L-DGTA----KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVC 236 (751)
Q Consensus 164 ~-~G~~----~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 236 (751)
+ +++. ..+..+ ..+..+.| ||++|+....+ ..+.+||+.+++.. .+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~--------- 295 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD-------------RTIKVWNTSTCEFVRTLNGH--------- 295 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT-------------SEEEEEETTTCCEEEEEECC---------
T ss_pred CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC-------------CeEEEEECCcCcEEEEEcCC---------
Confidence 7 4432 233333 56777777 88888776543 36889999876543 22211
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
...+..+.| +++. ++... ..+.|.++++.. +.....+......+. +.| |++.|+.+
T Consensus 296 ----~~~v~~~~~--~~~~-l~~g~------------~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 296 ----KRGIACLQY--RDRL-VVSGS------------SDNTIRLWDIEC--GACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp ----SSCEEEEEE--ETTE-EEEEE------------TTSCEEEEETTT--CCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred ----CCcEEEEEe--CCCE-EEEEe------------CCCeEEEEECCC--CCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 122345566 4555 44433 235788888751 223333444444555 666 88887776
Q ss_pred e
Q 004475 316 T 316 (751)
Q Consensus 316 ~ 316 (751)
+
T Consensus 353 ~ 353 (435)
T 1p22_A 353 A 353 (435)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-05 Score=75.45 Aligned_cols=227 Identities=12% Similarity=0.071 Sum_probs=122.7
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-ccccceeeeeEEe-cCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-ICLNAVFGSFVWV-NNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~-~~~~~~~~~~~ws-pDg~~l~~~~~~~~~ 110 (751)
....+++|||+ |+++. .....|++++.++...+.+..... .........++++ ++|+ |++....
T Consensus 32 p~~v~~~~~g~-l~v~~---------~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~--- 97 (286)
T 1q7f_A 32 PSGVAVNAQND-IIVAD---------TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS--- 97 (286)
T ss_dssp EEEEEECTTCC-EEEEE---------GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG---
T ss_pred CceEEECCCCC-EEEEE---------CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCC---
Confidence 56678999996 43332 234678899987544444422110 0000124567885 5664 5554210
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc-eecCCC--ceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA-KDFGTP--AVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~-~~lt~~--~~~~~~~~SpDG~ 187 (751)
....|++++.+|+. +.+... .....++++|||+
T Consensus 98 --------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 133 (286)
T 1q7f_A 98 --------------------------------------------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR 133 (286)
T ss_dssp --------------------------------------------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC
T ss_pred --------------------------------------------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC
Confidence 01468888887743 334322 4567899999997
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|++.... ...|++|+.++.....+.... ....++.++++|||+ ++++..
T Consensus 134 -l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~-----------~~~~p~~i~~~~~g~--l~v~~~----- 182 (286)
T 1q7f_A 134 -IIVVECK------------VMRVIIFDQNGNVLHKFGCSK-----------HLEFPNGVVVNDKQE--IFISDN----- 182 (286)
T ss_dssp -EEEEETT------------TTEEEEECTTSCEEEEEECTT-----------TCSSEEEEEECSSSE--EEEEEG-----
T ss_pred -EEEEECC------------CCEEEEEcCCCCEEEEeCCCC-----------ccCCcEEEEECCCCC--EEEEEC-----
Confidence 5555322 346889998776554442110 012345899999987 455431
Q ss_pred CccccCcccceeeccCCCCCCCCceEeEeec--eeEE-EEEecCCceEEEeeeecccce-eEEEecCCCCCCcceeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFS-VSWCDDSLALVNETWYKTSQT-RTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~-~~~spdg~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~ 343 (751)
....|++++.+ +.....+.... .... +++++||+. +++.. ... .|.+++.++. ....+...
T Consensus 183 ------~~~~i~~~~~~---g~~~~~~~~~g~~~~p~~i~~d~~G~l-~v~~~---~~~~~i~~~~~~g~--~~~~~~~~ 247 (286)
T 1q7f_A 183 ------RAHCVKVFNYE---GQYLRQIGGEGITNYPIGVGINSNGEI-LIADN---HNNFNLTIFTQDGQ--LISALESK 247 (286)
T ss_dssp ------GGTEEEEEETT---CCEEEEESCTTTSCSEEEEEECTTCCE-EEEEC---SSSCEEEEECTTSC--EEEEEEES
T ss_pred ------CCCEEEEEcCC---CCEEEEEccCCccCCCcEEEECCCCCE-EEEeC---CCCEEEEEECCCCC--EEEEEccc
Confidence 23578888864 33223332211 2344 889999974 33331 222 7888887652 22222221
Q ss_pred cc-ccccCCCCCCCeeeCCCCCEEEEee
Q 004475 344 VF-ENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 344 ~~-~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
.. .... .++++|||+ |++..
T Consensus 248 ~~~~~~~------~i~~~~~g~-l~vs~ 268 (286)
T 1q7f_A 248 VKHAQCF------DVALMDDGS-VVLAS 268 (286)
T ss_dssp SCCSCEE------EEEEETTTE-EEEEE
T ss_pred CCCCcce------eEEECCCCc-EEEEC
Confidence 11 1111 177899996 44444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=96.46 Aligned_cols=180 Identities=12% Similarity=-0.018 Sum_probs=111.4
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
....|+++++++++...+..... ....++|+++++.|+++-..
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~-----~p~gla~d~~~~~Ly~sD~~-------------------------------- 426 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS-------------------------------- 426 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCT-----TCCCCEEETTTTEEEECCTT--------------------------------
T ss_pred CccceEEEeCCCCcceeeeccCc-----ceEEEccccccCeEEEEecC--------------------------------
Confidence 33678889988877766643332 24578999998889887221
Q ss_pred hccCCccchhhhhhheeeEEEEEcCCC-----CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEE
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~ 212 (751)
...|++++++| ....+.. . .....+++.+.++.|+++... ...|+
T Consensus 427 ----------------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~------------~~~I~ 478 (699)
T 1n7d_A 427 ----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVS 478 (699)
T ss_dssp ----------------TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT------------TSCEE
T ss_pred ----------------CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc------------CCeEE
Confidence 03566777743 2222222 1 234467888777788775322 34688
Q ss_pred EEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCce
Q 004475 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (751)
Q Consensus 213 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (751)
+++++++..+.+.... ...++.++++|++.+ ||++.. .....|++++++ +...+
T Consensus 479 v~d~dg~~~~~l~~~~------------~~~P~giavDp~~g~-ly~td~----------~~~~~I~~~~~d---G~~~~ 532 (699)
T 1n7d_A 479 VADTKGVKRKTLFREQ------------GSKPRAIVVDPVHGF-MYWTDW----------GTPAKIKKGGLN---GVDIY 532 (699)
T ss_dssp EEBSSSCCEEEECCCS------------SCCCCCEECCSSSSC-CEECCC----------SSSCCEEBCCSS---SCCCC
T ss_pred EEecCCCceEEEEeCC------------CCCcceEEEccCCCc-EEEccc----------CCCCeEEEEeCC---CCCee
Confidence 9999887655543211 122457899998887 777531 112578888886 44444
Q ss_pred EeEeecee-EE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 293 ILHKLDLR-FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 293 ~l~~~~~~-~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.+...... .. ++|+|+++.|+++. .....|+++++++.
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD---~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG 572 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEE---TTTTEEEEECSSSS
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEe---cCCCeEEEEccCCC
Confidence 44332222 23 89999999998866 23468999999873
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-05 Score=87.39 Aligned_cols=227 Identities=12% Similarity=-0.029 Sum_probs=140.2
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
...|+.+++++++..++..... ....++|.+.++.|+++...
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~-----~~~gl~~d~~~~~lY~sD~~--------------------------------- 444 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS--------------------------------- 444 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCS-----SEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred ccceeEeeccCCcceeeecCCC-----ceEEEeecccCCeeEEeecc---------------------------------
Confidence 3678888888777666654332 24678899988889887321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-----CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
...|++++++| ..+.+.. . .....+++.+.++.||++... ...|++
T Consensus 445 ---------------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v 497 (791)
T 3m0c_C 445 ---------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 497 (791)
T ss_dssp ---------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ---------------ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEE
Confidence 13677777754 2233332 2 445678888899999887433 347899
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
++++++..+.|....+ ..++++++.|.+.+ |||+... ....|++++++ +...+.
T Consensus 498 ~~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g~-LYwtD~g----------~~~~I~~~~~d---G~~~~~ 551 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGLN---GVDIYS 551 (791)
T ss_dssp EETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEECS----------SSCEEEEEETT---SCCEEE
T ss_pred EeCCCCeEEEEEeCCC------------CCcceEEEecCCCC-EEEecCC----------CCCeEEEEecC---CCceEE
Confidence 9999876665533211 23568999999887 8886511 12578899886 655555
Q ss_pred eEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 294 LHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 294 l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.... ..-. ++++++++.||++- .....|+++++++. ..+.+....... ..| +..+.++..|++...
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD---~~~~~I~~~d~dG~--~~~~v~~~~~~l-----~~P-~glav~~~~lYwtD~ 620 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG--NRKTILEDEKRL-----AHP-FSLAVFEDKVFWTDI 620 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEEEECTTTT-----SSE-EEEEEETTEEEEEET
T ss_pred EEeCCCCCceEEEEecCCCeEEEEe---CCCCcEEEEecCCC--ceEEEecCCCcc-----CCC-CEEEEeCCEEEEEEC
Confidence 55433 2234 88899999888865 23458999999884 344444321111 111 334446667766652
Q ss_pred ecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 372 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
....|++++..+|+...+
T Consensus 621 --------------------~~~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 621 --------------------INEAIFSANRLTGSDVNL 638 (791)
T ss_dssp --------------------TTTEEEEEETTTCCCCEE
T ss_pred --------------------CCCEEEEEeCCCCcceEE
Confidence 334777788766654433
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=85.84 Aligned_cols=152 Identities=12% Similarity=0.091 Sum_probs=91.5
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCC-----Ce-ee---ccCCCCccccceeeeeEEecC-CcEE
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-----EA-KP---LFESPDICLNAVFGSFVWVNN-STLL 101 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g-----~~-~~---lt~~~~~~~~~~~~~~~wspD-g~~l 101 (751)
.+...+|||||++||..... +.....|.++++.++ +. +. +.....+ ...+..++|+|+ ++.|
T Consensus 94 ~v~~l~~spdg~~lav~~~s------gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS------SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA--GGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE------TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG--GGSEEEEEECSSCTTEE
T ss_pred cccEEEEcCCCCEEEEEEec------cCCCceEEEEEccccccCCcCCcceeeeeeccCCC--CCceEEEEECCCCCCEE
Confidence 47889999999999863210 044578888888764 11 11 1111111 124778999998 6777
Q ss_pred EEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC-ceEE
Q 004475 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYT 178 (751)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~-~~~~ 178 (751)
+..+.+ ..|.++|+ ++.. .....+ ..+.
T Consensus 166 as~s~D-------------------------------------------------g~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 166 AVCLAD-------------------------------------------------GSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEETT-------------------------------------------------SCEEEEEESSSEEEEEEECGGGCEE
T ss_pred EEEECC-------------------------------------------------CeEEEEEcCCCcceeeccCCCCcee
Confidence 766432 45777777 4522 222223 6788
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEE
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~ 258 (751)
.++|||||++|+....+ ..+.+||.++...+.+....... ......+..+.|++++..+++
T Consensus 197 ~v~wspdg~~lasgs~d-------------g~v~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 197 SVCWSPKGKQLAVGKQN-------------GTVVQYLPTLQEKKVIPCPPFYE------SDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EEEECTTSSCEEEEETT-------------SCEEEECTTCCEEEEECCCTTCC------TTSCEEEEEEEEEETTEEEEE
T ss_pred EEEEcCCCCEEEEEcCC-------------CcEEEEccCCcccccccCCcccC------CCCceeEEEEEEecCceEEEE
Confidence 99999999999887543 36889999854343332221110 001123568999999877334
Q ss_pred E
Q 004475 259 W 259 (751)
Q Consensus 259 ~ 259 (751)
+
T Consensus 258 ~ 258 (434)
T 2oit_A 258 Y 258 (434)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.5e-05 Score=76.14 Aligned_cols=142 Identities=9% Similarity=0.017 Sum_probs=77.8
Q ss_pred CCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC---CccccceeeeeEEe
Q 004475 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP---DICLNAVFGSFVWV 95 (751)
Q Consensus 19 g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~---~~~~~~~~~~~~ws 95 (751)
|+.+.+.... ......+++|||+.++-..+. . .+...||.++ +|+.+++.... ...+ .....++++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~~v~~~~~----~--~~~~~l~~~~--~g~~~~~p~~~~~~~~~~-~~p~gv~~d 75 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRLFLSLHQF----Y--QPEMQVAELT--QDGLIPFPPQSGNAIITF-DTVLGIKSD 75 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCEEEEECGG----G--CCSCSEEEEE--TTEEEESCCCCSSCCCCC-SCEEEEEEC
T ss_pred ceeEEEEEcC--CCcceEEECCCCCEEEEeCCC----C--CCceEEEEEC--CCCeecCCCcccCcccce-eEeeEEEEc
Confidence 5555555333 246778999999754332110 0 1125888888 56555442211 0011 135678999
Q ss_pred cCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCC
Q 004475 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT 173 (751)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~ 173 (751)
|+|+ |++...... . .....|+++|+ +|+ .+.+.-
T Consensus 76 ~~g~-L~v~D~g~~----------------------------~---------------~~~~~i~~~d~~tg~~~~~~~~ 111 (343)
T 2qe8_A 76 GNGI-VWMLDNGNQ----------------------------S---------------KSVPKLVAWDTLNNQLSRVIYL 111 (343)
T ss_dssp SSSE-EEEEECHHH----------------------------H---------------TSCCEEEEEETTTTEEEEEEEC
T ss_pred CCCc-EEEEcCCCC----------------------------c---------------CCCCeEEEEECCCCeEEEEEEC
Confidence 9986 655521000 0 01147888998 675 333321
Q ss_pred ------C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 174 ------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 174 ------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
. ....+++++|++..++++.... .....|+++|+++++..++
T Consensus 112 ~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---------~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 112 PPPITLSNSFVNDLAVDLIHNFVYISDPAP---------DDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp CTTTSCTTCCCCEEEEETTTTEEEEEECCS---------GGGCEEEEEETTTCCEEEE
T ss_pred ChhhcccccccceEEEecCCCEEEEEcCcc---------CCCCeEEEEECCCCCEEEE
Confidence 1 2346889999887887764310 0145789999987665554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00019 Score=70.86 Aligned_cols=181 Identities=14% Similarity=0.050 Sum_probs=107.2
Q ss_pred CCceeEEEEEcCCCCee-eccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchh
Q 004475 59 SCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (751)
Q Consensus 59 ~~~~~l~i~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (751)
.....|++++.++|+.. ++...... ....+.++|||+.|+ . ..
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~~----~~~~~~~~pdG~ilv-s-~~------------------------------ 55 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKGW----ECNSVAATKAGEILF-S-YS------------------------------ 55 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTTC----CCCEEEECTTSCEEE-E-CB------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEeCCCccC----CCcCeEECCCCCEEE-e-CC------------------------------
Confidence 45688999998777743 33222100 245678999998666 3 11
Q ss_pred hhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE
Q 004475 138 TDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (751)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (751)
..|+.+|.+| ...++..+ ..+..+.++|||+.|+..... +..++.+
T Consensus 56 -------------------~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~v 104 (276)
T 3no2_A 56 -------------------KGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILEV 104 (276)
T ss_dssp -------------------SEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEEE
T ss_pred -------------------CCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEEE
Confidence 3577777766 33444433 356688899999988765431 2357788
Q ss_pred eCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe
Q 004475 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (751)
Q Consensus 215 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 294 (751)
+.+++.+..+.-...... .....+.+..++||+. ++... ..+.|+.++.+ ++.....
T Consensus 105 d~~Gk~l~~~~~~~~~~~-------~~~~~~~v~~~~~G~~-lv~~~------------~~~~v~~~d~~---G~~~w~~ 161 (276)
T 3no2_A 105 NMKGEVLSKTEFETGIER-------PHAQFRQINKNKKGNY-LVPLF------------ATSEVREIAPN---GQLLNSV 161 (276)
T ss_dssp CTTSCEEEEEEECCSCSS-------GGGSCSCCEECTTSCE-EEEET------------TTTEEEEECTT---SCEEEEE
T ss_pred eCCCCEEEEEeccCCCCc-------ccccccCceECCCCCE-EEEec------------CCCEEEEECCC---CCEEEEE
Confidence 887776555432111000 0112345678999996 44321 23578888875 5444443
Q ss_pred EeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 295 HKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 295 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
............++|+.|+... ...+|+.++++++
T Consensus 162 ~~~~~~~~~~~~~~g~~~v~~~----~~~~v~~~d~~tG 196 (276)
T 3no2_A 162 KLSGTPFSSAFLDNGDCLVACG----DAHCFVQLNLESN 196 (276)
T ss_dssp ECSSCCCEEEECTTSCEEEECB----TTSEEEEECTTTC
T ss_pred ECCCCccceeEcCCCCEEEEeC----CCCeEEEEeCcCC
Confidence 3322223355689999776544 2347999999865
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=73.92 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=45.8
Q ss_pred hCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 552 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.++|.|++ ++.+|+|.+........+..+++.++++.+ +.+++.++|||+||.+|+.++.++|.
T Consensus 40 ~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 40 PEGYAFYL---LDLPGYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp CTTSEEEE---ECCTTSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred hCCcEEEE---ECCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 34599999 556677776443322455556555555544 34689999999999999999999984
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-05 Score=79.44 Aligned_cols=189 Identities=10% Similarity=-0.002 Sum_probs=106.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~~ 83 (751)
..|+++++.+ ++.+.+... ..... ++|+|||+.|+.+.. .+...||+++..++.. +.+......
T Consensus 152 ~~I~~id~~~----g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~--------~~~~~I~~~d~~~~~~~~~~g~~~~~ 216 (409)
T 3hrp_A 152 PRVRLISVDD----NKVTTVHPG--FKGGK-PAVTKDKQRVYSIGW--------EGTHTVYVYMKASGWAPTRIGQLGST 216 (409)
T ss_dssp TEEEEEETTT----TEEEEEEET--CCBCB-CEECTTSSEEEEEBS--------STTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred CcEEEEECCC----CEEEEeecc--CCCCc-eeEecCCCcEEEEec--------CCCceEEEEEcCCCceeEEeeeccch
Confidence 4577888877 777766532 22233 999999998877531 2223899999887653 333100000
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
... ....++++|++..|++... . ..|++++
T Consensus 217 ~~~-~p~~iav~p~~g~lyv~d~----~---------------------------------------------~~I~~~d 246 (409)
T 3hrp_A 217 FSG-KIGAVALDETEEWLYFVDS----N---------------------------------------------KNFGRFN 246 (409)
T ss_dssp SCS-CCCBCEECTTSSEEEEECT----T---------------------------------------------CEEEEEE
T ss_pred hcC-CcEEEEEeCCCCeEEEEEC----C---------------------------------------------CcEEEEE
Confidence 001 2457799996667877411 0 4788888
Q ss_pred CC-CCceec----CCC--ceE-E-eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCC
Q 004475 164 LD-GTAKDF----GTP--AVY-T-AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (751)
Q Consensus 164 ~~-G~~~~l----t~~--~~~-~-~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (751)
++ +....+ ... ... . .++|+|++..|+++... ...|++++.++. ...+.......+..
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~-~~~~~g~~~~~g~~ 313 (409)
T 3hrp_A 247 VKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGE-CEWFCGSATQKTVQ 313 (409)
T ss_dssp TTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCC-EEEEEECTTCCSCB
T ss_pred CCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCC-EEEEEeCCCCCCcC
Confidence 84 443333 222 112 2 89999988888886433 346889998876 33332221000000
Q ss_pred C--ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccC
Q 004475 235 V--CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA 283 (751)
Q Consensus 235 ~--~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (751)
. .....-..+.+++++|||+ |+++.. .....|+++++
T Consensus 314 dg~~~~~~~~~P~gia~d~dG~--lyvad~----------~~~~~I~~~~~ 352 (409)
T 3hrp_A 314 DGLREEALFAQPNGMTVDEDGN--FYIVDG----------FKGYCLRKLDI 352 (409)
T ss_dssp CEEGGGCBCSSEEEEEECTTCC--EEEEET----------TTTCEEEEEET
T ss_pred CCcccccEeCCCeEEEEeCCCC--EEEEeC----------CCCCEEEEEEC
Confidence 0 0000012356899999997 566541 01246777774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00017 Score=81.68 Aligned_cols=224 Identities=8% Similarity=0.017 Sum_probs=136.6
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc----eeeeeccCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK----LVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~ 230 (751)
..|..+++++ +...+... .....++|.+.+.+|+++... ...|+++++++. ..+.+...
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~------------~~~I~~~~l~g~~~~~~~~~vi~~--- 468 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVISR--- 468 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEECS---
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc------------ceeEEEEeccCCCCCcceeEEEec---
Confidence 4677888854 44555444 667789999988888887443 346888888763 22222111
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spd 308 (751)
....+.++++.+.++. ||++.. ....|++++++ +...+.+.... .... +++.|.
T Consensus 469 ---------~l~~P~GLAvD~~~~~-LY~tD~-----------~~~~I~v~~ld---G~~~~~l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 469 ---------DIQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADTK---GVKRKTLFRENGSKPRAIVVDPV 524 (791)
T ss_dssp ---------SCSCCCEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SSSEEEEEECTTCCEEEEEEETT
T ss_pred ---------CCCCcceeeeeecCCc-EEEEec-----------CCCeEEEEeCC---CCeEEEEEeCCCCCcceEEEecC
Confidence 1123457899999988 888652 23589999986 55555555432 2344 889999
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..|+++.... ...|+++++++. ..+.+.......-. .+++++++..|++..
T Consensus 525 ~g~LYwtD~g~--~~~I~~~~~dG~--~~~~lv~~~l~~P~------GLavD~~~~~LYwaD------------------ 576 (791)
T 3m0c_C 525 HGFMYWTDWGT--PAKIKKGGLNGV--DIYSLVTENIQWPN------GITLDLLSGRLYWVD------------------ 576 (791)
T ss_dssp TTEEEEEECSS--SCEEEEEETTSC--CEEEEECSSCSCEE------EEEEETTTTEEEEEE------------------
T ss_pred CCCEEEecCCC--CCeEEEEecCCC--ceEEEEeCCCCCce------EEEEecCCCeEEEEe------------------
Confidence 88888866322 257999999884 44444433222111 177888888888876
Q ss_pred CCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 389 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
.....|+++++++...+.+..... .+.+. ++++.++++|+++.+. ...|++++..+|+.
T Consensus 577 --~~~~~I~~~d~dG~~~~~v~~~~~--~l~~P---------~glav~~~~lYwtD~~---~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 577 --SKLHSISSIDVNGGNRKTILEDEK--RLAHP---------FSLAVFEDKVFWTDII---NEAIFSANRLTGSD 635 (791)
T ss_dssp --TTTTEEEEEETTSCSCEEEEECTT--TTSSE---------EEEEEETTEEEEEETT---TTEEEEEETTTCCC
T ss_pred --CCCCcEEEEecCCCceEEEecCCC--ccCCC---------CEEEEeCCEEEEEECC---CCEEEEEeCCCCcc
Confidence 233478999998766555544321 11111 2344456777777533 45788888766643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00014 Score=71.51 Aligned_cols=215 Identities=9% Similarity=-0.065 Sum_probs=120.7
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|++++..+ +..+.+. ..........+++|||+ |+++. . ...|++++.+++..+.+......
T Consensus 46 ~~i~~~~~~~----~~~~~~~-~~~~~~p~~i~~~~~g~-l~v~~---------~-~~~i~~~d~~~~~~~~~~~~~~~- 108 (270)
T 1rwi_B 46 GRVVKLATGS----TGTTVLP-FNGLYQPQGLAVDGAGT-VYVTD---------F-NNRVVTLAAGSNNQTVLPFDGLN- 108 (270)
T ss_dssp CEEEEECC---------EECC-CCSCCSCCCEEECTTCC-EEEEE---------T-TTEEEEECTTCSCCEECCCCSCS-
T ss_pred CcEEEecCCC----cccceEe-eCCcCCcceeEECCCCC-EEEEc---------C-CCEEEEEeCCCceEeeeecCCcC-
Confidence 3567776655 4444332 12222467789999998 44431 2 46899999887765554322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
....++++|||+ |++... ....|++++.
T Consensus 109 ---~p~~i~~~~~g~-l~v~~~------------------------------------------------~~~~i~~~~~ 136 (270)
T 1rwi_B 109 ---YPEGLAVDTQGA-VYVADR------------------------------------------------GNNRVVKLAA 136 (270)
T ss_dssp ---SEEEEEECTTCC-EEEEEG------------------------------------------------GGTEEEEECT
T ss_pred ---CCcceEECCCCC-EEEEEC------------------------------------------------CCCEEEEEEC
Confidence 246788999997 555421 0136777766
Q ss_pred CC-CceecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 165 DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 ~G-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
.+ ........ .....++++|||+ |++.... ...|++++.++.......... .
T Consensus 137 ~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~------------~ 191 (270)
T 1rwi_B 137 GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTD------------I 191 (270)
T ss_dssp TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSS------------C
T ss_pred CCceeEeeccccCCCceeEEEeCCCC-EEEEECC------------CCEEEEEecCCCceEeecccC------------C
Confidence 33 22222211 3456789999997 6665332 246889998876543321110 0
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceEEEeeeec
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLALVNETWYK 319 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~ 319 (751)
..+..++++++| . ++++.. ..+.|++++.+ +.....+.... .... +.+++||+ |+++.
T Consensus 192 ~~p~~i~~d~~g-~-l~v~~~-----------~~~~v~~~~~~---~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--- 251 (270)
T 1rwi_B 192 TAPWGIAVDEAG-T-VYVTEH-----------NTNQVVKLLAG---STTSTVLPFTGLNTPLAVAVDSDRT-VYVAD--- 251 (270)
T ss_dssp CSEEEEEECTTC-C-EEEEET-----------TTSCEEEECTT---CSCCEECCCCSCSCEEEEEECTTCC-EEEEE---
T ss_pred CCceEEEECCCC-C-EEEEEC-----------CCCcEEEEcCC---CCcceeeccCCCCCceeEEECCCCC-EEEEE---
Confidence 234578999999 4 666541 12468888875 33333222211 2344 88999997 55544
Q ss_pred ccceeEEEecCCCC
Q 004475 320 TSQTRTWLVCPGSK 333 (751)
Q Consensus 320 ~~~~~l~~~~~~~~ 333 (751)
.....|.++++...
T Consensus 252 ~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 252 RGNDRVVKLTSLEH 265 (270)
T ss_dssp GGGTEEEEECCCGG
T ss_pred CCCCEEEEEcCCCc
Confidence 23357888887663
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0015 Score=72.26 Aligned_cols=123 Identities=4% Similarity=-0.063 Sum_probs=73.2
Q ss_pred EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec------ccccccCCCCCCCeeeCCCCCEEEEeeeecCCc
Q 004475 303 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR------VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE 376 (751)
Q Consensus 303 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~ 376 (751)
+.|.+..+.|+++. .....|+++++++. ....+... ...... -+++...++.|++...
T Consensus 345 ld~d~~~~~iy~sD---~~~~~I~r~~~~g~--~~~~v~~~~~~~~~~~~~p~------glAvD~~~~nLY~td~----- 408 (628)
T 4a0p_A 345 IDYDPLDKQLYWID---SRQNMIRKAQEDGS--QGFTVVVSSVPSQNLEIQPY------DLSIDIYSRYIYWTCE----- 408 (628)
T ss_dssp EEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEEEC--------CCCEE------EEEEETTTTEEEEEET-----
T ss_pred EEEecCCCeEEEEe---cCcceEEEEEcCCC--CceEEEEcccccccccCCcc------eEEeeccCCeEEEEcC-----
Confidence 78888888888765 23457888888774 22333221 011111 1677778888877661
Q ss_pred ceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEE
Q 004475 377 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 456 (751)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~ 456 (751)
....|.+.++++.....+..... .. +..+++.|..+.|+|+.+... ++.|++.
T Consensus 409 ---------------~~~~I~v~~~~G~~~~~l~~~~l----~~-------Pr~iavdp~~g~ly~tD~g~~-~~~I~r~ 461 (628)
T 4a0p_A 409 ---------------ATNVINVTRLDGRSVGVVLKGEQ----DR-------PRAVVVNPEKGYMYFTNLQER-SPKIERA 461 (628)
T ss_dssp ---------------TTTEEEEEETTSCEEEEEEECTT----CC-------EEEEEEETTTTEEEEEEEETT-EEEEEEE
T ss_pred ---------------CCCEEEEEECCCCeEEEEEeCCC----Cc-------eeeEEEecCCCeEEEeecCCC-CCeEEEE
Confidence 23467777886433333332211 12 233578887778998876533 3489999
Q ss_pred EcCCCceeEeec
Q 004475 457 SWPLKKSSQITN 468 (751)
Q Consensus 457 ~~~~g~~~~lt~ 468 (751)
++++...+.|..
T Consensus 462 ~~dG~~~~~l~~ 473 (628)
T 4a0p_A 462 ALDGTEREVLFF 473 (628)
T ss_dssp ETTSCSCEEEEC
T ss_pred eCCCCCcEEEEe
Confidence 998766555554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-05 Score=77.64 Aligned_cols=144 Identities=12% Similarity=0.023 Sum_probs=71.9
Q ss_pred eEEEEEcC-CCC-ceecCCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 157 AQLVLGSL-DGT-AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~-~G~-~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
..|.++|+ +|+ .+.+..+ ..+...+|||||+.++....... ......+.....+.+||+.+++...+......
T Consensus 203 ~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p 281 (356)
T 2w18_A 203 NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KESESLRSPVFQLIVINPKTTLSVGVMLYCLP 281 (356)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence 57888999 785 4555432 23445689999999877553211 11122344567788999987764322110000
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spd 308 (751)
.+ ....-+..+.+|.. ++-.+ ..+.|.++|+. ++.....+.... .... ++||||
T Consensus 282 ~G---------h~~~~lsg~~sg~~-lASgS------------~DgTIkIWDl~--tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 282 PG---------QAGRFLEGDVKDHC-AAAIL------------TSGTIAIWDLL--LGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp TT---------CCCCEEEEEEETTE-EEEEE------------TTSCEEEEETT--TCSEEEEECCC--CCCCEEEECSS
T ss_pred CC---------CcceeEccccCCCE-EEEEc------------CCCcEEEEECC--CCcEEEEecCCCCCeEEEEEECCC
Confidence 00 00001122222333 22222 23578889985 132334444332 2344 789999
Q ss_pred CceEEEeeeecccceeEEE
Q 004475 309 SLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~ 327 (751)
|++|+..+. +..-.||.
T Consensus 338 G~~LaSGS~--D~TIklWd 354 (356)
T 2w18_A 338 DSHLLAGQK--DGNIFVYH 354 (356)
T ss_dssp SSEEEEECT--TSCEEEEE
T ss_pred CCEEEEEEC--CCcEEEec
Confidence 999887662 23345554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0029 Score=69.86 Aligned_cols=165 Identities=8% Similarity=0.055 Sum_probs=102.0
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceEEEeeeeccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
+.++.|.+.+.. ||++.. ....|++++.+ +...+.+.... .... +++.+.++.|+++. ..
T Consensus 351 ~~~ld~d~~~~~-ly~sD~-----------~~~~I~r~~~~---g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD---~~ 412 (619)
T 3s94_A 351 AIAIDYDPVEGY-IYWTDD-----------EVRAIRRSFID---GSGSQFVVTAQIAHPDGIAVDWVARNLYWTD---TG 412 (619)
T ss_dssp EEEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SCSCEEEECSSCSCCCEEEEETTTTEEEEEE---TT
T ss_pred cEEEEEEcCCCe-EEEEeC-----------CCCeEEEEEcC---CCccEEEEECCCCCcCceEEecccCcEEEEe---CC
Confidence 457889987777 888652 23578888886 44444444332 2333 77887788887764 33
Q ss_pred ceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEec
Q 004475 322 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 401 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 401 (751)
...|.++++++. ..+.+.......-. .+++.|....|++.... ...+|++.++
T Consensus 413 ~~~I~v~~~~G~--~~~~l~~~~l~~P~------~iavdp~~G~ly~tD~g-------------------~~~~I~r~~~ 465 (619)
T 3s94_A 413 TDRIEVTRLNGT--MRKILISEDLEEPR------AIVLDPMVGYMYWTDWG-------------------EIPKIERAAL 465 (619)
T ss_dssp TTEEEEEETTSC--SCEEEECTTCCSEE------EEEEETTTTEEEEEECS-------------------SSCEEEEEET
T ss_pred CCcEEEEeCCCC--eEEEEEECCCCCee------eEEEEcCCCcEEEecCC-------------------CCCEEEEEcc
Confidence 468999999884 33455433222111 16678875577776632 2357888888
Q ss_pred CCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 402 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 402 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
++...+.+..... .. +..+++++++++|+++... ...|+.+++++...+.+.
T Consensus 466 dG~~~~~l~~~~l----~~-------P~GlalD~~~~~LY~aD~~---~~~I~~~~~dG~~~~~~~ 517 (619)
T 3s94_A 466 DGSDRVVLVNTSL----GW-------PNGLALDYDEGKIYWGDAK---TDKIEVMNTDGTGRRVLV 517 (619)
T ss_dssp TSCSCEEEECSSC----SC-------EEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEE
T ss_pred CCCccEEEEeCCC----CC-------CeeeEEcccCCEEEEEECC---CCEEEEEecCCCceEEEe
Confidence 7655444433211 11 2335888889999988633 457999998876555443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-06 Score=88.82 Aligned_cols=218 Identities=12% Similarity=0.006 Sum_probs=116.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceee-c-CCCCeEEEEEeeccc---------ccccCCceeEEEEEcCCCC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSW-S-PDGKRIAFSVRVDEE---------DNVSSCKLRVWIADAETGE 73 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~-S-PDG~~iaf~~~~~~~---------~~~~~~~~~l~i~~~~~g~ 73 (751)
..|.+.|+.+ .+..++..+|.+......++ + |||++| |+..+... .....+...+-++|.++.+
T Consensus 112 ~rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~~~v-~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 112 TRVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYV-FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE 186 (595)
T ss_dssp TEEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEE-EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred CEEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCCcEE-EEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence 3588999998 88888777887766666676 6 999998 44421000 0012456789999998866
Q ss_pred -eeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCC-CCCCCCCCceeeccccccccchhhhhccCCccchhhh
Q 004475 74 -AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK-KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (751)
Q Consensus 74 -~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (751)
..++.-+.. ...++.||||++++.++......... .........+.... ..+..... .++..
T Consensus 187 v~~qI~Vgg~------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~------~~~~~~~v---~~Gk~- 250 (595)
T 1fwx_A 187 VAWQVLVSGN------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN------IAEIEKAI---AAGDY- 250 (595)
T ss_dssp EEEEEEESSC------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE------HHHHHHHH---HHTCS-
T ss_pred EEEEEEeCCC------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEee------ccceeEec---cCCCe-
Confidence 344422111 25668999999999987653322100 00000000000000 00000000 00100
Q ss_pred hhheeeEEEEEcC-C--CC--ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 152 DYYTTAQLVLGSL-D--GT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 152 ~~~~~~~l~~~~~-~--G~--~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
. ....+.++|. + ++ ...+..+.....+.+|||||+++++... ...+.++|.++.+.. ..
T Consensus 251 ~--~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~~~~--~~ 314 (595)
T 1fwx_A 251 Q--ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRFDAV--FY 314 (595)
T ss_dssp E--EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGHHHH--HH
T ss_pred e--EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECcccccc--cc
Confidence 0 1135788888 4 32 2344333456689999999999987443 457888988754210 00
Q ss_pred CCCCCCC-CCccCCccCCCceeeeecCCCceEEEEE
Q 004475 227 LPPAEDI-PVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 227 ~~~~~~~-~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
..+.... ...-.....+.+.++|+||| + +|.+.
T Consensus 315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~-aY~t~ 348 (595)
T 1fwx_A 315 ENADPRSAVVAEPELGLGPLHTAFDGRG-N-AYTSL 348 (595)
T ss_dssp SCCCGGGGEEECCBCCSCEEEEEECTTS-E-EEEEE
T ss_pred cccCcccceEEEcCCCCCcceEEECCCC-e-EEEEE
Confidence 0000000 00011223457799999999 6 55543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00016 Score=80.08 Aligned_cols=182 Identities=10% Similarity=0.015 Sum_probs=119.7
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
...+|..+++++.+...+..... +. ....++|.++++.|+++...
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~--~~-~~~~l~~d~~~~~lywtD~~-------------------------------- 57 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTG--VK-EASALDFDVTDNRIYWTDIS-------------------------------- 57 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCS--CS-CEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred eCCcEEEEECCCCCcceEEEcCC--CC-ceEEEEEECCCCEEEEEECC--------------------------------
Confidence 34789999998765433321111 11 24578999998899988321
Q ss_pred hccCCccchhhhhhheeeEEEEEcCCC-CceecCC-C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeC
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 216 (751)
...|++++++| ..+.+.. . .....+++.+.++.|+++... ...|.+.++
T Consensus 58 ----------------~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~------------~~~I~v~~~ 109 (628)
T 4a0p_A 58 ----------------LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG------------TNRIEVSKL 109 (628)
T ss_dssp ----------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEET
T ss_pred ----------------CCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC------------CCEEEEEec
Confidence 14788888876 4444433 2 345578888888889887432 347889999
Q ss_pred CCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe
Q 004475 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (751)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 296 (751)
+++..+.|.... -..+++++..|.... ||++.. .....|++++++ +...+.+..
T Consensus 110 dG~~~~~l~~~~------------l~~P~~iavdp~~G~-lY~tD~----------g~~~~I~r~~~d---G~~~~~l~~ 163 (628)
T 4a0p_A 110 DGQHRQVLVWKD------------LDSPRALALDPAEGF-MYWTEW----------GGKPKIDRAAMD---GSERTTLVP 163 (628)
T ss_dssp TSTTCEEEECSS------------CCCEEEEEEETTTTE-EEEEEC----------SSSCEEEEEETT---SCSCEEEEC
T ss_pred CCCcEEEEEeCC------------CCCcccEEEccCCCe-EEEeCC----------CCCCEEEEEeCC---CCceEEEEC
Confidence 887655543211 123568999997766 888641 123589999986 666666654
Q ss_pred eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 297 LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 297 ~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
.-.... ++++++++.|+++- .....|+.+++++.
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD---~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTD---LDTNLIESSNMLGL 198 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC
T ss_pred CCCCcceEEEccccCEEEEEE---CCCCEEEEEcCCCC
Confidence 333344 88999999988865 23458999999884
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-05 Score=90.38 Aligned_cols=226 Identities=8% Similarity=0.022 Sum_probs=131.7
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc----eeeeeccCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK----LVRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~ 230 (751)
..|+++++++ +...+... .....++|++++..|+++... ...|+++++++. ....+..
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~------------~~~I~~~~~~g~~~~~~~~~~i~---- 449 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVIS---- 449 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT------------TTSBEEEESCCCCC-CCCCCBCC----
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC------------CCeEEEEecCCCCCCcceEEEEe----
Confidence 4678888855 44444433 556688999999888886332 346888888762 2211110
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spd 308 (751)
.....+..+++.+.+.. ||++.. ..+.|++++++ +...+.+.... .... ++++|+
T Consensus 450 --------~~~~~P~glavD~~~g~-LY~tD~-----------~~~~I~v~d~d---g~~~~~l~~~~~~~P~giavDp~ 506 (699)
T 1n7d_A 450 --------RDIQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADTK---GVKRKTLFREQGSKPRAIVVDPV 506 (699)
T ss_dssp --------SCC--CCCEECCCSSSB-CEECCT-----------TTSCEEEEBSS---SCCEEEECCCSSCCCCCEECCSS
T ss_pred --------CCCCCcceEEEEeeCCc-EEEEec-----------cCCeEEEEecC---CCceEEEEeCCCCCcceEEEccC
Confidence 01112346788877777 677431 23578888875 54444444322 2233 789998
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+..|+++... ....|+++++++. ..+.+...... ....++|+|+++.|++...
T Consensus 507 ~g~ly~td~~--~~~~I~~~~~dG~--~~~~l~~~~l~------~PnGlavd~~~~~LY~aD~----------------- 559 (699)
T 1n7d_A 507 HGFMYWTDWG--TPAKIKKGGLNGV--DIYSLVTENIQ------WPNGITLDLLSGRLYWVDS----------------- 559 (699)
T ss_dssp SSCCEECCCS--SSCCEEBCCSSSC--CCCEESCSSCS------SCCCEEECTTTCCEEEEET-----------------
T ss_pred CCcEEEcccC--CCCeEEEEeCCCC--CeeEEEeCCCC------CccEEEEeccCCEEEEEec-----------------
Confidence 8888776532 1257999998874 33333322221 1122889999998988772
Q ss_pred CCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 389 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
....|+++++++...+.+...... . .....++.|++.|+++.+. ...|++++..+|+..+
T Consensus 560 ---~~~~I~~~d~dG~~~~~~~~~~~~---------~--~~P~glavd~~~lywtd~~---~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 560 ---KLHSISSIDVNGGNRKTILEDEKR---------L--AHPFSLAVFEDKVFWTDII---NEAIFSANRLTGSDVN 619 (699)
T ss_dssp ---TTTEEEEECSSSSCCEEECCCSSS---------C--SSCCCCEEETTEEEEECST---TTCEEEEETTTEEEEE
T ss_pred ---CCCeEEEEccCCCceEEEEecCCc---------C--CCceEeEEECCEEEEEeCC---CCeEEEEEccCCCceE
Confidence 234788899876544444332110 0 1112334466778777532 4579999987776543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0002 Score=72.78 Aligned_cols=229 Identities=13% Similarity=0.050 Sum_probs=121.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCC--eeeccCCC--
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESP-- 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~--~~~lt~~~-- 81 (751)
.|+++|..+ |+................+++|||+ |+++. .....|++++.++.. ...+....
T Consensus 70 ~i~~~d~~~----g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d---------~~~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 70 TILVIDPNN----AEILQSSGKNLFYLPHGLSIDTDGN-YWVTD---------VALHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CEEEECTTT----CCEEEEECTTTCSSEEEEEECTTSC-EEEEE---------TTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred cEEEEECCC----CeEEeccCCCccCCceEEEECCCCC-EEEEE---------CCCCEEEEEeCCCCeEEEEEecccCCC
Confidence 588888877 7776543211112456788999998 54432 345789999986652 33331100
Q ss_pred ---CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 82 ---DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 82 ---~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
...+. ....++++|++..|+++... ....
T Consensus 136 g~~~~~~~-~P~~ia~~~~~g~lyv~d~~-----------------------------------------------~~~~ 167 (329)
T 3fvz_A 136 GSDQNHFC-QPTDVAVEPSTGAVFVSDGY-----------------------------------------------CNSR 167 (329)
T ss_dssp CCSTTCCS-SEEEEEECTTTCCEEEEECS-----------------------------------------------SCCE
T ss_pred CCCccccC-CCcEEEEeCCCCeEEEEeCC-----------------------------------------------CCCe
Confidence 01111 24578999944456655210 0146
Q ss_pred EEEEcCCCCce-ecCC----------C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeec
Q 004475 159 LVLGSLDGTAK-DFGT----------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELC 225 (751)
Q Consensus 159 l~~~~~~G~~~-~lt~----------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~ 225 (751)
|++++.+|+.. .+.. . .....++++||+..|+++... ...|.+|+.++++ ...+.
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEEC
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEEe
Confidence 67777766332 2211 1 236689999997778876433 3478899998443 33332
Q ss_pred cCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE---eeceeEE
Q 004475 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFS 302 (751)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~ 302 (751)
... ....+..++++| | +++.... ...........+++++... +.....+. .......
T Consensus 236 ~~~-----------~~~~~~~~~~~p-g---~~~~~~g---~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~ 295 (329)
T 3fvz_A 236 HAS-----------FGRNVFAISYIP-G---FLFAVNG---KPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPH 295 (329)
T ss_dssp CTT-----------TTTCEEEEEEET-T---EEEEEEC---CCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEE
T ss_pred ccc-----------cCCCcceeeecC-C---EEEEeCC---CEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCee
Confidence 111 112345788999 3 3343211 1111222334778887641 22222221 1112234
Q ss_pred -EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 303 -VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 303 -~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++++||| .|+.+. ....+|+++++++
T Consensus 296 ~ia~~~dG-~lyvad---~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 296 DIVASEDG-TVYIGD---AHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECTTS-EEEEEE---SSSCCEEEEEEEE
T ss_pred EEEECCCC-CEEEEE---CCCCEEEEEeCCc
Confidence 8899999 454433 2234677777655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00022 Score=71.63 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCceec-CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 157 AQLVLGSLDGTAKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 157 ~~l~~~~~~G~~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
..|++++.+|+...+ ........++++|||+ |++...... ...++.++..+++.+.+...+.. .
T Consensus 53 ~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~----------~~~v~~~d~~~g~~~~~~~~~~~-~--- 117 (306)
T 2p4o_A 53 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNAD----------SIPVVSLVKSDGTVETLLTLPDA-I--- 117 (306)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECTT----------SCEEEEEECTTSCEEEEEECTTC-S---
T ss_pred CeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEeccCC----------cceEEEEcCCCCeEEEEEeCCCc-c---
Confidence 478888887744333 2235667899999998 555432210 12477888777766655433211 0
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe--E------e--ec-eeEEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--H------K--LD-LRFSVS 304 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~------~--~~-~~~~~~ 304 (751)
....++..+++ . ++++.. ..+.||+++.+ ++..+.. . . .. .... .
T Consensus 118 -------~~~g~~~~~~~-~-~~v~d~-----------~~g~i~~~d~~---~~~~~v~~~~~~~~~~~~~~~~~~pn-g 173 (306)
T 2p4o_A 118 -------FLNGITPLSDT-Q-YLTADS-----------YRGAIWLIDVV---QPSGSIWLEHPMLARSNSESVFPAAN-G 173 (306)
T ss_dssp -------CEEEEEESSSS-E-EEEEET-----------TTTEEEEEETT---TTEEEEEEECGGGSCSSTTCCSCSEE-E
T ss_pred -------ccCcccccCCC-c-EEEEEC-----------CCCeEEEEeCC---CCcEeEEEECCccccccccCCCCcCC-C
Confidence 01123333433 3 444321 23577877763 2111110 0 0 01 1112 2
Q ss_pred EecCCceEEEeeeecccceeEEEecCCC-CCC-cceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPGS-KDV-APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~~-~~~-~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
.+|||+.|+++.. ...+|++++.++ +.. ..+.+.... ..--+++++||+ |++...
T Consensus 174 is~dg~~lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~~--------~P~gi~vd~dG~-l~va~~----------- 230 (306)
T 2p4o_A 174 LKRFGNFLYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQT--------NIDDFAFDVEGN-LYGATH----------- 230 (306)
T ss_dssp EEEETTEEEEEET---TTTEEEEEEBCTTSCBCCCEEEEESC--------CCSSEEEBTTCC-EEEECB-----------
T ss_pred cCcCCCEEEEEeC---CCCEEEEEEeCCCCCCCccEEEeccC--------CCCCeEECCCCC-EEEEeC-----------
Confidence 3899998877652 345788888765 211 112222111 111178899996 444331
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeec---cCCCEEEEEEec
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN---LNQLKILTSKES 446 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~ 446 (751)
....|.+++.+ |+...+...... ...+..++|+ +|+++|+++...
T Consensus 231 ---------~~~~V~~~~~~-G~~~~~~~~~~~---------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 ---------IYNSVVRIAPD-RSTTIIAQAEQG---------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ---------TTCCEEEECTT-CCEEEEECGGGT---------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ---------CCCeEEEECCC-CCEEEEeecccc---------cCCceEEEEecccCCCCEEEEECCC
Confidence 12368888875 655444222110 1112235777 788888887643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00085 Score=66.78 Aligned_cols=272 Identities=12% Similarity=0.023 Sum_probs=146.1
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
......++|||+ |.++. .....|.+++.+ ++.+.+..... ......++++++|+ |++....
T Consensus 21 ~p~~i~~d~~g~-l~v~~---------~~~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~~---- 81 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQ---------HKANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGD-IWFTENG---- 81 (300)
T ss_dssp CEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSC-EEEEETT----
T ss_pred CcceeeECCCCC-EEEEc---------CCCCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCC-EEEEecC----
Confidence 456778999997 33321 344688899987 66554422111 01356778889997 5544210
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC--C-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~--~-~~~~~~~~SpDG~~ 188 (751)
...|++++.+|+.+.+.. . .....++++++|+
T Consensus 82 --------------------------------------------~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~- 116 (300)
T 2qc5_A 82 --------------------------------------------ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD- 116 (300)
T ss_dssp --------------------------------------------TTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTC-
T ss_pred --------------------------------------------CCeEEEECCCCCeEEecCCCCCCCCccceECCCCC-
Confidence 136788887775544322 2 4567888999997
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.... ...|++++.+ ++...+. .+. ....+..+.++++|+ ++++..
T Consensus 117 l~v~~~~------------~~~i~~~~~~-g~~~~~~-~~~----------~~~~~~~i~~d~~g~--l~v~~~------ 164 (300)
T 2qc5_A 117 IWFTQLN------------GDRIGKLTAD-GTIYEYD-LPN----------KGSYPAFITLGSDNA--LWFTEN------ 164 (300)
T ss_dssp EEEEETT------------TTEEEEECTT-SCEEEEE-CSS----------TTCCEEEEEECTTSS--EEEEET------
T ss_pred EEEEccC------------CCeEEEECCC-CCEEEcc-CCC----------CCCCceeEEECCCCC--EEEEec------
Confidence 5554322 2358888887 4343321 110 112345789999997 455431
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec-c
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-V 344 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~ 344 (751)
..+.|++++.+ + ....+.. ...... +.++++|+ |+++.. ....|++++.++ ........ .
T Consensus 165 -----~~~~i~~~~~~---g-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~~g---~~~~~~~~~~ 228 (300)
T 2qc5_A 165 -----QNNSIGRITNT---G-KLEEYPLPTNAAAPVGITSGNDGA-LWFVEI---MGNKIGRITTTG---EISEYDIPTP 228 (300)
T ss_dssp -----TTTEEEEECTT---C-CEEEEECSSTTCCEEEEEECTTSS-EEEEET---TTTEEEEECTTC---CEEEEECSST
T ss_pred -----CCCeEEEECCC---C-cEEEeeCCCCCCCcceEEECCCCC-EEEEcc---CCCEEEEEcCCC---cEEEEECCCC
Confidence 12467777763 2 2222221 112334 78889886 544431 234688888843 22222111 1
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 424 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 424 (751)
..... .++++++|+ |++... ....|.+++. +++...+.....
T Consensus 229 ~~~~~------~i~~d~~g~-l~v~~~--------------------~~~~i~~~~~-~g~~~~~~~~~~---------- 270 (300)
T 2qc5_A 229 NARPH------AITAGKNSE-IWFTEW--------------------GANQIGRITN-DNTIQEYQLQTE---------- 270 (300)
T ss_dssp TCCEE------EEEECSTTC-EEEEET--------------------TTTEEEEECT-TSCEEEEECCST----------
T ss_pred CCCce------EEEECCCCC-EEEecc--------------------CCCeEEEECC-CCcEEEEECCcc----------
Confidence 11111 167888887 544441 1236888888 455443321111
Q ss_pred ecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 425 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 425 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
......+.++++|+ |++.. . . .|+++++.
T Consensus 271 ~~~~~~i~~~~~g~-l~v~~-~---~-~i~~~~p~ 299 (300)
T 2qc5_A 271 NAEPHGITFGKDGS-VWFAL-K---C-KIGKLNLN 299 (300)
T ss_dssp TCCCCCEEECTTSC-EEEEC-S---S-EEEEEEEC
T ss_pred CCccceeEeCCCCC-EEEEc-c---C-ceEEeCCC
Confidence 11133467788886 44432 2 2 67777753
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=86.74 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=44.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcee---E
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFC---C 628 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~---~ 628 (751)
+.|++++. .+. ..........+++.+.++.+ . ...++.++||||||.+|+.+|.+. |+++. +
T Consensus 49 ~~v~~~d~---~~~----~~~~~~~~~a~~~~~~i~~~---~--~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~ 116 (283)
T 3tjm_A 49 IPTYGLQC---TRA----APLDSIHSLAAYYIDCIRQV---Q--PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 116 (283)
T ss_dssp SCEEEECC---CTT----SCCSCHHHHHHHHHHHHTTT---C--CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCE
T ss_pred ceEEEEec---CCC----CCCCCHHHHHHHHHHHHHHh---C--CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccce
Confidence 78888444 221 11223445555444444322 1 125799999999999999999865 77788 8
Q ss_pred EEEccCC
Q 004475 629 GIARSGS 635 (751)
Q Consensus 629 ~v~~~~~ 635 (751)
++++++.
T Consensus 117 lvlid~~ 123 (283)
T 3tjm_A 117 LFLFDGS 123 (283)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 8888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00026 Score=71.15 Aligned_cols=244 Identities=13% Similarity=0.092 Sum_probs=124.8
Q ss_pred cccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcE
Q 004475 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (751)
Q Consensus 21 ~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~ 100 (751)
.+.+.+++.+.....++|+|||+ |+++. .....|++++.+++..+.+ .... ....++++|||+
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~-lyv~d---------~~~~~I~~~d~~g~~~~~~-~~~~-----~p~gia~~~dG~- 84 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGT-IFVTN---------HEVGEIVSITPDGNQQIHA-TVEG-----KVSGLAFTSNGD- 84 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEE---------TTTTEEEEECTTCCEEEEE-ECSS-----EEEEEEECTTSC-
T ss_pred ceEeEeCCCCCCcceEEECCCCC-EEEEe---------CCCCeEEEECCCCceEEEE-eCCC-----CceeEEEcCCCc-
Confidence 34444455444556789999997 65542 2457899999876533332 2222 246789999998
Q ss_pred EEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ce
Q 004475 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AV 176 (751)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~ 176 (751)
|++...... ...|+.++. +|+.+.+... ..
T Consensus 85 l~vad~~~~----------------------------------------------~~~v~~~d~~~g~~~~~~~~~~~~~ 118 (306)
T 2p4o_A 85 LVATGWNAD----------------------------------------------SIPVVSLVKSDGTVETLLTLPDAIF 118 (306)
T ss_dssp EEEEEECTT----------------------------------------------SCEEEEEECTTSCEEEEEECTTCSC
T ss_pred EEEEeccCC----------------------------------------------cceEEEEcCCCCeEEEEEeCCCccc
Confidence 555421100 025777776 6765544321 22
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeee-ccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
...++..+++ .+++.... ...||++|.+++..+.. ....+....+ ...-.....+ +|||++
T Consensus 119 ~~g~~~~~~~-~~~v~d~~------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~---~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 119 LNGITPLSDT-QYLTADSY------------RGAIWLIDVVQPSGSIWLEHPMLARSNS---ESVFPAANGL--KRFGNF 180 (306)
T ss_dssp EEEEEESSSS-EEEEEETT------------TTEEEEEETTTTEEEEEEECGGGSCSST---TCCSCSEEEE--EEETTE
T ss_pred cCcccccCCC-cEEEEECC------------CCeEEEEeCCCCcEeEEEECCccccccc---cCCCCcCCCc--CcCCCE
Confidence 2334444454 45443211 34789999876432211 0000000000 0000122344 999988
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCC--CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
||++.. ....|++++++. ++. ....+... .... +++++||+ | |.++. ....|.+++.++
T Consensus 181 -lyv~d~-----------~~~~I~~~~~~~-~g~~~~~~~~~~~-~~P~gi~vd~dG~-l-~va~~--~~~~V~~~~~~G 242 (306)
T 2p4o_A 181 -LYVSNT-----------EKMLLLRIPVDS-TDKPGEPEIFVEQ-TNIDDFAFDVEGN-L-YGATH--IYNSVVRIAPDR 242 (306)
T ss_dssp -EEEEET-----------TTTEEEEEEBCT-TSCBCCCEEEEES-CCCSSEEEBTTCC-E-EEECB--TTCCEEEECTTC
T ss_pred -EEEEeC-----------CCCEEEEEEeCC-CCCCCccEEEecc-CCCCCeEECCCCC-E-EEEeC--CCCeEEEECCCC
Confidence 777541 235788888752 111 12222222 2223 78999996 4 33322 235788898865
Q ss_pred CCCcceeeeecccccccCCCCCCCeeeC---CCCCEEEEee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTRT---STGTNVIAKI 370 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s---pDG~~l~~~~ 370 (751)
. ...+....... .....++|+ ||++.|++..
T Consensus 243 ~---~~~~~~~~~~~----~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 S---TTIIAQAEQGV----IGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp C---EEEEECGGGTC----TTEEEEEECCSTTTTTEEEEEE
T ss_pred C---EEEEeeccccc----CCceEEEEecccCCCCEEEEEC
Confidence 2 12221111100 001116788 8998888877
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00047 Score=72.73 Aligned_cols=158 Identities=11% Similarity=0.136 Sum_probs=96.8
Q ss_pred ccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 33 ~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
....+++| ++..|+++. .. ..|++++++++..+.+..... ....++|+++|++|+++.......
T Consensus 139 P~~lavdp~~~g~Lyv~d---------~~-~~I~~id~~~~~v~~~~~~~~-----~P~~ia~d~~G~~lyvad~~~~~~ 203 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVG---------EQ-HPTRLIDFEKEYVSTVYSGLS-----KVRTICWTHEADSMIITNDQNNND 203 (430)
T ss_dssp CCEEEEETTEEEEEEEEE---------BT-EEEEEEETTTTEEEEEECCCS-----CEEEEEECTTSSEEEEEECCSCTT
T ss_pred CCEEEECCCCCCeEEEEe---------CC-CcEEEEECCCCEEEEEecCCC-----CcceEEEeCCCCEEEEEeCCCCcc
Confidence 45678999 566766642 12 789999998887766644222 246789999999888874321110
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc---eecCCCceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA---KDFGTPAVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~---~~lt~~~~~~~~~~SpDG~~ 188 (751)
...++.++.+|.. +.+........++++|++.+
T Consensus 204 --------------------------------------------~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~ 239 (430)
T 3tc9_A 204 --------------------------------------------RPNNYILTRESGFKVITELTKGQNCNGAETHPINGE 239 (430)
T ss_dssp --------------------------------------------SEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCC
T ss_pred --------------------------------------------cceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCE
Confidence 0234445554422 22222234457889996667
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+++... ...|++++.+++....+..... ....+.++|+|||++ |+++..
T Consensus 240 lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~-----------~~~P~gia~~pdG~~-lyv~d~------ 289 (430)
T 3tc9_A 240 LYFNSWN------------AGQVFRYDFTTQETTPLFTIQD-----------SGWEFHIQFHPSGNY-AYIVVV------ 289 (430)
T ss_dssp EEEEETT------------TTEEEEEETTTTEEEEEEECSS-----------SSCCEEEEECTTSSE-EEEEET------
T ss_pred EEEEECC------------CCEEEEEECCCCcEEEEEEcCC-----------CCcceeEEEcCCCCE-EEEEEC------
Confidence 8776433 3479999998876544322211 123458999999998 677541
Q ss_pred ccccCcccceeeccCC
Q 004475 269 NVEVSPRDIIYTQPAE 284 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~ 284 (751)
....|++++.+
T Consensus 290 -----~~~~I~~~~~d 300 (430)
T 3tc9_A 290 -----NQHYILRSDYD 300 (430)
T ss_dssp -----TTTEEEEEEEE
T ss_pred -----CCCEEEEEeCC
Confidence 22467776654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00029 Score=68.06 Aligned_cols=212 Identities=8% Similarity=-0.026 Sum_probs=115.2
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
.+.+.|+||| +|+++.... ..+.|.++|+.+++...-...+. ......+.++|++
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~----------~~s~v~~iD~~tg~v~~~i~l~~-------------~~fgeGi~~~g~~- 77 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLY----------GRSSVRQVALQTGKVENIHKMDD-------------SYFGEGLTLLNEK- 77 (266)
T ss_dssp EEEEEECSTT-EEEEEECST----------TTCEEEEEETTTCCEEEEEECCT-------------TCCEEEEEEETTE-
T ss_pred cccEEEeCCC-eEEEECCCC----------CCCEEEEEECCCCCEEEEEecCC-------------CcceEEEEEeCCE-
Confidence 4678899996 677654321 13579999999876543322111 1112245556777
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCCc
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 336 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (751)
|+.+. ...+.++++|.+. ......+... .......++||++|+.+. +...|+.+|+.+. ..
T Consensus 78 lyv~t-----------~~~~~v~viD~~t--~~v~~~i~~g-~~~g~glt~Dg~~l~vs~----gs~~l~viD~~t~-~v 138 (266)
T 2iwa_A 78 LYQVV-----------WLKNIGFIYDRRT--LSNIKNFTHQ-MKDGWGLATDGKILYGSD----GTSILYEIDPHTF-KL 138 (266)
T ss_dssp EEEEE-----------TTCSEEEEEETTT--TEEEEEEECC-SSSCCEEEECSSSEEEEC----SSSEEEEECTTTC-CE
T ss_pred EEEEE-----------ecCCEEEEEECCC--CcEEEEEECC-CCCeEEEEECCCEEEEEC----CCCeEEEEECCCC-cE
Confidence 66654 1336899999751 1122223222 011145788999887543 2468999999885 22
Q ss_pred ceeeeecc-cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 337 PRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 337 ~~~l~~~~-~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
...+.-.. ...+. ....+.|. || .|+...+ ....|.++|.++++....+...+-
T Consensus 139 ~~~I~Vg~~~~p~~---~~nele~~-dg-~lyvn~~--------------------~~~~V~vID~~tg~V~~~I~~~g~ 193 (266)
T 2iwa_A 139 IKKHNVKYNGHRVI---RLNELEYI-NG-EVWANIW--------------------QTDCIARISAKDGTLLGWILLPNL 193 (266)
T ss_dssp EEEEECEETTEECC---CEEEEEEE-TT-EEEEEET--------------------TSSEEEEEETTTCCEEEEEECHHH
T ss_pred EEEEEECCCCcccc---cceeEEEE-CC-EEEEecC--------------------CCCeEEEEECCCCcEEEEEECCCc
Confidence 22222111 01000 00014566 66 4554441 234799999999988666553210
Q ss_pred -hh-hhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 416 -KY-FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 416 -~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
.. ...........+.++++|++++++++... -+.++++++..
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~---~~~v~~i~l~~ 237 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL---WPKLFEIKLHL 237 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT---CSEEEEEEEEE
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCC---CCeEEEEEEec
Confidence 00 00000001123458999999999888644 35688888654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00084 Score=66.48 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCc-eecC--CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFG--TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt--~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
..|++++.+|+. ..+. .. .....++++|||+ |+++... ...|++|+.++.....+... +.
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~-g~-- 205 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGE-GI-- 205 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCT-TT--
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC------------CCEEEEEcCCCCEEEEEccC-Cc--
Confidence 467888887743 3332 12 4567899999998 5554322 34688999877655544221 10
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCccc-ceeeccCCCCCCCCceEeEeece--eEE-EEEecC
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD-IIYTQPAEPAEGEKPEILHKLDL--RFS-VSWCDD 308 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~--~~~-~~~spd 308 (751)
...+..++++|||+ ++++.. ..+ .|.+++.+ +.....+..... ... ++++||
T Consensus 206 --------~~~p~~i~~d~~G~--l~v~~~-----------~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 206 --------TNYPIGVGINSNGE--ILIADN-----------HNNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp --------SCSEEEEEECTTCC--EEEEEC-----------SSSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETT
T ss_pred --------cCCCcEEEECCCCC--EEEEeC-----------CCCEEEEEECCC---CCEEEEEcccCCCCcceeEEECCC
Confidence 02345789999996 455431 122 68888764 433344433221 244 889999
Q ss_pred CceEEEe
Q 004475 309 SLALVNE 315 (751)
Q Consensus 309 g~~l~~~ 315 (751)
|+ |+++
T Consensus 262 g~-l~vs 267 (286)
T 1q7f_A 262 GS-VVLA 267 (286)
T ss_dssp TE-EEEE
T ss_pred Cc-EEEE
Confidence 97 4444
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0015 Score=64.84 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=107.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+++|||+ |.++. .....|++++.+ ++.+.+..... ......++++|||+ |++....
T Consensus 58 ~~~~i~~~~~g~-l~v~~---------~~~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~~---- 118 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTE---------NAANKIGRITKK-GIIKEYTLPNP---DSAPYGITEGPNGD-IWFTEMN---- 118 (299)
T ss_dssp CEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSC-EEEEETT----
T ss_pred ceeeEEECCCCC-EEEeC---------CCCCeEEEECCC-CcEEEEeCCCc---CCCceeeEECCCCC-EEEEecC----
Confidence 456778899986 33332 234678888876 44444431111 01246778889986 5554211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceecCC--C-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~lt~--~-~~~~~~~~SpDG~~ 188 (751)
...|++++.+|+...+.. . .....++++|||+
T Consensus 119 --------------------------------------------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~- 153 (299)
T 2z2n_A 119 --------------------------------------------GNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA- 153 (299)
T ss_dssp --------------------------------------------TTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-
T ss_pred --------------------------------------------CceEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-
Confidence 046788888775544322 2 4567889999995
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.... ...|++++. +++...+. .+. ....+..+.++++|+ ++++..
T Consensus 154 l~v~~~~------------~~~i~~~~~-~g~~~~~~-~~~----------~~~~~~~i~~~~~g~--l~v~~~------ 201 (299)
T 2z2n_A 154 LWFTENQ------------NNAIGRITE-SGDITEFK-IPT----------PASGPVGITKGNDDA--LWFVEI------ 201 (299)
T ss_dssp EEEEETT------------TTEEEEECT-TCCEEEEE-CSS----------TTCCEEEEEECTTSS--EEEEET------
T ss_pred EEEEeCC------------CCEEEEEcC-CCcEEEee-CCC----------CCCcceeEEECCCCC--EEEEcc------
Confidence 5554322 246888988 44444321 110 112345789999987 455431
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEe--eceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.|++++.. + ....+.. ...... +.++++|+ |+++. .....|++++.++
T Consensus 202 -----~~~~i~~~~~~---g-~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~---~~~~~i~~~d~~g 255 (299)
T 2z2n_A 202 -----IGNKIGRITTS---G-EITEFKIPTPNARPHAITAGAGID-LWFTE---WGANKIGRLTSNN 255 (299)
T ss_dssp -----TTTEEEEECTT---C-CEEEEECSSTTCCEEEEEECSTTC-EEEEE---TTTTEEEEEETTT
T ss_pred -----CCceEEEECCC---C-cEEEEECCCCCCCceeEEECCCCC-EEEec---cCCceEEEECCCC
Confidence 12467777762 3 2222211 123344 78899988 54443 1234788888843
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00062 Score=67.04 Aligned_cols=82 Identities=10% Similarity=-0.071 Sum_probs=53.1
Q ss_pred CcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
....|+++|..+ |+...-...........+.++|||+.|+. . ...|+.++.++....++.....
T Consensus 13 ~~~~v~~~d~~t----G~~~w~~~~~~~~~~~~~~~~pdG~ilvs-~-----------~~~V~~~d~~G~~~W~~~~~~~ 76 (276)
T 3no2_A 13 GWNKIAIINKDT----KEIVWEYPLEKGWECNSVAATKAGEILFS-Y-----------SKGAKMITRDGRELWNIAAPAG 76 (276)
T ss_dssp TCSEEEEEETTT----TEEEEEEECCTTCCCCEEEECTTSCEEEE-C-----------BSEEEEECTTSCEEEEEECCTT
T ss_pred CCCEEEEEECCC----CeEEEEeCCCccCCCcCeEECCCCCEEEe-C-----------CCCEEEECCCCCEEEEEcCCCC
Confidence 456789999977 88875443322224778899999986662 1 2468888884333444433211
Q ss_pred ccccceeeeeEEecCCcEEEEe
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~ 104 (751)
. .+..+.++|||+.|+..
T Consensus 77 ~----~~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 77 C----EMQTARILPDGNALVAW 94 (276)
T ss_dssp C----EEEEEEECTTSCEEEEE
T ss_pred c----cccccEECCCCCEEEEe
Confidence 1 25577899999987765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00077 Score=65.07 Aligned_cols=165 Identities=5% Similarity=-0.058 Sum_probs=88.9
Q ss_pred eEEEEEcC-CCCce-ecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCC
Q 004475 157 AQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~ 233 (751)
+.|..+|+ +|+.. .+.-+.......++++|++|++.... ...++++|+++.+.. ++... .
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------------~~~v~viD~~t~~v~~~i~~g-----~ 106 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------------KNIGFIYDRRTLSNIKNFTHQ-----M 106 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------------CSEEEEEETTTTEEEEEEECC-----S
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------------CCEEEEEECCCCcEEEEEECC-----C
Confidence 58999999 78543 22212212222344457788877432 457999999876543 33111 0
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec--e---eEE-EEEec
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--L---RFS-VSWCD 307 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~---~~~-~~~sp 307 (751)
...+..++||++ ++.+. ..+.|+++|.+. ......+.-.. . ... +.|.
T Consensus 107 ----------~~g~glt~Dg~~-l~vs~------------gs~~l~viD~~t--~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 107 ----------KDGWGLATDGKI-LYGSD------------GTSILYEIDPHT--FKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp ----------SSCCEEEECSSS-EEEEC------------SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-
T ss_pred ----------CCeEEEEECCCE-EEEEC------------CCCeEEEEECCC--CcEEEEEEECCCCcccccceeEEEE-
Confidence 113578889998 66542 235899998752 12233333221 1 233 6777
Q ss_pred CCceEEEeeeecccceeEEEecCCCCCCcceeeeecc-c--c---cc-cCCCCCCCeeeCCCCCEEEEee
Q 004475 308 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-F--E---NV-YSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~--~---~~-~~~~~~~~~~~spDG~~l~~~~ 370 (751)
|| .|+ .... ....|.++|+.++ +........ . . .. ........++|+|||+.|+...
T Consensus 161 dg-~ly-vn~~--~~~~V~vID~~tg--~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 161 NG-EVW-ANIW--QTDCIARISAKDG--TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TT-EEE-EEET--TSSEEEEEETTTC--CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CC-EEE-EecC--CCCeEEEEECCCC--cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 77 454 3322 2358999999886 222222211 0 0 00 0000011278999999888777
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0035 Score=62.23 Aligned_cols=192 Identities=16% Similarity=0.108 Sum_probs=108.8
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....+++|||+ |+++. .....|++++.+ ++.+.+...... .....++.+|+|+ |++....
T Consensus 63 ~~~~i~~~~~g~-l~v~~---------~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g~-l~v~~~~---- 123 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTE---------NGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNGD-IWFTQLN---- 123 (300)
T ss_dssp CEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTTC-EEEEETT----
T ss_pred cceeEEECCCCC-EEEEe---------cCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCCC-EEEEccC----
Confidence 456677889886 43332 334678899887 665544321111 1246778888886 4444211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCceec--CCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF--GTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~l--t~~-~~~~~~~~SpDG~~ 188 (751)
...|+.++.+|+...+ ... .....+++++||+
T Consensus 124 --------------------------------------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~- 158 (300)
T 2qc5_A 124 --------------------------------------------GDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA- 158 (300)
T ss_dssp --------------------------------------------TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred --------------------------------------------CCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-
Confidence 1467888887755433 212 5567889999998
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|++.... ...|++++.++. ...+. .+. ....+..+.++++|+ |+++..
T Consensus 159 l~v~~~~------------~~~i~~~~~~g~-~~~~~-~~~----------~~~~~~~i~~d~~g~--l~v~~~------ 206 (300)
T 2qc5_A 159 LWFTENQ------------NNSIGRITNTGK-LEEYP-LPT----------NAAAPVGITSGNDGA--LWFVEI------ 206 (300)
T ss_dssp EEEEETT------------TTEEEEECTTCC-EEEEE-CSS----------TTCCEEEEEECTTSS--EEEEET------
T ss_pred EEEEecC------------CCeEEEECCCCc-EEEee-CCC----------CCCCcceEEECCCCC--EEEEcc------
Confidence 6665432 235888888433 33321 111 112345788999985 555431
Q ss_pred ccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
..+.|++++.+ + ...... ....... +.++++|+ |+++.. ....|++++.++
T Consensus 207 -----~~~~i~~~~~~---g-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~~~~i~~~~~~g 260 (300)
T 2qc5_A 207 -----MGNKIGRITTT---G-EISEYDIPTPNARPHAITAGKNSE-IWFTEW---GANQIGRITNDN 260 (300)
T ss_dssp -----TTTEEEEECTT---C-CEEEEECSSTTCCEEEEEECSTTC-EEEEET---TTTEEEEECTTS
T ss_pred -----CCCEEEEEcCC---C-cEEEEECCCCCCCceEEEECCCCC-EEEecc---CCCeEEEECCCC
Confidence 12467777763 2 222221 1122344 78899988 554441 235788888844
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-05 Score=79.02 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCcEEEEEeChHHHHHHHHHHh-------------------CC------CceeEEEEccCCC
Q 004475 600 PSRIAVGGHSYGAFMTAHLLAH-------------------AP------HLFCCGIARSGSY 636 (751)
Q Consensus 600 ~~~i~l~G~S~GG~~a~~~a~~-------------------~p------~~~~~~v~~~~~~ 636 (751)
..++.|+||||||.++..++.+ +| ++++.+|++++..
T Consensus 103 ~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 103 GGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPH 164 (387)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCT
T ss_pred CCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccceeEEEEECCCC
Confidence 4689999999999999999872 35 6899999988753
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0033 Score=63.44 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=79.7
Q ss_pred EEEEEcCC-CCceecCCC------ceEEeeeeCC-CCceEEEEEecCCccc-----ccccCCCceeEEEEeCCCceeeee
Q 004475 158 QLVLGSLD-GTAKDFGTP------AVYTAVEPSP-DQKYVLITSMHRPYSY-----KVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 158 ~l~~~~~~-G~~~~lt~~------~~~~~~~~Sp-DG~~i~~~~~~~~~~~-----~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
.|++++.+ |+.+.+... .....+++.| ||+ |+++........ ..........|++++.++++.+.+
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 36777774 444444221 2345789999 885 666543211000 000011235799999987765543
Q ss_pred ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-E
Q 004475 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-V 303 (751)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~ 303 (751)
... ......++|+|||+. |+++.. ....|++++++....+..+.+....+ .. +
T Consensus 181 ~~~-------------~~~p~gia~~~dg~~-lyv~d~-----------~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 181 LKE-------------LHVPGGAEVSADSSF-VLVAEF-----------LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp EEE-------------ESCCCEEEECTTSSE-EEEEEG-----------GGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred ccC-------------CccCcceEECCCCCE-EEEEeC-----------CCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 211 012347899999997 676542 23578888875211122333333333 44 8
Q ss_pred EEecCCceEEEeeeec-------ccceeEEEecCCC
Q 004475 304 SWCDDSLALVNETWYK-------TSQTRTWLVCPGS 332 (751)
Q Consensus 304 ~~spdg~~l~~~~~~~-------~~~~~l~~~~~~~ 332 (751)
.++++|+ |+.+.... .....|++++.++
T Consensus 235 ~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 235 KRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred EECCCCC-EEEEecCcccccccCCCccEEEEECCCC
Confidence 8899997 44443220 1135788888865
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=79.65 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=31.9
Q ss_pred CcEEEEEeChHHHHHHHHHHh--------------------------CCCceeEEEEccCCC
Q 004475 601 SRIAVGGHSYGAFMTAHLLAH--------------------------APHLFCCGIARSGSY 636 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~--------------------------~p~~~~~~v~~~~~~ 636 (751)
.++.|+||||||.+|..++.. +|+++.++|++++..
T Consensus 151 ~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i~tP~ 212 (431)
T 2hih_A 151 HPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTIATPH 212 (431)
T ss_dssp BCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEESCCT
T ss_pred CCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEECCCC
Confidence 689999999999999998876 688999999998764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0012 Score=62.99 Aligned_cols=205 Identities=8% Similarity=-0.033 Sum_probs=112.6
Q ss_pred EEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCce
Q 004475 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (751)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~ 256 (751)
.+.+.|+ || .|+.+..... .+.|.++|+++++...-...+. ........++|++
T Consensus 45 tqGL~~~-~~-~LyestG~~g----------~S~v~~vD~~Tgkv~~~~~l~~-------------~~FgeGit~~g~~- 98 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNG----------RSSIRKVDIESGKTLQQIELGK-------------RYFGEGISDWKDK- 98 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETT----------EEEEEEECTTTCCEEEEEECCT-------------TCCEEEEEEETTE-
T ss_pred cceEEEE-CC-EEEEECCCCC----------CceEEEEECCCCcEEEEEecCC-------------ccceeEEEEeCCE-
Confidence 4578888 65 6666543321 3578899999876543322211 1123345667887
Q ss_pred EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCC
Q 004475 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 335 (751)
Q Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 335 (751)
|+.+. +..+.++++|.+. ......+.-. .. ...++||+.|+.+. +...|+.+|+.+. .
T Consensus 99 ly~lt-----------w~~~~v~v~D~~t--~~~~~ti~~~---~eG~glt~dg~~L~~Sd----Gs~~i~~iDp~T~-~ 157 (262)
T 3nol_A 99 IVGLT-----------WKNGLGFVWNIRN--LRQVRSFNYD---GEGWGLTHNDQYLIMSD----GTPVLRFLDPESL-T 157 (262)
T ss_dssp EEEEE-----------SSSSEEEEEETTT--CCEEEEEECS---SCCCCEEECSSCEEECC----SSSEEEEECTTTC-S
T ss_pred EEEEE-----------eeCCEEEEEECcc--CcEEEEEECC---CCceEEecCCCEEEEEC----CCCeEEEEcCCCC-e
Confidence 66643 1336899999852 1222222221 12 35568898877654 2468999999885 1
Q ss_pred cceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 336 APRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 336 ~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
....+.-. ....+. ..+.+.|. ||+ |+...+ ....|.++|.++|+....+...+
T Consensus 158 v~~~I~V~~~g~~~~---~lNELe~~-~G~-lyan~w--------------------~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 158 PVRTITVTAHGEELP---ELNELEWV-DGE-IFANVW--------------------QTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EEEEEECEETTEECC---CEEEEEEE-TTE-EEEEET--------------------TSSEEEEECTTTCBEEEEEECTT
T ss_pred EEEEEEeccCCcccc---ccceeEEE-CCE-EEEEEc--------------------cCCeEEEEECCCCcEEEEEECCc
Confidence 11222111 001100 00014455 674 555442 23479999999999877766532
Q ss_pred hhhhhce---eeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 415 EKYFETA---VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 415 ~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
..... .......+.++++|++++|+++...+. .+|.+.+
T Consensus 213 --L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp---~~~ev~~ 254 (262)
T 3nol_A 213 --ILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP---KVFEITL 254 (262)
T ss_dssp --GGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS---EEEEEEE
T ss_pred --CccccccccCcCCceEEEEEcCCCCEEEEECCCCC---ceEEEEE
Confidence 11000 011122356899999999999876654 4565544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0036 Score=59.95 Aligned_cols=180 Identities=9% Similarity=0.076 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCc-eecC-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce-eeeeccCCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~ 232 (751)
..|+.+|++|+. +++. .. .+...+++.++|++ +++... ...+++++++... ...+......
T Consensus 49 ~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~-~vs~E~------------~~~l~~~~v~~~~~i~~~~~~~~~-- 113 (255)
T 3qqz_A 49 AAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQF-VISDER------------DYAIYVISLTPNSEVKILKKIKIP-- 113 (255)
T ss_dssp EEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEE-EEEETT------------TTEEEEEEECTTCCEEEEEEEECC--
T ss_pred CeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEE-EEEECC------------CCcEEEEEcCCCCeeeeeeeeccc--
Confidence 589999998843 3332 22 67888999999964 343222 2457777665322 1211111100
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------eceeEE-EE
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------LDLRFS-VS 304 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~~~-~~ 304 (751)
......+.+.-+++|+|++++ ++.+...+ ...||.++-- ..+...+.+.. .-...+ ++
T Consensus 114 --~~~~~~N~g~EGLA~d~~~~~-L~va~E~~----------p~~i~~~~g~-~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 114 --LQESPTNCGFEGLAYSRQDHT-FWFFKEKN----------PIEVYKVNGL-LSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp --CSSCCCSSCCEEEEEETTTTE-EEEEEESS----------SEEEEEEEST-TCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred --cccccccCCcceEEEeCCCCE-EEEEECcC----------CceEEEEccc-ccCCceeeecchhhccccccCCceeEE
Confidence 000112344568999999998 55544221 1256666510 00112222211 112345 88
Q ss_pred EecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccccccc-CCCCCCCeeeCCCCCEEEEee
Q 004475 305 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY-SDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 305 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~spDG~~l~~~~ 370 (751)
+.|....|+..+. ....|..+|.++.......|.. ...... ..+..--+++.++|+ |+..+
T Consensus 180 ~dp~tg~lliLS~---~s~~L~~~d~~g~~~~~~~L~~-g~~~l~~~~~qpEGia~d~~G~-lyIvs 241 (255)
T 3qqz_A 180 FNQQKNTLLVLSH---ESRALQEVTLVGEVIGEMSLTK-GSRGLSHNIKQAEGVAMDASGN-IYIVS 241 (255)
T ss_dssp EETTTTEEEEEET---TTTEEEEECTTCCEEEEEECST-TGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred EcCCCCeEEEEEC---CCCeEEEEcCCCCEEEEEEcCC-ccCCcccccCCCCeeEECCCCC-EEEEc
Confidence 8898888777662 3457888998873111111221 111110 011111278999996 55555
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0052 Score=58.89 Aligned_cols=214 Identities=9% Similarity=0.043 Sum_probs=114.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|.||++.|+...+. ...|+.+|++++..+.+.- .+. ...-++++.++|.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~------------~~~I~~ld~~g~v~~~i~l-~g~-----------~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK------------PAAIVEMTTNGDLIRTIPL-DFV-----------KDLETIEYIGDNQ 82 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET------------TEEEEEEETTCCEEEEEEC-SSC-----------SSEEEEEECSTTE
T ss_pred cCcceeEEeCCCCEEEEEECC------------CCeEEEEeCCCCEEEEEec-CCC-----------CChHHeEEeCCCE
Confidence 568899999999988887655 4579999999665555421 111 1122678887775
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCC--CceEeE------eeceeEE-EEEecCCceEEEeeeecccceeE
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILH------KLDLRFS-VSWCDDSLALVNETWYKTSQTRT 325 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~------~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l 325 (751)
. ++++ + .+..|+++++... +. ....+. ..+..+. ++|+|++++|+....+. ...|
T Consensus 83 ~--~vs~-E----------~~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--p~~i 146 (255)
T 3qqz_A 83 F--VISD-E----------RDYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--PIEV 146 (255)
T ss_dssp E--EEEE-T----------TTTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--SEEE
T ss_pred E--EEEE-C----------CCCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC--CceE
Confidence 3 3332 1 1246777766421 11 011111 1233346 99999999988876543 3478
Q ss_pred EEecC--CCCCCcceeeeecccc-cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 326 WLVCP--GSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 326 ~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
|.++. .+ ...+.+...... .... .....+++.|.-..|++.+. ....|..+|.+
T Consensus 147 ~~~~g~~~~--~~l~i~~~~~~~~~~~~-~d~S~l~~dp~tg~lliLS~--------------------~s~~L~~~d~~ 203 (255)
T 3qqz_A 147 YKVNGLLSS--NELHISKDKALQRQFTL-DDVSGAEFNQQKNTLLVLSH--------------------ESRALQEVTLV 203 (255)
T ss_dssp EEEESTTCS--SCCEEEECHHHHHTCCS-SCCCEEEEETTTTEEEEEET--------------------TTTEEEEECTT
T ss_pred EEEcccccC--Cceeeecchhhcccccc-CCceeEEEcCCCCeEEEEEC--------------------CCCeEEEEcCC
Confidence 88872 11 111222110000 0000 01112667777666666662 34578888886
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
|+.......... ..........+..++++++|+ |+.+ +. |-.+|++...
T Consensus 204 -g~~~~~~~L~~g--~~~l~~~~~qpEGia~d~~G~-lyIv-sE---~n~~y~f~~~ 252 (255)
T 3qqz_A 204 -GEVIGEMSLTKG--SRGLSHNIKQAEGVAMDASGN-IYIV-SE---PNRFYRFTPQ 252 (255)
T ss_dssp -CCEEEEEECSTT--GGGCSSCCCSEEEEEECTTCC-EEEE-ET---TTEEEEEEC-
T ss_pred -CCEEEEEEcCCc--cCCcccccCCCCeeEECCCCC-EEEE-cC---CceEEEEEec
Confidence 445444443321 001111133455689999997 4444 33 3468877644
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0032 Score=66.33 Aligned_cols=136 Identities=7% Similarity=-0.038 Sum_probs=80.6
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee--eeeccCCCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~ 232 (751)
..|.++++++ ..+.+... .....++|++||++|+++..... .....++.++.++.-. +.+..
T Consensus 159 ~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~--------~~~~~v~~~~~~g~~~~~~~l~~------ 224 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN--------NDRPNNYILTRESGFKVITELTK------ 224 (430)
T ss_dssp EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC--------TTSEEEEEEEGGGTSCSEEEEEE------
T ss_pred CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC--------cccceEEEEeCCCceeeeeeecc------
Confidence 3688889855 55555444 55778999999999988754321 1122355555554321 12211
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec--eeEE-EEEecCC
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFS-VSWCDDS 309 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~-~~~spdg 309 (751)
......++++|++.. |+++.. ..++|++++.+ +.....+.... .... ++|+|+|
T Consensus 225 --------~~~p~giavdp~~g~-lyv~d~-----------~~~~V~~~~~~---~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 225 --------GQNCNGAETHPINGE-LYFNSW-----------NAGQVFRYDFT---TQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp --------CSSCCCEEECTTTCC-EEEEET-----------TTTEEEEEETT---TTEEEEEEECSSSSCCEEEEECTTS
T ss_pred --------CCCceEEEEeCCCCE-EEEEEC-----------CCCEEEEEECC---CCcEEEEEEcCCCCcceeEEEcCCC
Confidence 122447899995555 777541 23578998875 33332333221 1233 8999999
Q ss_pred ceEEEeeeecccceeEEEecCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++|++.. .....|++++.++
T Consensus 282 ~~lyv~d---~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 282 NYAYIVV---VNQHYILRSDYDW 301 (430)
T ss_dssp SEEEEEE---TTTTEEEEEEEET
T ss_pred CEEEEEE---CCCCEEEEEeCCc
Confidence 9887765 2345788877664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0054 Score=64.61 Aligned_cols=157 Identities=10% Similarity=0.043 Sum_probs=91.5
Q ss_pred ccceeecCC--CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPD--G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
....+|+|| +..|+++. .. ..|+++++++++.+.+..... ....++|+|||+ |+++......
T Consensus 141 P~gvavd~~s~~g~Lyv~D---------~~-~~I~~id~~~g~v~~~~~~~~-----~P~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVG---------QR-DAFRHVDFVNQYVDIKTTNIG-----QCADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCEEEECTTTTTCEEEEEC---------BT-SCEEEEETTTTEEEEECCCCS-----CEEEEEECTTCC-EEEEECCSCT
T ss_pred CceEEEccccCCCEEEEEe---------CC-CCEEEEECCCCEEEEeecCCC-----CccEEEECCCCC-EEEEcCCCCc
Confidence 456789995 55665542 11 789999998888777654222 246889999999 7776332100
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCCCc---eecCCCceEEeeeeCCCCc
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA---KDFGTPAVYTAVEPSPDQK 187 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~---~~lt~~~~~~~~~~SpDG~ 187 (751)
. ...++.++.++.. ..+........++++|++.
T Consensus 205 ~--------------------------------------------~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G 240 (433)
T 4hw6_A 205 T--------------------------------------------NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNG 240 (433)
T ss_dssp T--------------------------------------------SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTC
T ss_pred c--------------------------------------------cceEEEEECCCCeeccccccccCCCCEEEEeCCCC
Confidence 0 0234444443311 1222113345688999666
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
.|++.... ...|++++.+++.. +.+...... .....++|+|||++ ||++..
T Consensus 241 ~lyv~d~~------------~~~V~~~d~~~g~~~~~~~~~~~~-----------~~~~~ia~dpdG~~-LYvad~---- 292 (433)
T 4hw6_A 241 KIYYTRYH------------HAMISSYDPATGTLTEEEVMMDTK-----------GSNFHIVWHPTGDW-AYIIYN---- 292 (433)
T ss_dssp CEEECBTT------------CSEEEEECTTTCCEEEEEEECSCC-----------SSCEEEEECTTSSE-EEEEET----
T ss_pred eEEEEECC------------CCEEEEEECCCCeEEEEEeccCCC-----------CCcccEEEeCCCCE-EEEEeC----
Confidence 78776432 34689999986654 333211110 11125899999998 777541
Q ss_pred CCccccCcccceeeccCC
Q 004475 267 DANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~ 284 (751)
....|++++.+
T Consensus 293 -------~~~~I~~~~~d 303 (433)
T 4hw6_A 293 -------GKHCIYRVDYN 303 (433)
T ss_dssp -------TTTEEEEEEBC
T ss_pred -------CCCEEEEEeCC
Confidence 23467776654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0081 Score=60.55 Aligned_cols=129 Identities=8% Similarity=0.001 Sum_probs=69.7
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeec-CCC
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKP 254 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~sp-dG~ 254 (751)
....+++++++..|++.... ..+++++.+++..+.+...... . .......+++.| +|+
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~-------------~~i~~~d~~~g~~~~~~~~~~~--~------~~~~p~~i~~d~~~G~ 139 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCY-------------YHLSVVGSEGGHATQLATSVDG--V------PFKWLYAVTVDQRTGI 139 (322)
T ss_dssp CEEEEEEETTTTEEEEEETT-------------TEEEEECTTCEECEEEESEETT--E------ECSCEEEEEECTTTCC
T ss_pred CCceEEEcCCCCcEEEEECC-------------CCEEEEeCCCCEEEEecccCCC--C------cccccceEEEecCCCE
Confidence 35678888843456665322 2378888887765554321100 0 001234789999 885
Q ss_pred ceEEEEEeccCCCCc------cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 255 STLYWVEAQDRGDAN------VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
|+++......... ......+.|++++.+ ++....+........ ++|+|||+.|+++.. ...+|++
T Consensus 140 --l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~---~~~~I~~ 211 (322)
T 2fp8_A 140 --VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---TKETTLLLKELHVPGGAEVSADSSFVLVAEF---LSHQIVK 211 (322)
T ss_dssp --EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT---TTEEEEEEEEESCCCEEEECTTSSEEEEEEG---GGTEEEE
T ss_pred --EEEECCcccccccccceehcccCCCceEEEEeCC---CCEEEEeccCCccCcceEECCCCCEEEEEeC---CCCeEEE
Confidence 6665422110000 000123578888864 333333322212223 789999998877652 2357888
Q ss_pred ecCCCC
Q 004475 328 VCPGSK 333 (751)
Q Consensus 328 ~~~~~~ 333 (751)
+++++.
T Consensus 212 ~~~~~~ 217 (322)
T 2fp8_A 212 YWLEGP 217 (322)
T ss_dssp EESSST
T ss_pred EECCCC
Confidence 888763
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0071 Score=63.88 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=96.5
Q ss_pred cceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEE-------ecCCcEEEEee
Q 004475 34 NFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-------VNNSTLLIFTI 105 (751)
Q Consensus 34 ~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~w-------spDg~~l~~~~ 105 (751)
...+++| |+..|+.+. .....|+++|++++..+.+.......++ ....++| +++|++|++..
T Consensus 142 ~~la~dp~~~~~Lyv~~---------~~~~~i~~ID~~~~~v~~l~~~~~~~~~-~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICY---------DGHKAIQLIDLKNRMLSSPLNINTIPTN-RIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp EEEEEETTEEEEEEEEE---------ETEEEEEEEETTTTEEEEEECCTTSSCS-BEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CEEEEccCCCCEEEEEE---------CCCCeEEEEECCCCEEEEEEccCccccC-CCcEEEEeecccccCCCCCEEEEEe
Confidence 4568899 466665543 2346799999999887776544321111 2467899 99999888874
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC--CCCc------eecCCCceE
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTA------KDFGTPAVY 177 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~G~~------~~lt~~~~~ 177 (751)
...... .....++.++. +|+. +.+......
T Consensus 212 ~~~~~~------------------------------------------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p 249 (496)
T 3kya_A 212 DYDGKG------------------------------------------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQC 249 (496)
T ss_dssp CCCTTG------------------------------------------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCC
T ss_pred CCCCCc------------------------------------------ccCceEEEEecCCCCceeecccceeeccCCCc
Confidence 432100 00124555544 3432 223211334
Q ss_pred EeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC-------Ccee------------eeeccCCCCCCCCCccC
Q 004475 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-------GKLV------------RELCDLPPAEDIPVCYN 238 (751)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~------------~~l~~~~~~~~~~~~~~ 238 (751)
..++.+|++++|+++... ...|+++|++ ++.. +++...+
T Consensus 250 ~giavdp~~g~LYvtd~~------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~---------- 307 (496)
T 3kya_A 250 NGATIHPINGELYFNSYE------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA---------- 307 (496)
T ss_dssp CCEEECTTTCCEEEEETT------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS----------
T ss_pred eEEEEcCCCCeEEEEECC------------CCEEEEEecccccccccCceeecccccccccccceeEecC----------
Confidence 567889999999987543 3468999987 4543 1111111
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE 284 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (751)
.....+.++|+|+|+. ||++.. ...+|+.++.+
T Consensus 308 -~~~~p~~ia~~p~G~~-lYvaD~-----------~~h~I~kid~d 340 (496)
T 3kya_A 308 -DPSWEFQIFIHPTGKY-AYFGVI-----------NNHYFMRSDYD 340 (496)
T ss_dssp -SSSCCEEEEECTTSSE-EEEEET-----------TTTEEEEEEEE
T ss_pred -CCCCceEEEEcCCCCE-EEEEeC-----------CCCEEEEEecC
Confidence 1122458999999997 666541 23467776654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0014 Score=66.89 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=55.3
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCc-----ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccC
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~ 79 (751)
..|+++|+.+ |+..+...++.. ......+++|++..++++... ......|+++++++++..++..
T Consensus 93 ~~i~~~d~~t----g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~------~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 93 PKLVAWDTLN----NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA------PDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CEEEEEETTT----TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC------SGGGCEEEEEETTTCCEEEECT
T ss_pred CeEEEEECCC----CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc------cCCCCeEEEEECCCCCEEEEec
Confidence 4788899888 874332223221 134678899987666553210 0145789999998887666432
Q ss_pred CC-C------------cc------------ccceeeeeEEecCCcEEEEeec
Q 004475 80 SP-D------------IC------------LNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 80 ~~-~------------~~------------~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.. . .. +......++|||||+.|++...
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 20 0 00 0012457899999999988743
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.029 Score=57.18 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=63.5
Q ss_pred ceEEeeeeCCC---CceEEEEEecCCcccccccCCCceeEEEEeCCCce---eeee-ccCCCCCCCCCccCCccCCCcee
Q 004475 175 AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL---VREL-CDLPPAEDIPVCYNSVREGMRSI 247 (751)
Q Consensus 175 ~~~~~~~~SpD---G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 247 (751)
.....++++|| +++|++....... .....|++++.+++. .+.+ ...+.. .........+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~-------~~~~~v~r~~~~~~~~~~~~~l~~~~p~~-------~~~~h~~~~l 140 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEG-------GLRNQVVRLRHLGERGVLDRVVLDGIPAR-------PHGLHSGGRI 140 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTT-------SSEEEEEEEEECSSCEEEEEEEEEEECCC-------TTCCCCCCCE
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCC-------CCccEEEEEEeCCCCcCceEEEEEeCCCC-------CCCCcCCceE
Confidence 46678999999 7788776543210 112568888877542 2222 112210 0011234589
Q ss_pred eeecCCCceEEEEEeccCCCCcc---ccCcccceeeccCCCCCC-------------CCceEeEeeceeEE-EEEecCCc
Q 004475 248 SWRADKPSTLYWVEAQDRGDANV---EVSPRDIIYTQPAEPAEG-------------EKPEILHKLDLRFS-VSWCDDSL 310 (751)
Q Consensus 248 ~~spdG~~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-------------~~~~~l~~~~~~~~-~~~spdg~ 310 (751)
+|+||| + ||++... .+.... .....+.|++++.+ + ...+.....-.... ++|+|+..
T Consensus 141 ~~~pdG-~-Lyv~~G~-~~~~~~~~d~~~~~g~I~ri~~d---G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g 214 (352)
T 2ism_A 141 AFGPDG-M-LYVTTGE-VYERELAQDLASLGGKILRLTPE---GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTG 214 (352)
T ss_dssp EECTTS-C-EEEECCC-TTCGGGGGCTTCSSSEEEEECTT---SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTC
T ss_pred EECCCC-C-EEEEECC-CCCCccccCCCCCceEEEEEcCC---CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCC
Confidence 999999 4 6665422 111100 01233688888875 3 12333333333334 88999544
Q ss_pred eEEEee
Q 004475 311 ALVNET 316 (751)
Q Consensus 311 ~l~~~~ 316 (751)
.|+.+.
T Consensus 215 ~l~v~d 220 (352)
T 2ism_A 215 ELFSSE 220 (352)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 455544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0058 Score=61.76 Aligned_cols=160 Identities=18% Similarity=0.057 Sum_probs=89.2
Q ss_pred eeEEeecCCCCCCCCcccccCCC---Ccc--cccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeecc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYP---DGA--KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~---~~~--~~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt 78 (751)
.|+++|+++ .+++.++|.... ... ......+.+ ||+.-.|+.+.. .......||.++.+++..+.+.
T Consensus 84 ~I~~~d~~~--~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 84 KILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp EEEEEETTS--SSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEecCC--CCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEECCCCEEEEEe
Confidence 599999875 335655554211 101 122333433 687666776522 1245578888888776666664
Q ss_pred CCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeE
Q 004475 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (751)
Q Consensus 79 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (751)
......++ ..+.++..+||. ++++....-.. ..+.. .. .+.....+.
T Consensus 158 ~~~g~~~~-~pND~~v~~~G~-fyvt~~~~ftd------------------------~~~~~------~e-~~~~~~~g~ 204 (355)
T 3sre_A 158 TIRHKLLP-SVNDIVAVGPEH-FYATNDHYFID------------------------PYLKS------WE-MHLGLAWSF 204 (355)
T ss_dssp EECCTTCS-SEEEEEEEETTE-EEEEESCSCSS------------------------HHHHH------HH-HHTTCCCEE
T ss_pred ccccCCCC-CCceEEEeCCCC-EEecCCcEeCC------------------------ccccc------ch-hhccCCccE
Confidence 44433333 356888999996 44442210000 00000 00 000012368
Q ss_pred EEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC
Q 004475 159 LVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (751)
Q Consensus 159 l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (751)
||.++. ++.+.+... .....++|||||++|+++... ...|++++.+
T Consensus 205 vyr~d~-~~~~~~~~~l~~pNGia~spDg~~lYvadt~------------~~~I~~~~~~ 251 (355)
T 3sre_A 205 VTYYSP-NDVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYEKH 251 (355)
T ss_dssp EEEECT-TCCEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEEC
T ss_pred EEEEEC-CeEEEeecCCcccCcceECCCCCEEEEEeCC------------CCeEEEEEEC
Confidence 999887 455555444 455689999999999997543 3468888875
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.021 Score=58.20 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCceecC------CC-ceEEeeeeCCC---CceEEEEEec-CCcccccccCCCceeEEEEeCCCc-----e
Q 004475 157 AQLVLGSLDGTAKDFG------TP-AVYTAVEPSPD---QKYVLITSMH-RPYSYKVPCARFSQKVQVWTTDGK-----L 220 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt------~~-~~~~~~~~SpD---G~~i~~~~~~-~~~~~~~~~~~~~~~l~~~d~~~~-----~ 220 (751)
..|++++.+|+ +.+. .. .....++++|| +.+|++.... ... ......|++++.++. .
T Consensus 49 g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~------~~~~~~v~r~~~~~~~~~~~~ 121 (354)
T 3a9g_A 49 GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG------GHIRNRVIRGRLDGSTFKLKE 121 (354)
T ss_dssp TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG------GCEEEEEEEEEECSSSCCEEE
T ss_pred CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC------CCcceEEEEEEECCCCcCcCc
Confidence 36777766665 3321 12 45678999998 7777776432 100 001246888887654 1
Q ss_pred eeee-ccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcc---ccCcccceeeccCCCCCCC-------
Q 004475 221 VREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV---EVSPRDIIYTQPAEPAEGE------- 289 (751)
Q Consensus 221 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~------- 289 (751)
.+.+ ...+. ........+.|.|||+ ||++... .+.... .....+.|++++.+ +.
T Consensus 122 ~~~l~~~~~~---------~~~h~~~~l~~~pDG~--Lyvt~G~-~~~~~~~~d~~~~~G~I~ri~~d---G~~p~~npf 186 (354)
T 3a9g_A 122 VKTLIDGIPG---------AYIHNGGRIRFGPDGM--LYITTGD-AADPRLAQDLSSLAGKILRVDEE---GRPPADNPF 186 (354)
T ss_dssp EEEEEEEEEC---------CSSCCCCCEEECTTSC--EEEECCC-TTCGGGGTCTTCCSSEEEEECTT---SCCCTTSSS
T ss_pred cEEEEEcCCC---------CCCcCCceEEECCCCc--EEEEECC-CCCCccccCCCCCCeEEEEEcCC---CCCCCCCCC
Confidence 2222 11110 1112345799999995 6665322 111100 11234688998875 33
Q ss_pred -CceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecC
Q 004475 290 -KPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCP 330 (751)
Q Consensus 290 -~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~ 330 (751)
..+.....-.... ++|+|+...|+++........+|.++..
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 1233333322333 8899954446555433223345666543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.011 Score=55.83 Aligned_cols=207 Identities=6% Similarity=-0.070 Sum_probs=112.2
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
-.+.+.|++ .+|+.+..... .+.|..+|+++++..+-...+.. .......++|++
T Consensus 22 ftqGL~~~~--~~LyestG~~g----------~S~v~~vD~~tgkv~~~~~l~~~-------------~fgeGi~~~~~~ 76 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETG----------RSSVRKVDLETGRILQRAEVPPP-------------YFGAGIVAWRDR 76 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTT----------SCEEEEEETTTCCEEEEEECCTT-------------CCEEEEEEETTE
T ss_pred ccccEEEEC--CEEEEECCCCC----------CceEEEEECCCCCEEEEEeCCCC-------------cceeEEEEeCCE
Confidence 345778874 56766543311 35789999998866543222211 123345566777
Q ss_pred eEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCC
Q 004475 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 334 (751)
Q Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 334 (751)
|+.+. +..+.++++|.+ ..+.+......-. ...++|++.|+.+. +...|+.+|+.+.
T Consensus 77 -ly~lt-----------w~~~~v~v~D~~-----tl~~~~ti~~~~~Gwglt~dg~~L~vSd----gs~~l~~iDp~t~- 134 (243)
T 3mbr_X 77 -LIQLT-----------WRNHEGFVYDLA-----TLTPRARFRYPGEGWALTSDDSHLYMSD----GTAVIRKLDPDTL- 134 (243)
T ss_dssp -EEEEE-----------SSSSEEEEEETT-----TTEEEEEEECSSCCCEEEECSSCEEEEC----SSSEEEEECTTTC-
T ss_pred -EEEEE-----------eeCCEEEEEECC-----cCcEEEEEeCCCCceEEeeCCCEEEEEC----CCCeEEEEeCCCC-
Confidence 55543 133689999975 2223322221112 35568898877653 2458999999885
Q ss_pred Ccceeeeec-ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 335 VAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 335 ~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
.....+.-. ....+. ..+.+.|. +|+ |+...+ ....|.++|.++|+....+...
T Consensus 135 ~~~~~I~V~~~g~~~~---~lNeLe~~-~G~-lyanvw--------------------~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 135 QQVGSIKVTAGGRPLD---NLNELEWV-NGE-LLANVW--------------------LTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp CEEEEEECEETTEECC---CEEEEEEE-TTE-EEEEET--------------------TTTEEEEECTTTCBEEEEEECG
T ss_pred eEEEEEEEccCCcccc---cceeeEEe-CCE-EEEEEC--------------------CCCeEEEEECCCCCEEEEEECC
Confidence 211222111 100000 00012233 664 544442 2347999999999987766543
Q ss_pred chhhhhcee----eeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 414 REKYFETAV----ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 414 ~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
+ ...... ......+.++++|++++|+++...+ +.+|.+.+.
T Consensus 190 ~--l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 190 A--LVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp G--GSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC---SEEEEEEEC
T ss_pred c--CccccccccCCcCCceEEEEEcCCCCEEEEECCCC---CcEEEEEEe
Confidence 2 000000 0111235589999999999887554 457776653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0036 Score=59.65 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=99.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCCc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~~ 83 (751)
+.|.++|+.+ |+..+-..++. ....-.++++|++|+.+. .....++++|+++.+. .++....
T Consensus 65 S~v~~vD~~T----gkv~~~~~l~~--~~FgeGit~~g~~ly~lt---------w~~~~v~v~D~~t~~~~~ti~~~~-- 127 (262)
T 3nol_A 65 SSIRKVDIES----GKTLQQIELGK--RYFGEGISDWKDKIVGLT---------WKNGLGFVWNIRNLRQVRSFNYDG-- 127 (262)
T ss_dssp EEEEEECTTT----CCEEEEEECCT--TCCEEEEEEETTEEEEEE---------SSSSEEEEEETTTCCEEEEEECSS--
T ss_pred ceEEEEECCC----CcEEEEEecCC--ccceeEEEEeCCEEEEEE---------eeCCEEEEEECccCcEEEEEECCC--
Confidence 4688889988 98876544443 233445778898886543 4558999999998774 3443222
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....++||++|+.+. +...|+.+|
T Consensus 128 ------eG~glt~dg~~L~~Sd-------------------------------------------------Gs~~i~~iD 152 (262)
T 3nol_A 128 ------EGWGLTHNDQYLIMSD-------------------------------------------------GTPVLRFLD 152 (262)
T ss_dssp ------CCCCEEECSSCEEECC-------------------------------------------------SSSEEEEEC
T ss_pred ------CceEEecCCCEEEEEC-------------------------------------------------CCCeEEEEc
Confidence 1224567998887651 114788888
Q ss_pred C-CCCc-eec--CCC----ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC-CCCCCC
Q 004475 164 L-DGTA-KDF--GTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PAEDIP 234 (751)
Q Consensus 164 ~-~G~~-~~l--t~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~ 234 (751)
. +.+. .++ +.. ..+.++.|. ||+ |++..-. ...|.++|++++++....+.. +....
T Consensus 153 p~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~------------~~~I~vIDp~tG~V~~~Id~~~L~~~~- 217 (262)
T 3nol_A 153 PESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQ------------TNKIVRIDPETGKVTGIIDLNGILAEA- 217 (262)
T ss_dssp TTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT------------SSEEEEECTTTCBEEEEEECTTGGGGS-
T ss_pred CCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEcc------------CCeEEEEECCCCcEEEEEECCcCcccc-
Confidence 8 5532 232 211 223356776 774 6654321 457999999988765443332 11000
Q ss_pred CccCCccCCCceeeeecCCCceEEEEE
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
...........+++|+|++++ ++.+.
T Consensus 218 ~~~~~~~~vlNGIA~dp~~~~-lfVTG 243 (262)
T 3nol_A 218 GPLPSPIDVLNGIAWDKEHHR-LFVTG 243 (262)
T ss_dssp CSCCSSCCCEEEEEEETTTTE-EEEEE
T ss_pred ccccCcCCceEEEEEcCCCCE-EEEEC
Confidence 000111123458999999998 66653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 751 | ||||
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 3e-18 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 8e-17 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 5e-16 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 8e-15 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 5e-14 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 3e-13 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 5e-12 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 2e-11 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 5e-11 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 8e-11 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 9e-11 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 2e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 3e-09 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 4e-09 | |
| d1pv1a_ | 299 | c.69.1.34 (A:) Hypothetical esterase YJL068C {Bake | 3e-08 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 4e-08 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 8e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 9e-07 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 9e-06 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 1e-05 | |
| d1uxoa_ | 186 | c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus | 4e-05 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 2e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 3e-04 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 3e-04 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 4e-04 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 0.001 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 0.001 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 0.002 |
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 84.0 bits (206), Expect = 3e-18
Identities = 37/290 (12%), Positives = 79/290 (27%), Gaps = 34/290 (11%)
Query: 470 PHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW--------AYPE 521
L +++ + + G + L +P ++ LPC+ +P
Sbjct: 45 RMESH-LKTVEAYDVTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPH 99
Query: 522 DYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQL 581
D+ + G + + + + + G P + ++
Sbjct: 100 DWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRV 159
Query: 582 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN---- 637
+ A AVE D RI + G S G + + A + +
Sbjct: 160 FTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRA 219
Query: 638 KTLTPFGFQTEFR--------TLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF 689
L E + A + K P L G +D+
Sbjct: 220 VQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNIC--P 277
Query: 690 PMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
P ++ G + + P+ +H + + ++L+K
Sbjct: 278 PSTVFAAYNYYAGP---KEIRIYPYNNHEGGGSFQAVEQV----KFLKKL 320
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.0 bits (193), Expect = 8e-17
Identities = 37/258 (14%), Positives = 75/258 (29%), Gaps = 21/258 (8%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
D L + P + + P L + +F +++
Sbjct: 11 DDYNLPMQILKPATFTDTT--HYPLLLVVDG--------TPGSQSVAEKFEVSWE--TVM 58
Query: 550 FLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVG 606
+ V+ +G KL ++ R AV +++ D +R+AV
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 607 GHSYGAFMTAHLLAHAP----HLFCCGIARSG-SYNKTLTPFGFQTEFRTLWEATNVYIE 661
G YG +++ ++L F CG A S + K + Y
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA 721
+ +++ +I D+ + L A L + P E H + +
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEK-IHFQHTAELITQLIRGKANYSLQIYPDESHYFTS 237
Query: 722 RENVMHVIWETDRWLQKY 739
H+ + +
Sbjct: 238 SSLKQHLYRSIINFFVEC 255
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 77.4 bits (190), Expect = 5e-16
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--------SYNKTLTPFGFQTEF 649
+P+ ++V G + G +M A L +F G + T +
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSI 67
Query: 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG--HGALS 707
T + + AN ++ I + G D VG P + L + A
Sbjct: 68 TTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANV 125
Query: 708 RLVLLPFEHHVY 719
V H +
Sbjct: 126 SYVTTTGAVHTF 137
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 73.1 bits (178), Expect = 8e-15
Identities = 28/258 (10%), Positives = 57/258 (22%), Gaps = 22/258 (8%)
Query: 482 EMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPE---DYKSKDAAGQV-RGSP 536
+ DG +P + P L+ D + Q+ +P
Sbjct: 14 SATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDRLDDELLKQLSEKTP 71
Query: 537 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG-----DKLPNDRFVEQLVSSAEAAVEE 591
+ ++L F A P+ + +
Sbjct: 72 PVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPK 131
Query: 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRT 651
V + D R + GHSYG + + + S S + +
Sbjct: 132 VEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSY-YSASPSLGRGYDALLSRVTAVE 190
Query: 652 LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 711
+ ++ + + E + LK G +
Sbjct: 191 PLQFCTKHLAIM-------EGSATQGDNRETHAVG--VLSKIHTTLTILKDKGVNAVFWD 241
Query: 712 LPFEHHVYAARENVMHVI 729
P H + +
Sbjct: 242 FPNLGHGPMFNASFRQAL 259
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 70.6 bits (171), Expect = 5e-14
Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 23/266 (8%)
Query: 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS 540
+ + + + + LPP +D+SK P L Y A + + F
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVY--------AGPCSQKADTVFR 52
Query: 541 GMTPTSSLIFLARRFAVLAGPSIPIIGEG----DKLPNDRFVEQLVSSAEAAVEEVVRRG 596
T + ++A G N R V A + + G
Sbjct: 53 LNWAT---YLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 109
Query: 597 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEAT 656
D RIA+ G SYG ++T+ +L +F CGIA + + + L
Sbjct: 110 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 169
Query: 657 NVYIEMSPITHANKIKK----PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
+ T ++ + L+IHG DD V Q+ + AL G + +
Sbjct: 170 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNV--HFQQSAQISKALVDVGVDFQAMWY 227
Query: 713 PFEHHVYAARENVMHVIWETDRWLQK 738
E H A+ H+ ++++
Sbjct: 228 TDEDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 68.7 bits (166), Expect = 3e-13
Identities = 27/270 (10%), Positives = 54/270 (20%), Gaps = 16/270 (5%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP----EDYKSKDAAGQVRGSPN 537
I Y KDG + + G DG P + Y + + +
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIK--LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHM 65
Query: 538 EFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGV 597
G D +
Sbjct: 66 GGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSN 125
Query: 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATN 657
F + G T + +
Sbjct: 126 GGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYS 185
Query: 658 VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE-- 715
+ + +L++ + DD+V P+ + +F L+ SR P
Sbjct: 186 PLHNVKLPEADDIQYPSMLLLTADHDDRV--VPLHSLKFIATLQYIVGRSRKQNNPLLIH 243
Query: 716 ------HHVYAARENVMHVIWETDRWLQKY 739
H V+ + + ++ +
Sbjct: 244 VDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 64.6 bits (156), Expect = 5e-12
Identities = 34/264 (12%), Positives = 64/264 (24%), Gaps = 31/264 (11%)
Query: 474 PTLASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQV 532
P + + I ++ + ++ P E + V
Sbjct: 8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWAQSMPVWPV 64
Query: 533 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592
S + P VL + N F + V+ +
Sbjct: 65 LTSLTHRQQLPPAV---------YVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVI 115
Query: 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTL 652
R V G S+G + H P F C +++SGSY
Sbjct: 116 APFSD-RADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG---------- 164
Query: 653 WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLL 712
+ V +E + I++ G + + + + L +
Sbjct: 165 GQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESIFWRQV 221
Query: 713 PFEHHVYAARENVMHVIWETDRWL 736
H R +M + L
Sbjct: 222 DGGHDALCWRGGLMQGL----IDL 241
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 63.3 bits (152), Expect = 2e-11
Identities = 34/269 (12%), Positives = 66/269 (24%), Gaps = 21/269 (7%)
Query: 469 FPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 528
+ +P P + K Y +G + +YLP GYD +K + +
Sbjct: 17 YLNPCPQAGRIVK--ETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI 71
Query: 529 AGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA 588
N L L G + + + + A
Sbjct: 72 FSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYA 131
Query: 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE 648
+ A GG + G T +++ + + SG Y +P
Sbjct: 132 ESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSP------ 185
Query: 649 FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGL------FPMQAERFFDALKG 702
+ N E + +K + + G D F
Sbjct: 186 ----QDKANSIAEAINRSGLSKREYFVFAATGSEDIAYANMNPQIEAMKALPHFDYTSDF 241
Query: 703 HGALSRLVLLPFEHHVYAARENVMHVIWE 731
++ P H + + ++
Sbjct: 242 SKGNFYFLVAPGATHWWGYVRHYIYDALP 270
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 62.7 bits (151), Expect = 5e-11
Identities = 44/261 (16%), Positives = 76/261 (29%), Gaps = 43/261 (16%)
Query: 490 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 549
DG+P+ + +P G GP P + + + E M +
Sbjct: 114 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMEN----L 153
Query: 550 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHS 609
L R A P GE + A V+ + + I V G S
Sbjct: 154 VLDRGMATAT-FDGPGQGEMFEYKRIA--GDYEKYTSAVVDLLTKLEAIRNDAIGVLGRS 210
Query: 610 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------TPFGFQTEFRTLWEA-TNVY 659
G A P I+ G + + + ++ TL EA +V+
Sbjct: 211 LGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVH 269
Query: 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV- 718
+ ++I P I+HG D+V + + + LV+ H
Sbjct: 270 AALETRDVLSQIACPTYILHGV-HDEVP--LSFVDTVLELVPAEHL--NLVVEKDGDHCC 324
Query: 719 YAARENVMHVIWETDRWLQKY 739
+ + + WL
Sbjct: 325 HNLGIRPRLEMAD---WLYDV 342
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 61.1 bits (146), Expect = 8e-11
Identities = 40/265 (15%), Positives = 78/265 (29%), Gaps = 27/265 (10%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
++ + DG + + P P + + G P
Sbjct: 13 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVLVH--------------GGPFAEDS 54
Query: 542 MTPTSSLIFLARRFAVLAGPSIPIIGE--GDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 599
+ + LA + P+ + + + R
Sbjct: 55 DSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGL 114
Query: 600 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG-----SYNKTLTPFGFQTEFRTLWE 654
S + + G+SYG +MT L P LF G+A + + +
Sbjct: 115 ASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGG 174
Query: 655 ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714
+ + SPI H ++IK+P+ +IH + D + R L G ++P
Sbjct: 175 SREIMRSRSPINHVDRIKEPLALIHPQNDSRT--PLKPLLRLMGELLARGKTFEAHIIPD 232
Query: 715 EHHVYAARENVMHVIWETDRWLQKY 739
H E+ + ++ +L
Sbjct: 233 AGHAINTMEDAVKILLPAVFFLATQ 257
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 61.7 bits (148), Expect = 9e-11
Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 32/286 (11%)
Query: 470 PHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAA 529
P YP ++ + Y+ +T +P +GP P + + +
Sbjct: 46 PVDYP-ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASYDGEI 99
Query: 530 GQVRG-SPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE-GDKLPNDRFVEQLVSSAEA 587
++ + + ++ + ++ G + + + A
Sbjct: 100 HEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVR 159
Query: 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG------------- 634
A+E + D +RI V G S G +T A +
Sbjct: 160 ALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVALE 219
Query: 635 -SYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693
Y + + F T +A + A+++K P+L+ G +D P
Sbjct: 220 QPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTP--PSTV 277
Query: 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
++ L+ L + + H Y E + ++
Sbjct: 278 FAAYNHLETKK---ELKVYRYFGHEYIP-----AFQTEKLAFFKQI 315
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 465 QITNFPHPYPTLAS-LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 523
IT P ++ K + +DGV L + LP G P + P D
Sbjct: 7 DITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDA 61
Query: 524 KSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP--------SIPIIGEGDKLPND 575
+ R + + +F+ + + ++ + P +
Sbjct: 62 ----SGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLN 117
Query: 576 RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635
+ A ++ +V+ ++ + G SY F L + + S
Sbjct: 118 PSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPM 177
Query: 636 YN 637
+
Sbjct: 178 ID 179
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 57.4 bits (137), Expect = 3e-09
Identities = 23/174 (13%), Positives = 43/174 (24%), Gaps = 16/174 (9%)
Query: 472 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ 531
P K + +DGV L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 532 VRGSPNEFSGMTPTSSLIFLARRFAVLA--------GPSIPIIGEGDKLPNDRFVEQLVS 583
+ + P +F+ + + ++ P + +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETT 130
Query: 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637
A V+ +V R+ + G SY F L S +
Sbjct: 131 DAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVD 184
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 56.9 bits (136), Expect = 4e-09
Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 53/211 (25%)
Query: 578 VEQLVSSAEAAVEEVVRRGVADP---SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634
++ L A A + ++A+ G SY M +A +G
Sbjct: 169 IDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAG 228
Query: 635 SYN----------------------------------------------KTLTPFGFQTE 648
+ +
Sbjct: 229 ISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAAL 288
Query: 649 FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708
R + + + + + + +K+K +LI+HG D V P QA F+ AL G
Sbjct: 289 DRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALP-EGHAKH 345
Query: 709 LVLLPFEHHVYAARENVMHVIWETDRWLQKY 739
L H Y + + +
Sbjct: 346 AFLHRGAHI-YMNSWQSIDFSETINAYFVAK 375
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (128), Expect = 3e-08
Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 25/238 (10%)
Query: 491 GVPLTATLYLPPGYDQ---SKDGPLPCLFW---------------AYPEDYKSKDAAGQV 532
+ +YLP Y ++ +P +F+ + A
Sbjct: 25 KTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVF 84
Query: 533 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592
+ + + + A + D ++L + ++ +
Sbjct: 85 PDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKN 144
Query: 593 VRRGVADPSRIAVGGHS---YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF 649
+ +A+ GHS YGA L ++ + A + N + P+G +
Sbjct: 145 GDVKLDFLDNVAITGHSMGGYGAICGY-LKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFK 203
Query: 650 RTLWEATNVYIEMSP---ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 704
L E + P I + + ++IH D ++ E +A+K
Sbjct: 204 GYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKATS 261
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 52.8 bits (125), Expect = 4e-08
Identities = 36/266 (13%), Positives = 68/266 (25%), Gaps = 29/266 (10%)
Query: 467 TNFPHPYPTLASLQKEMIKYQ-RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKS 525
+ + + Q I Y A +YLPPGY + K L+ +
Sbjct: 8 SGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSE 65
Query: 526 KDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSA 585
D + + I + P I +G + + L+
Sbjct: 66 NDWFEGGGRAN-VIADNLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYI 124
Query: 586 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF 645
E+ D A+ G S G + ++ F S +
Sbjct: 125 ES-----NYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP--------- 170
Query: 646 QTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705
N + A + K + I G D +G +R + +
Sbjct: 171 -------NTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNI 219
Query: 706 LSRLVLLPFEHHVYAARENVMHVIWE 731
L+ H + + + +
Sbjct: 220 NHVYWLIQGGGHDFNVWKPGLWNFLQ 245
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 49.2 bits (116), Expect = 8e-07
Identities = 24/201 (11%), Positives = 47/201 (23%), Gaps = 30/201 (14%)
Query: 550 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHS 609
F V S+ +G ++ + +S + + I + S
Sbjct: 55 LSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAAS 111
Query: 610 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGFQTEFRTLWEATNVY--------- 659
A + +++ F + TL GF + E N
Sbjct: 112 LSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGS 171
Query: 660 -------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706
S + P++ DD V + ++
Sbjct: 172 EVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEEVYDMLAHIR--TGH 227
Query: 707 SRLVLLPFEHHVYAARENVMH 727
+L L H V+
Sbjct: 228 CKLYSLLGSSHDLGENLVVLR 248
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 30/175 (17%)
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644
+ P+ AV G S A L + P F A SG + G
Sbjct: 103 TSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLD-PSQAMG 161
Query: 645 FQTEFRTLWEA-------------TNVYIEMSPITHANKIKK---PILIIHGEVDDKV-- 686
+ +A + P+ + K+ + + G
Sbjct: 162 PTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLG 221
Query: 687 ----------GLFPMQAERFFDALKGHGALSRLVLLPFE-HHVYAARENVMHVIW 730
G +F DA G + + P H + ++ +
Sbjct: 222 GNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEYWGAQLNAMK 276
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.7 bits (107), Expect = 9e-06
Identities = 20/211 (9%), Positives = 52/211 (24%), Gaps = 17/211 (8%)
Query: 533 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592
P+ + +T +++ LA + + P+ D + + + +
Sbjct: 37 NAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWL 96
Query: 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTL 652
P A G + G + L A P F + SG +
Sbjct: 97 AANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLY-PSNTTTNGAIAAGM 155
Query: 653 WEA-------------TNVYIEMSPITHANKIKK---PILIIHGEVDDKVGLFPMQAERF 696
+ + P HA+ + + + + M +
Sbjct: 156 QQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAA 215
Query: 697 FDALKGHGALSRLVLLPFEHHVYAARENVMH 727
++ + + + + +
Sbjct: 216 EAMGNSRMFYNQYRSVGGHNGHFDFPASGDN 246
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 29/162 (17%), Positives = 43/162 (26%), Gaps = 28/162 (17%)
Query: 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATN 657
DPS+I VGG S G + A + A I + E
Sbjct: 149 IDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLW 208
Query: 658 VY---------------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERF 696
+ S I + P LII E D + E F
Sbjct: 209 ILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYD----PLRDEGEVF 264
Query: 697 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738
L+ G + +V H + N V+ + +
Sbjct: 265 GQMLRRAGVEASIVRYRGVLHGFI---NYYPVLKAARDAINQ 303
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Score = 42.8 bits (99), Expect = 4e-05
Identities = 17/139 (12%), Positives = 29/139 (20%), Gaps = 15/139 (10%)
Query: 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP 642
E ++ + + HS G L H G
Sbjct: 44 PRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGII--------LV 95
Query: 643 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702
GF TL + K +I + D V ++ +
Sbjct: 96 SGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIV--PFSFSKDLAQQID- 152
Query: 703 HGALSRLVLLPFEHHVYAA 721
+ L + H
Sbjct: 153 ----AALYEVQHGGHFLED 167
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 13/138 (9%), Positives = 28/138 (20%), Gaps = 4/138 (2%)
Query: 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643
S A + + DP + + + F
Sbjct: 112 SVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCF 171
Query: 644 GFQTEFRTLWEATNVYIEMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALK 701
+ + P + ++H D+ + Q L+
Sbjct: 172 TRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELL--TLRQTNCLISCLQ 229
Query: 702 GHGALSRLVLLPFEHHVY 719
+ +L L H
Sbjct: 230 DYQLSFKLYLDDLGLHND 247
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.0 bits (95), Expect = 3e-04
Identities = 20/147 (13%), Positives = 34/147 (23%), Gaps = 27/147 (18%)
Query: 585 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-- 642
+ P+ A G S L A+ P F + SG N + +
Sbjct: 98 TREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWP 157
Query: 643 ----------FGFQTEFRTLWEATNVYIEMSPITHANKIKK---PILIIHGEVDDKV--- 686
G+ + + P+ ++ I + G
Sbjct: 158 TLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGG 217
Query: 687 ---------GLFPMQAERFFDALKGHG 704
GL + F D G
Sbjct: 218 DNIPAKFLEGLTLRTNQTFRDTYAADG 244
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 24/213 (11%), Positives = 48/213 (22%), Gaps = 10/213 (4%)
Query: 534 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593
S + S + A L + + + +
Sbjct: 105 RSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAEL 164
Query: 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW 653
+ + P + LA T +
Sbjct: 165 WQQMV-PDWLGSMPTPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIV 223
Query: 654 EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLF---PMQAERFFDALKGHGALSRLV 710
+ P P+L++ G+ ++ + F DAL G +L+
Sbjct: 224 -SVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLM 282
Query: 711 LLPFEH-----HVYAARENVMHVIWETDRWLQK 738
LP H+ N + V W+ +
Sbjct: 283 SLPALGVHGNSHMMMQDRNNLQVADLILDWIGR 315
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 34/239 (14%), Positives = 58/239 (24%), Gaps = 43/239 (17%)
Query: 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 541
E I Q DG A + P P P + E + +R + +
Sbjct: 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVI-AQEIFGVNA---FMRETVSWLVD 53
Query: 542 MTPTSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVA 598
+ L R A L + KL +E V EAA+ +
Sbjct: 54 QGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY- 112
Query: 599 DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNV 658
++ + G+ G + + A
Sbjct: 113 SNGKVGLVGYCLGGALAFLVAAKGYVDRAV--------------------------GYYG 146
Query: 659 YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHH 717
+ ++K P L G D P + + G L ++ H
Sbjct: 147 VGLEKQLNKVPEVKHPALFHMGGQDHF---VPAPSRQLITEGFGANPLLQVHWYEEAGH 202
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (89), Expect = 0.001
Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 14/239 (5%)
Query: 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103
RIA+ V+ + + ++D + + SP + S W + + L +
Sbjct: 5 RIAYVVQTNGGQFPY----ELRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAY 55
Query: 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163
S R + G Q + ++ +
Sbjct: 56 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115
Query: 164 LDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223
+ + T PD + + TS Q T + +
Sbjct: 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQ 172
Query: 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP--RDIIYT 280
D + D G + + D + V + D ++P +IY+
Sbjct: 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS 231
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 39.4 bits (90), Expect = 0.001
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 22/150 (14%)
Query: 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL 548
+DGV L LY P DGP+P L P + F+ T +++
Sbjct: 13 RDGVRLAVDLYRPDA-----DGPVPVLLVRNP------------YDKFDVFAWSTQSTNW 55
Query: 549 IFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGG 607
+ R +AV+ G + AE + ++ + D + + G
Sbjct: 56 LEFVRDGYAVVI---QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCDG-NVGMFG 111
Query: 608 HSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637
SY S +
Sbjct: 112 VSYLGVTQWQAAVSGVGGLKAIAPSMASAD 141
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 38.3 bits (87), Expect = 0.002
Identities = 24/149 (16%), Positives = 32/149 (21%), Gaps = 30/149 (20%)
Query: 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTL----- 652
DPSRIAVGG S G + A + A +A L
Sbjct: 148 IDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPL 207
Query: 653 ---------------------WEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM 691
+ P + E+D
Sbjct: 208 WHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELD----PLRD 263
Query: 692 QAERFFDALKGHGALSRLVLLPFEHHVYA 720
+ + L G L P H A
Sbjct: 264 EGIEYALRLLQAGVSVELHSFPGTFHGSA 292
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 751 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.96 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.96 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.95 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.92 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.9 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.89 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.89 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.88 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.88 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.87 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.86 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.84 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.84 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.84 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.83 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.83 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.81 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.81 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.81 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.79 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.78 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.78 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.78 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.77 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.77 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.77 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.76 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.76 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.75 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.75 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.74 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.74 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.74 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.72 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.7 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.7 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.7 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.7 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.7 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.7 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.69 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.69 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.68 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.68 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.67 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.67 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.66 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.66 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.66 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.66 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.66 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.65 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.65 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.64 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.64 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.63 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.62 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.62 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.61 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.6 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.6 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.59 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.59 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.58 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.57 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.56 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.56 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.54 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.53 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.5 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.49 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.49 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.49 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.47 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.47 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.47 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.44 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.44 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.39 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.39 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.38 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.38 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.36 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.36 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.26 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.26 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.22 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.22 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.21 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.21 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.2 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.17 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.17 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.09 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.09 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.06 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.03 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.01 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.0 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.0 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.84 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.82 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.78 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.78 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.76 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.76 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.76 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.68 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.67 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.6 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.59 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.57 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.55 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.55 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.55 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.48 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.48 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.46 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.45 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.44 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.41 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.41 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.41 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.4 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.39 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.35 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.35 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.33 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.32 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.29 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.27 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.26 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.26 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.2 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.17 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.16 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.13 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.05 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.78 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.72 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.64 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.45 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.43 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.02 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.98 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 96.92 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 96.79 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.51 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.48 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.41 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 95.87 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 95.8 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.71 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.98 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.76 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.69 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 93.01 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 92.38 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 92.28 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 92.27 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.88 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 91.84 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.61 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 86.29 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 85.73 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.82 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.96 E-value=1.1e-28 Score=243.53 Aligned_cols=242 Identities=18% Similarity=0.187 Sum_probs=190.9
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.|++.+|.+|+++++.|++. +++.|+||++|||++.... ..+ ......|+++||+|+
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~----~~~~Pviv~~HGG~~~~~~---------~~~----~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA----PTPGPTVVLVHGGPFAEDS---------DSW----DTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS----CSSEEEEEEECSSSSCCCC---------SSC----CHHHHHHHHHTCEEE
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC----CCCceEEEEECCCCccCCC---------ccc----cHHHHHHHhhccccc
Confidence 46788999999999999999999762 3468999999997643211 111 245678899999999
Q ss_pred EcCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++++...++|.... ...+....++|+..+++++.++. +..+++++|+|+||.+++.++..+|+.++++++.+|.
T Consensus 73 ~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~ 150 (260)
T d2hu7a2 73 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASV 150 (260)
T ss_dssp EECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCC
T ss_pred cceeeeccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccc
Confidence 977765555544311 11223456789999999999875 5679999999999999999999999999999999998
Q ss_pred CCCCCCccCcc-----cccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 636 YNKTLTPFGFQ-----TEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 636 ~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
.+......... ......+...+.+...++..+++++++|+|++||+.|.+|| +.++.+++++|++++++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp--~~~~~~~~~~l~~~~~~~~~~ 228 (260)
T d2hu7a2 151 VDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTP--LKPLLRLMGELLARGKTFEAH 228 (260)
T ss_dssp CCHHHHHHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccchhhcccccCCCceeeecccCceec--HHHHHHHHHHHHHCCCCeEEE
Confidence 66321100000 00111224466788889999999999999999999999999 999999999999999999999
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+||+++|.+...++..+++..+++||.++++
T Consensus 229 ~~~g~~H~~~~~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 229 IIPDAGHAINTMEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp EETTCCSSCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCChHhHHHHHHHHHHHHHHHhc
Confidence 9999999998778888899999999999986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=1.3e-28 Score=242.72 Aligned_cols=248 Identities=21% Similarity=0.256 Sum_probs=190.3
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCc-hHHHHHHhCCeEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~v 557 (751)
++.|++.|...+|.++.+.+++|+++++++ ++|+||++|||++... ....+.. .....++++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~lP~~~~~~k--k~P~iv~~HGGp~~~~-----------~~~~~~~~~~~~~~a~~g~~V 67 (258)
T d2bgra2 1 MPSKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQK-----------ADTVFRLNWATYLASTENIIV 67 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECTTCCTTS--CEEEEEECCCCTTCCC-----------CCCCCCCSHHHHHHHTTCCEE
T ss_pred CCceeEEEEEeCCcEEEEEEEECCCcCCCC--CeeEEEEEcCCCCccc-----------CCCccCcCHHHHHHhcCCcEE
Confidence 357899999999999999999999987655 5999999999743211 1111111 2334567899999
Q ss_pred EEcCCCCCCCCCCC---CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 558 LAGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 558 ~~~~~~~~~g~g~~---~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
+.+++++..+.+.. .....+......++..+++++.++..+|+++|+++|+|+||.+++.++..+|+.+.+++..++
T Consensus 68 ~~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T d2bgra2 68 ASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP 147 (258)
T ss_dssp EEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESC
T ss_pred EeecccccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeec
Confidence 99777654443321 111122334577888999999999999999999999999999999999999999998888887
Q ss_pred CCCCCCCccCcc---cccccchhhHHHHHhcCcccccCCCC-CCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 004475 635 SYNKTLTPFGFQ---TEFRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 710 (751)
Q Consensus 635 ~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~ 710 (751)
............ ......+...+.+...+++..+++++ +|+|++||++|.+|| +.++.+++++|+++|++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s~~~~~~l~~~g~~~~~~ 225 (258)
T d2bgra2 148 VSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVH--FQQSAQISKALVDVGVDFQAM 225 (258)
T ss_dssp CCCGGGSBHHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSC--THHHHHHHHHHHHHTCCCEEE
T ss_pred ccccccccccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCccc--HHHHHHHHHHHHHCCCCEEEE
Confidence 654322211000 01122334566777888888888765 899999999999999 999999999999999999999
Q ss_pred EeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 711 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 711 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
+||+++|++...+....+.+.+.+||+++|.
T Consensus 226 ~~~g~~H~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 226 WYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp EETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 9999999987777778889999999999986
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.5e-28 Score=238.19 Aligned_cols=239 Identities=17% Similarity=0.190 Sum_probs=172.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|.++.+++++|.++++++ ++|+||++||||+.... .+.+.. ......|+++||+|+++|+++..++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~--k~Pviv~~HGGp~~~~~--------~~~~~~--~~~~~~la~~G~~vv~~d~rGs~~~ 77 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTT--HYPLLLVVDGTPGSQSV--------AEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQ 77 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSS--CEEEEEECCCCTTCCCC--------CCCCCC--SHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred eCCeEEEEEEEECCCcCCCC--ceeEEEEEcCCccccCc--------CCCcCc--chHHHHHhcCCcEEEEecccccccc
Confidence 48999999999999887655 49999999997532110 011111 1335578899999999777655554
Q ss_pred CCC---CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCCCCC
Q 004475 569 GDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLT 641 (751)
Q Consensus 569 g~~---~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~~~~d~~~~ 641 (751)
|.. .....+......|+.++++++.+++.+|++||+++|+|+||++|+.++...++ .+++.+...+.......
T Consensus 78 g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d1xfda2 78 GTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY 157 (258)
T ss_dssp HHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS
T ss_pred chhHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc
Confidence 432 11122234558899999999999999999999999999999999998877654 46777777765443221
Q ss_pred ccCc-ccccccchhhHHHHHhcCcccccCCC-CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 642 PFGF-QTEFRTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 642 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
.... ......+....+.+...++..++.++ ++|+|++||+.|.+|| +.++.+++++|++.+++++++++|+++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp--~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~ 235 (258)
T d1xfda2 158 ASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIH--FQHTAELITQLIRGKANYSLQIYPDESHYF 235 (258)
T ss_dssp BHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCCCEEEEETTCCSSC
T ss_pred ccccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 1000 00001111122334444555556664 6899999999999999 999999999999999999999999999998
Q ss_pred CccccHHHHHHHHHHHHHHHhc
Q 004475 720 AARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
........+.+.+++||+++|+
T Consensus 236 ~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 236 TSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCcCHHHHHHHHHHHHHHhhC
Confidence 7666677788999999999885
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.92 E-value=2.7e-24 Score=221.02 Aligned_cols=236 Identities=18% Similarity=0.205 Sum_probs=169.1
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
+.....|.+.++. +|..+.++++.|++ .+++|+||++||.+ +...........|+++||
T Consensus 101 ~~~~~~e~v~ip~-dg~~l~g~l~~P~~-----~~~~P~Vi~~hG~~---------------~~~e~~~~~~~~l~~~G~ 159 (360)
T d2jbwa1 101 LLSPPAERHELVV-DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE---------------STKEESFQMENLVLDRGM 159 (360)
T ss_dssp GSSSCEEEEEEEE-TTEEEEEEEECCSS-----SCCEEEEEEECCSS---------------CCTTTTHHHHHHHHHTTC
T ss_pred hCCCCeEEeecCc-CCcccceEEEecCC-----CCCceEEEEeCCCC---------------ccHHHHHHHHHHHHhcCC
Confidence 3446789999984 78899999999976 45699999999952 111222355678899999
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+|++ ++++|+|.+........+...++..+++++..+..+|++||+|+|+||||++|+.+|+..| +++++|+.+++
T Consensus 160 ~vl~---~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~ 235 (360)
T d2jbwa1 160 ATAT---FDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGF 235 (360)
T ss_dssp EEEE---ECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC
T ss_pred EEEE---EccccccccCccccccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEccc
Confidence 9999 5556776654322222233345667889999998899999999999999999999999986 68999999998
Q ss_pred CCCCCCccCccccc-------cc-chh--hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC
Q 004475 636 YNKTLTPFGFQTEF-------RT-LWE--ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 705 (751)
Q Consensus 636 ~d~~~~~~~~~~~~-------~~-~~~--~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~ 705 (751)
.+............ .. ... ........+....+.++++|+|++||++|. +| +.++..+++.+.. .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp--~~~~~~l~~~~~~--~ 310 (360)
T d2jbwa1 236 SDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VP--LSFVDTVLELVPA--E 310 (360)
T ss_dssp SCSTTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SC--THHHHHHHHHSCG--G
T ss_pred ccHHHHhhhhhhhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cC--HHHHHHHHHhcCC--C
Confidence 76432211100000 00 000 112223445555678899999999999998 67 8999999988754 3
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+++++++++++|... .........+.+||.++|...
T Consensus 311 ~~~l~~~~~g~H~~~--~~~~~~~~~i~dWl~~~L~~g 346 (360)
T d2jbwa1 311 HLNLVVEKDGDHCCH--NLGIRPRLEMADWLYDVLVAG 346 (360)
T ss_dssp GEEEEEETTCCGGGG--GGTTHHHHHHHHHHHHHHTSS
T ss_pred CeEEEEECCCCcCCC--cChHHHHHHHHHHHHHHhccC
Confidence 578899999999753 333466778999999998643
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=9.6e-23 Score=207.78 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=166.5
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
.+.++.+.++|++.+|.+|.++++.|.+. ++++|+||++||++.... + ......++++||
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~----~~~~P~Vv~~hG~~~~~~------------~----~~~~~~~a~~G~ 109 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGRG------------F----PHDWLFWPSMGY 109 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCCC------------C----GGGGCHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC----CCCccEEEEecCCCCCcC------------c----HHHHHHHHhCCC
Confidence 44567889999999999999999999763 346899999999753210 1 122346789999
Q ss_pred EEEEcCCCCCCCCCCCCC---------------------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Q 004475 556 AVLAGPSIPIIGEGDKLP---------------------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGH 608 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~---------------------------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~ 608 (751)
+|+++|++ |+|.+.. ........+.|+..+++++..++.+|+++|+++|+
T Consensus 110 ~v~~~D~r---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~ 186 (322)
T d1vlqa_ 110 ICFVMDTR---GQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGG 186 (322)
T ss_dssp EEEEECCT---TCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EEEEeecc---ccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhcccccc
Confidence 99995554 4443211 11233456789999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC----cc-cc--------cccchhhHHHHHhcCcccccCCCCCCE
Q 004475 609 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG----FQ-TE--------FRTLWEATNVYIEMSPITHANKIKKPI 675 (751)
Q Consensus 609 S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~----~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~P~ 675 (751)
|+||.+++.++...| +++++++..+.......... .. .. ........+.+...++..++.++++|+
T Consensus 187 S~GG~~a~~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~ 265 (322)
T d1vlqa_ 187 SQGGGIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPA 265 (322)
T ss_dssp THHHHHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCE
T ss_pred ccchHHHHHHHhcCC-CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCE
Confidence 999999999998884 68888888776442110000 00 00 000001123345568888899999999
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 676 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 676 li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
|++||++|.++| +.++.++++++ +.++++++||+++|.... .......++||+++|.
T Consensus 266 Lv~~G~~D~~vp--~~~~~~~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 266 LFSVGLMDNICP--PSTVFAAYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp EEEEETTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCcC--HHHHHHHHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 999999999999 88887777654 567899999999997532 2233456799999873
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=7e-22 Score=196.85 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=173.6
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+++|+|+|++.||.+|+++|+.|+++++++ ++|+||++|||++..... .+.......++..++.++
T Consensus 5 y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~iv~~HGG~~~~~~~------------~~~~~~~~~~~~~~~~~~ 70 (280)
T d1qfma2 5 YQTVQIFYPSKDGTKIPMFIVHKKGIKLDG--SHPAFLYGYGGFNISITP------------NYSVSRLIFVRHMGGVLA 70 (280)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTCCCSS--CSCEEEECCCCTTCCCCC------------CCCHHHHHHHHHHCCEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCCCCC--CeEEEEEECCCCcccCCC------------Ccchhhhhhhcccceeee
Confidence 467899999999999999999999876544 599999999987543211 112233445566788887
Q ss_pred EcCCCCCCCCCCC---CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~g~~---~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
...+......+.. ............+...+..+...+..++...++++|+|.||.++..++...++.+++++...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~ 150 (280)
T d1qfma2 71 VANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGV 150 (280)
T ss_dssp EECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCC
T ss_pred ccccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccc
Confidence 7554333222111 1112233444566667777777777778889999999999999999999999999999999988
Q ss_pred CCCCCCccCccc-------ccccchhhHHHHHhcCcc------cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 636 YNKTLTPFGFQT-------EFRTLWEATNVYIEMSPI------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 636 ~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~------~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
.+.......... .....+.....+...++. ..+.....|+||+||++|.+|| +.++++++++|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp--~~~s~~l~~aL~~ 228 (280)
T d1qfma2 151 MDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVV--PLHSLKFIATLQY 228 (280)
T ss_dssp CCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSC--THHHHHHHHHHHH
T ss_pred cchhhhccccccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCC--HHHHHHHHHHHHH
Confidence 764322110000 011112222333333333 3334445689999999999999 9999999999964
Q ss_pred -------CCCcEEEEEeCCCCCcCCccc-cHHHHHHHHHHHHHHHhcCCC
Q 004475 703 -------HGALSRLVLLPFEHHVYAARE-NVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 703 -------~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~fl~~~l~~~~ 744 (751)
.+++++++++|+++|++.... +..+.+.++++||+++|+...
T Consensus 229 ~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~ 278 (280)
T d1qfma2 229 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 278 (280)
T ss_dssp HTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 478899999999999986443 234566788999999998654
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.1e-22 Score=206.84 Aligned_cols=232 Identities=15% Similarity=0.131 Sum_probs=168.3
Q ss_pred ccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCe
Q 004475 476 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 555 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 555 (751)
.+.+..++++|++.+|.+|.++++.|.+ ++++|+||++||++... ......+..|+++||
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~-----~~~~P~vv~~HG~~~~~---------------~~~~~~~~~la~~Gy 110 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNASY---------------DGEIHEMVNWALHGY 110 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCCS---------------GGGHHHHHHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC-----CCCceEEEEecCCCCCc---------------cchHHHHHHHHHCCC
Confidence 3456788999999999999999999986 45799999999974211 112245668899999
Q ss_pred EEEEcCCCCCCCCCCCCCC--------------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 004475 556 AVLAGPSIPIIGEGDKLPN--------------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~--------------------~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a 615 (751)
+|+++| .+|+|.+... .......+.|...+++++..++.+++.+|+++|+|+||.++
T Consensus 111 ~vi~~D---~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~ 187 (318)
T d1l7aa_ 111 ATFGML---VRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLT 187 (318)
T ss_dssp EEEEEC---CTTTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHH
T ss_pred EEEEEe---eCCCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHH
Confidence 999944 4555554211 11233557889999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCCCCCC--------ccCc----ccccccchhh---HHHHHhcCcccccCCCCCCEEEEEc
Q 004475 616 AHLLAHAPHLFCCGIARSGSYNKTLT--------PFGF----QTEFRTLWEA---TNVYIEMSPITHANKIKKPILIIHG 680 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d~~~~--------~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P~li~~G 680 (751)
+..+...+ +++++++..+....... .... .......+.. ........+...++++++|+|++||
T Consensus 188 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G 266 (318)
T d1l7aa_ 188 IAAAALSD-IPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIG 266 (318)
T ss_dssp HHHHHHCS-CCSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEE
T ss_pred HHHhhcCc-ccceEEEeccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEE
Confidence 99999985 56666766665331100 0000 0000011111 1122344566678899999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 681 ~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
++|.+|| +.++.++++++ +.++++++||+++|.+. .+..+++++||+++|+
T Consensus 267 ~~D~~vp--~~~~~~~~~~l---~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 267 LIDKVTP--PSTVFAAYNHL---ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp TTCSSSC--HHHHHHHHHHC---CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCCCcC--HHHHHHHHHHc---CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 9999999 99998888776 45789999999999763 3677889999999997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.1e-21 Score=204.91 Aligned_cols=356 Identities=11% Similarity=-0.014 Sum_probs=218.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCc--ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~--~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
+|+++++.+ ++.+.+...... .......|||||++|+|..+..+.-+ ......+|++++.+++.++|+.....
T Consensus 38 ~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r-~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ-HSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS-SCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred cEEEEECCC----CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeE-eeccccEEEEEccCCceeeccCccCC
Confidence 789999988 888765432221 14567789999999999764322111 24568999999999999999654322
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
. ..+..+.|||||+.|+|... .+||+++
T Consensus 113 ~--~~l~~~~wSPDG~~iafv~~--------------------------------------------------~nl~~~~ 140 (465)
T d1xfda1 113 N--AKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYCA 140 (465)
T ss_dssp S--CCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEES
T ss_pred c--cccceeeeccCCceEEEEec--------------------------------------------------ceEEEEe
Confidence 1 12456899999999999843 5899998
Q ss_pred C-CCCceecCCC---ce-----------------EEeeeeCCCCceEEEEEecCCcc--cccc-----------------
Q 004475 164 L-DGTAKDFGTP---AV-----------------YTAVEPSPDQKYVLITSMHRPYS--YKVP----------------- 203 (751)
Q Consensus 164 ~-~G~~~~lt~~---~~-----------------~~~~~~SpDG~~i~~~~~~~~~~--~~~~----------------- 203 (751)
. +|+..++|.. .. ...+.|||||++|+|.+.+.... +..+
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 8 5566666643 11 13566999999999987654210 0000
Q ss_pred cCCC--ceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeec
Q 004475 204 CARF--SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQ 281 (751)
Q Consensus 204 ~~~~--~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (751)
.+.. ...|+++|++++....+...+.. .......+..+.|+||++. ++.... +......|+++
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~------~~~~~~y~~~~~W~~d~~~-~~~~~n--------R~q~~~~i~~~ 285 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDD------PRMREYYITMVKWATSTKV-AVTWLN--------RAQNVSILTLC 285 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCC------GGGSSEEEEEEEESSSSEE-EEEEEE--------TTSCEEEEEEE
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCc------CccccceeeeeEEcCCCeE-EEEEEc--------cccccceEEEE
Confidence 0111 13688899887654432221111 1111223457899999975 333221 11223468888
Q ss_pred cCCCCCCCCceEeEe-ece-----eEE-EEEecCCceEEEeeee-cccceeEEEecCCC-----CCCcceeeeecccccc
Q 004475 282 PAEPAEGEKPEILHK-LDL-----RFS-VSWCDDSLALVNETWY-KTSQTRTWLVCPGS-----KDVAPRVLFDRVFENV 348 (751)
Q Consensus 282 ~~~~~~~~~~~~l~~-~~~-----~~~-~~~spdg~~l~~~~~~-~~~~~~l~~~~~~~-----~~~~~~~l~~~~~~~~ 348 (751)
+.. ++..+.+.. ... ... +.|+|||+.++|.... .++..++|.+.+.+ .....++||.+...-.
T Consensus 286 d~~---tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~ 362 (465)
T d1xfda1 286 DAT---TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (465)
T ss_dssp ETT---TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred cCC---CCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEE
Confidence 875 445444433 211 224 8999999998775421 23445677664321 1134467776544311
Q ss_pred cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCC
Q 004475 349 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 428 (751)
Q Consensus 349 ~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 428 (751)
. .++|+.+++.|+|.+.. ....+.+||++++.++...++...... + ..+.
T Consensus 363 ~------i~~~d~~~~~vyF~a~~----------------~~p~~~hly~v~l~g~~~~~~lt~~~~---~-----~~~~ 412 (465)
T d1xfda1 363 K------ILAYDEKGNKIYFLSTE----------------DLPRRRQLYSANTVGNFNRQCLSCDLV---E-----NCTY 412 (465)
T ss_dssp E------EEEEETTTTEEEEEESS----------------SCTTCCEEEEECSSTTCCCBCSSTTSS---S-----SCCC
T ss_pred E------EEEEcCCCCEEEEEEeC----------------CCCCceEEEEEECCCCCcceeeccccC---C-----CCCE
Confidence 1 15689999999998832 124567999999987654333221110 0 1123
Q ss_pred cceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEee
Q 004475 429 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 467 (751)
Q Consensus 429 ~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt 467 (751)
+.++|||||++++.+.+++..|. +.+++..+++..+..
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~L 450 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDL 450 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEE
Confidence 45789999999999998887654 777787777765443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3.7e-21 Score=190.29 Aligned_cols=252 Identities=17% Similarity=0.190 Sum_probs=173.3
Q ss_pred CeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCC
Q 004475 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (751)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (751)
.+|||++..+. .....+||++|.+|+..++|+..... +..|+|||||++|||.+....
T Consensus 4 ~~iay~~~~~~----~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~~~------------- 61 (269)
T d2hqsa1 4 TRIAYVVQTNG----GQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFESG------------- 61 (269)
T ss_dssp CEEEEEEECSS----SSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTTS-------------
T ss_pred CeEEEEEEeCC----CCceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEeecc-------------
Confidence 79999986431 13335899999999999999877653 568899999999999964311
Q ss_pred ceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCccc
Q 004475 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (751)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (751)
...++.++. .+..++++.. .....+.|||||+.|++......
T Consensus 62 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--- 105 (269)
T d2hqsa1 62 ---------------------------------RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 105 (269)
T ss_dssp ---------------------------------SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---
T ss_pred ---------------------------------CcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC---
Confidence 147888898 4577777766 77778999999999999865432
Q ss_pred ccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceee
Q 004475 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (751)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~ 280 (751)
...+..+................ .....|+++++. +++.... .....|++
T Consensus 106 -------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~---------~g~~~i~~ 155 (269)
T d2hqsa1 106 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAFTSDQ---------AGRPQVYK 155 (269)
T ss_dssp -------SCEEEEEETTTCCEEECCCCSSC-------------EEEEEECTTSSE-EEEEECT---------TSSCEEEE
T ss_pred -------ccceeecccccccceeeeecccc-------------cccccccccccc-ceecccc---------cCCceEee
Confidence 12333444433333332222111 224588999998 6665422 12247888
Q ss_pred ccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeee
Q 004475 281 QPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 359 (751)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 359 (751)
.+++ +.....++....... +.|||||+.+++.... .+...+++++..++ . .+++...... . .+.|
T Consensus 156 ~~~~---~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~--~-~~~~~~~~~~-~------~p~~ 221 (269)
T d2hqsa1 156 VNIN---GGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG--G-VQVLSSTFLD-E------TPSL 221 (269)
T ss_dssp EETT---SSCCEECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTC--C-EEECCCSSSC-E------EEEE
T ss_pred eecc---cccceeeecccccccccccccccceeEEEeec-CCceeeeEeecccc--c-ceEeecCccc-c------ceEE
Confidence 8886 556666666666667 9999999999998754 34568999998774 2 2333322221 1 1789
Q ss_pred CCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccc
Q 004475 360 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 414 (751)
Q Consensus 360 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 414 (751)
||||++|+|.+.. .....|++++++++..++|+..++
T Consensus 222 SPDG~~i~f~s~~------------------~~~~~l~~~~~dg~~~~~lt~~~g 258 (269)
T d2hqsa1 222 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATDG 258 (269)
T ss_dssp CTTSSEEEEEEEE------------------TTEEEEEEEETTSCCEEECCCSSS
T ss_pred CCCCCEEEEEEcC------------------CCCcEEEEEECCCCCEEEEeCCCC
Confidence 9999999998843 134479999999988888876543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.6e-21 Score=191.45 Aligned_cols=247 Identities=14% Similarity=0.082 Sum_probs=173.4
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+||+.|.++ +..+.|+..+ ..+.+|+|||||++|||++.. .....+|+++..++..++++.....
T Consensus 18 ~~~l~i~d~dG----~~~~~l~~~~--~~~~sP~wSPDGk~IAf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (269)
T d2hqsa1 18 PYELRVSDYDG----YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPRH 84 (269)
T ss_dssp CEEEEEEETTS----CSCEEEEEES--SCEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSSC
T ss_pred eEEEEEEcCCC----CCcEEEecCC--CceeeeEECCCCCEEEEEEee-------ccCcceeeeecccCceeEEeeeecc
Confidence 45899999999 9999998433 347899999999999998742 4557899999999999999877653
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
...+.|||||+.|++....... ..++...
T Consensus 85 -----~~~~~~spdg~~i~~~~~~~~~----------------------------------------------~~~~~~~ 113 (269)
T d2hqsa1 85 -----NGAPAFSPDGSKLAFALSKTGS----------------------------------------------LNLYVMD 113 (269)
T ss_dssp -----EEEEEECTTSSEEEEEECTTSS----------------------------------------------CEEEEEE
T ss_pred -----cccceecCCCCeeeEeeecCCc----------------------------------------------cceeecc
Confidence 4577999999999998542111 2344343
Q ss_pred C-CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 164 ~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
. .......... .....+.|+++++.+++...... ..++++.+.+++...++......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~~----------- 172 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ----------- 172 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSSE-----------
T ss_pred cccccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeeccccc-----------
Confidence 3 3344444444 55567889999999988865432 34788999988876665443222
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT 320 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~ 320 (751)
.....|||||+. +++.+.. .....+++++.+ ++. ..++...+... |.|||||++|+|.+.. .
T Consensus 173 --~~~~~~spdg~~-~~~~~~~---------~~~~~i~~~~~~---~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~ 235 (269)
T d2hqsa1 173 --NQDADVSSDGKF-MVMVSSN---------GGQQHIAKQDLA---TGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQ-G 235 (269)
T ss_dssp --EEEEEECTTSSE-EEEEEEC---------SSCEEEEEEETT---TCC-EEECCCSSSCEEEEECTTSSEEEEEEEE-T
T ss_pred --ccccccccccce-eEEEeec---------CCceeeeEeecc---ccc-ceEeecCccccceEECCCCCEEEEEEcC-C
Confidence 235699999999 6665422 122367777764 333 34444455556 9999999999998865 3
Q ss_pred cceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCC
Q 004475 321 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS 361 (751)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp 361 (751)
...+||+++++++ ..++|+....... . |+|||
T Consensus 236 ~~~~l~~~~~dg~--~~~~lt~~~g~~~-~------p~WSP 267 (269)
T d2hqsa1 236 MGSVLNLVSTDGR--FKARLPATDGQVK-F------PAWSP 267 (269)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSEEE-E------EEECC
T ss_pred CCcEEEEEECCCC--CEEEEeCCCCcEE-e------EEeCC
Confidence 4578999999984 5667766543211 1 78998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.88 E-value=1e-20 Score=203.55 Aligned_cols=359 Identities=11% Similarity=-0.024 Sum_probs=212.0
Q ss_pred eeEEeecCCCCCCCCcccccC---CCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKEVHG---YPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~---~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
+|+++|+.+ |+.+.+.. +.. ...+..++|||||++|||.++..... ......++|++++++++.++++..+
T Consensus 37 ~~~~~~~~t----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~-r~s~~~~~~l~d~~~~~~~~l~~~~ 111 (470)
T d2bgra1 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW-RHSYTASYDIYDLNKRQLITEERIP 111 (470)
T ss_dssp CEEEEETTT----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS-SSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECCC----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCccee-eeccCceEEEEECCCCcccccccCC
Confidence 689999999 98876542 111 22578999999999999987522111 1245689999999999999998776
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .+..+.|||||++|+|... .+||+
T Consensus 112 ~-----~~~~~~~SPDG~~ia~~~~--------------------------------------------------~~l~~ 136 (470)
T d2bgra1 112 N-----NTQWVTWSPVGHKLAYVWN--------------------------------------------------NDIYV 136 (470)
T ss_dssp T-----TEEEEEECSSTTCEEEEET--------------------------------------------------TEEEE
T ss_pred c-----cccccccccCcceeeEeec--------------------------------------------------ccceE
Confidence 5 3578899999999999833 47888
Q ss_pred EcC-CCCceecCCC--------------------ceEEeeeeCCCCceEEEEEecCCcccc--c----------------
Q 004475 162 GSL-DGTAKDFGTP--------------------AVYTAVEPSPDQKYVLITSMHRPYSYK--V---------------- 202 (751)
Q Consensus 162 ~~~-~G~~~~lt~~--------------------~~~~~~~~SpDG~~i~~~~~~~~~~~~--~---------------- 202 (751)
+++ +|+..+++.. .....+.|||||++|+|.+.+...... .
T Consensus 137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (470)
T d2bgra1 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (470)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeee
Confidence 888 5666666532 112346799999999998865421000 0
Q ss_pred c---cCC--CceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccc
Q 004475 203 P---CAR--FSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (751)
Q Consensus 203 ~---~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~ 277 (751)
. .+. -...+++++++++....+.... ....+..+......+..+.|+++++. +++...... +. ....
T Consensus 217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~r~~-~~-----~~~~ 288 (470)
T d2bgra1 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQ-NY-----SVMD 288 (470)
T ss_dssp ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESST-TE-----EEEE
T ss_pred ccccccccCCcceEEEEECCCcceeeecccc-ccCCccccCCCCceEEEEEEcCCCce-eEEEeeccC-Cc-----eEEE
Confidence 0 000 1134667777655433221100 00001111112223456899999975 333221110 00 0013
Q ss_pred eeeccCCCCCCCCceEeE------ee------ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 278 IYTQPAEPAEGEKPEILH------KL------DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 278 l~~~~~~~~~~~~~~~l~------~~------~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
++.++.. .+....+. .. ..... +.|++++...++.....++..+||+++.++ ...++++.+.
T Consensus 289 ~~~~d~~---tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g--~~~~~lt~g~ 363 (470)
T d2bgra1 289 ICDYDES---SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK--KDCTFITKGT 363 (470)
T ss_dssp EEEEETT---TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC--SCCEESCCSS
T ss_pred EEEecCC---CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccC--CceeeeccCC
Confidence 4444432 22222211 00 01113 677888766543333345668999999988 4667777654
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce-eEEeeccchhhhhceee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-ERIWESNREKYFETAVA 423 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~ 423 (751)
..- . ..+++|++.|+|.+... + ......+||++++.++.. +.|+..-.. .
T Consensus 364 ~~v-~-------~~~~~d~~~iyf~a~~~------------~--~~p~~~~ly~v~~~g~~~~~~lt~~~~~----~--- 414 (470)
T d2bgra1 364 WEV-I-------GIEALTSDYLYYISNEY------------K--GMPGGRNLYKIQLSDYTKVTCLSCELNP----E--- 414 (470)
T ss_dssp SCE-E-------EEEEECSSEEEEEESCG------------G--GCTTCBEEEEEETTCTTCEEESSTTTST----T---
T ss_pred eeE-E-------EEEEECCCEEEEEEecC------------C--CCcceEEEEEEECCCCCceeEecccccC----C---
Confidence 331 1 22677888888877321 1 123456899999987544 444321110 0
Q ss_pred eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeec
Q 004475 424 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 468 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~ 468 (751)
....+.++|||||++++.+.+++..|. +.+++..+|+..++.+
T Consensus 415 -~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 415 -RCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLE 457 (470)
T ss_dssp -TBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEe
Confidence 111234689999999999999988775 6677878887655443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.5e-20 Score=194.61 Aligned_cols=332 Identities=11% Similarity=0.113 Sum_probs=201.3
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcc-cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~ 80 (751)
||...++++|+.+ |..++|+...... .+..|.|||||++|||++. .+||+++..+++..++|..
T Consensus 88 s~~~~~~i~d~~~----~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-----------~nl~~~~~~~~~~~~lt~~ 152 (465)
T d1xfda1 88 SYTGYYVLSKIPH----GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------NNIYYCAHVGKQAIRVVST 152 (465)
T ss_dssp CCCSEEEEEESSS----CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------TEEEEESSSSSCCEEEECC
T ss_pred eccccEEEEEccC----CceeeccCccCCccccceeeeccCCceEEEEec-----------ceEEEEecCCCceEEEecc
Confidence 6778999999999 9999887433222 4678999999999999863 6899999999999999865
Q ss_pred CCcc--ccc------------eeeeeEEecCCcEEEEeecCCCCCCCC---CCCCCCCCceeeccccccccchhhhhccC
Q 004475 81 PDIC--LNA------------VFGSFVWVNNSTLLIFTIPSSRRDPPK---KTMVPLGPKIQSNEQKNIIISRMTDNLLK 143 (751)
Q Consensus 81 ~~~~--~~~------------~~~~~~wspDg~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (751)
.... .++ .-..+.|||||++|+|...+....... .......+......
T Consensus 153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~--------------- 217 (465)
T d1xfda1 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH--------------- 217 (465)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE---------------
T ss_pred cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee---------------
Confidence 4321 111 113567999999999997653332100 00001111111111
Q ss_pred CccchhhhhhheeeEEEEEcCCC-Cceec--CC-----C-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEE
Q 004475 144 DEYDESLFDYYTTAQLVLGSLDG-TAKDF--GT-----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (751)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~G-~~~~l--t~-----~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (751)
++..+. ......|+++++++ ..+.. .. . ..+..+.|+||++.+++..+ +... ...++++
T Consensus 218 Yp~~G~---~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n-R~q~--------~~~i~~~ 285 (465)
T d1xfda1 218 YPKAGS---ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN-RAQN--------VSILTLC 285 (465)
T ss_dssp CCBTTS---CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE-TTSC--------EEEEEEE
T ss_pred ccccCC---CCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc-cccc--------cceEEEE
Confidence 000000 00225799999944 32221 11 1 23567899999985555443 3211 3568899
Q ss_pred eCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCC----CCCCCC
Q 004475 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE----PAEGEK 290 (751)
Q Consensus 215 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 290 (751)
|+.+++.+.+..... . .++. .......|+|||+. ++|+...+ ...++.+|.+.+. ...+..
T Consensus 286 d~~tg~~~~~~~e~~-~---~wv~---~~~~~p~~~~dg~~-~~fi~~se-------~~g~~~ly~~~~~~~~~~~~~~~ 350 (465)
T d1xfda1 286 DATTGVCTKKHEDES-E---AWLH---RQNEEPVFSKDGRK-FFFIRAIP-------QGGRGKFYHITVSSSQPNSSNDN 350 (465)
T ss_dssp ETTTCCEEEEEEEEC-S---SCCC---CCCCCCEECTTSCS-EEEEEEEC-------CSSSSCEEEEEEECSSCCSSSCC
T ss_pred cCCCCcEEEEEEEcC-C---ceEe---ccCCceeEccCCCe-eEEEEeee-------ecccCceEEEEeccccccCCCce
Confidence 999887776643211 1 1111 11125699999999 55543221 1234566666431 122455
Q ss_pred ceEeEeeceeEE--EEEecCCceEEEeeeec-ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEE
Q 004475 291 PEILHKLDLRFS--VSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 367 (751)
Q Consensus 291 ~~~l~~~~~~~~--~~~spdg~~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~ 367 (751)
.+.|+.++..+. ++|+++++.|+|.++.. +...+||.++++++ ...+.|+...... ++...+.|||||++++
T Consensus 351 ~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~-~~~~~lt~~~~~~----~~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCDLVEN----CTYFSASFSHSMDFFL 425 (465)
T ss_dssp CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTTSSSS----CCCCEEEECTTSSEEE
T ss_pred eEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCC-CcceeeccccCCC----CCEEEEEECCCCCEEE
Confidence 678888888876 78999999999988643 46679999999885 3334443221111 1222378999999988
Q ss_pred EeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 368 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
..... ...+...+++..+++...++..+
T Consensus 426 ~~~s~------------------~~~P~~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 426 LKCEG------------------PGVPMVTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp EECCS------------------SSSCCEEEEETTTCCEEEEEECC
T ss_pred EEeec------------------CCCCeEEEEECCCCCEEEEEcCC
Confidence 77632 12345666677777765555443
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.87 E-value=1.1e-20 Score=176.46 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=152.8
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 559 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 559 (751)
+.+.++++..+| ++.+.+..|+... ..+.+++|++|+.|... ++ .........+..|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~---~~~~~~~vl~Hph~~~G--------G~--~~~~~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDV---AVQPVTAIVCHPLSTEG--------GS--MHNKVVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS---CCCSEEEEEECSCTTTT--------CS--TTCHHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCC---CCCCcEEEEECCCCCCC--------cC--CCChHHHHHHHHHHHcCCeEEE
Confidence 457788887666 7999999996532 22357889999653210 10 0011112456788999999999
Q ss_pred cCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC
Q 004475 560 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 639 (751)
Q Consensus 560 ~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~ 639 (751)
++++|+|.+...........+|+..+++|+.++. +..+++++|+||||.+|+.++.+. .++++|+++|..+..
T Consensus 73 ---fd~RG~G~S~g~~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~ 145 (218)
T d2fuka1 73 ---FNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 145 (218)
T ss_dssp ---ECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred ---eecCCCccCCCccCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccch
Confidence 5566777776554444567899999999999874 357899999999999999888875 367889988864321
Q ss_pred CCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 640 LTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
.. ...++.+|+|++||++|.++| ++++.++++++ ..+.+++++|+++|.|
T Consensus 146 ~~-------------------------~~~~~~~P~Lvi~G~~D~~vp--~~~~~~l~~~~---~~~~~l~~i~ga~H~f 195 (218)
T d2fuka1 146 DF-------------------------SDVQPPAQWLVIQGDADEIVD--PQAVYDWLETL---EQQPTLVRMPDTSHFF 195 (218)
T ss_dssp CC-------------------------TTCCCCSSEEEEEETTCSSSC--HHHHHHHHTTC---SSCCEEEEETTCCTTC
T ss_pred hh-------------------------hccccccceeeEecCCCcCcC--HHHHHHHHHHc---cCCceEEEeCCCCCCC
Confidence 10 012356899999999999999 88887776544 3457899999999988
Q ss_pred CccccHHHHHHHHHHHHHHHhcC
Q 004475 720 AARENVMHVIWETDRWLQKYCLS 742 (751)
Q Consensus 720 ~~~~~~~~~~~~~~~fl~~~l~~ 742 (751)
. ....+..+.+.+|+.++|..
T Consensus 196 ~--~~~~~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 196 H--RKLIDLRGALQHGVRRWLPA 216 (218)
T ss_dssp T--TCHHHHHHHHHHHHGGGCSS
T ss_pred C--CCHHHHHHHHHHHHHHhcCC
Confidence 5 34456888899999999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=1.2e-20 Score=194.80 Aligned_cols=318 Identities=11% Similarity=0.051 Sum_probs=198.0
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
.+||++++.+ |+.+++. ....+..++|||||++|++++. +....|+++++++++.++++....
T Consensus 24 g~v~v~d~~~----~~~~~~~---~~~~v~~~~~spDg~~l~~~~~--------~~g~~v~v~d~~~~~~~~~~~~~~-- 86 (360)
T d1k32a3 24 GQAFIQDVSG----TYVLKVP---EPLRIRYVRRGGDTKVAFIHGT--------REGDFLGIYDYRTGKAEKFEENLG-- 86 (360)
T ss_dssp TEEEEECTTS----SBEEECS---CCSCEEEEEECSSSEEEEEEEE--------TTEEEEEEEETTTCCEEECCCCCC--
T ss_pred CeEEEEECCC----CcEEEcc---CCCCEEEEEECCCCCEEEEEEc--------CCCCEEEEEECCCCcEEEeeCCCc--
Confidence 4799999988 9988875 4446899999999999999874 334679999999999999876654
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
.+..++|||||++|++.... ..++.+++
T Consensus 87 ---~v~~~~~spdg~~l~~~~~~-------------------------------------------------~~~~~~~~ 114 (360)
T d1k32a3 87 ---NVFAMGVDRNGKFAVVANDR-------------------------------------------------FEIMTVDL 114 (360)
T ss_dssp ---SEEEEEECTTSSEEEEEETT-------------------------------------------------SEEEEEET
T ss_pred ---eEEeeeecccccccceeccc-------------------------------------------------cccccccc
Confidence 36788999999999988442 47888888
Q ss_pred -CCCceecC-CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCcc
Q 004475 165 -DGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (751)
Q Consensus 165 -~G~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (751)
+++..++. .+ ..+..++|||||++|++......... .......+++|+..+++...++.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~~~----------- 180 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET---DGYVMQAIHVYDMEGRKIFAATTENSH----------- 180 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT---CSCCEEEEEEEETTTTEEEECSCSSSB-----------
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccce---eeccccceeeeccccCceeeecccccc-----------
Confidence 55544443 33 56778999999999999776543211 122346788999998877766443322
Q ss_pred CCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCC-----CCCCCceEeEeeceeEE-EEEecCCceEEEe
Q 004475 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP-----AEGEKPEILHKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 242 ~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~ 315 (751)
...+.|+|||++ |++.+.. ..+..++... .....+..+........ +.|+++++.++..
T Consensus 181 --~~~~~~spdg~~-l~~~s~~------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 245 (360)
T d1k32a3 181 --DYAPAFDADSKN-LYYLSYR------------SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245 (360)
T ss_dssp --EEEEEECTTSCE-EEEEESC------------CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCC
T ss_pred --cccccccCCCCE-EEEEeCC------------CceEcccccccceeeccccceEEEecccCccccceECCCcCccccc
Confidence 346799999999 7765421 1122222110 00111112222222333 5688888876543
Q ss_pred eee-cccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 316 TWY-KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 316 ~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
... ......++.++..++ ....+......... +.+.+++....+.. ......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------------------~~~~~~ 298 (360)
T d1k32a3 246 EYDLNDMYKRSSPINVDPG--DYRMIIPLESSILI-------YSVPVHGEFAAYYQ------------------GAPEKG 298 (360)
T ss_dssp CCCCTTGGGGCEECSCCCB--CEEEEEECSSEEEE-------EECCCCCSHHHHHH------------------CCCCCE
T ss_pred ceeecccccceeecccCcC--ceeEeeecCCCceE-------EEEEecCCCeeEEE------------------ecCCCC
Confidence 321 122345777766653 23333322111100 22333332111111 012345
Q ss_pred eeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 395 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
.|++||+++++.+.+... +. .++|||||++|++.... +.|+++|++.++.++.
T Consensus 299 ~i~~~d~~~~~~~~~~~~--------v~-------~~~~SpDG~~l~~~~~D----g~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 299 VLLKYDVKTRKVTEVKNN--------LT-------DLRLSADRKTVMVRKDD----GKIYTFPLEKPEDERT 351 (360)
T ss_dssp EEEEEETTTCCEEEEEEE--------EE-------EEEECTTSCEEEEEETT----SCEEEEESSCTTSCEE
T ss_pred EEEEEECCCCeEEEecCC--------cC-------EEEECCCCCEEEEEECC----CeEEEEECCCCCcceE
Confidence 789999998876554321 22 25899999999876532 5699999998876553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=2e-20 Score=186.25 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=163.3
Q ss_pred eeecCC--CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 36 VSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 36 p~~SPD--G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..+||| |++|||++. .+||++++++|+.++||..+. ....++|||||++|+|........
T Consensus 4 ~~~sPdi~G~~v~f~~~-----------~dl~~~d~~~g~~~~Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~~~~-- 65 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC-----------DDLWEHDLKSGSTRKIVSNLG-----VINNARFFPDGRKIAIRVMRGSSL-- 65 (281)
T ss_dssp CCEEEEEETTEEEEEET-----------TEEEEEETTTCCEEEEECSSS-----EEEEEEECTTSSEEEEEEEESTTC--
T ss_pred cccCCCCCCCEEEEEeC-----------CcEEEEECCCCCEEEEecCCC-----cccCEEECCCCCEEEEEEeeCCCC--
Confidence 357999 999999752 579999999999999998876 356789999999999985432111
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-c-------eEEeeeeCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-A-------VYTAVEPSP 184 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~-------~~~~~~~Sp 184 (751)
...+||++++ +|+.++|+.. . ....+.|||
T Consensus 66 -----------------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp 104 (281)
T d1k32a2 66 -----------------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP 104 (281)
T ss_dssp -----------------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT
T ss_pred -----------------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCC
Confidence 2258999999 6688888765 1 234678999
Q ss_pred CCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEecc
Q 004475 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (751)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~ 264 (751)
||+.|+|+...... .....++.++.+++..+...... ....|.++|.. +++.....
T Consensus 105 dg~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~~~~~~ 160 (281)
T d1k32a2 105 DGNLIISTDAMQPF-------SSMTCLYRVENDGINFVPLNLGP----------------ATHILFADGRR-VIGRNTFE 160 (281)
T ss_dssp TCCEEEEECTTSSS-------TTCCEEEEEEGGGTEEEECCSCS----------------CSEEEEETTEE-EEEESCSC
T ss_pred CCCEEEEEEccCCC-------ccceeeeeecCCCceeEEecCCc----------------cceeeecCCCe-EEEeeccc
Confidence 99999997654321 11245677888777665442221 13478888887 44433222
Q ss_pred CCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
.................... ......++....... +.++++ .+++.... ....+||+++++++ ..++|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~~d~~g~--~~~~lt~~ 232 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEVN---SGAFKKIVDMSTHVSSPVIVGH--RIYFITDI-DGFGQIYSTDLDGK--DLRKHTSF 232 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEEE---TTEEEEEECCSSCCEEEEEETT--EEEEEECT-TSSCEEEEEETTSC--SCEECCCC
T ss_pred cceeeeeccCCcceeeeecc---ccceeeccCCccccceeeeecc--ccceeccc-ccccceEEEeCCCC--ceEEeecC
Confidence 11111000011111111111 122233333344444 777765 45554433 34578999999984 66777754
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
.... ...|||||+.|+|... ..||++|+++|+.++|.-
T Consensus 233 ~~~~--------~~~~SpDG~~I~f~~~----------------------~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 233 TDYY--------PRHLNTDGRRILFSKG----------------------GSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp CSSC--------EEEEEESSSCEEEEET----------------------TEEEEECTTTCCEEECCC
T ss_pred CCcc--------cccCcCCCCEEEEEeC----------------------CEEEEEECCCCCEEEecc
Confidence 3221 1569999999999761 269999999999988854
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.84 E-value=2.4e-20 Score=182.05 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=147.8
Q ss_pred ceEEEEEEcCCC-ceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~-~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
....+++....+ ....+.+|+|.+.. ++++|+||++||.+ +.... ...++..|+++||+|+
T Consensus 22 ~~~~~~~~~~~~~g~~~~~ly~P~~~~---~g~~P~Vv~~HG~~-----------g~~~~----~~~~a~~lA~~Gy~V~ 83 (260)
T d1jfra_ 22 ATSQTSVSSLVASGFGGGTIYYPTSTA---DGTFGAVVISPGFT-----------AYQSS----IAWLGPRLASQGFVVF 83 (260)
T ss_dssp CEEEEEECTTTCSSSCCEEEEEESCCT---TCCEEEEEEECCTT-----------CCGGG----TTTHHHHHHTTTCEEE
T ss_pred ceeEEEeccCCcCcccCEEEEEcCCCC---CCCccEEEEECCCC-----------CCHHH----HHHHHHHHHhCCCEEE
Confidence 344455543222 23457899997632 34699999999964 11121 2356789999999999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 634 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~----~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 634 (751)
+++. .+.+.. ......|+..+++++.+. ..+|.+||+++|||+||.+++.++...+ +++++|+++|
T Consensus 84 ~~d~---~~~~~~------~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~ 153 (260)
T d1jfra_ 84 TIDT---NTTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTG 153 (260)
T ss_dssp EECC---SSTTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESC
T ss_pred EEee---CCCcCC------chhhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeec
Confidence 9554 343221 234467788888998874 4589999999999999999999999884 6888898888
Q ss_pred CCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC
Q 004475 635 SYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF 714 (751)
Q Consensus 635 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~ 714 (751)
.... ....++++|+|++||+.|.++| +....+.+..+...+.+++++++++
T Consensus 154 ~~~~---------------------------~~~~~~~~P~l~i~G~~D~~vp--~~~~~~~~~~~~~~~~~~~~~~i~g 204 (260)
T d1jfra_ 154 WNTD---------------------------KTWPELRTPTLVVGADGDTVAP--VATHSKPFYESLPGSLDKAYLELRG 204 (260)
T ss_dssp CCSC---------------------------CCCTTCCSCEEEEEETTCSSSC--TTTTHHHHHHHSCTTSCEEEEEETT
T ss_pred cccc---------------------------ccccccccceeEEecCCCCCCC--HHHHHHHHHHhcccCCCEEEEEECC
Confidence 5321 1234578999999999999998 6654444434444567889999999
Q ss_pred CCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 715 EHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 715 ~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
++|.+.... .....+.++.||+.+|+.+
T Consensus 205 a~H~~~~~~-~~~~~~~~~~wl~~~L~~d 232 (260)
T d1jfra_ 205 ASHFTPNTS-DTTIAKYSISWLKRFIDSD 232 (260)
T ss_dssp CCTTGGGSC-CHHHHHHHHHHHHHHHSCC
T ss_pred CccCCCCCC-hHHHHHHHHHHHHHHhcCc
Confidence 999876443 3467778899999998864
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.84 E-value=3e-20 Score=178.46 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=147.3
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.|.|.|++.+|..+.+++..|.+ +++|+||++|++. + ........+..|+++||.|+++
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~------~~~P~vl~~h~~~-G--------------~~~~~~~~a~~lA~~Gy~vl~p 61 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIF-G--------------VNAFMRETVSWLVDQGYAAVCP 61 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS------SSEEEEEEECCTT-B--------------SCHHHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEECCCC------CCceEEEEeCCCC-C--------------CCHHHHHHHHHHHhcCCcceee
Confidence 45678899999999999999964 3699999999742 0 1111124567889999999997
Q ss_pred CCCCCCCCCCCCCCch--------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 004475 561 PSIPIIGEGDKLPNDR--------------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 626 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~~--------------~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~ 626 (751)
|.++..+.+....... .......|+..+++++.+.+. +..||+++|+|+||.+++.++... .+
T Consensus 62 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~--~~ 138 (233)
T d1dina_ 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKG--YV 138 (233)
T ss_dssp CGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHT--CS
T ss_pred eeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeeccccc--cc
Confidence 7654333322211111 123346788999999988764 557999999999999999988775 35
Q ss_pred eEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCc
Q 004475 627 CCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 706 (751)
Q Consensus 627 ~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~ 706 (751)
.+++++.+... .++...+.++++|+|++||++|+.+| .+..+.+.+.++ .+++
T Consensus 139 ~~~~~~~~~~~------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp--~e~~~~~~~~~~-~~~~ 191 (233)
T d1dina_ 139 DRAVGYYGVGL------------------------EKQLNKVPEVKHPALFHMGGQDHFVP--APSRQLITEGFG-ANPL 191 (233)
T ss_dssp SEEEEESCSCG------------------------GGGGGGGGGCCSCEEEEEETTCTTSC--HHHHHHHHHHHT-TCTT
T ss_pred ceecccccccc------------------------ccchhhhhccCCcceeeecccccCCC--HHHHHHHHHHHh-cCCC
Confidence 56666554210 01123355688999999999999998 888887777664 5788
Q ss_pred EEEEEeCCCCCcCCccc-------cHHHHHHHHHHHHHH
Q 004475 707 SRLVLLPFEHHVYAARE-------NVMHVIWETDRWLQK 738 (751)
Q Consensus 707 ~~~~~~~~~~H~~~~~~-------~~~~~~~~~~~fl~~ 738 (751)
+++++||+++|+|.... .....++++++||..
T Consensus 192 ~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 192 LQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 99999999999985322 123457788899864
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.84 E-value=6e-20 Score=183.57 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=149.3
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
+....++..+|..+++|.+.|.+..+. +.|+||++||.+.. ......++..|+++||+|++
T Consensus 4 ~~~h~~~~~dg~~l~~w~~~p~~~~~~---~~~~Vvi~HG~~~~---------------~~~~~~~a~~L~~~G~~Vi~- 64 (302)
T d1thta_ 4 TIAHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFARR---------------MDHFAGLAEYLSTNGFHVFR- 64 (302)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCGG---------------GGGGHHHHHHHHTTTCCEEE-
T ss_pred eeeeEEEcCCCCEEEEEEecCcCCCCC---CCCEEEEeCCCcch---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 345566778999999999999764332 47899999996411 11233567899999999999
Q ss_pred CCCCCCCC-CCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004475 561 PSIPIIGE-GDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 637 (751)
Q Consensus 561 ~~~~~~g~-g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d 637 (751)
++++|+ |.+.. .........+|+..+++++.++. .++|+|+||||||.+|+.+|.. ..++++|+.+|+.+
T Consensus 65 --~D~rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~ 137 (302)
T d1thta_ 65 --YDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVN 137 (302)
T ss_dssp --ECCCBCC--------CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSC
T ss_pred --ecCCCCCCCCCCcccCCCHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeeccccc
Confidence 455554 44432 22335567899999999998764 4689999999999999887764 35889999998765
Q ss_pred CCCC----------ccC---ccccc----ccchh---hHHHHHhc-----CcccccCCCCCCEEEEEcCCCCCCCCChHH
Q 004475 638 KTLT----------PFG---FQTEF----RTLWE---ATNVYIEM-----SPITHANKIKKPILIIHGEVDDKVGLFPMQ 692 (751)
Q Consensus 638 ~~~~----------~~~---~~~~~----~~~~~---~~~~~~~~-----~~~~~~~~~~~P~li~~G~~D~~vp~~~~~ 692 (751)
.... ... ..... ..... ..+.+... ++...++++++|+|++||++|.+|| ++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~--~~~ 215 (302)
T d1thta_ 138 LRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVK--QEE 215 (302)
T ss_dssp HHHHHHHHHSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSC--HHH
T ss_pred HHHHHHHHHhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccC--HHH
Confidence 2100 000 00000 00000 00001100 1344678899999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc-HHHHHHHHHHHHH
Q 004475 693 AERFFDALKGHGALSRLVLLPFEHHVYAAREN-VMHVIWETDRWLQ 737 (751)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~fl~ 737 (751)
++++++.++. .++++++++|++|.+..... ...+++.+..+..
T Consensus 216 ~~~l~~~i~s--~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~ 259 (302)
T d1thta_ 216 VYDMLAHIRT--GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAI 259 (302)
T ss_dssp HHHHHTTCTT--CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CCceEEEecCCCcccccChHHHHHHHHHHHHHHh
Confidence 9988887753 36899999999998753222 2334455555543
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.83 E-value=3.8e-20 Score=189.76 Aligned_cols=244 Identities=13% Similarity=0.007 Sum_probs=163.0
Q ss_pred CccCCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC
Q 004475 475 TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554 (751)
Q Consensus 475 ~~~~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 554 (751)
....+..+..++++.+|..|.+.+|.|++. ++++|+|||+|||||..++. ... .....+..++++|
T Consensus 73 ~~~~v~~~~~~i~~~dg~~i~~~iy~P~~~----~~~~Pviv~~HGGG~~~gs~--------~~~--~~~~~~~~la~~g 138 (358)
T d1jkma_ 73 DRDDVETSTETILGVDGNEITLHVFRPAGV----EGVLPGLVYTHGGGMTILTT--------DNR--VHRRWCTDLAAAG 138 (358)
T ss_dssp CCCCEEEEEEEEECTTSCEEEEEEEEETTC----CSCEEEEEEECCSTTTSSCS--------SSH--HHHHHHHHHHHTT
T ss_pred CCCCccEEEEEEeCCCCCEEEEEEEecCCC----CCCCCeEEEecCCeeeeccc--------ccc--ccchHHHHHHhhh
Confidence 345577888899999999999999999863 34689999999998754321 110 0123566788999
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeE
Q 004475 555 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCC 628 (751)
Q Consensus 555 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~-~~id~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~ 628 (751)
++|+.++|+...+.. +...+...++|+.++++|+.++ ..+|++||+|+|.|.||++|+.++... ...+.+
T Consensus 139 ~~VvsvdYRla~~~~----pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~ 214 (358)
T d1jkma_ 139 SVVVMVDFRNAWTAE----GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDG 214 (358)
T ss_dssp CEEEEEECCCSEETT----EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSE
T ss_pred heeeeeeeccccccc----ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccc
Confidence 999997775432211 1122345689999999999875 346788999999999999998877542 245788
Q ss_pred EEEccCCCCCCCCccCcccc--------cccch---hhHHHH-Hh--------cCccccc-------CCCCCCEEEEEcC
Q 004475 629 GIARSGSYNKTLTPFGFQTE--------FRTLW---EATNVY-IE--------MSPITHA-------NKIKKPILIIHGE 681 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~--------~~~~~---~~~~~~-~~--------~~~~~~~-------~~~~~P~li~~G~ 681 (751)
.++..|..+........... ....+ .....+ .. .++.... -+--+|+||++|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~ 294 (358)
T d1jkma_ 215 VYASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNE 294 (358)
T ss_dssp EEEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEET
T ss_pred cccccceeccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECC
Confidence 88888876643221110000 00000 000001 00 0111100 0112699999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc------cccHHHHHHHHHHHHHHHh
Q 004475 682 VDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA------RENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 682 ~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~------~~~~~~~~~~~~~fl~~~l 740 (751)
.|.+ ..++..++++|+++|+++++++|++..|+|.. .+..++.++.+..|+..+.
T Consensus 295 ~D~l----~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 295 LDPL----RDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp TCTT----HHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----HHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 9976 57889999999999999999999999998632 1234556788888987764
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.83 E-value=1.7e-19 Score=182.41 Aligned_cols=238 Identities=18% Similarity=0.147 Sum_probs=154.1
Q ss_pred ccCCceEEEEEEcCCCc-eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-C
Q 004475 476 LASLQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-R 553 (751)
Q Consensus 476 ~~~~~~e~i~~~~~~~~-~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 553 (751)
...+..++++++..+|. .+.+++|.|++. .+++|+||++|||||..++. .. .......++. .
T Consensus 45 ~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~----~~~~Pvvv~iHGGG~~~g~~--------~~----~~~~~~~la~~~ 108 (317)
T d1lzla_ 45 FDGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTA--------ES----SDPFCVEVAREL 108 (317)
T ss_dssp CTTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCG--------GG----GHHHHHHHHHHH
T ss_pred CCCceEEEEEEecCCCCceEEEEEECCCCC----CCCCcEEEEecCcccccccc--------cc----cchHHHhHHhhc
Confidence 34567789999988875 699999999762 34689999999998754332 11 1234455554 6
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ce
Q 004475 554 RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LF 626 (751)
Q Consensus 554 G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~ 626 (751)
||+|+.++|+.... ......++|+..+++|+.++ ..+|++||+|+|+|+||++++.++.+.++ ..
T Consensus 109 G~~V~~vdYrl~pe--------~~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~ 180 (317)
T d1lzla_ 109 GFAVANVEYRLAPE--------TTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPV 180 (317)
T ss_dssp CCEEEEECCCCTTT--------SCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCcccccccccccc--------ccccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccc
Confidence 99999977753221 12245678888888888764 34889999999999999999998875422 12
Q ss_pred eEEEEccCCCCCCCCccCccc-ccccchhhH------HHHH--------------hcCccccc-CCCCCCEEEEEcCCCC
Q 004475 627 CCGIARSGSYNKTLTPFGFQT-EFRTLWEAT------NVYI--------------EMSPITHA-NKIKKPILIIHGEVDD 684 (751)
Q Consensus 627 ~~~v~~~~~~d~~~~~~~~~~-~~~~~~~~~------~~~~--------------~~~~~~~~-~~~~~P~li~~G~~D~ 684 (751)
...++..+..+.......... .....+... ..+. ..++.... ....+|+|+++|+.|.
T Consensus 181 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~ 260 (317)
T d1lzla_ 181 AFQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP 260 (317)
T ss_dssp CEEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCT
T ss_pred cccccccccccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCC
Confidence 333333333221111000000 000000000 0000 00111111 1224799999999996
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc---HHHHHHHHHHHHHHHhc
Q 004475 685 KVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN---VMHVIWETDRWLQKYCL 741 (751)
Q Consensus 685 ~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l~ 741 (751)
+ ..+++.++++|+++|+++++++||+++|+|..... ..+...++++||.++|+
T Consensus 261 l----~~~~~~~~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 261 L----RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp T----HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred C----HHHHHHHHHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 4 67899999999999999999999999998854332 34567788999999886
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.82 E-value=3.3e-19 Score=173.02 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=142.1
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 570 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~ 570 (751)
+......+|+|++ .+.|+||++|||+|..++.. .+ ...+..|+++||+|+.++|+...
T Consensus 47 ~~~~~lDiy~P~~------~~~P~vv~iHGG~w~~g~~~--------~~----~~~a~~l~~~G~~Vv~~~YRl~p---- 104 (261)
T d2pbla1 47 GDRHKFDLFLPEG------TPVGLFVFVHGGYWMAFDKS--------SW----SHLAVGALSKGWAVAMPSYELCP---- 104 (261)
T ss_dssp STTCEEEEECCSS------SCSEEEEEECCSTTTSCCGG--------GC----GGGGHHHHHTTEEEEEECCCCTT----
T ss_pred CcCeEEEEeccCC------CCCCeEEEECCCCCccCChh--------Hh----hhHHHHHhcCCceeecccccccc----
Confidence 3344667888865 24799999999988654321 11 23467789999999997775221
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC------CceeEEEEccCCCCCCCCccC
Q 004475 571 KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP------HLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 571 ~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~~~~d~~~~~~~ 644 (751)
.......++|+.++++|+.++. ++||+|+|||+||++|++++.... ..++++++++|+++.......
T Consensus 105 ----~~~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (261)
T d2pbla1 105 ----EVRISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT 177 (261)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS
T ss_pred ----cccCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhh
Confidence 1234677899999999999874 479999999999999988876542 248899999998875432211
Q ss_pred cccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 004475 645 FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 718 (751)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 718 (751)
..........+.+...||+.++.+..+|+|++||++|..++ ..++++++++++ ++.+++++.+|.
T Consensus 178 --~~~~~~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~--~~qs~~~~~~l~-----~~~~~~~~~~HF 242 (261)
T d2pbla1 178 --SMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF--LDQAIWLVEAWD-----ADHVIAFEKHHF 242 (261)
T ss_dssp --TTHHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHH--HHHHHHHHHHHT-----CEEEEETTCCTT
T ss_pred --hhcccccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchH--HHHHHHHHHHhC-----CCceEeCCCCch
Confidence 11112223466778889999999999999999999999888 899999999884 467889999993
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.81 E-value=3.4e-19 Score=183.85 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=139.7
Q ss_pred ccceeecC-CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 33 ~~~p~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
...+.||| ||++|||++ ..+||++++++++.+++++.. .+..++|||||++|++.+...
T Consensus 5 ~~~~~fSP~dG~~~a~~~-----------~g~v~v~d~~~~~~~~~~~~~------~v~~~~~spDg~~l~~~~~~~--- 64 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVS-----------RGQAFIQDVSGTYVLKVPEPL------RIRYVRRGGDTKVAFIHGTRE--- 64 (360)
T ss_dssp GGEEEEEECGGGCEEEEE-----------TTEEEEECTTSSBEEECSCCS------CEEEEEECSSSEEEEEEEETT---
T ss_pred hhcccccCCCCCEEEEEE-----------CCeEEEEECCCCcEEEccCCC------CEEEEEECCCCCEEEEEEcCC---
Confidence 34578999 999999964 268999999999999986433 378899999999999985421
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceE
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i 189 (751)
...|+++++ +|+.+++..+ ..+..++|||||++|
T Consensus 65 --------------------------------------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l 100 (360)
T d1k32a3 65 --------------------------------------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100 (360)
T ss_dssp --------------------------------------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred --------------------------------------------CCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence 136889999 6688888877 778899999999999
Q ss_pred EEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCc
Q 004475 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (751)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~ 269 (751)
++.... ..+++|+.++++...+.... ......++|||||++ |++.........
T Consensus 101 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~spdg~~-la~~~~~~~~~~- 153 (360)
T d1k32a3 101 VVANDR-------------FEIMTVDLETGKPTVIERSR------------EAMITDFTISDNSRF-IAYGFPLKHGET- 153 (360)
T ss_dssp EEEETT-------------SEEEEEETTTCCEEEEEECS------------SSCCCCEEECTTSCE-EEEEEEECSSTT-
T ss_pred ceeccc-------------cccccccccccceeeeeecc------------cccccchhhccceee-eeeeccccccce-
Confidence 987544 36889999887765543321 122457899999999 776554332211
Q ss_pred cccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
.......++++++. ++....++....... +.|||||+.|++.+.
T Consensus 154 -~~~~~~~~~v~d~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 154 -DGYVMQAIHVYDME---GRKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp -CSCCEEEEEEEETT---TTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred -eeccccceeeeccc---cCceeeecccccccccccccCCCCEEEEEeC
Confidence 22233578888875 445555566666666 899999999998774
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=4e-19 Score=171.90 Aligned_cols=221 Identities=19% Similarity=0.142 Sum_probs=142.8
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+.+|++++. | +......|.+ +.|+||++||.+. ....+ ..++..|+++||+|+
T Consensus 3 ~~~~~~~l~---g--~~~~~~~p~~-------~~~~vl~lHG~~~-----------~~~~~----~~~~~~la~~G~~V~ 55 (238)
T d1ufoa_ 3 VRTERLTLA---G--LSVLARIPEA-------PKALLLALHGLQG-----------SKEHI----LALLPGYAERGFLLL 55 (238)
T ss_dssp EEEEEEEET---T--EEEEEEEESS-------CCEEEEEECCTTC-----------CHHHH----HHTSTTTGGGTEEEE
T ss_pred EEEEEEEEC---C--EEEEecCCCC-------CCeEEEEeCCCCC-----------CHHHH----HHHHHHHHHCCCEEE
Confidence 456666653 3 4556666654 3699999999641 11111 123446788999999
Q ss_pred EcCCCCCCCCCCCCC------CchhHHHHH----HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 559 AGPSIPIIGEGDKLP------NDRFVEQLV----SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~------~~~~~~~~~----~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
++|. +|+|.+.. ...+..... .++..+...+.....++..+++++|+|+||.+++.+++.+|+ +++
T Consensus 56 ~~D~---~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~ 131 (238)
T d1ufoa_ 56 AFDA---PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRG 131 (238)
T ss_dssp ECCC---TTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSC
T ss_pred EecC---CCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcc-hhh
Confidence 9544 45554421 112222222 223333334444455678899999999999999999999975 455
Q ss_pred EEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCC-CCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCC--
Q 004475 629 GIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA-- 705 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~-- 705 (751)
+++..+........ ............+.+.++.....+ .++|+|++||++|..+| +.++.+++++|++.+.
T Consensus 132 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~--~~~~~~~~~~l~~~~~~~ 205 (238)
T d1ufoa_ 132 VLAFIGSGFPMKLP----QGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVP--LARMEKTLEALRPHYPEG 205 (238)
T ss_dssp EEEESCCSSCCCCC----TTCCCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTT--HHHHHHHHHHHGGGCTTC
T ss_pred eeeeeeeccccccc----cccccccccccchhhhhhhhhhhhhcCCCeEEEEcCCCCccC--HHHHHHHHHHHHhcCCCc
Confidence 55555443322111 111111222334445555554433 46899999999999999 9999999999988765
Q ss_pred cEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 706 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 706 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
.+++.+++|++|.+.. +..+.+.+||.++|.
T Consensus 206 ~~~~~~~~g~gH~~~~-----~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 206 RLARFVEEGAGHTLTP-----LMARVGLAFLEHWLE 236 (238)
T ss_dssp CEEEEEETTCCSSCCH-----HHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCccCH-----HHHHHHHHHHHHHhc
Confidence 4788999999998752 456788899999885
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=1.3e-18 Score=163.31 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=135.8
Q ss_pred EEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCC-----
Q 004475 498 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL----- 572 (751)
Q Consensus 498 ~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~----- 572 (751)
++.|.. ..++|+||++||+|. +...+ ..+...+ ..++.|++++.....+.+...
T Consensus 5 i~~~~~-----~~~~P~vi~lHG~g~-----------~~~~~----~~~~~~l-~~~~~vv~p~~~~~~~~~~~~~~~~~ 63 (202)
T d2h1ia1 5 VFQKGK-----DTSKPVLLLLHGTGG-----------NELDL----LPLAEIV-DSEASVLSVRGNVLENGMPRFFRRLA 63 (202)
T ss_dssp EEECCS-----CTTSCEEEEECCTTC-----------CTTTT----HHHHHHH-HTTSCEEEECCSEEETTEEESSCEEE
T ss_pred cCCCCC-----CCCCCEEEEECCCCC-----------CHHHH----HHHHHHh-ccCCceeeecccccCCCCccccccCC
Confidence 455644 345799999999641 11111 1233344 467888775432111110000
Q ss_pred C---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccc
Q 004475 573 P---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF 649 (751)
Q Consensus 573 ~---~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~ 649 (751)
. .........+++...++++.++..+|+++|+++|+|+||.+++.+++.+|+.+.++++.+|.......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~~-------- 135 (202)
T d2h1ia1 64 EGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGM-------- 135 (202)
T ss_dssp TTEECHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSC--------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcccc--------
Confidence 0 11112334567778888888888899999999999999999999999999999999999987542111
Q ss_pred ccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHH
Q 004475 650 RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 729 (751)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 729 (751)
.......+|++++||++|++|| +..+++++++|++.+.++++++||+ +|.+. .+.+
T Consensus 136 ----------------~~~~~~~~~~~i~~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~ 191 (202)
T d2h1ia1 136 ----------------QLANLAGKSVFIAAGTNDPICS--SAESEELKVLLENANANVTMHWENR-GHQLT-----MGEV 191 (202)
T ss_dssp ----------------CCCCCTTCEEEEEEESSCSSSC--HHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHH
T ss_pred ----------------cccccccchhhcccccCCCccC--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHH
Confidence 1123356899999999999999 9999999999999999999999997 79874 3567
Q ss_pred HHHHHHHHHHh
Q 004475 730 WETDRWLQKYC 740 (751)
Q Consensus 730 ~~~~~fl~~~l 740 (751)
+.+.+||++.+
T Consensus 192 ~~~~~wl~k~f 202 (202)
T d2h1ia1 192 EKAKEWYDKAF 202 (202)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88999999864
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.80 E-value=4.4e-19 Score=182.00 Aligned_cols=237 Identities=21% Similarity=0.196 Sum_probs=166.2
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+.+.++..||.++.+.+|+|.+ .+++|+||+.||.|.... ... .........|+++||+|+.
T Consensus 6 ~~v~ipmrDGv~L~~~vy~P~~-----~~~~P~il~~~pyg~~~~----------~~~-~~~~~~~~~~a~~GY~vv~-- 67 (347)
T d1ju3a2 6 SNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFDV----------FAW-STQSTNWLEFVRDGYAVVI-- 67 (347)
T ss_dssp EEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTCC----------HHH-HTTSCCTHHHHHTTCEEEE--
T ss_pred eCeEEECCCCCEEEEEEEEcCC-----CCCEEEEEEEcCCCCccc----------cCc-CcccHHHHHHHHCCCEEEE--
Confidence 5588999999999999999975 457999999998541100 000 0111235678999999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 562 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 562 ~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+.+|.|.+............|..++++|+.++++.| .||+++|+|+||++++.+|+..|..+++++..++..|....
T Consensus 68 -~d~RG~g~S~G~~~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~ 145 (347)
T d1ju3a2 68 -QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRA 145 (347)
T ss_dssp -EECTTSTTCCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCC
T ss_pred -EeeCCccccCCccccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhh
Confidence 5555666665443333445678889999999999877 69999999999999999999999999999999998774321
Q ss_pred ccCccc-----ccc------------------------------------------------------cch---------
Q 004475 642 PFGFQT-----EFR------------------------------------------------------TLW--------- 653 (751)
Q Consensus 642 ~~~~~~-----~~~------------------------------------------------------~~~--------- 653 (751)
...... ... .+|
T Consensus 146 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (347)
T d1ju3a2 146 PWYGPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP 225 (347)
T ss_dssp CCSCTTCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCC
T ss_pred hhhhcCCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcc
Confidence 110000 000 000
Q ss_pred hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC------------c
Q 004475 654 EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA------------A 721 (751)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~------------~ 721 (751)
...+.+.+.++...+.++++|+|+++|..|..+ ..+.+.+++++. +.+.++++-|. +|... .
T Consensus 226 ~~~~~w~~~~~~~~~~~i~vP~L~i~G~~D~~~----~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~ 299 (347)
T d1ju3a2 226 DNDESWQSISLFERLGGLATPALITAGWYDGFV----GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAA 299 (347)
T ss_dssp SCCHHHHTTCCHHHHTTCCCCEEEEEEEECTTH----HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGG
T ss_pred cchhhhhcCCHHHHhhcCCCCEEEeccccCCCc----chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccc
Confidence 001234455667778899999999999999874 456778887764 45778888876 35421 1
Q ss_pred cccHHHHHHHHHHHHHHHhcCCC
Q 004475 722 RENVMHVIWETDRWLQKYCLSNT 744 (751)
Q Consensus 722 ~~~~~~~~~~~~~fl~~~l~~~~ 744 (751)
.....+....+++||+++|+...
T Consensus 300 ~~~~~~~~~~~l~wfD~~LKg~~ 322 (347)
T d1ju3a2 300 TYPIQEATTMHKAFFDRHLRGET 322 (347)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCT
T ss_pred cccHHHHHHHHHHHHHHHhCCCC
Confidence 12345677788999999998543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=8.8e-18 Score=180.30 Aligned_cols=331 Identities=11% Similarity=0.015 Sum_probs=198.8
Q ss_pred CCcceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
++..++|++|+.+ |+.+.++..+. .+..|+|||||++|||++. .+||+++..+|+..+++...
T Consensus 89 s~~~~~~l~d~~~----~~~~~l~~~~~--~~~~~~~SPDG~~ia~~~~-----------~~l~~~~~~~g~~~~~t~~~ 151 (470)
T d2bgra1 89 SYTASYDIYDLNK----RQLITEERIPN--NTQWVTWSPVGHKLAYVWN-----------NDIYVKIEPNLPSYRITWTG 151 (470)
T ss_dssp CEEEEEEEEETTT----TEECCSSCCCT--TEEEEEECSSTTCEEEEET-----------TEEEEESSTTSCCEECCSCC
T ss_pred ccCceEEEEECCC----CcccccccCCc--cccccccccCcceeeEeec-----------ccceEEECCCCceeeeeecc
Confidence 5677899999999 99998885544 4789999999999999753 68999999999998887654
Q ss_pred Cccc--c------------ceeeeeEEecCCcEEEEeecCCCCCCCC-----CCCCCCCCceeeccccccccchhhhhcc
Q 004475 82 DICL--N------------AVFGSFVWVNNSTLLIFTIPSSRRDPPK-----KTMVPLGPKIQSNEQKNIIISRMTDNLL 142 (751)
Q Consensus 82 ~~~~--~------------~~~~~~~wspDg~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (751)
.... + .....+.|||||++|+|...+....... .......+......
T Consensus 152 ~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~-------------- 217 (470)
T d2bgra1 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP-------------- 217 (470)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE--------------
T ss_pred CCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec--------------
Confidence 3210 1 1123577999999999997654322100 00000000000000
Q ss_pred CCccchhhhhhheeeEEEEEcC-CCCceec------------CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCc
Q 004475 143 KDEYDESLFDYYTTAQLVLGSL-DGTAKDF------------GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFS 208 (751)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~-~G~~~~l------------t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~ 208 (751)
++..+ .......++++++ ++....+ ... ..+..+.|+++++.+++....... ...
T Consensus 218 -~~~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~-------~~~ 286 (470)
T d2bgra1 218 -YPKAG---AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-------YSV 286 (470)
T ss_dssp -CCBTT---SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-------EEE
T ss_pred -ccccc---ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC-------ceE
Confidence 00000 0002256788888 4422211 111 345678999999877665443211 012
Q ss_pred eeEEEEeCCCceeeeeccCCCCCCC-CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC
Q 004475 209 QKVQVWTTDGKLVRELCDLPPAEDI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (751)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (751)
..++.+|..++....+......... ...+.. .......|+++++..+++.+.. +...+||+++.+
T Consensus 287 ~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~s~~---------dg~~~ly~~~~~--- 352 (470)
T d2bgra1 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGR--FRPSEPHFTLDGNSFYKIISNE---------EGYRHICYFQID--- 352 (470)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSS--SSCCCCEECTTSSEEEEEEECT---------TSCEEEEEEETT---
T ss_pred EEEEEecCCCCcEEEEEEEeeeeeeccceeec--ccCCCceeeecCCCcEEEEecc---------CcCceeEEEecc---
Confidence 3466677777766655332111000 001110 1123457888888755665422 223589999986
Q ss_pred CCCceEeEeeceeEEEEEecCCceEEEeeeec---ccceeEEEecCCCCCCcceeeeecc---cccccCCCCCCCeeeCC
Q 004475 288 GEKPEILHKLDLRFSVSWCDDSLALVNETWYK---TSQTRTWLVCPGSKDVAPRVLFDRV---FENVYSDPGSPMMTRTS 361 (751)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~sp 361 (751)
++....++.+...+...+++|++.|+|.++.. +...+||.++++++ ...+.|+..- ...+.. ++|||
T Consensus 353 g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s------~~fSp 425 (470)
T d2bgra1 353 KKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQYYS------VSFSK 425 (470)
T ss_dssp CSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCBEE------EEECT
T ss_pred CCceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCC-CceeEecccccCCCCCEEE------EEECC
Confidence 77888888887777623677888998887532 24568999999885 4445554321 111122 78999
Q ss_pred CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeecc
Q 004475 362 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 413 (751)
Q Consensus 362 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 413 (751)
||++++..... ...+...+++..+|+..+++..+
T Consensus 426 dgky~~~~~s~------------------~~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 426 EAKYYQLRCSG------------------PGLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp TSSEEEEEECS------------------BSSCEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEecC------------------CCCCeEEEEECCCCCEEEEEecc
Confidence 99998887732 12345677888888887776554
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=5.1e-19 Score=177.77 Aligned_cols=226 Identities=17% Similarity=0.058 Sum_probs=153.6
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEE
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~ 558 (751)
.++.++++..++ .+.+.+|.|+. +.|+||++|||||..++. ..+ ...+..++ ..|++|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~iy~P~~-------~~P~il~iHGGg~~~g~~--------~~~----~~~~~~l~~~~g~~Vv 114 (311)
T d1jjia_ 55 RVEDRTIKGRNG-DIRVRVYQQKP-------DSPVLVYYHGGGFVICSI--------ESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEEESSS-------SEEEEEEECCSTTTSCCT--------GGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEEeCCCC-cEEEEEEcCCC-------CceEEEEEcCCCCccCCh--------hhh----hhhhhhhhhcCCcEEE
Confidence 467788887666 79999999964 369999999998764332 222 23444554 4699999
Q ss_pred EcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEE
Q 004475 559 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIA 631 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~---~~id~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~ 631 (751)
.++|+...++ .....++|+..+++|+.++ ..+|++||+++|+|+||++++.++... .....+.++
T Consensus 115 ~v~Yrlap~~--------~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l 186 (311)
T d1jjia_ 115 SVDYRLAPEH--------KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEECCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred Eecccccccc--------ccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeee
Confidence 9777533322 2245678888999999875 358899999999999999998886543 235688888
Q ss_pred ccCCCCCCCCccCccccc-cc-ch-----hhH-H---------HHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHH
Q 004475 632 RSGSYNKTLTPFGFQTEF-RT-LW-----EAT-N---------VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAE 694 (751)
Q Consensus 632 ~~~~~d~~~~~~~~~~~~-~~-~~-----~~~-~---------~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~ 694 (751)
++|..+............ .. .+ ... . .....+|+....+..+|+||++|+.|.+ ..++.
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l----~d~~~ 262 (311)
T d1jjia_ 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL----RDEGE 262 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT----HHHHH
T ss_pred ecceeeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC----hHHHH
Confidence 998877443211100000 00 00 000 0 0011245444434457999999999976 56789
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHH
Q 004475 695 RFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQ 737 (751)
Q Consensus 695 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~ 737 (751)
.++++|+++|+++++++|++++|+|... +...+.++++.+||.
T Consensus 263 ~~~~~L~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 263 VFGQMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987532 224566777788873
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=2.9e-17 Score=155.17 Aligned_cols=212 Identities=18% Similarity=0.179 Sum_probs=157.5
Q ss_pred EEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCC
Q 004475 484 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 484 i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~ 563 (751)
+.|+...| ++.+++..|.. .+.|++|++||.+... ++ .........+..|+++||.|+. +
T Consensus 3 v~i~g~~G-~Le~~~~~~~~------~~~~~~l~~Hp~p~~G--------G~--~~~~~~~~~a~~l~~~G~~~lr---f 62 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFG--------GT--MNNQIVYQLFYLFQKRGFTTLR---F 62 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGT--------CC--TTSHHHHHHHHHHHHTTCEEEE---E
T ss_pred EEEeCCCc-cEEEEEeCCCC------CCCCEEEEECCCcCcC--------Cc--CCcHHHHHHHHHHHhcCeeEEE---E
Confidence 56777776 79998765543 2368999999854211 11 1111112356678899999999 6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004475 564 PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 643 (751)
Q Consensus 564 ~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 643 (751)
+++|.|.+...........+|..++++|+..+...+ .++.++|+|+||.+++.++.+.+ ...++++..+......
T Consensus 63 n~RG~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~~--- 137 (218)
T d2i3da1 63 NFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTYD--- 137 (218)
T ss_dssp CCTTSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTSC---
T ss_pred ecCccCCCccccccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhc-cccceeeccccccccc---
Confidence 677887776655555677899999999999886533 57999999999999999998884 5566777766533211
Q ss_pred CcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCCcc
Q 004475 644 GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG-HGALSRLVLLPFEHHVYAAR 722 (751)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~ 722 (751)
...+....+|+|++||+.|.++| .....++++.++. ++..++++++|+++|.|.
T Consensus 138 ---------------------~~~~~~~~~p~l~i~g~~D~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~-- 192 (218)
T d2i3da1 138 ---------------------FSFLAPCPSSGLIINGDADKVAP--EKDVNGLVEKLKTQKGILITHRTLPGANHFFN-- 192 (218)
T ss_dssp ---------------------CTTCTTCCSCEEEEEETTCSSSC--HHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--
T ss_pred ---------------------hhhccccCCCceeeecccceecC--hHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--
Confidence 11234457899999999999999 9999999998876 456789999999999885
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCC
Q 004475 723 ENVMHVIWETDRWLQKYCLSNTS 745 (751)
Q Consensus 723 ~~~~~~~~~~~~fl~~~l~~~~~ 745 (751)
....++.+.+.+||+++|.....
T Consensus 193 g~~~~l~~~v~~~l~~~l~~~~~ 215 (218)
T d2i3da1 193 GKVDELMGECEDYLDRRLNGELV 215 (218)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCHHHHHHHHHHHHHHhcCCCCC
Confidence 45678899999999999976443
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.78 E-value=2.4e-18 Score=177.54 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=160.8
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
...+.+.++..||+++.+.+|+|++ .+++|+||+.|+.|...... .................|+++||+|+
T Consensus 22 ~~~~~v~i~~rDG~~L~~~v~~P~~-----~~~~P~il~~~pYg~~~~~~----~~~~~~~~~~~~~~~~~~a~~Gy~vv 92 (381)
T d1mpxa2 22 YIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDASGRTE----RLASPHMKDLLSAGDDVFVEGGYIRV 92 (381)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHHHTC----SSCCSSHHHHSCGGGHHHHHTTCEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEEeCC-----CCCccEEEEEccCCCCCccc----ccccccccccchhHHHHHHhCCCEEE
Confidence 3457799999999999999999976 45799999999754211100 00001111111234568899999999
Q ss_pred EcCCCCCCCCCCCCCCc-----------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 004475 559 AGPSIPIIGEGDKLPND-----------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~-----------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 627 (751)
.++.+ |.|.+.... ....+..+|..++++|+.++..++..||+++|+|+||++++.+|+..|..++
T Consensus 93 ~~d~R---G~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~ 169 (381)
T d1mpxa2 93 FQDVR---GKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALK 169 (381)
T ss_dssp EEECT---TSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEE
T ss_pred EEecC---ccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccc
Confidence 95554 444432210 1122457899999999999987888999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCccCcc----ccc----------------------ccchh---------------------------
Q 004475 628 CGIARSGSYNKTLTPFGFQ----TEF----------------------RTLWE--------------------------- 654 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~~----~~~----------------------~~~~~--------------------------- 654 (751)
++|+.+|+.|......... ... ...+.
T Consensus 170 a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (381)
T d1mpxa2 170 VAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLT 249 (381)
T ss_dssp EEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHH
T ss_pred eeeeeccccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHh
Confidence 9999999877432111000 000 00000
Q ss_pred ----hHHHHHhcCccc--ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh---CCCcEEEEEeCCCCCcCCc----
Q 004475 655 ----ATNVYIEMSPIT--HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG---HGALSRLVLLPFEHHVYAA---- 721 (751)
Q Consensus 655 ----~~~~~~~~~~~~--~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~~~---- 721 (751)
..+.+...++.. ...++++|+|+++|..|...+ ..+...++.+.. .+.+.++++-|. +|....
T Consensus 250 ~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~---~~~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~ 325 (381)
T d1mpxa2 250 EHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDM---WGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGS 325 (381)
T ss_dssp HTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCS---SHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCS
T ss_pred hCCCccchhhhcCchhhhhhccccCceEEEeccccCCcc---ccHHHHHHHHHHhccccCCceEEEecC-cCCCCccCCC
Confidence 001122223322 345689999999999998764 334555555543 456789999987 464211
Q ss_pred --------cc-cHHHHHHHHHHHHHHHhcCC
Q 004475 722 --------RE-NVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 722 --------~~-~~~~~~~~~~~fl~~~l~~~ 743 (751)
.+ ........+++||+++|+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~ 356 (381)
T d1mpxa2 326 ALGALNFEGDTARQFRHDVLRPFFDQYLVDG 356 (381)
T ss_dssp EETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred cCCccccccchhhhhHHHHHHHHHHHHhCCC
Confidence 11 12334556789999999853
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.78 E-value=1.7e-18 Score=174.40 Aligned_cols=233 Identities=18% Similarity=0.131 Sum_probs=151.4
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC-eEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~v 557 (751)
..++.+.++. +|.+|.+.+|.|++. ++++|+||++|||||..++. . .....+..++.+| +.|
T Consensus 44 ~~~~~~~~~~-~g~~i~~~~y~P~~~----~~~~Pvvv~iHGGg~~~g~~--------~----~~~~~~~~~a~~~~~~v 106 (308)
T d1u4na_ 44 AEVREFDMDL-PGRTLKVRMYRPEGV----EPPYPALVYYHGGGWVVGDL--------E----THDPVCRVLAKDGRAVV 106 (308)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEECTTC----CSSEEEEEEECCSTTTSCCT--------T----TTHHHHHHHHHHHTSEE
T ss_pred CcEEEEEEec-CCceEEEEEEecccc----CCCCCEEEEEecCeeeeecc--------c----cccchhhhhhhcccccc
Confidence 4467777764 678899999999763 33689999999998764332 1 1224456667665 556
Q ss_pred EEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEE
Q 004475 558 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGI 630 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~p~----~~~~~v 630 (751)
+.++|+.... .......+|+..+++|+.++. .+|++||+++|+|+||++++.++...++ .+.+..
T Consensus 107 ~~v~Yrl~p~--------~~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 178 (308)
T d1u4na_ 107 FSVDYRLAPE--------HKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQL 178 (308)
T ss_dssp EEECCCCTTT--------SCTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred cccccccccc--------cccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccc
Confidence 6666642221 223456789999999998753 5889999999999999999998876532 245555
Q ss_pred EccCCCCCCCCccCcc-cccc-----cchhh---HHHH---------HhcCcccccCCCC-CCEEEEEcCCCCCCCCChH
Q 004475 631 ARSGSYNKTLTPFGFQ-TEFR-----TLWEA---TNVY---------IEMSPITHANKIK-KPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 631 ~~~~~~d~~~~~~~~~-~~~~-----~~~~~---~~~~---------~~~~~~~~~~~~~-~P~li~~G~~D~~vp~~~~ 691 (751)
+..+..+......... .... ..... ...+ ...++....+... +|+||+||+.|.+ ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l----~~ 254 (308)
T d1u4na_ 179 LIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL----RD 254 (308)
T ss_dssp EESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT----HH
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc----hH
Confidence 5555443221110000 0000 00000 0000 0111221112222 5899999999965 56
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc----ccHHHHHHHHHHHHHHHh
Q 004475 692 QAERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 692 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l 740 (751)
+++.++++|+++|++++++++|+++|+|... +...+.++++.+||++.|
T Consensus 255 ~~~~~~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999987542 234577888999998876
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6e-18 Score=161.56 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHH
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 659 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 659 (751)
...+.+...++.+.+. .++.+||+++|+|+||.+|+.++.++|+.+++++++++....... +...
T Consensus 91 ~~~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~---~~~~----------- 155 (229)
T d1fj2a_ 91 QAAENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRAS---FPQG----------- 155 (229)
T ss_dssp HHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGG---SCSS-----------
T ss_pred HHHHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccc---cccc-----------
Confidence 3344445555555444 589999999999999999999999999999999999986421100 0000
Q ss_pred HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh--CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 660 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG--HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 660 ~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+ ......++|+|++||++|.+|| ...+++.++.|++ .+.++++++|++.+|.+.. +.+..+.+||+
T Consensus 156 ----~-~~~~~~~~Pvli~hG~~D~~vp--~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~~-----~~~~~~~~wL~ 223 (229)
T d1fj2a_ 156 ----P-IGGANRDISILQCHGDCDPLVP--LMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQ-----QEMMDVKQFID 223 (229)
T ss_dssp ----C-CCSTTTTCCEEEEEETTCSSSC--HHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCCH-----HHHHHHHHHHH
T ss_pred ----c-cccccccCceeEEEcCCCCeeC--HHHHHHHHHHHHhcCCCCceEEEEeCCCCCccCH-----HHHHHHHHHHH
Confidence 0 0112246899999999999999 9999999999987 4678999999999998752 55778999999
Q ss_pred HHhc
Q 004475 738 KYCL 741 (751)
Q Consensus 738 ~~l~ 741 (751)
++|.
T Consensus 224 ~~Lp 227 (229)
T d1fj2a_ 224 KLLP 227 (229)
T ss_dssp HHSC
T ss_pred hHCc
Confidence 9984
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.77 E-value=2.8e-17 Score=160.36 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=134.3
Q ss_pred ccCCceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC
Q 004475 476 LASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 554 (751)
Q Consensus 476 ~~~~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 554 (751)
.+....+++++.+. .+.++.+++|+|+++++++ ++|+|+++||++....+. .............+...+
T Consensus 17 ~~~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~--~~Pvvv~lHG~g~~~~~~--------~~~~~~~~~~~~~~~~~~ 86 (255)
T d1jjfa_ 17 VPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSENDW--------FEGGGRANVIADNLIAEG 86 (255)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCCTTTT--------TTTTTCHHHHHHHHHHTT
T ss_pred CCceEEEEEEEEecCCCCEEEEEEEeCCCCCCCC--CCcEEEEEecCCCChHHh--------hhhhHHHHHHHHHHHhhc
Confidence 33456788888864 5789999999999987655 599999999976322110 011111111122223222
Q ss_pred ----eEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc--CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 555 ----FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 555 ----~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~--~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
+.+...... . ................+.+++.++.++ ..+|+++|++.|+|+||.+|+.++.++|++|++
T Consensus 87 ~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~ 162 (255)
T d1jjfa_ 87 KIKPLIIVTPNTN---A-AGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAY 162 (255)
T ss_dssp SSCCCEEEEECCC---C-CCTTCSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSE
T ss_pred cCCcceeeecccc---c-ccccccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccE
Confidence 333332211 1 011111122222233344555666554 347889999999999999999999999999999
Q ss_pred EEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 004475 629 GIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~ 708 (751)
+++++|..+...... ..............|+++.||++|..++ ..++++++|++++.+++
T Consensus 163 v~~~sg~~~~~~~~~----------------~~~~~~~~~~~~~~~~~i~~G~~D~~~~----~~~~~~~~L~~~g~~~~ 222 (255)
T d1jjfa_ 163 IGPISAAPNTYPNER----------------LFPDGGKAAREKLKLLFIACGTNDSLIG----FGQRVHEYCVANNINHV 222 (255)
T ss_dssp EEEESCCTTSCCHHH----------------HCTTTTHHHHHHCSEEEEEEETTCTTHH----HHHHHHHHHHHTTCCCE
T ss_pred EEEEccCcCCccccc----------------ccccHHHHhhccCCcceEEeCCCCCCch----HHHHHHHHHHHCCCCEE
Confidence 999998754321100 0001111122345799999999999854 46789999999999999
Q ss_pred EEEeCCCCCcC
Q 004475 709 LVLLPFEHHVY 719 (751)
Q Consensus 709 ~~~~~~~~H~~ 719 (751)
+.++++++|.+
T Consensus 223 ~~~~~~ggH~~ 233 (255)
T d1jjfa_ 223 YWLIQGGGHDF 233 (255)
T ss_dssp EEEETTCCSSH
T ss_pred EEEECCCCcCH
Confidence 99999999985
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-19 Score=170.42 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=128.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..+.+..+.|.. ....|+||++||.+..+ ..|.. ......|+++||.|++ +|.+|+
T Consensus 13 v~G~~i~y~~~~~~~-----~~~~~~vvllHG~~~~~-----------~~w~~--~~~~~~la~~gy~via---~D~~G~ 71 (208)
T d1imja_ 13 VQGQALFFREALPGS-----GQARFSVLLLHGIRFSS-----------ETWQN--LGTLHRLAQAGYRAVA---IDLPGL 71 (208)
T ss_dssp ETTEEECEEEEECSS-----SCCSCEEEECCCTTCCH-----------HHHHH--HTHHHHHHHTTCEEEE---ECCTTS
T ss_pred ECCEEEEEEEecCCC-----CCCCCeEEEECCCCCCh-----------hHHhh--hHHHHHHHHcCCeEEE---eecccc
Confidence 478888888888854 22367899999964211 11110 0124578899999999 555676
Q ss_pred CCCCCCch---h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC
Q 004475 569 GDKLPNDR---F-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 569 g~~~~~~~---~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~ 644 (751)
|.+..... + .....+++.++++.+ +..+++|+||||||.+|+.++.++|++++++|+.+|......
T Consensus 72 G~S~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~~---- 141 (208)
T d1imja_ 72 GHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---- 141 (208)
T ss_dssp GGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----
T ss_pred cCCCCCCcccccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccccc----
Confidence 66533211 1 111123333444433 346899999999999999999999999999999988532110
Q ss_pred cccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcccc
Q 004475 645 FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 724 (751)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 724 (751)
....+.++++|+|+++|++|.++| ... +.+. .-...++.++++++|... .+.
T Consensus 142 -------------------~~~~~~~i~~P~Lii~G~~D~~~~--~~~-----~~~~-~~~~~~~~~i~~~gH~~~-~~~ 193 (208)
T d1imja_ 142 -------------------NAANYASVKTPALIVYGDQDPMGQ--TSF-----EHLK-QLPNHRVLIMKGAGHPCY-LDK 193 (208)
T ss_dssp -------------------CHHHHHTCCSCEEEEEETTCHHHH--HHH-----HHHT-TSSSEEEEEETTCCTTHH-HHC
T ss_pred -------------------ccccccccccccccccCCcCcCCc--HHH-----HHHH-hCCCCeEEEECCCCCchh-hhC
Confidence 011245688999999999999876 331 2222 235688999999999754 566
Q ss_pred HHHHHHHHHHHHHH
Q 004475 725 VMHVIWETDRWLQK 738 (751)
Q Consensus 725 ~~~~~~~~~~fl~~ 738 (751)
.+.+.+.+++||+.
T Consensus 194 p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 194 PEEWHTGLLDFLQG 207 (208)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 78899999999974
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.77 E-value=5.3e-18 Score=169.85 Aligned_cols=212 Identities=15% Similarity=0.071 Sum_probs=139.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.++.+|....+-+++ .|+||++||.|. ....|...+...|+++||.|++ ++.+|+
T Consensus 7 ~g~~~i~y~~~G~~~--------~p~vvl~HG~~~--------------~~~~~~~~~~~~l~~~g~~vi~---~D~~G~ 61 (297)
T d1q0ra_ 7 SGDVELWSDDFGDPA--------DPALLLVMGGNL--------------SALGWPDEFARRLADGGLHVIR---YDHRDT 61 (297)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTC--------------CGGGSCHHHHHHHHTTTCEEEE---ECCTTS
T ss_pred ECCEEEEEEEecCCC--------CCEEEEECCCCc--------------ChhHHHHHHHHHHHhCCCEEEE---EeCCCC
Confidence 467788887776543 588999999652 1222333456678899999999 566677
Q ss_pred CCCCCCc-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC--
Q 004475 569 GDKLPND-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-- 641 (751)
Q Consensus 569 g~~~~~~-----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~-- 641 (751)
|.+.... ....+..+|+..+++.+ +.+++.++||||||.+++.+|.++|++++++|++++.......
T Consensus 62 G~S~~~~~~~~~~~~~~~~~d~~~ll~~l------~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~ 135 (297)
T d1q0ra_ 62 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDA 135 (297)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHH
T ss_pred cccccccccccccccchhhhhhccccccc------cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchh
Confidence 7764321 13556666666666554 3468999999999999999999999999999998765321100
Q ss_pred -----------ccCccccc----------------------------------ccchhhHH-------HHH---------
Q 004475 642 -----------PFGFQTEF----------------------------------RTLWEATN-------VYI--------- 660 (751)
Q Consensus 642 -----------~~~~~~~~----------------------------------~~~~~~~~-------~~~--------- 660 (751)
........ ..++.... .+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T d1q0ra_ 136 NIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEP 215 (297)
T ss_dssp HHHHHHHTCCCSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCC
T ss_pred hhHHHhhhhhhhhhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhh
Confidence 00000000 00000000 000
Q ss_pred ---------hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHH
Q 004475 661 ---------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWE 731 (751)
Q Consensus 661 ---------~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 731 (751)
..+....++++++|+|+++|++|.++| +..++.+.+.+ ...++++++++||.+. .+...++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~l~~i~~Pvlvi~G~~D~~~~--~~~~~~~~~~~----p~~~~~~i~~~gH~~~-~e~p~~~~~~ 288 (297)
T d1q0ra_ 216 YAHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGLI----PTARLAEIPGMGHALP-SSVHGPLAEV 288 (297)
T ss_dssp CGGGGCCCCCGGGGGGGGGCCSCEEEEEETTCSSSC--TTHHHHHHHTS----TTEEEEEETTCCSSCC-GGGHHHHHHH
T ss_pred hhhhhhhhccccchhhhhccCCceEEEEeCCCCCCC--HHHHHHHHHhC----CCCEEEEECCCCCcch-hhCHHHHHHH
Confidence 001122456789999999999999998 88877776555 3568999999999875 5666777777
Q ss_pred HHHHHHH
Q 004475 732 TDRWLQK 738 (751)
Q Consensus 732 ~~~fl~~ 738 (751)
+++||+.
T Consensus 289 i~~~l~~ 295 (297)
T d1q0ra_ 289 ILAHTRS 295 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=2.3e-17 Score=163.58 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=152.9
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
+||++|+.+ |+.++||..+ ..+..|+|||||++|||+..++. .....+||++++.+|+.++||.......
T Consensus 22 dl~~~d~~~----g~~~~Lt~~~--~~~~~p~~SPDG~~iaf~~~~~~----~~~~~~i~~~~~~~g~~~~lt~~~~~~~ 91 (281)
T d1k32a2 22 DLWEHDLKS----GSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEIKRITYFSGKST 91 (281)
T ss_dssp EEEEEETTT----CCEEEEECSS--SEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred cEEEEECCC----CCEEEEecCC--CcccCEEECCCCCEEEEEEeeCC----CCCceEEEEEEecCCceEEeeecCCCcc
Confidence 799999999 9999998433 35789999999999999986432 1344789999999999999987764321
Q ss_pred c--ceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 86 N--AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 86 ~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
. .....+.|||||+.|+|........ ....++.++
T Consensus 92 ~~~~~~~~~~~spdg~~l~~~~~~~~~~-------------------------------------------~~~~~~~~~ 128 (281)
T d1k32a2 92 GRRMFTDVAGFDPDGNLIISTDAMQPFS-------------------------------------------SMTCLYRVE 128 (281)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSST-------------------------------------------TCCEEEEEE
T ss_pred CccccccccccCCCCCEEEEEEccCCCc-------------------------------------------cceeeeeec
Confidence 1 1234779999999999984432111 113566777
Q ss_pred CCC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccC
Q 004475 164 LDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (751)
Q Consensus 164 ~~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (751)
.++ ..+..... .....|++||+.+++.............. .................++.....
T Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------ 193 (281)
T d1k32a2 129 NDGINFVPLNLG--PATHILFADGRRVIGRNTFELPHWKGYRG-GTRGKIWIEVNSGAFKKIVDMSTH------------ 193 (281)
T ss_dssp GGGTEEEECCSC--SCSEEEEETTEEEEEESCSCCTTSTTCCS-TTCCEEEEEEETTEEEEEECCSSC------------
T ss_pred CCCceeEEecCC--ccceeeecCCCeEEEeeccccceeeeecc-CCcceeeeeccccceeeccCCccc------------
Confidence 744 44443322 22356777887777765443211111001 111222333333333333322222
Q ss_pred CCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCCceEEEeeeecccc
Q 004475 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 243 ~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~ 322 (751)
...+.++++ . +++.. ......+||+++++ ++..+.|+.........|||||+.|+|.+.
T Consensus 194 -~~~~~~~~~--~-~~~~~---------~~~~~~~l~~~d~~---g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~----- 252 (281)
T d1k32a2 194 -VSSPVIVGH--R-IYFIT---------DIDGFGQIYSTDLD---GKDLRKHTSFTDYYPRHLNTDGRRILFSKG----- 252 (281)
T ss_dssp -CEEEEEETT--E-EEEEE---------CTTSSCEEEEEETT---SCSCEECCCCCSSCEEEEEESSSCEEEEET-----
T ss_pred -cceeeeecc--c-cceec---------ccccccceEEEeCC---CCceEEeecCCCcccccCcCCCCEEEEEeC-----
Confidence 224466665 3 55544 12234589999997 777777776433222689999999999662
Q ss_pred eeEEEecCCCCCCcceeeee
Q 004475 323 TRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~ 342 (751)
..||+++++++ +.+.|..
T Consensus 253 ~~l~~~d~~~g--~~~~i~~ 270 (281)
T d1k32a2 253 GSIYIFNPDTE--KIEKIEI 270 (281)
T ss_dssp TEEEEECTTTC--CEEECCC
T ss_pred CEEEEEECCCC--CEEEecc
Confidence 36999999985 5566643
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.76 E-value=1.4e-17 Score=172.88 Aligned_cols=240 Identities=15% Similarity=0.092 Sum_probs=151.1
Q ss_pred CCceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCC--CchHHHHHHhCCe
Q 004475 478 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARRF 555 (751)
Q Consensus 478 ~~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~ 555 (751)
.++.|++.+.+.||..+..+.+..........++.|+||++||.+..+ ..|... ...++..|+++||
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~-----------~~~~~~~~~~sla~~L~~~Gy 92 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA-----------TNWISNLPNNSLAFILADAGY 92 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG-----------GGGSSSCTTTCHHHHHHHTTC
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccch-----------hHHhhcCccchHHHHHHHCCC
Confidence 356788899999998877765532222222344579999999964211 122111 1246778899999
Q ss_pred EEEEcCCCCCCCCCCCCCCc------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004475 556 AVLAGPSIPIIGEGDKLPND------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 623 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~------------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p 623 (751)
.|++ .+.+|+|.+.... .+.+....|+.++++++++... .+++.++||||||.+++.++..+|
T Consensus 93 ~V~~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p 167 (377)
T d1k8qa_ 93 DVWL---GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNP 167 (377)
T ss_dssp EEEE---CCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCH
T ss_pred EEEE---EcCCCCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhh
Confidence 9999 6667877764211 1233456788999999987633 368999999999999999999998
Q ss_pred CceeEEEEcc---CCCCCCCCcc--Cc-------------------cc-------------c-c---------------c
Q 004475 624 HLFCCGIARS---GSYNKTLTPF--GF-------------------QT-------------E-F---------------R 650 (751)
Q Consensus 624 ~~~~~~v~~~---~~~d~~~~~~--~~-------------------~~-------------~-~---------------~ 650 (751)
+.++++++.. +......... .. .. . . .
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (377)
T d1k8qa_ 168 KLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFD 247 (377)
T ss_dssp HHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCC
T ss_pred hhhhhceeEeeccccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCC
Confidence 8755444433 2211000000 00 00 0 0 0
Q ss_pred cc-h--hhHH----------------HHHh-------------------------cCcccccCCCCCCEEEEEcCCCCCC
Q 004475 651 TL-W--EATN----------------VYIE-------------------------MSPITHANKIKKPILIIHGEVDDKV 686 (751)
Q Consensus 651 ~~-~--~~~~----------------~~~~-------------------------~~~~~~~~~~~~P~li~~G~~D~~v 686 (751)
.. + .... .+.+ ..+...+.++++|+|+++|++|.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~ 327 (377)
T d1k8qa_ 248 TMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLA 327 (377)
T ss_dssp GGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSS
T ss_pred cccccHHHhhhhhhcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCcc
Confidence 00 0 0000 0000 0111235678999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeCCCCCc--CCccccHHHHHHHHHHHHHH
Q 004475 687 GLFPMQAERFFDALKGHGALSRLVLLPFEHHV--YAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 687 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~ 738 (751)
| ++.++.+.+.++. .+++++++++||. +...+..++++..|++||++
T Consensus 328 ~--~~~~~~l~~~lp~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 328 D--PHDVDLLLSKLPN---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp C--HHHHHHHHTTCTT---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred C--HHHHHHHHHHCCC---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 8 8887777665532 3678899999996 22245577889999999974
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.6e-18 Score=168.83 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=122.5
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
+.|+|||+|||||...... ...+..+...+...++++||.|+.++|+...+. .....++|+..+++
T Consensus 30 ~~~~vv~iHGGg~~~~~~~------~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~--------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 30 TREAVIYIHGGAWNDPENT------PNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CCEEEEEECCSTTTCTTCC------GGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccCCCCC------cchHHHHHHHHHHHHHhCCeEEEEeccccCcch--------hhhHHHHhhhhhhh
Confidence 4799999999987543211 111211111233455678999999777532221 12456889999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----------------ceeEEEEccCCCCCCCCccCccc------
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----------------LFCCGIARSGSYNKTLTPFGFQT------ 647 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-----------------~~~~~v~~~~~~d~~~~~~~~~~------ 647 (751)
|+.+.. +..+|+|+|||+||++|+.++...++ .+.+.+...+.++..........
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 998874 56799999999999999999876533 23455555554431100000000
Q ss_pred ----ccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 004475 648 ----EFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 720 (751)
Q Consensus 648 ----~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (751)
.....|..............+.++.+|+|++||++|.+|| +.++.+++++|++.+++++++++++++|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp--~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLT--LRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCC--THHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccC--HHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 0000000000000000112234567999999999999999 9999999999999999999999999999754
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.75 E-value=2.7e-17 Score=171.00 Aligned_cols=242 Identities=21% Similarity=0.210 Sum_probs=165.4
Q ss_pred CCc--eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCccc-------------------------------------CC
Q 004475 490 DGV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA-------------------------------------AG 530 (751)
Q Consensus 490 ~~~--~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~-------------------------------------~~ 530 (751)
||+ .+.+.+|+|.. .++.|+|+..+..+...... ..
T Consensus 37 DG~~d~l~~di~rP~~-----~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (405)
T d1lnsa3 37 RGENDLIKIQIIRPKS-----TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELP 111 (405)
T ss_dssp SSSCCEEEEEEEECCC-----SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCCC
T ss_pred CCCEeEEEEEEEccCC-----CCCceEEEEeCCcCCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 677 59999999986 34699999887754211000 00
Q ss_pred cccCCC-CccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcCCCC---------
Q 004475 531 QVRGSP-NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVAD--------- 599 (751)
Q Consensus 531 ~~~~~~-~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~v~~l~~~~~id--------- 599 (751)
.....+ .....+......+|+.+||+|+. .+.+|.|.+.+.. .+.....+|..++|+|+.++...+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~GYavv~---~D~RG~g~S~G~~~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~ 188 (405)
T d1lnsa3 112 IVDKAPYRFTHGWTYSLNDYFLTRGFASIY---VAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEI 188 (405)
T ss_dssp EESSCSCBCCCCCCCHHHHHHHTTTCEEEE---ECCTTSTTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEE
T ss_pred ccccccccccccccccchHHHHhCCCEEEE---ECCCCCCCCCCccccCChhhhhhHHHHHHHHHhcccccccccccccc
Confidence 000011 11122334566789999999999 5555666664432 233466889999999998653322
Q ss_pred -----CCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---------CccCccccc-----------c----
Q 004475 600 -----PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------TPFGFQTEF-----------R---- 650 (751)
Q Consensus 600 -----~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~---------~~~~~~~~~-----------~---- 650 (751)
..||+++|.|+||++++.+|+..|..++|+|..++..|... ....+.... .
T Consensus 189 ~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (405)
T d1lnsa3 189 KASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGA 268 (405)
T ss_dssp CCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHH
T ss_pred cccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccc
Confidence 24899999999999999999999999999999998876210 000000000 0
Q ss_pred ----------------------cchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEE
Q 004475 651 ----------------------TLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSR 708 (751)
Q Consensus 651 ----------------------~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~ 708 (751)
......+.+.+.++..++++|++|+|+++|..|..++ +.++.+++++++. +.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~--~~~~~~~y~al~~-~~~~~ 345 (405)
T d1lnsa3 269 DFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVT--PEQAYNFWKALPE-GHAKH 345 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSC--THHHHHHHHHSCT-TCCEE
T ss_pred hhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCC--HHHHHHHHHHHHh-CCCcE
Confidence 0001123456678888899999999999999999988 8999999998864 56788
Q ss_pred EEEeCCCCCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 709 LVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 709 ~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
+++-|+ +|.........++.+.+++||+++|+..
T Consensus 346 Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 346 AFLHRG-AHIYMNSWQSIDFSETINAYFVAKLLDR 379 (405)
T ss_dssp EEEESC-SSCCCTTBSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCC-CCCCCcccccchHHHHHHHHHHHHhCCC
Confidence 998886 6875433333456778899999999753
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.74 E-value=8.8e-18 Score=162.79 Aligned_cols=231 Identities=13% Similarity=0.021 Sum_probs=146.4
Q ss_pred CCccCCceEEEEEEcCC-CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh
Q 004475 474 PTLASLQKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA 552 (751)
Q Consensus 474 ~~~~~~~~e~i~~~~~~-~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (751)
|+.+..+.+++.+.+.. +.++.+++|+|++++. .++|+||++||+++... .........+.+
T Consensus 8 p~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~~---~~~Pvvv~lhG~~~~~~--------------~~~~~~l~~l~~ 70 (246)
T d3c8da2 8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGDVTA---EERPLAVLLDGEFWAQS--------------MPVWPVLTSLTH 70 (246)
T ss_dssp CCCCSSCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHHHT--------------SCCHHHHHHHHH
T ss_pred CCCCCCCcEEEEEECCCCCCEEEEEEEECCCCCC---CCCCEEEEeCCcchhcc--------------CcHHHHHHHHHH
Confidence 34444567888888753 7789999999998753 24999999999753210 001123445565
Q ss_pred CC----eEEEEcCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 004475 553 RR----FAVLAGPSIPIIGEG-DKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627 (751)
Q Consensus 553 ~G----~~v~~~~~~~~~g~g-~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 627 (751)
+| ++++.++........ .......+...+.+++...++... +..+|+++++++|+||||++|+.++.++|++|+
T Consensus 71 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~ 149 (246)
T d3c8da2 71 RQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFG 149 (246)
T ss_dssp TTSSCSCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCC
T ss_pred hCCCCceEEeecccccccccccccCccHHHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhc
Confidence 55 334442221110000 001122333444444444443321 234688999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcE
Q 004475 628 CGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALS 707 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~ 707 (751)
++++++|.++....... ....+.+..+.....+..+|+++.+|..|..+ ...+++++++|+++|.++
T Consensus 150 a~~~~sg~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~~~l~~~L~~~g~~~ 216 (246)
T d3c8da2 150 CVLSQSGSYWWPHRGGQ----------QEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI---MRANQALYAQLHPIKESI 216 (246)
T ss_dssp EEEEESCCTTTTCTTSS----------SCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH---HHHHHHHHHHTGGGTTSE
T ss_pred EEEcCCcccccccCCcc----------chHHHHHHhhhhhhhccCCCeEEEecCCCcch---hHHHHHHHHHHHHCCCCE
Confidence 99999998764322110 11122233344556667899999999999876 477889999999999999
Q ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 708 RLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 708 ~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
++.++|| +|.+. .+...+...+.||-+.
T Consensus 217 ~~~~~~G-gH~~~---~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 217 FWRQVDG-GHDAL---CWRGGLMQGLIDLWQP 244 (246)
T ss_dssp EEEEESC-CSCHH---HHHHHHHHHHHHHHGG
T ss_pred EEEEeCC-CCChH---HHHHHHHHHHHHHHHh
Confidence 9999998 79753 3556666666666544
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.74 E-value=6.3e-17 Score=152.10 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=122.8
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC----CC-CCCC---CchhHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG----EG-DKLP---NDRFVEQLV 582 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g----~g-~~~~---~~~~~~~~~ 582 (751)
++|+||++||.|. +...+ ..+...++ .++.++++....... +. .... .........
T Consensus 22 ~~p~vv~lHG~g~-----------~~~~~----~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (209)
T d3b5ea1 22 SRECLFLLHGSGV-----------DETTL----VPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAET 85 (209)
T ss_dssp CCCEEEEECCTTB-----------CTTTT----HHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHH
T ss_pred CCCEEEEEcCCCC-----------CHHHH----HHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHH
Confidence 4799999999752 11112 13344444 467777643321110 10 0000 111223345
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhc
Q 004475 583 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEM 662 (751)
Q Consensus 583 ~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (751)
+++.+.|+.+.++..+|.+||+++|||+||.+|+.++.++|+.++++++++|.......
T Consensus 86 ~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~~~--------------------- 144 (209)
T d3b5ea1 86 AAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHV--------------------- 144 (209)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSSC---------------------
T ss_pred HHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccccc---------------------
Confidence 66667777777777789999999999999999999999999999999999996432111
Q ss_pred CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 663 SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 663 ~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
......++|+|++||+.|+++| ..+.++.+.|++.|.+++++++++ +|.+.. ..+..+.+||.
T Consensus 145 ---~~~~~~~~p~~~~~G~~D~~~~---~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~~-----~~~~~~~~wl~ 207 (209)
T d3b5ea1 145 ---PATDLAGIRTLIIAGAADETYG---PFVPALVTLLSRHGAEVDARIIPS-GHDIGD-----PDAAIVRQWLA 207 (209)
T ss_dssp ---CCCCCTTCEEEEEEETTCTTTG---GGHHHHHHHHHHTTCEEEEEEESC-CSCCCH-----HHHHHHHHHHH
T ss_pred ---cccccccchheeeeccCCCccC---HHHHHHHHHHHHCCCCeEEEEECC-CCCCCH-----HHHHHHHHHhC
Confidence 0112346899999999999985 567788999999999999999998 698852 44567788884
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=9.3e-18 Score=167.00 Aligned_cols=215 Identities=19% Similarity=0.160 Sum_probs=139.3
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..+|.+|....+-.++ ..|+||++||++..+ ..+ ......++++||.|++ ++.+|
T Consensus 8 ~~~g~~i~y~~~g~~~-------~~~~iv~lHG~~g~~-----------~~~----~~~~~~~~~~~~~vi~---~D~~G 62 (290)
T d1mtza_ 8 KVNGIYIYYKLCKAPE-------EKAKLMTMHGGPGMS-----------HDY----LLSLRDMTKEGITVLF---YDQFG 62 (290)
T ss_dssp EETTEEEEEEEECCSS-------CSEEEEEECCTTTCC-----------SGG----GGGGGGGGGGTEEEEE---ECCTT
T ss_pred EECCEEEEEEEcCCCC-------CCCeEEEECCCCCch-----------HHH----HHHHHHHHHCCCEEEE---EeCCC
Confidence 3578888777765432 258999999964111 111 1233456778999999 66778
Q ss_pred CCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---
Q 004475 568 EGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--- 641 (751)
Q Consensus 568 ~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~--- 641 (751)
+|.+..... .....++|+.++++.+.. .+++.++||||||.+|+.+|.++|++++++++.++.......
T Consensus 63 ~G~S~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 137 (290)
T d1mtza_ 63 CGRSEEPDQSKFTIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKE 137 (290)
T ss_dssp STTSCCCCGGGCSHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHH
T ss_pred Cccccccccccccccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhh
Confidence 887754322 345667777777766632 358999999999999999999999999999998876321000
Q ss_pred --------cc-------------Cccccc---------------ccchh-----hHHH------HH--------------
Q 004475 642 --------PF-------------GFQTEF---------------RTLWE-----ATNV------YI-------------- 660 (751)
Q Consensus 642 --------~~-------------~~~~~~---------------~~~~~-----~~~~------~~-------------- 660 (751)
.. ...... ...+. .... +.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (290)
T d1mtza_ 138 MNRLIDELPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTI 217 (290)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTT
T ss_pred hhhhhhhhhHHHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhhh
Confidence 00 000000 00000 0000 00
Q ss_pred -hcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 661 -EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 661 -~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+....+.++++|+|+++|++|.++| ..++.+.+.++ .+++++++++||... .+..+.+.+.+.+||.+|
T Consensus 218 ~~~~~~~~~~~i~~P~l~i~G~~D~~~~---~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~h 289 (290)
T d1mtza_ 218 KDWDITDKISAIKIPTLITVGEYDEVTP---NVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 289 (290)
T ss_dssp TTCBCTTTGGGCCSCEEEEEETTCSSCH---HHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred hcccHHHHhhcccceEEEEEeCCCCCCH---HHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHHh
Confidence 001122345678999999999998764 55666665553 458999999999876 566788999999999987
Q ss_pred h
Q 004475 740 C 740 (751)
Q Consensus 740 l 740 (751)
+
T Consensus 290 ~ 290 (290)
T d1mtza_ 290 L 290 (290)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.72 E-value=1.7e-16 Score=157.28 Aligned_cols=222 Identities=16% Similarity=0.087 Sum_probs=135.7
Q ss_pred eEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEc
Q 004475 481 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 560 (751)
Q Consensus 481 ~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~ 560 (751)
.-+.+++ .+...+++...-+++ .|+||++||.|.. ...+..|. .+...| ++||.|++
T Consensus 4 ~~~~~~~-~~~~~~h~~~~G~~~--------~p~ivllHG~~~~-----------~~~~~~~~-~~~~~L-~~~~~vi~- 60 (281)
T d1c4xa_ 4 IIEKRFP-SGTLASHALVAGDPQ--------SPAVVLLHGAGPG-----------AHAASNWR-PIIPDL-AENFFVVA- 60 (281)
T ss_dssp CEEEEEC-CTTSCEEEEEESCTT--------SCEEEEECCCSTT-----------CCHHHHHG-GGHHHH-HTTSEEEE-
T ss_pred EEEEEEc-cCCEEEEEEEEecCC--------CCEEEEECCCCCC-----------CcHHHHHH-HHHHHH-hCCCEEEE-
Confidence 3344454 345678877776543 5899999996411 11111111 223333 56999999
Q ss_pred CCCCCCCCCCCCCCc---hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 561 PSIPIIGEGDKLPND---RF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 561 ~~~~~~g~g~~~~~~---~~-~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
++.+|+|.+.... .. .......+..+++.+.+.. .+++.++||||||.+|+.+|.++|++++++|++++..
T Consensus 61 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~ 135 (281)
T d1c4xa_ 61 --PDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFG---IEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG 135 (281)
T ss_dssp --ECCTTSTTSCCCSSCCSSHHHHHHHHHHHHHHHHHHHT---CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred --EeCCCCccccccccccccchhhHHHhhhhccccccccc---cccceeccccccccccccccccccccccceEEecccc
Confidence 6667888774321 11 1222222223333333322 3589999999999999999999999999999988753
Q ss_pred CCCCCcc-------C------------------ccccc-ccchh----------hH-------HHHH--------hcCcc
Q 004475 637 NKTLTPF-------G------------------FQTEF-RTLWE----------AT-------NVYI--------EMSPI 665 (751)
Q Consensus 637 d~~~~~~-------~------------------~~~~~-~~~~~----------~~-------~~~~--------~~~~~ 665 (751)
....... . ..... ..... .. ..+. .....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
T d1c4xa_ 136 APMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPP 215 (281)
T ss_dssp SCCSSCCHHHHHHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCH
T ss_pred CccccchhHHHHHHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccch
Confidence 2111000 0 00000 00000 00 0000 01112
Q ss_pred cccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 666 THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 666 ~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
..+.++++|+|+++|++|..+| +..++.+.+.++ .+++++++++||... .+..+++.+.+++||+
T Consensus 216 ~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 216 ATLGRLPHDVLVFHGRQDRIVP--LDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHTTCCSCEEEEEETTCSSSC--THHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHH
T ss_pred hhhhhhccceEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHhC
Confidence 3457789999999999999998 888877776553 468999999999876 5677889999999986
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.70 E-value=6.8e-16 Score=152.10 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=139.8
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
++.+.||.+|+...+-|++ .|+||++||.+.. ...| ......|+++||.|++ ++
T Consensus 2 ~i~~~dG~~l~y~~~G~~~--------~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~---~D 55 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLS-----------ADDW----DNQMLFFLSHGYRVIA---HD 55 (275)
T ss_dssp EEECTTSCEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEecCCCEEEEEEecCCC--------CCeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEE---Ee
Confidence 3567899999999998754 3678999996421 1111 2446678899999999 56
Q ss_pred CCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh-HHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004475 565 IIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY-GAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 565 ~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~-GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+|+|.+... ........+|+.++++.+ +.+++.++|||+ ||.+++.++.++|++++++|++++.......
T Consensus 56 ~~G~G~s~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~ 129 (275)
T d1a88a_ 56 RRGHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVK 129 (275)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBC
T ss_pred cccccccccccccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccccccccc
Confidence 6677776432 223566677777777766 235788899987 5666777788999999999998864321110
Q ss_pred c-cC---ccc-------------------------------cccc--------chhh------------HHHHHhcCccc
Q 004475 642 P-FG---FQT-------------------------------EFRT--------LWEA------------TNVYIEMSPIT 666 (751)
Q Consensus 642 ~-~~---~~~-------------------------------~~~~--------~~~~------------~~~~~~~~~~~ 666 (751)
. .. ... .... .+.. ...+.......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (275)
T d1a88a_ 130 SDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTD 209 (275)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhH
Confidence 0 00 000 0000 0000 00011122223
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.++++|+|+++|++|..+| .....+....+ ..++++++++++||... .+..+++.+.+.+||+
T Consensus 210 ~l~~i~~P~l~i~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 210 DLKRIDVPVLVAHGTDDQVVP--YADAAPKSAEL---LANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp HHHHCCSCEEEEEETTCSSSC--STTTHHHHHHH---STTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred HHHhhccccceeecCCCCCcC--HHHHHHHHHHh---CCCCEEEEECCCCCchH-HhCHHHHHHHHHHHHc
Confidence 456789999999999999998 65544443332 23578999999999876 5678889999999986
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=3.1e-16 Score=155.76 Aligned_cols=242 Identities=13% Similarity=0.036 Sum_probs=157.0
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+++.+++++. .+..+...++.|.+ ++|+|+++||++... ....+.. .......+.+.|+++
T Consensus 7 ~~v~~~~~~s~~~~r~~~~~v~~p~~-------~~Pvl~llhG~~~~~---------d~~~~~~-~~~~~~~~~~~~~~~ 69 (288)
T d1sfra_ 7 LPVEYLQVPSPSMGRDIKVQFQSGGA-------NSPALYLLDGLRAQD---------DFSGWDI-NTPAFEWYDQSGLSV 69 (288)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCST-------TBCEEEEECCTTCCS---------SSCHHHH-HCCHHHHHTTSSCEE
T ss_pred CEEEEEEEECCCCCcEEEEEEeCCCC-------CceEEEEcCCCCCCC---------cchhhhh-hccHHHHHHhCCCEE
Confidence 45677777753 45678888877743 599999999964210 0001100 002344566789999
Q ss_pred EEcCCCCCCCCCCCCC---------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 558 LAGPSIPIIGEGDKLP---------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 558 ~~~~~~~~~g~g~~~~---------~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
+.++......++.... ...+... -+.+++.+|.++..+|+++++|+|+||||++|+.+++++|++|++
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~a 146 (288)
T d1sfra_ 70 VMPVGGQSSFYSDWYQPACGKAGCQTYKWETF---LTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVY 146 (288)
T ss_dssp EEECCCTTCTTCBCSSCEEETTEEECCBHHHH---HHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEE
T ss_pred EEeccCCCCCCccccCcccccccccchhHHHH---HHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccE
Confidence 9866533322222111 1122222 345777888888779999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCccCcccc------c----ccch--hhHHHHHhcCcccccCC---CCCCEEEEEcCCCCCCCCC----
Q 004475 629 GIARSGSYNKTLTPFGFQTE------F----RTLW--EATNVYIEMSPITHANK---IKKPILIIHGEVDDKVGLF---- 689 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~~~------~----~~~~--~~~~~~~~~~~~~~~~~---~~~P~li~~G~~D~~vp~~---- 689 (751)
+++++|.++........... . ...+ .....+...+|..++++ ..+++++.+|..|..++..
T Consensus 147 v~~~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~ 226 (288)
T d1sfra_ 147 AGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLP 226 (288)
T ss_dssp EEEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHH
T ss_pred EEEecCcccccccccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccc
Confidence 99999987744322110000 0 0000 11123445555554433 2578999999999876510
Q ss_pred --------hHHHHHHHHHHHhCCCcEEEEEeCCC-CCcCCccccHHHHHHHHHHHHHHHhcCC
Q 004475 690 --------PMQAERFFDALKGHGALSRLVLLPFE-HHVYAARENVMHVIWETDRWLQKYCLSN 743 (751)
Q Consensus 690 --------~~~~~~~~~~l~~~~~~~~~~~~~~~-~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 743 (751)
..+++++.++|.++|.++++..+++. +|.+. .+...+.+++.||.+.|+..
T Consensus 227 ~~~~e~~~~~~~~~l~~~l~~~g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg~~ 286 (288)
T d1sfra_ 227 AKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGAT 286 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTCC
T ss_pred cchhHHHHHHHHHHHHHHHHHCCCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcCCC
Confidence 25678899999999999999998865 69853 35566777889999988754
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.70 E-value=7.2e-17 Score=155.28 Aligned_cols=201 Identities=13% Similarity=0.115 Sum_probs=128.8
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC--CchhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~v 589 (751)
.++||++||.+ ++...+ ..++..|+++||.|++ ++.+|+|.+.. ..........+...++
T Consensus 11 ~~~vvliHG~~-----------~~~~~~----~~l~~~L~~~G~~v~~---~D~~G~G~s~~~~~~~~~~~~~~~~~~~~ 72 (242)
T d1tqha_ 11 ERAVLLLHGFT-----------GNSADV----RMLGRFLESKGYTCHA---PIYKGHGVPPEELVHTGPDDWWQDVMNGY 72 (242)
T ss_dssp SCEEEEECCTT-----------CCTHHH----HHHHHHHHHTTCEEEE---CCCTTSSSCHHHHTTCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCC-----------CCHHHH----HHHHHHHHHCCCEEEE---EeCCCCccccccccccchhHHHHHHHHHH
Confidence 36788999964 111222 2456788999999999 66678876532 1222344556666677
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC--c-------ccccccchh------
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG--F-------QTEFRTLWE------ 654 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~--~-------~~~~~~~~~------ 654 (751)
.++.... .++++++|||+||.+++.++.++|.....++ ..+.......... . .........
T Consensus 73 ~~~~~~~---~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (242)
T d1tqha_ 73 EFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM-CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEM 148 (242)
T ss_dssp HHHHHHT---CCCEEEEEETHHHHHHHHHHTTSCCSCEEEE-SCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hhhhhcc---cCceEEEEcchHHHHhhhhcccCcccccccc-cccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHH
Confidence 6666543 4689999999999999999999986543332 2222111000000 0 000000000
Q ss_pred -----------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc
Q 004475 655 -----------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 723 (751)
Q Consensus 655 -----------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 723 (751)
.............+..+++|+|+++|++|..+| +..++.+++.+. +..++++++++++|......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~ 224 (242)
T d1tqha_ 149 EKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMIN--PDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQ 224 (242)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSC--TTHHHHHHHHCC--CSSEEEEEETTCCSSGGGST
T ss_pred hhhhhhccchhhcccccccccccccceeccccceeecccCCccC--HHHHHHHHHHcC--CCCcEEEEECCCCCcCcccc
Confidence 000000111223456789999999999999999 888888887764 34689999999999877555
Q ss_pred cHHHHHHHHHHHHHH
Q 004475 724 NVMHVIWETDRWLQK 738 (751)
Q Consensus 724 ~~~~~~~~~~~fl~~ 738 (751)
..+.+.+.+.+||++
T Consensus 225 ~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 225 EKDQLHEDIYAFLES 239 (242)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 678899999999985
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.70 E-value=3.5e-16 Score=161.72 Aligned_cols=252 Identities=15% Similarity=0.124 Sum_probs=159.9
Q ss_pred CceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 479 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 479 ~~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
+..+.+.++..||+++.+.+|+|++ .+++|+||+.|+.+....... .................|+++||+|+
T Consensus 26 ~~~~~v~ipmrDG~~L~~~v~~P~~-----~~~~P~il~~tpY~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~Gy~vv 97 (385)
T d2b9va2 26 YIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTPYNAKGRANR---VPNALTMREVLPQGDDVFVEGGYIRV 97 (385)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHHHTCS---STTCSSHHHHSCGGGHHHHHTTCEEE
T ss_pred CeEeEEEEECCCCCEEEEEEEEcCC-----CCceeEEEEEccCCCCCcccc---CCcccccccccchHHHHHHhCCcEEE
Confidence 4567899999999999999999976 457999999987642211100 00001111112234568899999999
Q ss_pred EcCCCCCCCCCCCCCCc-----------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcee
Q 004475 559 AGPSIPIIGEGDKLPND-----------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 627 (751)
Q Consensus 559 ~~~~~~~~g~g~~~~~~-----------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 627 (751)
..+.+ |.|.+.... .......+|..++|+|+.++..++..||+++|+|+||++++.+|+..|+.++
T Consensus 98 ~~d~R---G~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~ 174 (385)
T d2b9va2 98 FQDIR---GKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALK 174 (385)
T ss_dssp EEECT---TSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEE
T ss_pred EEcCC---cccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcce
Confidence 95554 544442211 1122457999999999999976778899999999999999999999989999
Q ss_pred EEEEccCCCCCCCCccCc--------------------------ccccccchhh--------------------------
Q 004475 628 CGIARSGSYNKTLTPFGF--------------------------QTEFRTLWEA-------------------------- 655 (751)
Q Consensus 628 ~~v~~~~~~d~~~~~~~~--------------------------~~~~~~~~~~-------------------------- 655 (751)
+++...+..+........ .......+..
T Consensus 175 a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 254 (385)
T d2b9va2 175 VAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMH 254 (385)
T ss_dssp EEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHH
T ss_pred EEEEecccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhc
Confidence 999988876632211000 0000000000
Q ss_pred -----HHHHHhcCcccc--cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhC--CCcEEEEEeCCCCCcCCcc----
Q 004475 656 -----TNVYIEMSPITH--ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH--GALSRLVLLPFEHHVYAAR---- 722 (751)
Q Consensus 656 -----~~~~~~~~~~~~--~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~H~~~~~---- 722 (751)
.+.+...++... ..++.+|+|++.|..|... ...+.+.++.++.. +.+.++++-|.. |.....
T Consensus 255 ~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~---~~g~~~~~~~l~~~~~~~~~~LiiGPw~-H~~~~~~~~~ 330 (385)
T d2b9va2 255 AHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQED---MWGAIHAWQALKDADVKAPNTLVMGPWR-HSGVNYNGST 330 (385)
T ss_dssp HCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC---SSHHHHHHHHHHHTTCSSCEEEEEESCC-TTGGGSCCSE
T ss_pred cCcccchhhhhcChhHHHhhccccCceEEEEecccCCc---ccchHHHHHHHHhhccCCCcEEEEeCCc-CCCccccccc
Confidence 011222232222 2356789999999887654 35556677777654 456788888874 643111
Q ss_pred --------c-cHHHHHHHHHHHHHHHhcCCCC
Q 004475 723 --------E-NVMHVIWETDRWLQKYCLSNTS 745 (751)
Q Consensus 723 --------~-~~~~~~~~~~~fl~~~l~~~~~ 745 (751)
+ ........+++||+++|+....
T Consensus 331 ~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~ 362 (385)
T d2b9va2 331 LGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSA 362 (385)
T ss_dssp ETTEECSSCHHHHHHHHTHHHHHHHHHSTTCC
T ss_pred ccccccCcccchhhHHHHHHHHHHHHcCCCCC
Confidence 1 1233455679999999986443
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.70 E-value=7.5e-16 Score=151.72 Aligned_cols=214 Identities=14% Similarity=0.113 Sum_probs=132.6
Q ss_pred EEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC
Q 004475 486 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 565 (751)
Q Consensus 486 ~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 565 (751)
+++.||.++....+- + -|+||++||.+. +...| ......|+++||.|++ .+.
T Consensus 3 ~~t~dG~~l~y~~~G--------~--g~~ivlvHG~~~-----------~~~~~----~~~~~~l~~~g~~vi~---~D~ 54 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDWG--------Q--GRPVVFIHGWPL-----------NGDAW----QDQLKAVVDAGYRGIA---HDR 54 (274)
T ss_dssp EECTTSCEEEEEEEC--------S--SSEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---ECC
T ss_pred EECcCCCEEEEEEEC--------C--CCeEEEECCCCC-----------CHHHH----HHHHHHHHHCCCEEEE---EeC
Confidence 456688877766552 1 256899999641 11111 2345577889999999 566
Q ss_pred CCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCCCc
Q 004475 566 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 566 ~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~~~~d~~~~~ 642 (751)
+|+|.+... ........+|+.++++.+ ..+++.++||||||.+++.+++ +.|+++++++++++........
T Consensus 55 ~G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~ 128 (274)
T d1a8qa_ 55 RGHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKS 128 (274)
T ss_dssp TTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCC
T ss_pred CCCcccccccccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhh
Confidence 677776443 233455566666666544 2468999999999999888665 4588999999888643211100
Q ss_pred ----cCccccc------------------------------ccchh--------------------hHHHHHhcCccccc
Q 004475 643 ----FGFQTEF------------------------------RTLWE--------------------ATNVYIEMSPITHA 668 (751)
Q Consensus 643 ----~~~~~~~------------------------------~~~~~--------------------~~~~~~~~~~~~~~ 668 (751)
....... ..... ....+...+....+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (274)
T d1a8qa_ 129 DKNPDGVPDEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDL 208 (274)
T ss_dssp SSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccchhhHHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHH
Confidence 0000000 00000 00011122223346
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCc-cccHHHHHHHHHHHHHH
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA-RENVMHVIWETDRWLQK 738 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~~fl~~ 738 (751)
.++++|+|+++|++|..+| .+...+....+ -..+++++++++||.... .+..+.+.+.+.+||++
T Consensus 209 ~~i~~Pvlii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 209 KKFDIPTLVVHGDDDQVVP--IDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp TTCCSCEEEEEETTCSSSC--GGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred HhccceeeeeccCCCCCcC--HHHHHHHHHHh---CCCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 7899999999999999998 66543333222 134689999999998653 35567888889999863
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.70 E-value=9.3e-16 Score=145.10 Aligned_cols=118 Identities=25% Similarity=0.242 Sum_probs=92.7
Q ss_pred cCCCCCCcEEEEEeChHHHHHHHHHHh-CCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCC
Q 004475 595 RGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK 673 (751)
Q Consensus 595 ~~~id~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (751)
...+|++||+++|+||||.+|+.++.. .+..+.+++++++......... .. .....++
T Consensus 100 ~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~~~----~~-----------------~~~~~~~ 158 (218)
T d1auoa_ 100 RTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDEL----EL-----------------SASQQRI 158 (218)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTC----CC-----------------CHHHHTC
T ss_pred HhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccccc----cc-----------------chhccCC
Confidence 345899999999999999999988764 4567999999998643211100 00 0011257
Q ss_pred CEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 674 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 674 P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
|+|++||+.|.+|| .+.++++++.|++.|.+++++.|+ ++|.+.. +.+..+.+||.++|+
T Consensus 159 pvl~~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~~-----~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 159 PALCLHGQYDDVVQ--NAMGRSAFEHLKSRGVTVTWQEYP-MGHEVLP-----QEIHDIGAWLAARLG 218 (218)
T ss_dssp CEEEEEETTCSSSC--HHHHHHHHHHHHTTTCCEEEEEES-CSSSCCH-----HHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCccC--HHHHHHHHHHHHHCCCCEEEEEEC-CCCccCH-----HHHHHHHHHHHHhcC
Confidence 99999999999999 999999999999999999999998 5798752 567889999998874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=8.2e-15 Score=149.20 Aligned_cols=281 Identities=14% Similarity=0.105 Sum_probs=172.6
Q ss_pred CCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeee-ccCCCCccccceeeeeEEecCCcEEEEee
Q 004475 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 27 ~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 105 (751)
+.....+...+|||||++||... .+.|.++++..++... +...........+..++|||||+.|+..+
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~-----------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEE-----------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence 33444678899999999998732 2468888887654322 21111000112477899999999998774
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-C---ceecCCC-ceEEee
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T---AKDFGTP-AVYTAV 180 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~---~~~lt~~-~~~~~~ 180 (751)
.+ ..|.++++.. . ...+..+ ..+...
T Consensus 117 ~d-------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 147 (337)
T d1gxra_ 117 EA-------------------------------------------------STLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp SS-------------------------------------------------SEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred cc-------------------------------------------------ccccccccccccccccccccccccccccc
Confidence 42 3566777632 2 2233334 667788
Q ss_pred eeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
.|+||+..++....+ ..+.+|++.+++....... ....+..++|+++|+. ++..
T Consensus 148 ~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~------------~~~~v~~l~~s~~~~~-~~~~ 201 (337)
T d1gxra_ 148 AISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQG------------HTDGASCIDISNDGTK-LWTG 201 (337)
T ss_dssp EECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECC------------CSSCEEEEEECTTSSE-EEEE
T ss_pred ccccccccccccccc-------------ccccccccccccccccccc------------cccccccccccccccc-cccc
Confidence 999999988765433 3578899887765433221 1123557899999998 5654
Q ss_pred EeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCccee
Q 004475 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 339 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (751)
. ..+.+.++++. .+...........+. +.|+|+++.|+.... ...+.+.+..++ ....
T Consensus 202 ~------------~d~~v~i~d~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~ 260 (337)
T d1gxra_ 202 G------------LDNTVRSWDLR---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP--DKYQ 260 (337)
T ss_dssp E------------TTSEEEEEETT---TTEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS--CEEE
T ss_pred c------------ccccccccccc---cceeecccccccceEEEEEcccccccceecc----cccccccccccc--cccc
Confidence 3 23578888875 233323334455666 899999999886552 245666677664 2222
Q ss_pred eeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhh
Q 004475 340 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 419 (751)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 419 (751)
... ....+.. ++|+|||+.|+..+.+ ..|++||+.+++..........
T Consensus 261 ~~~-~~~~i~~------v~~s~~g~~l~s~s~D---------------------g~i~iwd~~~~~~~~~~~~~~~---- 308 (337)
T d1gxra_ 261 LHL-HESCVLS------LKFAYCGKWFVSTGKD---------------------NLLNAWRTPYGASIFQSKESSS---- 308 (337)
T ss_dssp ECC-CSSCEEE------EEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECSSC----
T ss_pred ccc-cccccce------EEECCCCCEEEEEeCC---------------------CeEEEEECCCCCEEEEccCCCC----
Confidence 221 1112222 7899999988877632 3788999998876544333221
Q ss_pred ceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 420 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 420 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
+. .++||||++.|+... . . +.|.++|+
T Consensus 309 -v~-------~~~~s~d~~~l~t~s-~-D--~~I~vWdl 335 (337)
T d1gxra_ 309 -VL-------SCDISVDDKYIVTGS-G-D--KKATVYEV 335 (337)
T ss_dssp -EE-------EEEECTTSCEEEEEE-T-T--SCEEEEEE
T ss_pred -EE-------EEEEeCCCCEEEEEe-C-C--CeEEEEEE
Confidence 22 258999998776532 2 1 34555553
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.69 E-value=5.5e-16 Score=153.66 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=130.0
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 588 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~ 588 (751)
-|+||++||.|..+ ..|.... .....++++||.|++ ++.+|+|.+... ........+|+.++
T Consensus 30 G~~ivllHG~~~~~-----------~~~~~~~-~~l~~~~~~g~~v~~---~D~~G~G~S~~~~~~~~~~~~~~~~i~~l 94 (283)
T d2rhwa1 30 GETVIMLHGGGPGA-----------GGWSNYY-RNVGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (283)
T ss_dssp SSEEEEECCCSTTC-----------CHHHHHT-TTHHHHHHTTCEEEE---ECCTTSTTSCCCCCSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCh-----------hHHHHHH-HHHHHHHHCCCEEEE---EeCCCCcccccccccccccchhhhhcccc
Confidence 37899999964211 1121111 223456789999999 566778776432 22333445666666
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--CccCccc---------c---------
Q 004475 589 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPFGFQT---------E--------- 648 (751)
Q Consensus 589 v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~--~~~~~~~---------~--------- 648 (751)
++.+ +.+++.++||||||.+|+.++.++|++++++|++++..-... ....... .
T Consensus 95 i~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (283)
T d2rhwa1 95 MDAL------DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (283)
T ss_dssp HHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHH
T ss_pred cccc------cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 6654 236899999999999999999999999999999886422110 0000000 0
Q ss_pred -------ccc--------chh----hHHH------------HHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 649 -------FRT--------LWE----ATNV------------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 649 -------~~~--------~~~----~~~~------------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
... .+. .... ....+....+.++++|+|+++|++|..+| +..++.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~ 246 (283)
T d2rhwa1 169 LQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVP--LDHGLKLL 246 (283)
T ss_dssp HHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSC--THHHHHHH
T ss_pred HHHhhcccccCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcC--HHHHHHHH
Confidence 000 000 0000 01112334566789999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+.+ ..+++++++++||... .+..+++.+.+.+||++
T Consensus 247 ~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 247 WNI----DDARLHVFSKCGHWAQ-WEHADEFNRLVIDFLRH 282 (283)
T ss_dssp HHS----SSEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHH
T ss_pred HhC----CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHhC
Confidence 765 3578999999999765 56678889999999975
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.68 E-value=4.4e-16 Score=152.91 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=133.6
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..+|.++..... + + -|.||++||.|.. ...+..|. ... ..+++||.|++ ++.+|
T Consensus 8 ~~dg~~l~y~~~---G-----~--g~~vvllHG~~~~-----------~~~~~~~~-~~~-~~l~~~~~v~~---~D~~G 61 (268)
T d1j1ia_ 8 NAGGVETRYLEA---G-----K--GQPVILIHGGGAG-----------AESEGNWR-NVI-PILARHYRVIA---MDMLG 61 (268)
T ss_dssp EETTEEEEEEEE---C-----C--SSEEEEECCCSTT-----------CCHHHHHT-TTH-HHHTTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEE---c-----C--CCeEEEECCCCCC-----------ccHHHHHH-HHH-HHHhcCCEEEE---Ecccc
Confidence 357877765432 2 1 2568899996411 11111111 122 33467999999 56667
Q ss_pred CCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---
Q 004475 568 EGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--- 642 (751)
Q Consensus 568 ~g~~~~--~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~--- 642 (751)
+|.+.. .........+|+.+.++.+ . + ..++.++|||+||.+++.+|.++|++++++|++++........
T Consensus 62 ~G~S~~~~~~~~~~~~~~~~~~~i~~l---~-~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~ 136 (268)
T d1j1ia_ 62 FGKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL 136 (268)
T ss_dssp STTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC-----
T ss_pred cccccCCccccccccccccchhhHHHh---h-h-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhh
Confidence 777643 2233455566665555443 2 2 2579999999999999999999999999999988742211000
Q ss_pred -----cCcccc------------c-ccc-------hh-------------hHHHHHh----cCcccccCCCCCCEEEEEc
Q 004475 643 -----FGFQTE------------F-RTL-------WE-------------ATNVYIE----MSPITHANKIKKPILIIHG 680 (751)
Q Consensus 643 -----~~~~~~------------~-~~~-------~~-------------~~~~~~~----~~~~~~~~~~~~P~li~~G 680 (751)
...... . ... +. ....+.. ......+.++++|+|+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G 216 (268)
T d1j1ia_ 137 RPIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQG 216 (268)
T ss_dssp -----CCSCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEE
T ss_pred hhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEe
Confidence 000000 0 000 00 0000000 1112346788999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 681 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 681 ~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
++|..+| +..+..+.+.+ ..+++++++++||... .+..+++.+.+.+||.+
T Consensus 217 ~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 217 KDDKVVP--VETAYKFLDLI----DDSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp TTCSSSC--HHHHHHHHHHC----TTEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred CCCCCCC--HHHHHHHHHhC----CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 9999998 88877777665 3578999999999875 56778899999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.68 E-value=2e-14 Score=144.22 Aligned_cols=250 Identities=9% Similarity=0.028 Sum_probs=154.7
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
....+++|||+.|||.. +..++++++++++...+..+... .+..++|||||++|+..+.+
T Consensus 20 ~~~~a~~~~g~~l~~~~-----------~~~v~i~~~~~~~~~~~~~~H~~----~v~~~~~sp~g~~latg~~d----- 79 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCN-----------GTSVYTVPVGSLTDTEIYTEHSH----QTTVAKTSPSGYYCASGDVH----- 79 (311)
T ss_dssp CCCCEECTTSSEEEEEE-----------TTEEEEEETTCSSCCEEECCCSS----CEEEEEECTTSSEEEEEETT-----
T ss_pred eEEEEEcCCCCEEEEEe-----------CCEEEEEECCCCceeEEEcCCCC----CEEEEEEeCCCCeEeccccC-----
Confidence 45678999999999953 35689999988776554333221 47889999999999877443
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-c--eecCCC-ceEEeeeeCCCCc
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-A--KDFGTP-AVYTAVEPSPDQK 187 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~--~~lt~~-~~~~~~~~SpDG~ 187 (751)
..|.++++ +++ . ..+..+ ..+..++|+|||+
T Consensus 80 --------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 115 (311)
T d1nr0a1 80 --------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115 (311)
T ss_dssp --------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred --------------------------------------------ceEeeeeeeccccccccccccccCcccccccccccc
Confidence 46777777 332 2 223333 6788999999999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
+|+...... ...+.+|+.++++.... +......+..+.|+|+|+.+++..+
T Consensus 116 ~l~~~~~~~-----------~~~~~v~~~~~~~~~~~------------l~~h~~~v~~v~~~~~~~~~l~sgs------ 166 (311)
T d1nr0a1 116 RIAAVGEGR-----------ERFGHVFLFDTGTSNGN------------LTGQARAMNSVDFKPSRPFRIISGS------ 166 (311)
T ss_dssp EEEEEECCS-----------SCSEEEEETTTCCBCBC------------CCCCSSCEEEEEECSSSSCEEEEEE------
T ss_pred ccccccccc-----------ccccccccccccccccc------------ccccccccccccccccceeeecccc------
Confidence 998875432 22356778776543211 1112234668899999998444332
Q ss_pred CccccCcccceeeccCCCCCCCC-ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeeccc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 345 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 345 (751)
..+.|.++++. ... ...+......+. +.|+||++.|+.... ...+.+.+...+ ..........
T Consensus 167 ------~d~~i~i~d~~---~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~--~~~~~~~~~~ 231 (311)
T d1nr0a1 167 ------DDNTVAIFEGP---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDG--TKTGVFEDDS 231 (311)
T ss_dssp ------TTSCEEEEETT---TBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTC--CEEEECBCTT
T ss_pred ------ccccccccccc---ccccccccccccccccccccCccccccccccc----cccccccccccc--cccccccccc
Confidence 23568888875 222 222233355566 899999998887552 234555666553 1122211111
Q ss_pred ccccCCC-CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 346 ENVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 346 ~~~~~~~-~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
.....+. ....++|+|||++|+..+.+ ..|++||+.+++..+.+.
T Consensus 232 ~~~~~h~~~V~~~~~s~~~~~l~tgs~D---------------------g~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 232 LKNVAHSGSVFGLTWSPDGTKIASASAD---------------------KTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEETT---------------------SEEEEEETTTTEEEEEEE
T ss_pred cccccccccccccccCCCCCEEEEEeCC---------------------CeEEEEECCCCcEEEEEE
Confidence 0000000 01127899999999887632 268999999988755444
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.67 E-value=1.6e-16 Score=148.87 Aligned_cols=110 Identities=22% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEE
Q 004475 598 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILI 677 (751)
Q Consensus 598 id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li 677 (751)
++.++|+++|+|+||.+++.++..+|+.+.+++++++....... .......+|+++
T Consensus 93 ~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i 148 (203)
T d2r8ba1 93 YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK------------------------ISPAKPTRRVLI 148 (203)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC------------------------CCCCCTTCEEEE
T ss_pred CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc------------------------cccccccchhhc
Confidence 57889999999999999999999999999999999996532111 011234689999
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 678 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 678 ~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+||++|++|| +.++++++++|++.|.+++++++++ +|.+.. +.++.+.+||.++
T Consensus 149 ~hG~~D~~vp--~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~~-----~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 149 TAGERDPICP--VQLTKALEESLKAQGGTVETVWHPG-GHEIRS-----GEIDAVRGFLAAY 202 (203)
T ss_dssp EEETTCTTSC--HHHHHHHHHHHHHHSSEEEEEEESS-CSSCCH-----HHHHHHHHHHGGG
T ss_pred cccCCCCccc--HHHHHHHHHHHHHCCCCEEEEEECC-CCcCCH-----HHHHHHHHHHHhc
Confidence 9999999999 9999999999999999999999987 699752 5577889999865
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=6.9e-16 Score=156.08 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=136.8
Q ss_pred EcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCC
Q 004475 487 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 566 (751)
Q Consensus 487 ~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 566 (751)
...+|.+|+...+ + + .|+||++||.+.. ...| ......|+++||.|++ .+.+
T Consensus 17 ~~~~g~~i~y~~~---G-----~--gp~vlllHG~~~~-----------~~~~----~~~~~~L~~~g~~vi~---~D~~ 68 (322)
T d1zd3a2 17 TVKPRVRLHFVEL---G-----S--GPAVCLCHGFPES-----------WYSW----RYQIPALAQAGYRVLA---MDMK 68 (322)
T ss_dssp EEETTEEEEEEEE---C-----C--SSEEEEECCTTCC-----------GGGG----TTHHHHHHHTTCEEEE---EECT
T ss_pred EECCCCEEEEEEE---c-----C--CCeEEEECCCCCC-----------HHHH----HHHHHHHHHCCCEEEE---eccc
Confidence 3447877776654 1 1 3789999996421 1112 2456678899999999 6667
Q ss_pred CCCCCCCCch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc
Q 004475 567 GEGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP 642 (751)
Q Consensus 567 g~g~~~~~~~----~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~ 642 (751)
|+|.+..... ......+++.+.++.+ +.+++.++||||||.+++.+|.++|++++++|++++........
T Consensus 69 G~G~S~~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~ 142 (322)
T d1zd3a2 69 GYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPN 142 (322)
T ss_dssp TSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSS
T ss_pred cccccccccccccccccccchhhhhhhhcc------cccccccccccchHHHHHHHHHhCCccccceEEEcccccccccc
Confidence 8887654321 2344455555555544 34689999999999999999999999999999887532110000
Q ss_pred cC----------------------------------------------ccc---------------ccc-cch---hhHH
Q 004475 643 FG----------------------------------------------FQT---------------EFR-TLW---EATN 657 (751)
Q Consensus 643 ~~----------------------------------------------~~~---------------~~~-~~~---~~~~ 657 (751)
.. ... ... ..+ ....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (322)
T d1zd3a2 143 MSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQ 222 (322)
T ss_dssp SCHHHHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHH
T ss_pred cchhhhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHH
Confidence 00 000 000 000 0000
Q ss_pred ----HH------------------HhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 658 ----VY------------------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 658 ----~~------------------~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
.+ ..........++++|+|+++|++|..++ +...+.+.+.+ ...++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~--~~~~~~~~~~~----~~~~~~~i~~~ 296 (322)
T d1zd3a2 223 FYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWI----PHLKRGHIEDC 296 (322)
T ss_dssp HHHHHHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSC--GGGGTTGGGTC----TTCEEEEETTC
T ss_pred HHHHHHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCC--HHHHHHHHHhC----CCCEEEEECCC
Confidence 00 0111122346789999999999999998 77655554333 45689999999
Q ss_pred CCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 716 HHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
||... .+..+++.+.+.+||+++-.
T Consensus 297 gH~~~-~e~p~~v~~~i~~FL~~~~~ 321 (322)
T d1zd3a2 297 GHWTQ-MDKPTEVNQILIKWLDSDAR 321 (322)
T ss_dssp CSCHH-HHSHHHHHHHHHHHHHHHTC
T ss_pred CCchH-HhCHHHHHHHHHHHHhhcCC
Confidence 99875 56678899999999998753
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.66 E-value=1.3e-15 Score=147.95 Aligned_cols=200 Identities=11% Similarity=0.019 Sum_probs=128.6
Q ss_pred cEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004475 513 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 592 (751)
Q Consensus 513 P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l 592 (751)
|.||++||.+. +...|. .+...|+++||.|++ ++.+|+|.+...........+........+
T Consensus 3 ~~vvllHG~~~-----------~~~~w~----~~~~~L~~~g~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T d1xkla_ 3 KHFVLVHGACH-----------GGWSWY----KLKPLLEAAGHKVTA---LDLAASGTDLRKIEELRTLYDYTLPLMELM 64 (258)
T ss_dssp CEEEEECCTTC-----------CGGGGT----THHHHHHHTTCEEEE---CCCTTSTTCCCCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCC-----------CHHHHH----HHHHHHHhCCCEEEE---ecCCCCCCCCCCCCCCcchHHHHHHHhhhh
Confidence 57899999641 112222 456688889999999 677788887543222111122222333333
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC------------------------cccc
Q 004475 593 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG------------------------FQTE 648 (751)
Q Consensus 593 ~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~------------------------~~~~ 648 (751)
.... ...++.++|||+||.+++.++.++|++++.+|++++.......... ....
T Consensus 65 ~~~~--~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (258)
T d1xkla_ 65 ESLS--ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEE 142 (258)
T ss_dssp HTSC--SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTS
T ss_pred hccc--ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Confidence 3322 2357999999999999999999999999999998875331111000 0000
Q ss_pred cccch-----------------hh--------------HHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHH
Q 004475 649 FRTLW-----------------EA--------------TNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 697 (751)
Q Consensus 649 ~~~~~-----------------~~--------------~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~ 697 (751)
....+ .. ...............+++|+++++|++|..+| +...+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~--~~~~~~~~ 220 (258)
T d1xkla_ 143 PLTSMFFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIP--EEFQRWQI 220 (258)
T ss_dssp CCEEEECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTT--HHHHHHHH
T ss_pred hcccccccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCC--HHHHHHHH
Confidence 00000 00 00111112233445677999999999999998 88888887
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 698 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
+.+. .+++++++++||..+ .+..+++.+.+.+|++++
T Consensus 221 ~~~~----~~~~~~i~~~gH~~~-~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 221 DNIG----VTEAIEIKGADHMAM-LCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp HHHC----CSEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred HHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHhc
Confidence 7764 458999999999865 567888999999998875
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.66 E-value=4.2e-16 Score=153.38 Aligned_cols=211 Identities=11% Similarity=0.037 Sum_probs=132.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|..++...+- + -|.||++||.|... ..+..|. ... ..+++||.|++ ++.+|+
T Consensus 10 ~~G~~~~Y~~~G--------~--G~pvvllHG~~~~~-----------~~~~~~~-~~~-~~l~~~~~vi~---~Dl~G~ 63 (271)
T d1uk8a_ 10 AAGVLTNYHDVG--------E--GQPVILIHGSGPGV-----------SAYANWR-LTI-PALSKFYRVIA---PDMVGF 63 (271)
T ss_dssp ETTEEEEEEEEC--------C--SSEEEEECCCSTTC-----------CHHHHHT-TTH-HHHTTTSEEEE---ECCTTS
T ss_pred ECCEEEEEEEEe--------e--CCeEEEECCCCCCc-----------cHHHHHH-HHH-HHHhCCCEEEE---EeCCCC
Confidence 477777765441 1 25788999964211 1121111 112 22457999999 666788
Q ss_pred CCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC-
Q 004475 569 GDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG- 644 (751)
Q Consensus 569 g~~~~~~---~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~- 644 (751)
|.+.... ...+...+++ ..+.+.- +.+++.++||||||.+|+.++.++|++++++|+..+..........
T Consensus 64 G~S~~~~~~~~~~~~~~~~~----~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~ 137 (271)
T d1uk8a_ 64 GFTDRPENYNYSKDSWVDHI----IGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGL 137 (271)
T ss_dssp TTSCCCTTCCCCHHHHHHHH----HHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHH
T ss_pred CCccccccccccccccchhh----hhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhh
Confidence 8764322 1233334433 3333332 3468999999999999999999999999999988775331111000
Q ss_pred -----cccc---------------cccchh-------------hHHHH-------------HhcCcccccCCCCCCEEEE
Q 004475 645 -----FQTE---------------FRTLWE-------------ATNVY-------------IEMSPITHANKIKKPILII 678 (751)
Q Consensus 645 -----~~~~---------------~~~~~~-------------~~~~~-------------~~~~~~~~~~~~~~P~li~ 678 (751)
.... ...... ..+.+ ........+.++++|+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii 217 (271)
T d1uk8a_ 138 NAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLII 217 (271)
T ss_dssp HHHHTCCSCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEE
T ss_pred hhhhhccchhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEE
Confidence 0000 000000 00000 0111223467889999999
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 679 HGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 679 ~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
+|++|..+| +..+..+.+.+. .+++++++++||... .+..+++.+.+.+||++
T Consensus 218 ~G~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 218 HGREDQVVP--LSSSLRLGELID----RAQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp EETTCSSSC--HHHHHHHHHHCT----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred ecCCCCCcC--HHHHHHHHHhCC----CCEEEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 999999998 888877776653 468999999999865 56778899999999975
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.4e-16 Score=156.25 Aligned_cols=206 Identities=12% Similarity=0.033 Sum_probs=137.4
Q ss_pred ceEEEEEEcCCCc-eEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~~~~-~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
..+.+.+.+.++. ++.+++++|+++++.+ ++|+|+++||+++.. . . ......+..+.+|+.|+
T Consensus 12 ~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~--~yPvi~~lhG~~~~~--------~----~--~~~~~~~~~~~~~~~vV 75 (265)
T d2gzsa1 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMD--------R----L--DDELLKQLSEKTPPVIV 75 (265)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHHHH--------H----C--CHHHHHHHTTSCCCEEE
T ss_pred eeEEEEEEcCCCCEEEEEEEEcCCCCCCCC--CceEEEEecCcchhh--------h----H--HHHHHHHHHhcCCCeEE
Confidence 4678889988875 7999999999987654 599999999963211 0 0 00112233346789888
Q ss_pred EcCCCCCCCCCCC----------------------CCC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 004475 559 AGPSIPIIGEGDK----------------------LPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 615 (751)
Q Consensus 559 ~~~~~~~~g~g~~----------------------~~~-~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a 615 (751)
.+.+....+.+.. ... ............+++.++.++..+|+.+++|+|+|+||+++
T Consensus 76 ~v~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a 155 (265)
T d2gzsa1 76 AVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFV 155 (265)
T ss_dssp EEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHH
T ss_pred EecCCCCCcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHH
Confidence 7443322221100 000 00001111233456677777777899999999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCC--------CCCCC
Q 004475 616 AHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEV--------DDKVG 687 (751)
Q Consensus 616 ~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~--------D~~vp 687 (751)
+.++.+. +.+.++++.+|...+ .....+...++.........|+++.+|+. |..++
T Consensus 156 ~~~~~~~-~~f~~~~a~s~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~ 219 (265)
T d2gzsa1 156 LDSWLSS-SYFRSYYSASPSLGR---------------GYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGV 219 (265)
T ss_dssp HHHHHHC-SSCSEEEEESGGGST---------------THHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CH
T ss_pred HHHHHcC-cccCEEEEECCcccc---------------cchhhhhccccccccccCCCcEEEEcCCcccccccccccchh
Confidence 9987765 677888888885421 22233333344445556678899999977 56667
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 004475 688 LFPMQAERFFDALKGHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 688 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 719 (751)
..++++++++|+++|+++++.+|||++|+.
T Consensus 220 --~~~~~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 220 --LSKIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp --HHHHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred --HHHHHHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 889999999999999999999999999974
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.66 E-value=4.6e-15 Score=145.81 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=134.7
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
+|.+.||.++....+- + .|.||++||.+. ....| ......|+++||.|++ .+
T Consensus 2 ~f~~~dG~~i~y~~~G--------~--g~pvvllHG~~~-----------~~~~~----~~~~~~l~~~~~~vi~---~D 53 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDWG--------S--GQPIVFSHGWPL-----------NADSW----ESQMIFLAAQGYRVIA---HD 53 (273)
T ss_dssp EEECTTSCEEEEEEES--------C--SSEEEEECCTTC-----------CGGGG----HHHHHHHHHTTCEEEE---EC
T ss_pred EEEeeCCcEEEEEEEC--------C--CCeEEEECCCCC-----------CHHHH----HHHHHHHHhCCCEEEE---Ee
Confidence 5677899888776552 1 356889999641 11111 2445678889999999 56
Q ss_pred CCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH-HHhCCCceeEEEEccCCCCCCCC
Q 004475 565 IIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL-LAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 565 ~~g~g~~~~~~--~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~-a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+|+|.+.... .......+|+.++++.+ +..+..++|||+||.+++.+ +.++|+++++++++++.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~ 127 (273)
T d1a8sa_ 54 RRGHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLK 127 (273)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred chhcCccccccccccccchHHHHHHHHHhc------CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccc
Confidence 66777764432 23455566666665543 34578899999988655554 55678999998888764321110
Q ss_pred cc----Cccc-------------------------------ccccchh--------------------hHHHHHhcCccc
Q 004475 642 PF----GFQT-------------------------------EFRTLWE--------------------ATNVYIEMSPIT 666 (751)
Q Consensus 642 ~~----~~~~-------------------------------~~~~~~~--------------------~~~~~~~~~~~~ 666 (751)
.. .... .....+. ....+.......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (273)
T d1a8sa_ 128 TEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTE 207 (273)
T ss_dssp CSSCTTSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHH
T ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhH
Confidence 00 0000 0000000 000112223334
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 667 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 667 ~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.+.++++|+|+++|++|..+| ...+..+.+.+. ..++++++|+++|... .+..+++.+.+++||+
T Consensus 208 ~~~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 208 DLKKIDVPTLVVHGDADQVVP--IEASGIASAALV---KGSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp HHHTCCSCEEEEEETTCSSSC--STTTHHHHHHHS---TTCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred HHHhhccceEEEecCCCCCCC--HHHHHHHHHHhC---CCCEEEEECCCCCchH-HhCHHHHHHHHHHHcC
Confidence 567889999999999999998 676666665542 3468999999999875 5677888999999986
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.66 E-value=6.1e-15 Score=145.25 Aligned_cols=197 Identities=15% Similarity=0.065 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
-|+||++||.+.. ...| ......|+++||.|++ .+.+|+|.+... ........+|+.+++
T Consensus 23 G~~ivllHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~---~D~~G~G~S~~~~~~~~~~~~~~dl~~~l 84 (277)
T d1brta_ 23 GQPVVLIHGFPLS-----------GHSW----ERQSAALLDAGYRVIT---YDRRGFGQSSQPTTGYDYDTFAADLNTVL 84 (277)
T ss_dssp SSEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEE---EeCCCCCcccccccccchhhhhhhhhhhh
Confidence 3678999996411 1111 2345577889999999 556677776432 223566777777777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEccCCCCCCCCccCccc-----cc-----------cc-
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT-----EF-----------RT- 651 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~-----~~-----------~~- 651 (751)
+.+ +.+++.++|||||| .++..++.++|++++++|++++............. .. ..
T Consensus 85 ~~l------~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
T d1brta_ 85 ETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYA 158 (277)
T ss_dssp HHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHH
T ss_pred hcc------CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchh
Confidence 666 23589999999997 45556677889999999998865321111000000 00 00
Q ss_pred -------ch------------hh-H-HH------------HH-----hcCcccccCCCCCCEEEEEcCCCCCCCCChHHH
Q 004475 652 -------LW------------EA-T-NV------------YI-----EMSPITHANKIKKPILIIHGEVDDKVGLFPMQA 693 (751)
Q Consensus 652 -------~~------------~~-~-~~------------~~-----~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~ 693 (751)
.+ .. . .. +. .......+.++++|+++++|++|..++ ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~--~~~~ 236 (277)
T d1brta_ 159 FYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLP--IENT 236 (277)
T ss_dssp HHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSC--GGGT
T ss_pred hhhhccccccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcC--HHHH
Confidence 00 00 0 00 00 001122356678999999999999998 6654
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 694 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 694 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
.+..... ...++++++++++|... .+..+.+.+.+.+||++
T Consensus 237 ~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 237 ARVFHKA---LPSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAK 277 (277)
T ss_dssp HHHHHHH---CTTSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CCCCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 4433322 23568999999999875 56778889999999973
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.65 E-value=9.4e-16 Score=154.53 Aligned_cols=122 Identities=13% Similarity=0.031 Sum_probs=84.0
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
++-.+...+|.++....+-.++ .|.||++||++.. ...+ .....++..+|.|++
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~~--------g~pvvllHG~~g~-----------~~~~-----~~~~~~l~~~~~Vi~-- 65 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGG-----------GCND-----KMRRFHDPAKYRIVL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTT-----------CCCG-----GGGGGSCTTTEEEEE--
T ss_pred CCCEEEeCCCcEEEEEEecCCC--------CCEEEEECCCCCC-----------ccch-----HHHhHHhhcCCEEEE--
Confidence 5555556688888888775433 3668889996411 0111 112233568999999
Q ss_pred CCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004475 562 SIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 636 (751)
Q Consensus 562 ~~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 636 (751)
.+.+|+|.+.... ....+..+|+..+++.+ ..+++.|+||||||.+++.+|.++|++++++++.++..
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~dl~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 66 -FDQRGSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp -ECCTTSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred -EeccccCCCCccccccchhHHHHHHHHHHHHHhh------ccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 6667888775321 12455566666666654 24689999999999999999999999999999888753
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.65 E-value=4.8e-15 Score=145.38 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=135.0
Q ss_pred EEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC
Q 004475 485 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 564 (751)
Q Consensus 485 ~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~ 564 (751)
+|...||.++....+- + .|+||++||.+.. ...| ......|+++||.|++ ++
T Consensus 2 ~f~~~dG~~l~y~~~G--------~--g~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~---~D 53 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDWG--------S--GKPVLFSHGWLLD-----------ADMW----EYQMEYLSSRGYRTIA---FD 53 (271)
T ss_dssp EEECTTSCEEEEEEES--------S--SSEEEEECCTTCC-----------GGGG----HHHHHHHHTTTCEEEE---EC
T ss_pred EEEeECCeEEEEEEEc--------C--CCeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEE---Ee
Confidence 4566788888765441 1 3568899996411 1111 2345577889999999 56
Q ss_pred CCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH-HHHhCCCceeEEEEccCCCCCCCC
Q 004475 565 IIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH-LLAHAPHLFCCGIARSGSYNKTLT 641 (751)
Q Consensus 565 ~~g~g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~-~a~~~p~~~~~~v~~~~~~d~~~~ 641 (751)
.+|+|.+... ....+...+|+.++++.+ +.+++.++|||+||.+++. ++.++|+++.++++..+.......
T Consensus 54 ~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~ 127 (271)
T d1va4a_ 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQ 127 (271)
T ss_dssp CTTSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBC
T ss_pred ccccccccccccccccccccccceeeeeec------CCCcceeeccccccccccccccccccceeeEEEeeccccccccc
Confidence 6677776432 223455566666655554 3468999999998876655 566789999999988875432111
Q ss_pred ccCccccc---------------------------------ccchh--------------------hHHHHHhcCccccc
Q 004475 642 PFGFQTEF---------------------------------RTLWE--------------------ATNVYIEMSPITHA 668 (751)
Q Consensus 642 ~~~~~~~~---------------------------------~~~~~--------------------~~~~~~~~~~~~~~ 668 (751)
........ ..... ....+........+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (271)
T d1va4a_ 128 KPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDM 207 (271)
T ss_dssp BTTBTTSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHH
T ss_pred chhhhhhhhhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhh
Confidence 10000000 00000 00011112223345
Q ss_pred CCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 669 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 669 ~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
.++++|+|+++|++|..+| +..+.++.+.+. ..++++++|++||... .+..+.+.+.+.+||+
T Consensus 208 ~~i~~Pvl~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~ 270 (271)
T d1va4a_ 208 AKIDVPTLVIHGDGDQIVP--FETTGKVAAELI---KGAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp HHCCSCEEEEEETTCSSSC--GGGTHHHHHHHS---TTCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred hhcccceeecccCCCCCCC--HHHHHHHHHHhC---CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHC
Confidence 6789999999999999998 777777765542 2468999999999865 4567888899999986
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=1e-15 Score=141.16 Aligned_cols=179 Identities=11% Similarity=-0.076 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004475 514 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 593 (751)
Q Consensus 514 ~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~ 593 (751)
.||++||.+ ++ ....|...+...|+++||.|++++. +|+|... .++..+.++.+.
T Consensus 3 ~V~~vHG~~-----------~~--~~~~~~~~l~~~L~~~G~~v~~~d~---p~~~~~~---------~~~~~~~l~~~~ 57 (186)
T d1uxoa_ 3 QVYIIHGYR-----------AS--STNHWFPWLKKRLLADGVQADILNM---PNPLQPR---------LEDWLDTLSLYQ 57 (186)
T ss_dssp EEEEECCTT-----------CC--TTSTTHHHHHHHHHHTTCEEEEECC---SCTTSCC---------HHHHHHHHHTTG
T ss_pred EEEEECCCC-----------CC--cchhHHHHHHHHHHhCCCEEEEecc---CCCCcch---------HHHHHHHHHHHH
Confidence 499999953 11 1222334567788999999999544 4554421 222223333332
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCC
Q 004475 594 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKI 671 (751)
Q Consensus 594 ~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (751)
. ....+++++||||||.+++.++.++|+. +.++++.++.............. .....+.....++
T Consensus 58 ~---~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 124 (186)
T d1uxoa_ 58 H---TLHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQMLDEF----------TQGSFDHQKIIES 124 (186)
T ss_dssp G---GCCTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGGGGG----------TCSCCCHHHHHHH
T ss_pred h---ccCCCcEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhhhhhhh----------hcccccccccccC
Confidence 2 3457899999999999999999999864 34444555543221111000000 0000111112234
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCcc--ccHHHHHHHHHHHHH
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR--ENVMHVIWETDRWLQ 737 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~ 737 (751)
.+|+|++||++|.+|| +.+++++++.+ +++++++++++|..... ....+..+.+.+||.
T Consensus 125 ~~p~lvi~g~~D~~vp--~~~~~~l~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 125 AKHRAVIASKDDQIVP--FSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp EEEEEEEEETTCSSSC--HHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCC--HHHHHHHHHHc-----CCEEEEeCCCCCcCccccCcccHHHHHHHHHHHc
Confidence 6899999999999999 99999988776 24799999999965422 234567778888875
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.64 E-value=6.3e-16 Score=155.57 Aligned_cols=213 Identities=13% Similarity=0.036 Sum_probs=135.7
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|.++...-+-+.+ ..|+||++||.+.. ...| ......|+++||.|++ .+.+|+
T Consensus 31 ~~g~~~~y~~~G~~~-------~~p~llllHG~~~~-----------~~~~----~~~~~~l~~~~~~vi~---~Dl~G~ 85 (310)
T d1b6ga_ 31 YPGLRAHYLDEGNSD-------AEDVFLCLHGEPTW-----------SYLY----RKMIPVFAESGARVIA---PDFFGF 85 (310)
T ss_dssp CTTCEEEEEEEECTT-------CSCEEEECCCTTCC-----------GGGG----TTTHHHHHHTTCEEEE---ECCTTS
T ss_pred CCCEEEEEEEecCCC-------CCCEEEEECCCCCc-----------hHHH----HHHHHHhhccCceEEE---eeecCc
Confidence 467777766554432 25899999996421 1112 2345678889999999 677788
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccC
Q 004475 569 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 644 (751)
Q Consensus 569 g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~ 644 (751)
|.+.... .......+|+.++++.+ +.+++.++||||||.+|+.+|.++|++++++|++++..........
T Consensus 86 G~S~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~ 159 (310)
T d1b6ga_ 86 GKSDKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQP 159 (310)
T ss_dssp TTSCEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCT
T ss_pred cccccccccccccccccccchhhhhhhc------cccccccccceecccccccchhhhccccceEEEEcCccCCCcccch
Confidence 8875321 13455666666666654 2468999999999999999999999999999998765321100000
Q ss_pred ----ccc----------------c-c--c------cch---hhHHHHHh--------------------cC---------
Q 004475 645 ----FQT----------------E-F--R------TLW---EATNVYIE--------------------MS--------- 663 (751)
Q Consensus 645 ----~~~----------------~-~--~------~~~---~~~~~~~~--------------------~~--------- 663 (751)
+.. . . . ... .....+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (310)
T d1b6ga_ 160 AFSAFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTE 239 (310)
T ss_dssp HHHHTTTSSTTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred hHHHHhhcchhhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhh
Confidence 000 0 0 0 000 00000000 00
Q ss_pred -cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 664 -PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 664 -~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
......++++|+|+++|++|..++ +.....+.+.+... .++++++++||... .+..+.+.+.+.+||++
T Consensus 240 ~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~~~---~~~~~i~~~GH~~~-~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 240 AISFWQNDWNGQTFMAIGMKDKLLG--PDVMYPMKALINGC---PEPLEIADAGHFVQ-EFGEQVAREALKHFAET 309 (310)
T ss_dssp HHHHHHHTCCSEEEEEEETTCSSSS--HHHHHHHHHHSTTC---CCCEEETTCCSCGG-GGHHHHHHHHHHHHHHT
T ss_pred hhHHhhcccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCCC---ccEEEECCCcCchh-hhCHHHHHHHHHHHHhC
Confidence 001124678999999999999998 77777776655432 35788999999764 55566777788888874
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.63 E-value=9.2e-14 Score=138.34 Aligned_cols=267 Identities=15% Similarity=0.066 Sum_probs=167.7
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|.++|+.+ ++..+.. +.+......+|||||++|+... .....|.++|+.+++.........
T Consensus 13 ~v~v~D~~t----~~~~~~i--~~g~~p~~va~spdG~~l~v~~---------~~~~~i~v~d~~t~~~~~~~~~~~--- 74 (301)
T d1l0qa2 13 NISVIDVTS----NKVTATI--PVGSNPMGAVISPDGTKVYVAN---------AHSNDVSIIDTATNNVIATVPAGS--- 74 (301)
T ss_dssp EEEEEETTT----TEEEEEE--ECSSSEEEEEECTTSSEEEEEE---------GGGTEEEEEETTTTEEEEEEECSS---
T ss_pred EEEEEECCC----CeEEEEE--ECCCCceEEEEeCCCCEEEEEE---------CCCCEEEEEECCCCceeeeeeccc---
Confidence 599999988 8766543 2333456789999999997643 344689999999887554332222
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (751)
....++|++||+.+++..... ..+.+++.
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 104 (301)
T d1l0qa2 75 --SPQGVAVSPDGKQVYVTNMAS------------------------------------------------STLSVIDTT 104 (301)
T ss_dssp --SEEEEEECTTSSEEEEEETTT------------------------------------------------TEEEEEETT
T ss_pred --ccccccccccccccccccccc------------------------------------------------ceeeecccc
Confidence 246789999999888764320 35666777
Q ss_pred CCC-ceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 165 DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 165 ~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+++ ...+..........|+|||+++++.... ...+.+++..+.......... ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------------~~ 159 (301)
T d1l0qa2 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTVSVG-------------RS 159 (301)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEEECC-------------SS
T ss_pred cceeeeeccccccceEEEeecCCCeeeeeecc------------ccceeeeeccccceeeecccC-------------CC
Confidence 553 3444444566788999999999887543 235678888766544322211 22
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQ 322 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~ 322 (751)
+..+.++||++. ++.+.. ....+.+.... ............... ..|+++|+.++..... ...
T Consensus 160 ~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 160 PKGIAVTPDGTK-VYVANF-----------DSMSISVIDTV---TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEECTTSSE-EEEEET-----------TTTEEEEEETT---TTEEEEEEECSSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceEEEeeccccc-eeeecc-----------ccccccccccc---ceeeeecccccCCcceeecccccccccccccc-cee
Confidence 457899999998 555431 11234444442 222222233334445 8899999998765422 233
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..|+++|+.++ +.......... ... ++|||||++|+.... ....|.+||++
T Consensus 224 ~~v~v~D~~t~--~~~~~~~~~~~-~~~------va~spdg~~l~va~~--------------------~~~~i~v~D~~ 274 (301)
T d1l0qa2 224 NTVSMIDTGTN--KITARIPVGPD-PAG------IAVTPDGKKVYVALS--------------------FCNTVSVIDTA 274 (301)
T ss_dssp CEEEEEETTTT--EEEEEEECCSS-EEE------EEECTTSSEEEEEET--------------------TTTEEEEEETT
T ss_pred eeeeeeecCCC--eEEEEEcCCCC-EEE------EEEeCCCCEEEEEEC--------------------CCCeEEEEECC
Confidence 57899998875 22222221111 111 889999998876651 23379999999
Q ss_pred CCceeEEe
Q 004475 403 TGSKERIW 410 (751)
Q Consensus 403 ~g~~~~l~ 410 (751)
+++.....
T Consensus 275 t~~~~~~~ 282 (301)
T d1l0qa2 275 TNTITATM 282 (301)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 99765443
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.62 E-value=3.2e-15 Score=145.13 Aligned_cols=180 Identities=8% Similarity=-0.009 Sum_probs=116.6
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.....|.++||.|++ .+.+|+|.+..... ..+...+++.+++ .+.. ..+++.++||||||.+++.++..
T Consensus 20 ~~~~~L~~~g~~Via---~Dl~G~G~S~~~~~~~~~~~~~~~~l~~~~---~~~~--~~~~~~lvGhS~Gg~ia~~~a~~ 91 (256)
T d3c70a1 20 KLKPLLEALGHKVTA---LDLAASGVDPRQIEEIGSFDEYSEPLLTFL---EALP--PGEKVILVGESCGGLNIAIAADK 91 (256)
T ss_dssp THHHHHHHTTCEEEE---ECCTTSTTCSCCGGGCCSHHHHTHHHHHHH---HHSC--TTCCEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEE---EcCCCCCCCCCCCCCCCCHHHHHHHhhhhh---hhhc--cccceeecccchHHHHHHHHhhc
Confidence 356678889999999 67778887754322 2334444444433 3332 24689999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCccCcc--------------------cc----c-cc---chh---------hH--------
Q 004475 622 APHLFCCGIARSGSYNKTLTPFGFQ--------------------TE----F-RT---LWE---------AT-------- 656 (751)
Q Consensus 622 ~p~~~~~~v~~~~~~d~~~~~~~~~--------------------~~----~-~~---~~~---------~~-------- 656 (751)
+|++++++|++++............ .. . .. ... ..
T Consensus 92 ~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T d3c70a1 92 YCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKML 171 (256)
T ss_dssp HGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred CchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhhhhhhhcchhhHHHhhhh
Confidence 9999999999887543211110000 00 0 00 000 00
Q ss_pred --------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHH
Q 004475 657 --------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 728 (751)
Q Consensus 657 --------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 728 (751)
..............+++|+++++|++|..+| +...+.+.+.+ ..+++++++++||..+ .+..+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~----p~~~~~~i~~agH~~~-~e~P~~~ 244 (256)
T d3c70a1 172 TRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL--PEFQLWQIENY----KPDKVYKVEGGDHKLQ-LTKTKEI 244 (256)
T ss_dssp CCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSC--HHHHHHHHHHS----CCSEEEECCSCCSCHH-HHSHHHH
T ss_pred hhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCC--HHHHHHHHHHC----CCCEEEEECCCCCchH-HhCHHHH
Confidence 0000111122233457999999999999998 77776666554 3458999999999876 6677888
Q ss_pred HHHHHHHHHHH
Q 004475 729 IWETDRWLQKY 739 (751)
Q Consensus 729 ~~~~~~fl~~~ 739 (751)
.+.+.+|++++
T Consensus 245 ~~~l~~~~~~~ 255 (256)
T d3c70a1 245 AEILQEVADTY 255 (256)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 88888888764
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.62 E-value=1.2e-15 Score=151.76 Aligned_cols=210 Identities=16% Similarity=0.103 Sum_probs=135.1
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|.++....+-|++ .|+||++||.+. +...|. .....| .+||.|++ .+.+|+
T Consensus 14 ~~g~~i~y~~~G~~~--------~p~lvllHG~~~-----------~~~~~~----~~~~~L-~~~~~vi~---~d~~G~ 66 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD--------GTPVLFLHGNPT-----------SSYLWR----NIIPHV-APSHRCIA---PDLIGM 66 (291)
T ss_dssp ETTEEEEEEEESCSS--------SSCEEEECCTTC-----------CGGGGT----TTHHHH-TTTSCEEE---ECCTTS
T ss_pred ECCEEEEEEEeCCCC--------CCeEEEECCCCC-----------CHHHHH----HHHHHH-hcCCEEEE---EeCCCC
Confidence 467888887776543 367999999641 112222 223444 56999999 566677
Q ss_pred CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cCc
Q 004475 569 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGF 645 (751)
Q Consensus 569 g~~~~~--~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~~~ 645 (751)
|.+... ....++..+|+.++++.+ +..++.++||||||.+++.++.++|+++++++++++........ +..
T Consensus 67 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~ 140 (291)
T d1bn7a_ 67 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPE 140 (291)
T ss_dssp TTSCCCSCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCH
T ss_pred ccccccccccchhHHHHHHhhhhhhh------ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhh
Confidence 776432 233456666666666554 34689999999999999999999999999999877543211000 000
Q ss_pred -----------cc-------------------ccccch--hhHHHH-----------------HhcC-------------
Q 004475 646 -----------QT-------------------EFRTLW--EATNVY-----------------IEMS------------- 663 (751)
Q Consensus 646 -----------~~-------------------~~~~~~--~~~~~~-----------------~~~~------------- 663 (751)
.. .....+ .....+ ....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T d1bn7a_ 141 FARETFQAFRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVE 220 (291)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHH
T ss_pred hhhhHHHHHhhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhh
Confidence 00 000000 000000 0000
Q ss_pred -cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 664 -PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 664 -~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
....+.++++|+|+++|++|.++| ...+..+.+.++ .++++++++++|... .+..+++.+.+.+||+.
T Consensus 221 ~~~~~~~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 221 AYMNWLHQSPVPKLLFWGTPGVLIP--PAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPG 289 (291)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSC--HHHHHHHHHHST----TEEEEEEEEESSCGG-GTCHHHHHHHHHHHSGG
T ss_pred hhhhhhhcCCCCEEEEEeCCCCCcC--HHHHHHHHHHCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHHh
Confidence 011235688999999999999998 888877776653 468999999999765 56677888899999864
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=6.3e-15 Score=144.45 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=145.2
Q ss_pred eEEEEEEcC-CCceEEEEEEcCCCCCCC---CCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeE
Q 004475 481 KEMIKYQRK-DGVPLTATLYLPPGYDQS---KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 556 (751)
Q Consensus 481 ~e~i~~~~~-~~~~i~~~~~~P~~~~~~---~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 556 (751)
..++++.+. -+.++...+|+|+++... +++++|+|+++||.+ ++...|.... .........|++
T Consensus 14 ~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~-----------~~~~~w~~~~-~~~~~~~~~~~~ 81 (299)
T d1pv1a_ 14 LIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLT-----------CTPDNASEKA-FWQFQADKYGFA 81 (299)
T ss_dssp EEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTT-----------CCHHHHHHHS-CHHHHHHHHTCE
T ss_pred EEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCC-----------CCHHHHHHhh-hHHHHHHHcCCc
Confidence 445556653 467899999999987532 345799999999953 1112221111 123344567999
Q ss_pred EEEcCCCCC-------------CCCCCCC----------CCchhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeC
Q 004475 557 VLAGPSIPI-------------IGEGDKL----------PNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHS 609 (751)
Q Consensus 557 v~~~~~~~~-------------~g~g~~~----------~~~~~~~~~~~d~~~~v~~l~~~----~~id~~~i~l~G~S 609 (751)
|+.+...+. .|...+. ....+.+-+.+++...|+..-.. ...++++.+|.|+|
T Consensus 82 vv~~~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~S 161 (299)
T d1pv1a_ 82 IVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHS 161 (299)
T ss_dssp EEECCSSCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEET
T ss_pred eecCCCcccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeec
Confidence 988432110 0111110 01123344455555555443211 11234689999999
Q ss_pred hHHHHHHHHHHh--CCCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCccccc---CCC-CCCEEEEEcCCC
Q 004475 610 YGAFMTAHLLAH--APHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA---NKI-KKPILIIHGEVD 683 (751)
Q Consensus 610 ~GG~~a~~~a~~--~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~P~li~~G~~D 683 (751)
|||+.|+.++++ +|+++.++++.+|..+.....+...............+...++...+ .+. ..++++.+|++|
T Consensus 162 mGG~gAl~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D 241 (299)
T d1pv1a_ 162 MGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSD 241 (299)
T ss_dssp HHHHHHHHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTTC
T ss_pred ccHHHHHHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCCC
Confidence 999999999986 48999999999998765433221111111001111122233333222 222 367999999999
Q ss_pred CCCCCChH-HHHHHHHHHHhCCCc--EEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHhc
Q 004475 684 DKVGLFPM-QAERFFDALKGHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 741 (751)
Q Consensus 684 ~~vp~~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 741 (751)
...+ .. ..+.+.+++++++.+ +++...||.+|.+. -+...+.+.+.|+.++|+
T Consensus 242 ~~~~--~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~---yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 242 PFLE--EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTTT--TTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred cchh--hhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 9875 32 356788888877754 77888898889853 366778888999999885
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.60 E-value=8.9e-13 Score=131.02 Aligned_cols=274 Identities=9% Similarity=0.029 Sum_probs=167.7
Q ss_pred EEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCce
Q 004475 45 IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKI 124 (751)
Q Consensus 45 iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (751)
.|||.. .....|.++|+++++..+-..... ....++|||||++|+....
T Consensus 3 ~~yV~~--------~~~~~v~v~D~~t~~~~~~i~~g~-----~p~~va~spdG~~l~v~~~------------------ 51 (301)
T d1l0qa2 3 FAYIAN--------SESDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANA------------------ 51 (301)
T ss_dssp EEEEEE--------TTTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEG------------------
T ss_pred EEEEEE--------CCCCEEEEEECCCCeEEEEEECCC-----CceEEEEeCCCCEEEEEEC------------------
Confidence 467654 344679999999998544332222 2467899999999986632
Q ss_pred eeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCCceEEeeeeCCCCceEEEEEecCCccccc
Q 004475 125 QSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~ 202 (751)
....|.++|+ +++ ...+..+.....+.|++||+++++....
T Consensus 52 ------------------------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 94 (301)
T d1l0qa2 52 ------------------------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA------- 94 (301)
T ss_dssp ------------------------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT-------
T ss_pred ------------------------------CCCEEEEEECCCCceeeeeeccccccccccccccccccccccc-------
Confidence 1147888999 663 3444444566789999999999886543
Q ss_pred ccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeecc
Q 004475 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQP 282 (751)
Q Consensus 203 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (751)
...+.+++..+++........ .....+.|+|||+. +++... ....+.+++
T Consensus 95 -----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~dg~~-~~~~~~-----------~~~~~~~~~ 144 (301)
T d1l0qa2 95 -----SSTLSVIDTTSNTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTNN-----------GDKTVSVIN 144 (301)
T ss_dssp -----TTEEEEEETTTTEEEEEEECS-------------SSEEEEEECTTSSE-EEEEET-----------TTTEEEEEE
T ss_pred -----cceeeecccccceeeeecccc-------------ccceEEEeecCCCe-eeeeec-----------cccceeeee
Confidence 335778888776544332211 12347899999998 555431 123566666
Q ss_pred CCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCC
Q 004475 283 AEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS 361 (751)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~sp 361 (751)
.. ............... +.++||++.++..... ...++..+.... ............ .. +++++
T Consensus 145 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~-~~------~~~~~ 209 (301)
T d1l0qa2 145 TV---TKAVINTVSVGRSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTN--SVIDTVKVEAAP-SG------IAVNP 209 (301)
T ss_dssp TT---TTEEEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT--EEEEEEECSSEE-EE------EEECT
T ss_pred cc---ccceeeecccCCCceEEEeeccccceeeeccc---ccccccccccce--eeeecccccCCc-ce------eeccc
Confidence 53 222222223333345 8899999988776522 234444444442 222222211111 11 67999
Q ss_pred CCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEE
Q 004475 362 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 441 (751)
Q Consensus 362 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 441 (751)
||+.+++...+ .....|++||+.+++.......... + ..++|||||++|+
T Consensus 210 ~g~~~~v~~~~------------------~~~~~v~v~D~~t~~~~~~~~~~~~-----~-------~~va~spdg~~l~ 259 (301)
T d1l0qa2 210 EGTKAYVTNVD------------------KYFNTVSMIDTGTNKITARIPVGPD-----P-------AGIAVTPDGKKVY 259 (301)
T ss_dssp TSSEEEEEEEC------------------SSCCEEEEEETTTTEEEEEEECCSS-----E-------EEEEECTTSSEEE
T ss_pred ccccccccccc------------------ceeeeeeeeecCCCeEEEEEcCCCC-----E-------EEEEEeCCCCEEE
Confidence 99998776632 1234789999998876544332211 2 2368999999887
Q ss_pred EEEecCCCCCeEEEEEcCCCcee
Q 004475 442 TSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 442 ~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
++... -..|.++|+.+++..
T Consensus 260 va~~~---~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 260 VALSF---CNTVSVIDTATNTIT 279 (301)
T ss_dssp EEETT---TTEEEEEETTTTEEE
T ss_pred EEECC---CCeEEEEECCCCeEE
Confidence 76533 347999999998754
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.60 E-value=1.3e-14 Score=143.06 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCC--chhHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 589 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~v 589 (751)
.|.||++||.+..+ ..| ......++++||.|++ ++.+|+|.+... ....+...+|+.+++
T Consensus 23 g~~illlHG~~~~~-----------~~~----~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~di~~~i 84 (279)
T d1hkha_ 23 GQPVVLIHGYPLDG-----------HSW----ERQTRELLAQGYRVIT---YDRRGFGGSSKVNTGYDYDTFAADLHTVL 84 (279)
T ss_dssp SEEEEEECCTTCCG-----------GGG----HHHHHHHHHTTEEEEE---ECCTTSTTSCCCSSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEE---EechhhCCccccccccchhhhhhhhhhhh
Confidence 47799999964211 111 2345567889999999 666777776432 223556677777777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEccCCCCCCCCcc----Cccccc-----------ccch
Q 004475 590 EEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARSGSYNKTLTPF----GFQTEF-----------RTLW 653 (751)
Q Consensus 590 ~~l~~~~~id~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~----~~~~~~-----------~~~~ 653 (751)
+.+ +.+++.++|||||| .++..++.++|+++.+++++++......... ...... ...|
T Consensus 85 ~~l------~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
T d1hkha_ 85 ETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAW 158 (279)
T ss_dssp HHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHH
T ss_pred hhc------CcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 665 33589999999996 5566667778999999999876532111000 000000 0000
Q ss_pred --------------------hh-H----HHHHhcC-----------------cccccCCCCCCEEEEEcCCCCCCCCChH
Q 004475 654 --------------------EA-T----NVYIEMS-----------------PITHANKIKKPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 654 --------------------~~-~----~~~~~~~-----------------~~~~~~~~~~P~li~~G~~D~~vp~~~~ 691 (751)
.. . ....... .+..+.++++|+|+++|++|..+| ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~ 236 (279)
T d1hkha_ 159 FTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILP--ID 236 (279)
T ss_dssp HHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSC--TT
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccC--HH
Confidence 00 0 0000000 011234468999999999999987 54
Q ss_pred H-HHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 692 Q-AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 692 ~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
. .+.+.+.+ ..++++++++++|... .+..+++...+.+||.+
T Consensus 237 ~~~~~~~~~~----p~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 237 ATARRFHQAV----PEADYVEVEGAPHGLL-WTHADEVNAALKTFLAK 279 (279)
T ss_dssp TTHHHHHHHC----TTSEEEEETTCCTTHH-HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC----CCCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 3 34444333 3468999999999865 56778888999999863
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.9e-15 Score=145.88 Aligned_cols=192 Identities=11% Similarity=0.083 Sum_probs=119.1
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|.||++||.+. +...|. .+...| .++|.|++ ++.+|+|.+...... .+.| .++.
T Consensus 11 ~~~lvllHG~~~-----------~~~~~~----~~~~~L-~~~~~vi~---~D~~G~G~S~~~~~~---~~~d---~~~~ 65 (256)
T d1m33a_ 11 NVHLVLLHGWGL-----------NAEVWR----CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLAD---MAEA 65 (256)
T ss_dssp SSEEEEECCTTC-----------CGGGGG----GTHHHH-HTTSEEEE---ECCTTSTTCCSCCCC---CHHH---HHHH
T ss_pred CCeEEEECCCCC-----------CHHHHH----HHHHHH-hCCCEEEE---EeCCCCCCccccccc---cccc---cccc
Confidence 367889999641 111221 334444 47899999 566788876543221 1222 2233
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-c-Cccccc--------------------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-F-GFQTEF-------------------- 649 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~-~-~~~~~~-------------------- 649 (751)
+... ...++.++||||||.+++.+|.++|+.+++++++.+........ + ......
T Consensus 66 ~~~~---~~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T d1m33a_ 66 VLQQ---APDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFL 142 (256)
T ss_dssp HHTT---SCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHh
Confidence 3322 23689999999999999999999999999988876532211100 0 000000
Q ss_pred -----cc-ch-h----------------------hHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHH
Q 004475 650 -----RT-LW-E----------------------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 700 (751)
Q Consensus 650 -----~~-~~-~----------------------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l 700 (751)
.. .. . ....+...+....++++++|+|+++|++|..+| ...+..+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p--~~~~~~l~~~~ 220 (256)
T d1m33a_ 143 ALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW 220 (256)
T ss_dssp HTTSTTSTTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSC--GGGCC-CTTTC
T ss_pred hhhhccccchhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCC--HHHHHHHHHHC
Confidence 00 00 0 001112223334567789999999999999998 77665555433
Q ss_pred HhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 701 KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 701 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
..++++++++++|... .+..+++.+.+.+||++
T Consensus 221 ----~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 221 ----PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQR 253 (256)
T ss_dssp ----TTCEEEEETTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred ----CCCEEEEECCCCCchH-HHCHHHHHHHHHHHHHH
Confidence 3568999999999765 56788889999999874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.59 E-value=3.4e-13 Score=141.80 Aligned_cols=325 Identities=6% Similarity=-0.003 Sum_probs=174.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
....|.+++|.+.+.+|.. ...+.|.++|+++++...-..... .+..+++||||++|+..+.+
T Consensus 20 ~p~~~~~~~d~~~~~~V~~--------~~dg~v~vwD~~t~~~~~~l~~g~-----~~~~vafSPDGk~l~~~~~d---- 82 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTL--------RDAGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD---- 82 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCSEEEEEECCS-----SEEEEEECTTSCEEEEEETT----
T ss_pred CCCcccccCCCCeEEEEEE--------cCCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEeCC----
Confidence 4456889999999988865 455889999999988544332222 36788999999999876432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce---ecCC---C-ceEEeeeeC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGT---P-AVYTAVEPS 183 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~---~lt~---~-~~~~~~~~S 183 (751)
..+.++|+ +++.. ++.. + ....+++||
T Consensus 83 ---------------------------------------------~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s 117 (426)
T d1hzua2 83 ---------------------------------------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117 (426)
T ss_dssp ---------------------------------------------SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred ---------------------------------------------CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence 36778888 56432 2221 2 345688999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEec
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~ 263 (751)
|||++|++.... ...+.+||..++....+............+. .......+..++|++. +++..
T Consensus 118 pDG~~l~v~~~~------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~d~~~-~~~~~-- 181 (426)
T d1hzua2 118 YEDRYTIAGAYW------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYH-PEPRVAAIIASHEHPE-FIVNV-- 181 (426)
T ss_dssp CTTTEEEEEEEE------------SSEEEEEETTTCCEEEEEECCEECSSSCCEE-SCCCEEEEEECSSSSE-EEEEE--
T ss_pred CCCCEEEEeecC------------CCeEEEEcCCccceeEEeeccCCCccceeec-CCCceeEEEECCCCCE-EEEec--
Confidence 999999887544 3467889998776554433322111000000 0111224566777776 33322
Q ss_pred cCCCCccccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCC-----
Q 004475 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV----- 335 (751)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----- 335 (751)
...+.+..+... ......+ ........ +.++|+|++++..... ...+..++..++..
T Consensus 182 ---------~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 182 ---------KETGKVLLVNYK---DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN---SNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp ---------TTTTEEEEEECS---SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETT---CSEEEEEETTTTEEEEEEE
T ss_pred ---------CCCCeEEEEEec---cccceeeEEeccCCccEeeeECCCCcEEEeeeec---ccceeeeecccccEEEEec
Confidence 122345555443 1121111 22233344 8899999987665421 11222222222100
Q ss_pred -----------------------------cceeeeeccccc-----------ccC-CCCCCCeeeCCCCCEEEEeeeecC
Q 004475 336 -----------------------------APRVLFDRVFEN-----------VYS-DPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 336 -----------------------------~~~~l~~~~~~~-----------~~~-~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
....+....... ... ......+++||||++|+......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~- 325 (426)
T d1hzua2 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN- 325 (426)
T ss_dssp CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC-
T ss_pred cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC-
Confidence 000000000000 000 01122377899999887643100
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCcee-EEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEec-CCCCCe
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES-KTEITQ 452 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~~ 452 (751)
........|.+||+++++.. ++...... . .........-.++|||||++++++.+. ......
T Consensus 326 -------------~s~~~~~tv~vwd~~t~~~~~~~~~~~~~--~-~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~ 389 (426)
T d1hzua2 326 -------------PDARISQSVAVFDLKNLDAKYQVLPIAEW--A-DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA 389 (426)
T ss_dssp -------------SSHHHHTCEEEEETTCTTSCCEEECHHHH--H-CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCE
T ss_pred -------------CCcccCCEEEEEECCCCCcCeEEeccchh--c-ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCe
Confidence 00011236899999988753 33321110 0 000000001124799999999887654 345667
Q ss_pred EEEEEcCCCceeEe
Q 004475 453 YHILSWPLKKSSQI 466 (751)
Q Consensus 453 l~~~~~~~g~~~~l 466 (751)
|.++|..++++...
T Consensus 390 i~v~D~~T~k~~~~ 403 (426)
T d1hzua2 390 LVVVDDKTLKLKAV 403 (426)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCeEEEE
Confidence 99999999886643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.5e-13 Score=136.90 Aligned_cols=245 Identities=10% Similarity=-0.009 Sum_probs=152.1
Q ss_pred eeEEeecCCCCCCCCccc----ccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC
Q 004475 6 GIGIHRLLPDDSLGPEKE----VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~----l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~ 81 (751)
.|.+||+.. +..+. +........+...+|||||++|+... ....|.++++.....+......
T Consensus 73 ~V~iWd~~~----~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~ 138 (337)
T d1gxra_ 73 CVKVWDISH----PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG----------EASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp EEEEEETTS----TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE----------SSSEEEEEECCCC--EEEEEEE
T ss_pred EEEEEEccC----CcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee----------cccccccccccccccccccccc
Confidence 589999987 43322 22112223578899999999998753 2356777777654433221111
Q ss_pred CccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 82 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.+ ...+....|+||+..|+....+ ..+.+
T Consensus 139 ~~--~~~v~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~~ 167 (337)
T d1gxra_ 139 SS--APACYALAISPDSKVCFSCCSD-------------------------------------------------GNIAV 167 (337)
T ss_dssp CS--SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEE
T ss_pred cc--cccccccccccccccccccccc-------------------------------------------------ccccc
Confidence 11 1135677899999988876432 35677
Q ss_pred EcC-CCCceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccC
Q 004475 162 GSL-DGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (751)
Q Consensus 162 ~~~-~G~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (751)
+++ +++.... ..+ ..+..++|+++|+.+++...+ ..+.+||+.+++........
T Consensus 168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~---------- 224 (337)
T d1gxra_ 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT---------- 224 (337)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS----------
T ss_pred ccccccccccccccccccccccccccccccccccccc-------------ccccccccccceeecccccc----------
Confidence 777 5543332 323 667889999999999886543 35889999876543322211
Q ss_pred CccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee
Q 004475 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 239 ~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~ 317 (751)
..+..++|+|+++. ++... ..+.++++++. .............+. +.|+|||+.|+.++.
T Consensus 225 ---~~i~~l~~~~~~~~-l~~~~------------~d~~i~i~d~~---~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~ 285 (337)
T d1gxra_ 225 ---SQIFSLGYCPTGEW-LAVGM------------ESSNVEVLHVN---KPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp ---SCEEEEEECTTSSE-EEEEE------------TTSCEEEEETT---SSCEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ---cceEEEEEcccccc-cceec------------ccccccccccc---ccccccccccccccceEEECCCCCEEEEEeC
Confidence 23457899999998 55433 23578888875 333334444455677 999999998876552
Q ss_pred ecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 318 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...|.+.+..++ ........ ...+.. ++|||||++|+..+
T Consensus 286 ----Dg~i~iwd~~~~--~~~~~~~~-~~~v~~------~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 286 ----DNLLNAWRTPYG--ASIFQSKE-SSSVLS------CDISVDDKYIVTGS 325 (337)
T ss_dssp ----TSEEEEEETTTC--CEEEEEEC-SSCEEE------EEECTTSCEEEEEE
T ss_pred ----CCeEEEEECCCC--CEEEEccC-CCCEEE------EEEeCCCCEEEEEe
Confidence 245677777764 22222222 122222 77999999998876
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.57 E-value=4.6e-13 Score=134.13 Aligned_cols=222 Identities=11% Similarity=0.098 Sum_probs=136.8
Q ss_pred eeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~ 85 (751)
.|+++++.. +...++-. .....+...+|||||++||... ..+.|.++++.+++.........+
T Consensus 39 ~v~i~~~~~----~~~~~~~~-~H~~~v~~~~~sp~g~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~-- 101 (311)
T d1nr0a1 39 SVYTVPVGS----LTDTEIYT-EHSHQTTVAKTSPSGYYCASGD----------VHGNVRIWDTTQTTHILKTTIPVF-- 101 (311)
T ss_dssp EEEEEETTC----SSCCEEEC-CCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEESSSTTCCEEEEEECS--
T ss_pred EEEEEECCC----CceeEEEc-CCCCCEEEEEEeCCCCeEeccc----------cCceEeeeeeeccccccccccccc--
Confidence 589999987 76655431 2233689999999999998753 336778888877653221111111
Q ss_pred cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC
Q 004475 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (751)
Q Consensus 86 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (751)
...+..++|+|||+.|+..+..... ...||.++ +
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~~~~~---------------------------------------------~~~v~~~~-~ 135 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGEGRER---------------------------------------------FGHVFLFD-T 135 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSC---------------------------------------------SEEEEETT-T
T ss_pred cCccccccccccccccccccccccc---------------------------------------------cccccccc-c
Confidence 1147789999999999877532110 02344443 4
Q ss_pred C-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 166 G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
+ ....+..+ ..+..++|+|||++++++... ...+.+||..+.+...... .....
T Consensus 136 ~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~------------d~~i~i~d~~~~~~~~~~~------------~~~~~ 191 (311)
T d1nr0a1 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKSTFG------------EHTKF 191 (311)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEEEC------------CCSSC
T ss_pred ccccccccccccccccccccccceeeeccccc------------ccccccccccccccccccc------------ccccc
Confidence 4 34455555 678899999999986665433 2358899998765443321 11233
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-------EeeceeEE-EEEecCCceEEEe
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRFS-VSWCDDSLALVNE 315 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~spdg~~l~~~ 315 (751)
+..+.|+|||+. ++... ..+.+.+++... +.....+ ......+. ++|+|||++|+.+
T Consensus 192 i~~v~~~p~~~~-l~~~~------------~d~~v~~~d~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 192 VHSVRYNPDGSL-FASTG------------GDGTIVLYNGVD--GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp EEEEEECTTSSE-EEEEE------------TTSCEEEEETTT--CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred ccccccCccccc-ccccc------------cccccccccccc--ccccccccccccccccccccccccccCCCCCEEEEE
Confidence 568999999997 55543 224566666641 1111111 11234566 8999999988865
Q ss_pred eeecccceeEEEecCCCC
Q 004475 316 TWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~ 333 (751)
+. ...|.+.|..++
T Consensus 257 s~----Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 257 SA----DKTIKIWNVATL 270 (311)
T ss_dssp ET----TSEEEEEETTTT
T ss_pred eC----CCeEEEEECCCC
Confidence 42 235777777774
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.56 E-value=5.4e-14 Score=140.64 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=80.5
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
++-.+...||.+|....+-+++ .|.||++||.+..+ ..|. ....++++||.|++
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~--------g~pvvllHG~~~~~-----------~~w~-----~~~~~l~~~~~vi~-- 65 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGG-----------ISPH-----HRQLFDPERYKVLL-- 65 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCC-----------CCGG-----GGGGSCTTTEEEEE--
T ss_pred cCCEEEeCCCcEEEEEEecCCC--------CCeEEEECCCCCcc-----------cchH-----HHHHHhhcCCEEEE--
Confidence 3333555688899888886543 36788999965211 1121 11233567999999
Q ss_pred CCCCCCCCCCCCCch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 562 SIPIIGEGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 562 ~~~~~g~g~~~~~~~----~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
++.+|+|.+..... ......+|+...++.+ +..++.++|||+||.+++.++...|+++..+++.++.
T Consensus 66 -~D~rG~G~S~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~ 136 (313)
T d1wm1a_ 66 -FDQRGCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 136 (313)
T ss_dssp -ECCTTSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -EeCCCcccccccccccccchhhHHHHHHhhhhcc------CCCcceeEeeecCCchhhHHHHHHhhhheeeeecccc
Confidence 56667777643221 2333344444443332 3468999999999999999999999999999988765
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.56 E-value=5.7e-14 Score=139.40 Aligned_cols=213 Identities=15% Similarity=0.094 Sum_probs=126.0
Q ss_pred EEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcC
Q 004475 482 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 561 (751)
Q Consensus 482 e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 561 (751)
+..++. .+|.++..... + . .|+||++||.+. +...| ......| .++|.|++
T Consensus 9 ~~~~~~-~~~~~l~y~~~---G-----~--gp~vv~lHG~~~-----------~~~~~----~~~~~~l-~~~~~vi~-- 59 (293)
T d1ehya_ 9 KHYEVQ-LPDVKIHYVRE---G-----A--GPTLLLLHGWPG-----------FWWEW----SKVIGPL-AEHYDVIV-- 59 (293)
T ss_dssp CEEEEE-CSSCEEEEEEE---E-----C--SSEEEEECCSSC-----------CGGGG----HHHHHHH-HTTSEEEE--
T ss_pred cceEEE-ECCEEEEEEEE---C-----C--CCeEEEECCCCC-----------CHHHH----HHHHHHH-hcCCEEEE--
Confidence 344444 35667765443 1 1 478999999641 11111 1233344 56899999
Q ss_pred CCCCCCCCCCCCCc------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 562 SIPIIGEGDKLPND------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 562 ~~~~~g~g~~~~~~------~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.+.+|+|.+.... ....+..+|+.+.++.+ +..++.++||||||.+|+.++.++|+++.++|++++.
T Consensus 60 -~D~~G~G~s~~~~~~~~~~~~~~~~a~~~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 132 (293)
T d1ehya_ 60 -PDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 132 (293)
T ss_dssp -ECCTTSTTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred -ecCCcccCCccccccccccccchhhhhHHHhhhhhc------CccccccccccccccchhcccccCccccceeeeeecc
Confidence 5566777653221 12334445444444332 3468999999999999999999999999999998875
Q ss_pred CCCCCC-ccCcc-----------c---------cc----cc-------ch---------hhH-----------------H
Q 004475 636 YNKTLT-PFGFQ-----------T---------EF----RT-------LW---------EAT-----------------N 657 (751)
Q Consensus 636 ~d~~~~-~~~~~-----------~---------~~----~~-------~~---------~~~-----------------~ 657 (751)
...... ..... . .. .. .| ... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (293)
T d1ehya_ 133 QPDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFN 212 (293)
T ss_dssp CTTC-----------CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHH
T ss_pred CccccchhhhhhhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhh
Confidence 321000 00000 0 00 00 00 000 0
Q ss_pred HHHh-cCc------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHH
Q 004475 658 VYIE-MSP------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIW 730 (751)
Q Consensus 658 ~~~~-~~~------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 730 (751)
.+.. ... ......+++|+|+++|++|..+| .....+..+.+ ..++++++++++||... .+..+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~~--~~~~~~~~~~~---~~~~~~~~i~~~gH~~~-~e~Pe~~~~ 286 (293)
T d1ehya_ 213 YYRANIRPDAALWTDLDHTMSDLPVTMIWGLGDTCVP--YAPLIEFVPKY---YSNYTMETIEDCGHFLM-VEKPEIAID 286 (293)
T ss_dssp HHHHHSSSSCCCCCTGGGSCBCSCEEEEEECCSSCCT--THHHHHHHHHH---BSSEEEEEETTCCSCHH-HHCHHHHHH
T ss_pred hhhhccccchhhhhhhhhhccCCceEEEEeCCCCCcC--HHHHHHHHHHh---CCCCEEEEECCCCCchH-HHCHHHHHH
Confidence 0000 000 00123467999999999999988 77665555443 34689999999999765 566778888
Q ss_pred HHHHHH
Q 004475 731 ETDRWL 736 (751)
Q Consensus 731 ~~~~fl 736 (751)
.|.+||
T Consensus 287 ~I~~Ff 292 (293)
T d1ehya_ 287 RIKTAF 292 (293)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 888886
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.56 E-value=4.1e-12 Score=130.70 Aligned_cols=310 Identities=11% Similarity=0.012 Sum_probs=169.4
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.....++||||++++.... .......+||++|.++++...-..... ...++|||||++|++........
T Consensus 22 p~~~~a~spdg~~~~~~~~-----~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLP-----AHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred CccccccCCCCCEEEEEcc-----cccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCcc
Confidence 4678889999999977532 112455789999999988554322221 23679999999999885432211
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCcee-cCCC--------ceEEeee
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP--------AVYTAVE 181 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~-lt~~--------~~~~~~~ 181 (751)
.. ......|.++|+ +++... +..+ .....+.
T Consensus 91 ~~---------------------------------------~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (373)
T d2madh_ 91 AK---------------------------------------GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred cc---------------------------------------cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence 00 001146788888 664432 2211 1123578
Q ss_pred eCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
|+|||+.+++..... ...+.+++..+.+...... ....+.++|+|+. ++++.
T Consensus 132 ~s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~g~~-~~v~~ 183 (373)
T d2madh_ 132 NTPNNADLLFFQFAA-----------GPAVGLVVQGGSSDDQLLS----------------SPTCYHIHPGAPS-TFYLL 183 (373)
T ss_pred EEeCCCcEEEEEEcC-----------CCceEEeeccCCeEEEEec----------------cceeEEEecCCCc-EEEEE
Confidence 999999988865432 2345566666554332211 1236789999998 54433
Q ss_pred eccCCCCccccCcccceeeccCCCCCCCCceE-eEe-----e-ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK-----L-DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~-----~-~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
. ..+.+.+++.+ ...... ... . ..... ..+++++..++... ...++.++..+.
T Consensus 184 ~-----------~dg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~ 244 (373)
T d2madh_ 184 C-----------AQGGLAKTDHA---GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-----SGKILQADISAA 244 (373)
T ss_pred c-----------CCCeEEEEEcC---CceeeEEEeeeccccCccceeeeEEECCCceEEEecC-----CceEEEEEcCCC
Confidence 1 22466677664 222111 111 0 11112 45566665554322 234555555443
Q ss_pred CCcceeeeec--ccccc---cCCC-CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 334 DVAPRVLFDR--VFENV---YSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 334 ~~~~~~l~~~--~~~~~---~~~~-~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
....+... ..... ...+ .....++++||+.+++.... +..+... .....+++||..+++..
T Consensus 245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~-------~~~~~v~~~d~~t~~~~ 311 (373)
T d2madh_ 245 --GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE----QSAWKLH-------AAAKEVTSVTGLVGQTS 311 (373)
T ss_pred --eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC----CceEEee-------cCCCeEEEEECCCCcEE
Confidence 11111110 00000 0000 11126789999988776622 2222211 23347889999888765
Q ss_pred EEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 408 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
....... ....++|||||++++|...... ..|+++|+.+|+..+
T Consensus 312 ~~~~~~~------------~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 312 SQISLGH------------DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEecCCC------------CeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEE
Confidence 4433221 1223689999998877654433 569999999998654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1.9e-12 Score=132.14 Aligned_cols=314 Identities=12% Similarity=0.074 Sum_probs=171.2
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
.+.||||+++++... .......+||++|+++|+......... ...++|||||++|++........
T Consensus 7 ~a~spdg~~~~v~~~-----~~~~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~~~---- 71 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDP-----AHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSRI---- 71 (355)
T ss_dssp CCCCCCTTEEEEEEC-----GGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEET----
T ss_pred EeeCCCCCEEEEEec-----ccCCCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCCccc----
Confidence 467999999955421 111345789999999987544322221 23679999999998874311000
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCcee-cC--CC------ceEEeeeeCCC
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG--TP------AVYTAVEPSPD 185 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~-lt--~~------~~~~~~~~SpD 185 (751)
........|.++|+ +++... +. .. .....++||||
T Consensus 72 -----------------------------------~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 116 (355)
T d2bbkh_ 72 -----------------------------------ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116 (355)
T ss_dssp -----------------------------------TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred -----------------------------------cccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence 00002257888999 664322 21 10 12235789999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
|+++++..... ...+.+++..+++.......+..... ........+.+++||+. +++...
T Consensus 117 g~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dg~~-~~v~~~--- 176 (355)
T d2bbkh_ 117 GKTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHI-----FPTAPDTFFMHCRDGSL-AKVAFG--- 176 (355)
T ss_dssp SSEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEE-----EEEETTEEEEEETTSCE-EEEECC---
T ss_pred CCeeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceE-----eecCCcceEEEcCCCCE-EEEEec---
Confidence 99998865432 23577888887655433222211000 00112335789999997 444321
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee--e
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--D 342 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~--~ 342 (751)
....+.+.+....... ...... +.+++++..+++... ...+++++..++ ....+. .
T Consensus 177 --------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~--~~~~~~~~~ 235 (355)
T d2bbkh_ 177 --------TEGTPEITHTEVFHPE-------DEFLINHPAYSQKAGRLVWPTY----TGKIHQIDLSSG--DAKFLPAVE 235 (355)
T ss_dssp --------SSSCCEEEECCCCSCT-------TSCBCSCCEEETTTTEEEEEBT----TSEEEEEECTTS--SCEECCCEE
T ss_pred --------CCCeEEEEecccccce-------ecceeeeccccCCCCeEEEecC----CCeEEEEecCCC--cEEEEeccC
Confidence 1122333332210000 011112 467788887777652 346788887764 222221 1
Q ss_pred cccc---cc-cCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhh
Q 004475 343 RVFE---NV-YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 418 (751)
Q Consensus 343 ~~~~---~~-~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 418 (751)
.... .. +...+...+++++||+.+++..... ...........|++||..+++....+....
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~-----------~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~---- 300 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR-----------DEWRHKTASRFVVVLDAKTGERLAKFEMGH---- 300 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC-----------CTTCTTSCEEEEEEEETTTCCEEEEEEEEE----
T ss_pred CcccceEeeeeeccceEEEEEeCCCCeEEEEeccC-----------CceeecCCCCeEEEEeCCCCcEEEEecCCC----
Confidence 1100 00 0001122377899999888776431 001112234579999999887654433221
Q ss_pred hceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 419 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 419 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
....++|||||+.+++..... ...|+++|+.+|+..+
T Consensus 301 --------~~~~~a~spDG~~~l~v~~~~--d~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 301 --------EIDSINVSQDEKPLLYALSTG--DKTLYIHDAESGEELR 337 (355)
T ss_dssp --------EECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEE
T ss_pred --------CEEEEEEcCCCCeEEEEEECC--CCEEEEEECCCCCEEE
Confidence 122368999999877665433 3679999999998643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=8.3e-13 Score=133.45 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=148.2
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
-.|++|++.. .|..+.+..+..+..+...+|||||++|+.... .++...+|.++..++..+.+.....
T Consensus 14 ~~I~v~~~~~---~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~-------~d~~i~~~~i~~~~~~~~~~~~~~~-- 81 (333)
T d1ri6a_ 14 QQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR-------PEFRVLAYRIAPDDGALTFAAESAL-- 81 (333)
T ss_dssp TEEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEET-------TTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred CcEEEEEEcC---CCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC-------CCCeEEEEEEeCCCCcEEEeeeccc--
Confidence 4699999976 133343332333345789999999999965431 1233444544444444444322111
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
......++|||||++|+...... ..+..++.
T Consensus 82 -~~~p~~l~~spDg~~l~v~~~~~------------------------------------------------~~v~~~~~ 112 (333)
T d1ri6a_ 82 -PGSLTHISTDHQGQFVFVGSYNA------------------------------------------------GNVSVTRL 112 (333)
T ss_dssp -SSCCSEEEECTTSSEEEEEETTT------------------------------------------------TEEEEEEE
T ss_pred -CCCceEEEEcCCCCEEeecccCC------------------------------------------------Cceeeecc
Confidence 11235689999999998874321 23333333
Q ss_pred -CC---CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 165 -DG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 165 -~G---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
.+ ........ .....+.+||||++++..... ...+.+++............... ...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~------~~~ 174 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEV------TTV 174 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEE------ECS
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccc------------cceeeEEEeccCCcceeeeceee------eee
Confidence 22 11122222 456678999999998887544 23466666653321111000000 001
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE---eE------eeceeEE-EEEecCC
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH------KLDLRFS-VSWCDDS 309 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l~------~~~~~~~-~~~spdg 309 (751)
....++.+.|++++.. ++...... ....++.+... ...... +. ....... ..+++|+
T Consensus 175 ~g~~p~~i~~~~~~~~-~~~~~~~~---------~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 175 EGAGPRHMVFHPNEQY-AYCVNELN---------SSVDVWELKDP---HGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp TTCCEEEEEECTTSSE-EEEEETTT---------TEEEEEESSCT---TSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cCCCccEEEEecccee-EEeecccc---------CceEEEeeccc---ccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 1123467899999997 55433111 11123332221 111111 10 0112233 7899999
Q ss_pred ceEEEeeeecccceeEEEecCCCCCCcceeeeeccc-ccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
+.++.... ......+|.++.++. ..+....... .... .++|||||++|+....+
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~------~~a~spDGk~l~va~~~---------------- 296 (333)
T d1ri6a_ 242 RHLYACDR-TASLITVFSVSEDGS--VLSKEGFQPTETQPR------GFNVDHSGKYLIAAGQK---------------- 296 (333)
T ss_dssp SEEEEEET-TTTEEEEEEECTTSC--CEEEEEEEECSSSCC------CEEECTTSSEEEEECTT----------------
T ss_pred Cceeeecc-cCCeEEEEEEcCCCC--EEEEEEEeCCCCCee------EEEEeCCCCEEEEEECC----------------
Confidence 98765542 233456777776653 2122211111 1111 18899999998766521
Q ss_pred CCCCCceeEEEecCCCceeEE
Q 004475 389 PEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l 409 (751)
.....||.+|.++|+++++
T Consensus 297 --~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 297 --SHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp --TCEEEEEEEETTTTEEEEE
T ss_pred --CCeEEEEEEECCCCcEEEE
Confidence 2234567778888887665
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=1.8e-13 Score=133.29 Aligned_cols=217 Identities=10% Similarity=0.055 Sum_probs=133.3
Q ss_pred ceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEE
Q 004475 480 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 558 (751)
Q Consensus 480 ~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 558 (751)
++|++++++. .+..++..++.|. .|+|+++||.+.+ +....|.... .....++.++++|+
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~---------~pvlylLhG~~g~---------~~~~~w~~~~-~~~~~~~~~~~iVV 63 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG---------PHAVYLLDAFNAG---------PDVSNWVTAG-NAMNTLAGKGISVV 63 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS---------SSEEEEECCSSCC---------SSSCHHHHTS-CHHHHHTTSSSEEE
T ss_pred ceEEEEEecccCCceeeEEEECCC---------CCEEEEcCCCCCC---------CCcchhhhcc-HHHHHHhhCCeEEE
Confidence 4677888764 4557888887543 4899999994210 0001121111 23445667899999
Q ss_pred EcCCCCCCCC-CCC--CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 559 AGPSIPIIGE-GDK--LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 559 ~~~~~~~~g~-g~~--~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
+++. +..++ ... .....+...+.+ +++.+|.++..+|+++++|.|+||||++|+.+++++|++|+++++++|.
T Consensus 64 ~p~g-~~~~~y~~~~~~~~~~~~tfl~~---eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~ 139 (267)
T d1r88a_ 64 APAG-GAYSMYTNWEQDGSKQWDTFLSA---ELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGF 139 (267)
T ss_dssp EECC-CTTSTTSBCSSCTTCBHHHHHHT---HHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred EECC-CCCcCCccccccccccHHHHHHH---HHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCc
Confidence 9654 11111 111 112234444444 4566777777789999999999999999999999999999999999998
Q ss_pred CCCCCCccCc----------ccccccch--hhHHHHHhcCcccccCC---CCCCEEEEEcCCCCCCCC---------ChH
Q 004475 636 YNKTLTPFGF----------QTEFRTLW--EATNVYIEMSPITHANK---IKKPILIIHGEVDDKVGL---------FPM 691 (751)
Q Consensus 636 ~d~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~P~li~~G~~D~~vp~---------~~~ 691 (751)
++........ .......| .....+.+++|..++++ ...++++.+|..|..+.. ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~ 219 (267)
T d1r88a_ 140 LYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMG 219 (267)
T ss_dssp CCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHH
T ss_pred cCCCCccchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhh
Confidence 7643211000 00000011 11122344555544433 347799999999876530 013
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeCCCCCcC
Q 004475 692 QAERFFDALKGH-GALSRLVLLPFEHHVY 719 (751)
Q Consensus 692 ~~~~~~~~l~~~-~~~~~~~~~~~~~H~~ 719 (751)
...++.++|.+. +.++++...++++|.+
T Consensus 220 ~~~~~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 220 NSRMFYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred hHHHHHHHHHHcCCCcEEEEEcCCCeECh
Confidence 455677777765 4678888888899975
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=1.9e-13 Score=143.89 Aligned_cols=85 Identities=15% Similarity=-0.010 Sum_probs=56.6
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-c
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-I 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~-~ 83 (751)
..|.+||+.+ ++..... +.+......+|||||++|+..+ ....|.++++++++...+..... .
T Consensus 42 g~v~vwD~~t----~~~~~~l--~~g~~~~~vafSPDGk~l~~~~----------~d~~v~vwd~~t~~~~~~~~i~~~~ 105 (426)
T d1hzua2 42 GQIALVDGDS----KKIVKVI--DTGYAVHISRMSASGRYLLVIG----------RDARIDMIDLWAKEPTKVAEIKIGI 105 (426)
T ss_dssp TEEEEEETTT----CSEEEEE--ECCSSEEEEEECTTSCEEEEEE----------TTSEEEEEETTSSSCEEEEEEECCS
T ss_pred CEEEEEECCC----CcEEEEE--eCCCCeeEEEECCCCCEEEEEe----------CCCCEEEEEccCCceeEEEEEeCCC
Confidence 4789999988 8876533 3444578899999999986542 22578889998887543321111 0
Q ss_pred cccceeeeeEEecCCcEEEEee
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~ 105 (751)
.....+.+++|||||++|+...
T Consensus 106 ~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 106 EARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE
T ss_pred CCcceEEeeeecCCCCEEEEee
Confidence 1111234678899999988764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.50 E-value=5.6e-12 Score=125.22 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=142.9
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||..+ ....|.++++++++..+...... ...+..++|+|||+.++....
T Consensus 14 ~V~~l~~s~dg~~l~s~s----------~Dg~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~~d----- 75 (299)
T d1nr0a2 14 AITALSSSADGKTLFSAD----------AEGHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVSWD----- 75 (299)
T ss_dssp CEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEETT-----
T ss_pred CcEEEEECCCCCEEEEEc----------CCCeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeecccce-----
Confidence 588899999999998753 33567888998888665543221 113678999999986554421
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-Cc---eecCC--CceEEeeeeCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA---KDFGT--PAVYTAVEPSPD 185 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~---~~lt~--~~~~~~~~~SpD 185 (751)
..+.+++..+ .. ..+.. ...+..+.|+||
T Consensus 76 ---------------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 110 (299)
T d1nr0a2 76 ---------------------------------------------DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110 (299)
T ss_dssp ---------------------------------------------TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred ---------------------------------------------eeEEEeccCCccccccccccccccccccccccccc
Confidence 3556666633 11 11111 145667899999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
|+.++..... .+.+|+..... +... ......++|+||++. ++...
T Consensus 111 g~~~~~~~~~--------------~i~~~~~~~~~-~~~~---------------~~~~~~~~~s~~~~~-l~~g~---- 155 (299)
T d1nr0a2 111 GDIAVAACYK--------------HIAIYSHGKLT-EVPI---------------SYNSSCVALSNDKQF-VAVGG---- 155 (299)
T ss_dssp SSCEEEEESS--------------EEEEEETTEEE-EEEC---------------SSCEEEEEECTTSCE-EEEEE----
T ss_pred cccccccccc--------------ccccccccccc-cccc---------------ccccccccccccccc-ccccc----
Confidence 9987765332 46677643221 1110 012346899999997 55533
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEe--EeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeee
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 342 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 342 (751)
..+.|.+++++ +.....+ ......+. +.|+|+++.|+.... ...|++.+..++ .....+..
T Consensus 156 --------~dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~-~~~~~~~~ 219 (299)
T d1nr0a2 156 --------QDSKVHVYKLS---GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANN-FELAHTNS 219 (299)
T ss_dssp --------TTSEEEEEEEE---TTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGT-TEESCCCC
T ss_pred --------ccccccccccc---ccccccccccccccccccccccccccccccccc----cccccccccccc-cccccccc
Confidence 23578888875 3333222 23355667 999999999877552 235666666553 11111111
Q ss_pred --cccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 343 --RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 343 --~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
.....+.. ++|+|||++|+..+.+ ..|++||+.+++...+
T Consensus 220 ~~~h~~~v~~------l~~s~~~~~l~sgs~d---------------------g~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 220 WTFHTAKVAC------VSWSPDNVRLATGSLD---------------------NSVIVWNMNKPSDHPI 261 (299)
T ss_dssp CCCCSSCEEE------EEECTTSSEEEEEETT---------------------SCEEEEETTCTTSCCE
T ss_pred cccccccccc------ccccccccceEEEcCC---------------------CEEEEEECCCCCcceE
Confidence 11111222 7899999999887732 2688999987765443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.49 E-value=1.8e-12 Score=133.53 Aligned_cols=232 Identities=14% Similarity=0.076 Sum_probs=131.0
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||+.||+.. ....|.++++++++..++.....+ ...+..++|||||++|+..+.+
T Consensus 9 pIt~~~~s~dg~~la~~~----------~~~~i~iw~~~~~~~~~~~~l~gH--~~~V~~l~fsp~~~~l~s~s~D---- 72 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICP----------NNHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNRIVTCGTD---- 72 (371)
T ss_dssp CCCEEEECTTSSEEEEEC----------SSSEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETTTTEEEEEETT----
T ss_pred CeEEEEECCCCCEEEEEe----------CCCEEEEEECCCCCEEEEEEecCC--CCCEEEEEECCCCCEEEEEECC----
Confidence 478899999999999853 335788888878765544321211 1147899999999998876432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecCCC-ceEEeeeeCCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVEPSPDQ 186 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt~~-~~~~~~~~SpDG 186 (751)
..|.++++ +++. ..+..+ ..+..+.|+|||
T Consensus 73 ---------------------------------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 107 (371)
T d1k8kc_ 73 ---------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 107 (371)
T ss_dssp ---------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS
T ss_pred ---------------------------------------------CeEEEEeeccccccccccccccccccccccccccc
Confidence 35666666 4422 222333 678899999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
++|+..+.++ .+.+|+.+........... .......+..++|+|||+. |+..+ .+
T Consensus 108 ~~l~~~s~d~-------------~i~i~~~~~~~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~-l~s~s-~D-- 162 (371)
T d1k8kc_ 108 KKFAVGSGSR-------------VISICYFEQENDWWVCKHI--------KKPIRSTVLSLDWHPNSVL-LAAGS-CD-- 162 (371)
T ss_dssp SEEEEEETTS-------------SEEEEEEETTTTEEEEEEE--------CTTCCSCEEEEEECTTSSE-EEEEE-TT--
T ss_pred ccceeecccC-------------cceeeeeeccccccccccc--------ccccccccccccccccccc-eeccc-cC--
Confidence 9998875442 3445544332211110000 0111223567899999997 55433 11
Q ss_pred CCccccCcccceeeccCCCCC-------------CCCceEeE---eeceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 267 DANVEVSPRDIIYTQPAEPAE-------------GEKPEILH---KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~l~---~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
+.+.+++..... ......+. .....+. ++|+|||+.|+..+. ...|.+.|
T Consensus 163 ---------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~----d~~i~iwd 229 (371)
T d1k8kc_ 163 ---------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLAD 229 (371)
T ss_dssp ---------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEE
T ss_pred ---------cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc----CCcceEEe
Confidence 233333321000 00011122 2334456 899999999887652 23566667
Q ss_pred CCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 330 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...+ ............+.. ++|+|||+.|+...
T Consensus 230 ~~~~--~~~~~~~~~~~~v~s------~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 230 ADKK--MAVATLASETLPLLA------VTFITESSLVAAGH 262 (371)
T ss_dssp GGGT--TEEEEEECSSCCEEE------EEEEETTEEEEEET
T ss_pred eecc--cceeeeeccccccee------eeecCCCCEEEEEc
Confidence 6664 222222222222222 78999998776533
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.49 E-value=9.4e-13 Score=129.16 Aligned_cols=210 Identities=14% Similarity=0.086 Sum_probs=122.9
Q ss_pred ceEEEEEEcCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH----hCCe
Q 004475 480 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL----ARRF 555 (751)
Q Consensus 480 ~~e~i~~~~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~ 555 (751)
..++++++..++ +..+.+|+|+++++++ ++|+|+++||++....+. .............+. ...+
T Consensus 26 ~v~~~~~~~~~~-~r~~~vylP~~y~~~k--~yPvl~~lhG~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 94 (273)
T d1wb4a1 26 RIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI--------FSNDVKLQNILDHAIMNGELEPL 94 (273)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCCTTST--------TSTTTCHHHHHHHHHHHTSSCCE
T ss_pred eEEEEEEecCCC-eEEEEEEeCCCCCCCC--CceEEEEEeCCCCCcchh--------hhhccchhHHHHhhhhhhccCCc
Confidence 578888887666 5799999999987654 599999999986321110 001110111111222 2467
Q ss_pred EEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH---------HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCce
Q 004475 556 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE---------VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 626 (751)
Q Consensus 556 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~---------l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~ 626 (751)
.|+.++..+..+.+. .+.....++....++. +..+..+|+++++++|+|+||++|+.+|.++|++|
T Consensus 95 ~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f 169 (273)
T d1wb4a1 95 IVVTPTFNGGNCTAQ-----NFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYV 169 (273)
T ss_dssp EEEECCSCSTTCCTT-----THHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTC
T ss_pred eeeccccCCCCCccc-----cchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcc
Confidence 888755533333222 2222223322222221 12223368899999999999999999999999999
Q ss_pred eEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHH-----
Q 004475 627 CCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK----- 701 (751)
Q Consensus 627 ~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~----- 701 (751)
+++++++|.+........ .......... .........++++.+|+.|.. ........+.+.
T Consensus 170 ~a~~~~sg~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~ 235 (273)
T d1wb4a1 170 AYFMPLSGDYWYGNSPQD------KANSIAEAIN----RSGLSKREYFVFAATGSEDIA----YANMNPQIEAMKALPHF 235 (273)
T ss_dssp CEEEEESCCCCBSSSHHH------HHHHHHHHHH----HHTCCTTSCEEEEEEETTCTT----HHHHHHHHHHHHTSTTC
T ss_pred eEEEEeCcccccCCCccc------ccccchhhhh----hhhhcccceEEEEecCCCCcc----cccchhHHHHHHHHHHH
Confidence 999999997643221100 0000000000 112233345678888888765 344444444443
Q ss_pred -----hCCCcEEEEEeCCCCCcC
Q 004475 702 -----GHGALSRLVLLPFEHHVY 719 (751)
Q Consensus 702 -----~~~~~~~~~~~~~~~H~~ 719 (751)
..+..+.+.++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 236 DYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp CBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHhcCCCEEEEEECCCccCH
Confidence 234578899999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=6e-12 Score=131.92 Aligned_cols=206 Identities=7% Similarity=-0.057 Sum_probs=124.5
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
..+....|.+.+.++.. ...+.|.++|+++++...-..... .+..++|||||++|+..+.+
T Consensus 22 ~~~~~~~~~~~~~~v~~--------~d~g~v~v~D~~t~~v~~~~~~g~-----~~~~v~fSpDG~~l~~~s~d------ 82 (432)
T d1qksa2 22 TQQMNDWDLENLFSVTL--------RDAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGRD------ 82 (432)
T ss_dssp SSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEETT------
T ss_pred CceeecCCCCcEEEEEE--------cCCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEcCC------
Confidence 34566777777877664 455789999999998655433222 36788999999999876432
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc---eecC---CC-ceEEeeeeCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFG---TP-AVYTAVEPSPD 185 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~---~~lt---~~-~~~~~~~~SpD 185 (751)
..+.++|+ +++. .++. .+ .....+.||||
T Consensus 83 -------------------------------------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 83 -------------------------------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119 (432)
T ss_dssp -------------------------------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred -------------------------------------------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence 36777887 5532 2222 12 44557789999
Q ss_pred CceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
|++|+++... ...+.+||.++++................+ ........+.+||||+. ++++.
T Consensus 120 G~~l~vs~~~------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~-~~vs~---- 181 (432)
T d1qksa2 120 DKYAIAGAYW------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEY-HPEPRVAAILASHYRPE-FIVNV---- 181 (432)
T ss_dssp TTEEEEEEEE------------TTEEEEEETTTCCEEEEEECCEECTTTCCE-ESCCCEEEEEECSSSSE-EEEEE----
T ss_pred CCEEEEEcCC------------CCeEEEEeCccccceeeeccCCccccceec-cCCCceeEEEECCCCCE-EEEEE----
Confidence 9999886554 346889999987765543332111100000 00111235678888887 44432
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
...+.+.+++.. ......+. ....... +.++|||++++.+... ...+..++.++
T Consensus 182 -------~~~~~i~~~d~~---~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d~~~ 238 (432)
T d1qksa2 182 -------KETGKILLVDYT---DLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKE 238 (432)
T ss_dssp -------TTTTEEEEEETT---CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTT
T ss_pred -------ccCCeEEEEEcc---CCCcceEEEEcccCccccceECCCCCEEEEeccc---cceEEEeeccc
Confidence 134578888775 22222222 1222344 8999999988776632 23455556555
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=5.3e-12 Score=127.41 Aligned_cols=292 Identities=12% Similarity=-0.005 Sum_probs=159.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCC-cccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
.-+|+++|+.+ ++......++. +......+|||||++|+.+. .....|+++|+++++...-.....
T Consensus 10 d~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---------~~~~~v~v~D~~t~~~~~~~~~~~ 76 (337)
T d1pbyb_ 10 PDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATV---------NKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---------TTTTEEEEEETTTCCEEEEEECCB
T ss_pred CCEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEEEecCC
Confidence 45899999988 87665432333 33567899999999886643 344789999999988654322221
Q ss_pred cc-ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 83 IC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 83 ~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
.. .......++|||||++++........... ........+.+
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 119 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELT-------------------------------------HFEVQPTRVAL 119 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSS-------------------------------------CEEECCCEEEE
T ss_pred CcccccceeeEEEcCCCcEEEEeecCCcceee-------------------------------------eccccccceee
Confidence 11 01123478999999999877432111100 00001146677
Q ss_pred EcC-CCCc-eecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 162 GSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 162 ~~~-~G~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
++. +++. +.+........++|||||++++... .+..+||..+++..........
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~~~~~d~~~~~~~~~~~~~~~--------- 175 (337)
T d1pbyb_ 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQSW--------- 175 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTTT---------
T ss_pred ccccCCeEEEeccccCCceEEEEcCCCCEEEEEc---------------CCcceeeeecCcEEEEeecCCc---------
Confidence 777 5533 3333335566789999999998763 2356788876654332211110
Q ss_pred ccCCCceeeeecCCCce---------EEE--EEeccCCCCccccCcccceeeccCCCCCCCCceE--eEeeceeEE-EEE
Q 004475 240 VREGMRSISWRADKPST---------LYW--VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKLDLRFS-VSW 305 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~---------i~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~-~~~ 305 (751)
.....++|++..+ ... ..................+++++.. .+.... ......... ..+
T Consensus 176 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 176 ----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp ----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT---TCCEEEEEEEECSSCEEEEEE
T ss_pred ----cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC---CCcEEEEEecCCCcceEEEEe
Confidence 0111233333220 111 1100001111111122356666664 222222 222233344 788
Q ss_pred ecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccC
Q 004475 306 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 385 (751)
Q Consensus 306 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~ 385 (751)
+|+++.++... ..|.++|+.++ ......... ..... ++|||||++|+....
T Consensus 249 ~~~~~~~~~~~------~~i~v~d~~~~--~~~~~~~~~-~~~~~------~~~s~dG~~l~v~~~-------------- 299 (337)
T d1pbyb_ 249 NPAKTRAFGAY------NVLESFDLEKN--ASIKRVPLP-HSYYS------VNVSTDGSTVWLGGA-------------- 299 (337)
T ss_dssp CTTSSEEEEEE------SEEEEEETTTT--EEEEEEECS-SCCCE------EEECTTSCEEEEESB--------------
T ss_pred cccceEEEEcc------ccEEEEECCCC--cEEEEEcCC-CCEEE------EEECCCCCEEEEEeC--------------
Confidence 89999775432 46778888875 222222211 11111 889999999987652
Q ss_pred CCCCCCCCceeEEEecCCCceeEEeec
Q 004475 386 GFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 386 ~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
...|.+||+++++.......
T Consensus 300 -------~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 300 -------LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -------SSEEEEEETTTCCEEEEEEC
T ss_pred -------CCcEEEEECCCCcEEEEEEC
Confidence 23689999999877544443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.9e-12 Score=126.52 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=112.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.....++|||||++|++.... ...+..++.+........... .....+..+.++|||+
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~------------~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYN------------AGNVSVTRLEDGLPVGVVDVV----------EGLDGCHSANISPDNR 140 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETT------------TTEEEEEEEETTEEEEEEEEE----------CCCTTBCCCEECTTSS
T ss_pred CCceEEEEcCCCCEEeecccC------------CCceeeeccccccceeccccc----------CCCccceEEEeeecce
Confidence 345578999999999887543 224555555443332221111 1112345779999999
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe----Eee-ceeEE-EEEecCCceEEEeeeecccceeEEEe
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL----HKL-DLRFS-VSWCDDSLALVNETWYKTSQTRTWLV 328 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l----~~~-~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~ 328 (751)
+ ++.... ....+.+++.... ....... ... ..... +.|++++..++.... ......++.+
T Consensus 141 ~-~~~~~~-----------~~~~i~~~~~~~~-~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~-~~~~~~v~~~ 206 (333)
T d1ri6a_ 141 T-LWVPAL-----------KQDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE-LNSSVDVWEL 206 (333)
T ss_dssp E-EEEEEG-----------GGTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET-TTTEEEEEES
T ss_pred e-eecccc-----------ccceeeEEEeccC-CcceeeeceeeeeecCCCccEEEEeccceeEEeecc-ccCceEEEee
Confidence 8 555431 1234555555311 1111111 111 11223 789999998765542 2233456665
Q ss_pred cCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeE
Q 004475 329 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 408 (751)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 408 (751)
+...........................+++++||++++..... .....++.++..++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 268 (333)
T d1ri6a_ 207 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------------------ASLITVFSVSEDGSVLSK 268 (333)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------------------TTEEEEEEECTTSCCEEE
T ss_pred cccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc------------------CCeEEEEEEcCCCCEEEE
Confidence 55442111111110000000000111126789999988776621 111233333333332222
Q ss_pred EeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEeecCC
Q 004475 409 IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 470 (751)
Q Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~lt~~~ 470 (751)
...... ...+..++|||||++|+... .....-.+|.+|..+|+.+++...+
T Consensus 269 ~~~~~~----------~~~p~~~a~spDGk~l~va~-~~~~~v~v~~id~~tG~l~~~~~~~ 319 (333)
T d1ri6a_ 269 EGFQPT----------ETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRYA 319 (333)
T ss_dssp EEEEEC----------SSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEeCC----------CCCeeEEEEeCCCCEEEEEE-CCCCeEEEEEEECCCCcEEEEEecc
Confidence 211110 11233478999999877553 3232335778898889887765543
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.47 E-value=6.6e-14 Score=136.03 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=112.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 591 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~ 591 (751)
.|+||++||.+. +...| ..+...|++.||.|++ ++.+|+|.+........... ..+...
T Consensus 16 ~P~ivllHG~~~-----------~~~~~----~~~~~~L~~~g~~vi~---~Dl~G~G~s~~~~~~~~~~~---~~~~~~ 74 (264)
T d1r3da_ 16 TPLVVLVHGLLG-----------SGADW----QPVLSHLARTQCAALT---LDLPGHGTNPERHCDNFAEA---VEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTC-----------CGGGG----HHHHHHHTTSSCEEEE---ECCTTCSSCC-------CHH---HHHHHH
T ss_pred CCeEEEeCCCCC-----------CHHHH----HHHHHHHHhCCCEEEE---Eecccccccccccccccchh---hhhhhh
Confidence 689999999641 11112 2445577788999999 66678887644332211111 112222
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccc----------------c-------
Q 004475 592 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT----------------E------- 648 (751)
Q Consensus 592 l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~----------------~------- 648 (751)
+.........++.++||||||.+|+.++.++|+.+..++...+............. .
T Consensus 75 ~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T d1r3da_ 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLS 154 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cccccccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 22222334578999999999999999999999887776655432211100000000 0
Q ss_pred ---cccch-----hh---------------H-HHHHhc------CcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHH
Q 004475 649 ---FRTLW-----EA---------------T-NVYIEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 698 (751)
Q Consensus 649 ---~~~~~-----~~---------------~-~~~~~~------~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~ 698 (751)
....+ .. . ...... .....+..+++|+++++|++|..++ .+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~~-------~~~~ 227 (264)
T d1r3da_ 155 DWYQQAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-------QLAE 227 (264)
T ss_dssp HHTTSGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-------HHHH
T ss_pred hhhhhhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHHH-------HHHh
Confidence 00000 00 0 000000 1122345788999999999996532 1222
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHHh
Q 004475 699 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 740 (751)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 740 (751)
. ..+++++++++||... .+..+++.+.+.+||+..+
T Consensus 228 ~-----~~~~~~~i~~~gH~~~-~e~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 228 S-----SGLSYSQVAQAGHNVH-HEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp H-----HCSEEEEETTCCSCHH-HHCHHHHHHHHHHHHHHHC
T ss_pred c-----CCCeEEEECCCCCchH-HHCHHHHHHHHHHHHHhcc
Confidence 1 2458999999999876 5678889999999998753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=7.3e-13 Score=139.04 Aligned_cols=169 Identities=11% Similarity=-0.052 Sum_probs=104.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-c
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-I 83 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~-~ 83 (751)
..|.++|+.+ ++..... +.+......+|||||++||..+ ....+.++++++++.+.+...+. .
T Consensus 42 g~v~v~D~~t----~~v~~~~--~~g~~~~~v~fSpDG~~l~~~s----------~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 42 GQIALIDGST----YEIKTVL--DTGYAVHISRLSASGRYLFVIG----------RDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp TEEEEEETTT----CCEEEEE--ECSSCEEEEEECTTSCEEEEEE----------TTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CEEEEEECCC----CcEEEEE--eCCCCeeEEEECCCCCEEEEEc----------CCCCEEEEEeeCCCceEEEEEecCC
Confidence 4788999998 8887654 3444578899999999997653 22578888988876543321111 0
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....+..+.|||||++|+.+... ...+.++|
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~~------------------------------------------------~~~v~i~d 137 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAYW------------------------------------------------PPQYVIMD 137 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEE------------------------------------------------TTEEEEEE
T ss_pred CCCCeEEecccCCCCCEEEEEcCC------------------------------------------------CCeEEEEe
Confidence 001123456788999998776331 13567777
Q ss_pred C-CCCceecC-------------CCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC
Q 004475 164 L-DGTAKDFG-------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (751)
Q Consensus 164 ~-~G~~~~lt-------------~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (751)
. +++..... .......+.+||||+.++++... ...+++++..+.+...+...+.
T Consensus 138 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~------------~~~i~~~d~~~~~~~~~~~i~~ 205 (432)
T d1qksa2 138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLKTTEISA 205 (432)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEEEEEEEC
T ss_pred CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc------------CCeEEEEEccCCCcceEEEEcc
Confidence 7 55433221 11334567889999988876543 3467888887654333322111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
...+..+.|+|||++ ++.++
T Consensus 206 -----------g~~~~~~~~spdg~~-~~va~ 225 (432)
T d1qksa2 206 -----------ERFLHDGGLDGSHRY-FITAA 225 (432)
T ss_dssp -----------CSSEEEEEECTTSCE-EEEEE
T ss_pred -----------cCccccceECCCCCE-EEEec
Confidence 122457899999998 55543
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.4e-12 Score=128.06 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=138.6
Q ss_pred CceEEEEEEcC-CCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEE
Q 004475 479 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 557 (751)
Q Consensus 479 ~~~e~i~~~~~-~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 557 (751)
.+++.+++++. -+..|...+. .+ ++|+|+++||.+.. .....|... ......++++|++|
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~--~~-------~~p~lyllhG~~g~---------~d~~~W~~~-~~~~~~~~~~~~iv 64 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ--GG-------GPHAVYLLDGLRAQ---------DDYNGWDIN-TPAFEEYYQSGLSV 64 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE--CC-------SSSEEEECCCTTCC---------SSSCHHHHH-SCHHHHHTTSSSEE
T ss_pred cEEEEEEEecccCCCcceEEee--CC-------CCCEEEECCCCCCC---------Cccchhhhc-chHHHHHHhCCcEE
Confidence 56777777764 3456666653 21 37999999995310 000111110 12334667899999
Q ss_pred EEcCCCCCCCCCC---------CCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004475 558 LAGPSIPIIGEGD---------KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 628 (751)
Q Consensus 558 ~~~~~~~~~g~g~---------~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 628 (751)
++++......+.. ......+...+++ +++.+|.++..+|+++++++|+||||++|+.+|+++|++|++
T Consensus 65 V~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~a 141 (280)
T d1dqza_ 65 IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTR---EMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPY 141 (280)
T ss_dssp EEECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHT---HHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSE
T ss_pred EEECCCCCCcCccccCCcccccCCcchhHHHHHHH---HHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeE
Confidence 9966421111100 0112233444444 556666666668999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCccCcc----------cccccch--hhHHHHHhcCcccccCCC---CCCEEEEEcCCCCCCCCC----
Q 004475 629 GIARSGSYNKTLTPFGFQ----------TEFRTLW--EATNVYIEMSPITHANKI---KKPILIIHGEVDDKVGLF---- 689 (751)
Q Consensus 629 ~v~~~~~~d~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~---~~P~li~~G~~D~~vp~~---- 689 (751)
+++++|.++......... ......+ .....+..+++...++++ .+++++.+|..|...+..
T Consensus 142 v~s~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 221 (280)
T d1dqza_ 142 AASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIP 221 (280)
T ss_dssp EEEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHH
T ss_pred EEEecCccCcccCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccc
Confidence 999999876432211000 0000001 011234555666555443 478999999988654300
Q ss_pred --------hHHHHHHHHHHHhCCCcEEEE-EeCCCCCcCCccc-cHHHHHHHHHHHHH
Q 004475 690 --------PMQAERFFDALKGHGALSRLV-LLPFEHHVYAARE-NVMHVIWETDRWLQ 737 (751)
Q Consensus 690 --------~~~~~~~~~~l~~~~~~~~~~-~~~~~~H~~~~~~-~~~~~~~~~~~fl~ 737 (751)
......+.++|..++...... ..++++|.+.... ........+++||+
T Consensus 222 ~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W~~W~~~L~~~~p~~~~~l~ 279 (280)
T d1dqza_ 222 AKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCchHHHHHHHHHhHHHHHHhc
Confidence 244667888888887654444 4456789853221 12233456666664
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=9.1e-12 Score=126.98 Aligned_cols=278 Identities=12% Similarity=-0.006 Sum_probs=153.3
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD- 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~- 82 (751)
...||++|+.+ |+..... +.+ ....++|||||++|+++...............|+++|+.+++.........
T Consensus 27 ~~~v~v~D~~t----g~~~~~~--~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~ 99 (355)
T d2bbkh_ 27 VTQQFVIDGEA----GRVIGMI--DGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 99 (355)
T ss_dssp SEEEEEEETTT----TEEEEEE--EEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred cCeEEEEECCC----CcEEEEE--ECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc
Confidence 34699999988 8765533 333 345789999999999876422111111334689999999988654322111
Q ss_pred --ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 83 --ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 83 --~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.........++|||||+++++...... ..+.
T Consensus 100 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-----------------------------------------------~~~~ 132 (355)
T d2bbkh_ 100 PRFLVGTYPWMTSLTPDGKTLLFYQFSPA-----------------------------------------------PAVG 132 (355)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSSS-----------------------------------------------CEEE
T ss_pred ceeecCCCCceEEEecCCCeeEEecCCCC-----------------------------------------------ceee
Confidence 111111246799999999988743211 2455
Q ss_pred EEcC-CCCc-eecCCC--------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCC
Q 004475 161 LGSL-DGTA-KDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (751)
Q Consensus 161 ~~~~-~G~~-~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (751)
+++. +++. +.+..+ .....+.+++||+.+++..... ..+.+.+..+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~------------~~~~~~~~~~~~~~~------- 193 (355)
T d2bbkh_ 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE------------GTPEITHTEVFHPED------- 193 (355)
T ss_dssp EEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS------------SCCEEEECCCCSCTT-------
T ss_pred eeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC------------CeEEEEeccccccee-------
Confidence 5555 4422 222211 1223467899999887764332 122233333221110
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-------------e
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------------L 297 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------------~ 297 (751)
...+....+++++.. +++.. ..+.++++++. +.....+.. .
T Consensus 194 ----------~~~~~~~~~~~~~~~-~~~~~------------~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
T d2bbkh_ 194 ----------EFLINHPAYSQKAGR-LVWPT------------YTGKIHQIDLS---SGDAKFLPAVEALTEAERADGWR 247 (355)
T ss_dssp ----------SCBCSCCEEETTTTE-EEEEB------------TTSEEEEEECT---TSSCEECCCEESSCHHHHHTTEE
T ss_pred ----------cceeeeccccCCCCe-EEEec------------CCCeEEEEecC---CCcEEEEeccCCcccceEeeeee
Confidence 001123466777766 55543 22456666654 222211110 1
Q ss_pred ceeEE-EEEecCCceEEEeeeec------ccceeEEEecCCCCCCcceeeee-cccccccCCCCCCCeeeCCCCCEEEEe
Q 004475 298 DLRFS-VSWCDDSLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAK 369 (751)
Q Consensus 298 ~~~~~-~~~spdg~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~spDG~~l~~~ 369 (751)
..... +++++|++.++...... .....|+++++.++ .....+.. ..... ++|||||+.+++.
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~~~~~~~---------~a~spDG~~~l~v 317 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGHEIDS---------INVSQDEKPLLYA 317 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEEEECE---------EEECCSSSCEEEE
T ss_pred ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC-cEEEEecCCCCEEE---------EEEcCCCCeEEEE
Confidence 11223 78999999987765322 13357999998875 22222221 11112 8899999976665
Q ss_pred eeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 370 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
+.. ....|++||+++|+..+.
T Consensus 318 ~~~-------------------~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 318 LST-------------------GDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EET-------------------TTTEEEEEETTTCCEEEE
T ss_pred EEC-------------------CCCEEEEEECCCCCEEEE
Confidence 521 234799999999987543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=5.8e-12 Score=129.40 Aligned_cols=314 Identities=7% Similarity=-0.099 Sum_probs=169.6
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 112 (751)
....+.+|||++.+.+. .....+..+||++|.++++....+.... ...++|||||++|++........
T Consensus 22 ~~~~a~~~~~~~~~v~~-----~~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~- 89 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITL-----PAYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARS- 89 (368)
T ss_dssp CBCCCCCCCTTEEEEEE-----CTTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTT-
T ss_pred ccccccCCCCcceeEEe-----eccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccc-
Confidence 44556788888754432 1222566899999999998777654433 24679999999999874311100
Q ss_pred CCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-ecC--CC------ceEEeeee
Q 004475 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG--TP------AVYTAVEP 182 (751)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt--~~------~~~~~~~~ 182 (751)
....+...|.++|. +++.. .+. .. .....++|
T Consensus 90 --------------------------------------~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~ 131 (368)
T d1mdah_ 90 --------------------------------------AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp --------------------------------------TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred --------------------------------------cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence 00002257899998 66432 221 11 12236889
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|||||+|++.... ...+.+||+.+++.......+..... ........+.+++||+. +++...
T Consensus 132 SpDGk~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~Dg~~-~~~~~~ 193 (368)
T d1mdah_ 132 CASSACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFHI-----HPGAAATHYLGSCPASL-AASDLA 193 (368)
T ss_dssp CTTSSCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCCC-----EEEETTEEECCCCTTSC-EEEECC
T ss_pred CCCCCEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcceE-----ccCCCceEEEEcCCCCE-EEEEec
Confidence 9999999987543 34688999998776554333322110 00112235677888876 444321
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 341 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 341 (751)
. .+ ..+.....+.. . ....... ..+++++..++- . ...++.++...+ ....+.
T Consensus 194 ~-~~---------~~~~~~~~~~~---~-----~~~~~~~~~~~~~~g~~~~~-~-----~~~v~~~~~~~~--~~~~~~ 247 (368)
T d1mdah_ 194 A-AP---------AAAGIVGAQCT---G-----AQNCSSQAAQANYPGMLVWA-V-----ASSILQGDIPAA--GATMKA 247 (368)
T ss_dssp S-SC---------CCCEECCCCSC---T-----TSCBCSCCEEETTTTEEEEC-B-----SSCCEEEECCSS--CCEEEC
T ss_pred C-Cc---------eeeeeeecccc---c-----ccccceeecccccCcEEEEe-c-----CCCEEEEeecCC--ceEEEe
Confidence 1 10 01111111000 0 0111122 466777764432 2 234556665553 222221
Q ss_pred ecccc------cccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccch
Q 004475 342 DRVFE------NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 415 (751)
Q Consensus 342 ~~~~~------~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 415 (751)
..... ..+...+...++++||++.+++..... +.........|++||.++++....+....
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~------------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~- 314 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH------------SRSCLAAAENTSSVTASVGQTSGPISNGH- 314 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC------------SSCTTSCEEEEEEEESSSCCEEECCEEEE-
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC------------CceeecCCceEEEEECCCCcEeEEecCCC-
Confidence 11100 000001223377899998877765331 11112233579999999987543332211
Q ss_pred hhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 416 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
....++|||||+.++|...... ..|+++|+.+|+..+.
T Consensus 315 -----------~~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 315 -----------DSDAIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSS 352 (368)
T ss_dssp -----------EECEEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEE
T ss_pred -----------ceeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 1223689999998777654433 4799999999986653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.44 E-value=3e-12 Score=129.80 Aligned_cols=293 Identities=11% Similarity=-0.001 Sum_probs=155.6
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
|++|+||++|+... ...+|.++|+++++...-...+... ....++|||||++|+.....
T Consensus 2 ~a~~~~~~~l~~~~----------~~~~v~v~D~~t~~~~~t~~~~~~~---~p~~l~~spDG~~l~v~~~~-------- 60 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTAYVLNNH-------- 60 (346)
T ss_dssp CCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSCC---SSCEEEECTTSSEEEEEETT--------
T ss_pred ccCCCCCcEEEEEc----------CCCEEEEEECCCCCEEEEEEcCCCC---CcceEEECCCCCEEEEEECC--------
Confidence 79999999998863 3468999999998865432222110 24688999999998876321
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCce-ecC--CC-----ceEEeeeeCCCC
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG--TP-----AVYTAVEPSPDQ 186 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt--~~-----~~~~~~~~SpDG 186 (751)
...|+++|+ +++.. .+. .. .....++|||||
T Consensus 61 ----------------------------------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG 100 (346)
T d1jmxb_ 61 ----------------------------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG 100 (346)
T ss_dssp ----------------------------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred ----------------------------------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC
Confidence 146888888 66332 221 11 123478999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~ 265 (751)
+++++........ ..........+.+++..+++... +... ........+.+++|++. +...
T Consensus 101 ~~l~v~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~---- 162 (346)
T d1jmxb_ 101 KEVYATVNPTQRL-NDHYVVKPPRLEVFSTADGLEAKPVRTF-----------PMPRQVYLMRAADDGSL--YVAG---- 162 (346)
T ss_dssp SEEEEEEEEEEEC-SSCEEECCCEEEEEEGGGGGGBCCSEEE-----------ECCSSCCCEEECTTSCE--EEES----
T ss_pred CEEEEEecCCcce-eeeeccCcceEEEEecccceeeeEEEee-----------eccCceEEEEecCCCEE--EEeC----
Confidence 9998876542110 00011113456677776543221 1100 00112224456666653 3321
Q ss_pred CCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeee----------------------cccc
Q 004475 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWY----------------------KTSQ 322 (751)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~----------------------~~~~ 322 (751)
..+.++++. ............... ..++|++..++..... ....
T Consensus 163 ----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (346)
T d1jmxb_ 163 ----------PDIYKMDVK---TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229 (346)
T ss_dssp ----------SSEEEECTT---TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred ----------CcceEEEcc---CCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence 234444442 111111111111112 3455555543322100 0112
Q ss_pred eeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecC
Q 004475 323 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 402 (751)
Q Consensus 323 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 402 (751)
..+..++..++... ............. ..+++++..+++.... .+.+||.+
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------------------~v~v~d~~ 280 (346)
T d1jmxb_ 230 YGYLSVDLKTGKTH-TQEFADLTELYFT------GLRSPKDPNQIYGVLN----------------------RLAKYDLK 280 (346)
T ss_dssp EEEEEEETTTCCEE-EEEEEECSSCEEE------EEECSSCTTEEEEEES----------------------EEEEEETT
T ss_pred ceEEEEECCCCceE-EEEeecccceeEE------EEEeCCCCEEEEecCC----------------------eEEEEECC
Confidence 34666666664111 1111111111111 5678888888776622 68889999
Q ss_pred CCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 403 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 403 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
+++......... ....++|||||++|+... . -..|.++|+.+++...
T Consensus 281 ~~~~~~~~~~~~------------~~~~va~s~DG~~l~v~~-~---d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 281 QRKLIKAANLDH------------TYYCVAFDKKGDKLYLGG-T---FNDLAVFNPDTLEKVK 327 (346)
T ss_dssp TTEEEEEEECSS------------CCCEEEECSSSSCEEEES-B---SSEEEEEETTTTEEEE
T ss_pred CCcEEEEEcCCC------------CEEEEEEcCCCCEEEEEe-C---CCcEEEEECccCCEEE
Confidence 887654433221 122368999999887643 2 2579999999887543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.44 E-value=2.8e-11 Score=124.31 Aligned_cols=291 Identities=10% Similarity=-0.061 Sum_probs=154.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...||++|..+ |+..... +.+ ....++|||||++|++................|+++|+.+++.......+..
T Consensus 46 ~~~v~v~D~~t----g~~~~~~--~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~ 118 (373)
T d2madh_ 46 IIQQWVLDAGS----GSILGHV--NGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred CceEEEEECCC----CCEEEEE--eCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCc
Confidence 45799999988 8877543 333 2447899999999999765221111113346799999999987655433321
Q ss_pred cc---cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 84 CL---NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 84 ~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
.. ......+.|+|||+.+++...... ..+.
T Consensus 119 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-----------------------------------------------~~~~ 151 (373)
T d2madh_ 119 PRFDVGPYSWMNANTPNNADLLFFQFAAG-----------------------------------------------PAVG 151 (373)
T ss_pred ceeEeccCCCcEEEEeCCCcEEEEEEcCC-----------------------------------------------CceE
Confidence 10 011235789999999887643211 2333
Q ss_pred EEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCC
Q 004475 161 LGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (751)
Q Consensus 161 ~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (751)
+++. +++.... ......+.++|||+.+++.... ...+.+|+..++............. .
T Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~s~~g~~~~v~~~~------------dg~~~~~~~~~~~~~~~~~~~~~~~------~ 211 (373)
T d2madh_ 152 LVVQGGSSDDQL--LSSPTCYHIHPGAPSTFYLLCA------------QGGLAKTDHAGGAAGAGLVGAMLTA------A 211 (373)
T ss_pred EeeccCCeEEEE--eccceeEEEecCCCcEEEEEcC------------CCeEEEEEcCCceeeEEEeeecccc------C
Confidence 3444 2222111 1234467899999998776543 3457788887665443322111000 0
Q ss_pred ccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCC----------CCCCCceEeEeeceeEE-EEEecC
Q 004475 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP----------AEGEKPEILHKLDLRFS-VSWCDD 308 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~l~~~~~~~~-~~~spd 308 (751)
.......+.+++++.. ++.. ..+.+++++... ........+........ ..+++|
T Consensus 212 ~~~~~~~~~~~~~~~~--~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 277 (373)
T d2madh_ 212 QNLLTQPAQANKSGRI--VWPV------------YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred ccceeeeEEECCCceE--EEec------------CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecC
Confidence 0001123344444432 2211 011222222210 00111111122223334 789999
Q ss_pred CceEEEeeeec------ccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEE
Q 004475 309 SLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 382 (751)
Q Consensus 309 g~~l~~~~~~~------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~ 382 (751)
++.+++..... .....+++++..++ +........ .... .++|||||+.+++....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~--~~~~~~~~~-~~~~------~~a~spDG~~~l~vt~~---------- 338 (373)
T d2madh_ 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLG-HDVD------AISVAQDGGPDLYALSA---------- 338 (373)
T ss_pred CCeEEEecCCCceEEeecCCCeEEEEECCCC--cEEEEecCC-CCee------EEEECCCCCEEEEEEeC----------
Confidence 99887654211 23356888888775 222222111 1111 17899999987665521
Q ss_pred ccCCCCCCCCCceeEEEecCCCceeEEe
Q 004475 383 NGRGFTPEGNIPFLDLFDINTGSKERIW 410 (751)
Q Consensus 383 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 410 (751)
....|++||+.+|+.....
T Consensus 339 ---------~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 339 ---------GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ---------CCCeEEEEECCCCCEEEEE
Confidence 2347999999999875443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=2.3e-10 Score=117.82 Aligned_cols=287 Identities=11% Similarity=0.095 Sum_probs=159.9
Q ss_pred ccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC--------------ccccceeeeeEEec
Q 004475 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--------------ICLNAVFGSFVWVN 96 (751)
Q Consensus 31 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~--------------~~~~~~~~~~~wsp 96 (751)
..+...+|||||++||... ...|.++++.+++...-..... ......+..++|||
T Consensus 63 ~~V~~l~fs~dg~~lasg~-----------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 131 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEe-----------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence 3688999999999988731 2467778887776432211110 00111356789999
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC
Q 004475 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP 174 (751)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~ 174 (751)
||++|+..+.+ ..|.+++. .++ ...+..+
T Consensus 132 ~~~~l~s~~~d-------------------------------------------------g~v~i~~~~~~~~~~~~~~h 162 (388)
T d1erja_ 132 DGKFLATGAED-------------------------------------------------RLIRIWDIENRKIVMILQGH 162 (388)
T ss_dssp TSSEEEEEETT-------------------------------------------------SCEEEEETTTTEEEEEECCC
T ss_pred CCCcceecccc-------------------------------------------------cccccccccccccccccccc
Confidence 99999877542 35666676 553 3333333
Q ss_pred -ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeee-cC
Q 004475 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-AD 252 (751)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-pd 252 (751)
..+..+.|++++..++..... ..+.+|+..+........... ....+.++ +|
T Consensus 163 ~~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 216 (388)
T d1erja_ 163 EQDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIED-------------GVTTVAVSPGD 216 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECSS-------------CEEEEEECSTT
T ss_pred cccccccccccccccccccccc-------------eeeeeeecccccccccccccc-------------ccccccccCCC
Confidence 678899999999998876543 357889988765443322211 11233444 46
Q ss_pred CCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEe-------EeeceeEE-EEEecCCceEEEeeeeccccee
Q 004475 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRFS-VSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 253 G~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~ 324 (751)
|+. |+... ..+.|++++... +.....+ ......+. +.|+|||+.|+..+. + ..
T Consensus 217 ~~~-l~~~~------------~d~~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--d--~~ 277 (388)
T d1erja_ 217 GKY-IAAGS------------LDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--D--RS 277 (388)
T ss_dssp CCE-EEEEE------------TTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET--T--SE
T ss_pred CCe-EEEEc------------CCCeEEEeeccc--CccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC--C--Cc
Confidence 665 54433 224577777641 1111111 11234566 899999998876552 2 34
Q ss_pred EEEecCCCCCCcce--------ee--eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCc
Q 004475 325 TWLVCPGSKDVAPR--------VL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 394 (751)
Q Consensus 325 l~~~~~~~~~~~~~--------~l--~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (751)
|.+.++.+...... .+ .......+.. ++|+|||++|+..+.+ .
T Consensus 278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~~~~~l~sg~~d---------------------g 330 (388)
T d1erja_ 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYILSGSKD---------------------R 330 (388)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEE------EEECGGGCEEEEEETT---------------------S
T ss_pred EEEEeccCCccccccccccccceeeecccccceEEE------EEECCCCCEEEEEeCC---------------------C
Confidence 55555544311100 00 0011111111 7899999998887732 2
Q ss_pred eeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEc
Q 004475 395 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 458 (751)
Q Consensus 395 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~ 458 (751)
.|++||+.+++....+..... .+..+. ......|+||++.|+-. ... +.|.++++
T Consensus 331 ~i~vwd~~~~~~~~~l~~H~~----~V~~~~-~~~~~~~spd~~~l~s~-s~D---g~I~iW~~ 385 (388)
T d1erja_ 331 GVLFWDKKSGNPLLMLQGHRN----SVISVA-VANGSSLGPEYNVFATG-SGD---CKARIWKY 385 (388)
T ss_dssp EEEEEETTTCCEEEEEECCSS----CEEEEE-ECSSCTTCTTCEEEEEE-ETT---SEEEEEEE
T ss_pred EEEEEECCCCcEEEEEeCCCC----CEEEEE-EecCcccCCCCCEEEEE-eCC---CEEEEEee
Confidence 788999998887555443221 122221 11224689999866643 332 34666664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=7.3e-11 Score=121.13 Aligned_cols=229 Identities=11% Similarity=0.109 Sum_probs=124.5
Q ss_pred eEEEEEcC-CCC---ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCC
Q 004475 157 AQLVLGSL-DGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (751)
Q Consensus 157 ~~l~~~~~-~G~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (751)
..|.++++ +++ ...+..+ ..+..++|||||++|+..+.+ ..+.+|+++++..+......
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-------------~~i~vWd~~~~~~~~~~~~~--- 92 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-------------RNAYVWTLKGRTWKPTLVIL--- 92 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-------------SCEEEEEEETTEEEEEEECC---
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-------------CeEEEEeecccccccccccc---
Confidence 35777777 443 2334444 678999999999998876433 35889998766544332111
Q ss_pred CCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE----eeceeEE-EEEe
Q 004475 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFS-VSWC 306 (751)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~~~~-~~~s 306 (751)
.....+..+.|+|||+. ++..+ ..+.+.+++.+. ......+. .....+. +.|+
T Consensus 93 -------~~~~~v~~i~~~p~~~~-l~~~s------------~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 93 -------RINRAARCVRWAPNEKK-FAVGS------------GSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp -------CCSSCEEEEEECTTSSE-EEEEE------------TTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEEC
T ss_pred -------ccccccccccccccccc-ceeec------------ccCcceeeeeec--cccccccccccccccccccccccc
Confidence 11233568899999998 55543 123455554431 11111111 1233456 8999
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcc------------eeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAP------------RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 374 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~ 374 (751)
|||+.|+.++. ++.-.+|........... ..+....... .....++|+|||+.|+..+.+
T Consensus 151 p~~~~l~s~s~--D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~s~~~d-- 222 (371)
T d1k8kc_ 151 PNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHD-- 222 (371)
T ss_dssp TTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----SCEEEEEECSSSSEEEEEETT--
T ss_pred ccccceecccc--CcEEEEEeeccCccccccccccccccccceeeeeeccCcc----CcEEEEEeecccccccccccC--
Confidence 99999876652 233344443322110000 0111100000 000126799999999887732
Q ss_pred CcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEE
Q 004475 375 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYH 454 (751)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~ 454 (751)
..|.+||+.+++.......... .+. .++|+||++.|+ .. . .....++
T Consensus 223 -------------------~~i~iwd~~~~~~~~~~~~~~~----~v~-------s~~fs~d~~~la-~g-~-d~~~~~~ 269 (371)
T d1k8kc_ 223 -------------------STVCLADADKKMAVATLASETL----PLL-------AVTFITESSLVA-AG-H-DCFPVLF 269 (371)
T ss_dssp -------------------TEEEEEEGGGTTEEEEEECSSC----CEE-------EEEEEETTEEEE-EE-T-TSSCEEE
T ss_pred -------------------CcceEEeeecccceeeeecccc----cce-------eeeecCCCCEEE-EE-c-CCceEEE
Confidence 3688999987765433322111 011 257899986554 32 2 3344677
Q ss_pred EEEcCCCcee
Q 004475 455 ILSWPLKKSS 464 (751)
Q Consensus 455 ~~~~~~g~~~ 464 (751)
..+...++..
T Consensus 270 ~~~~~~~~~~ 279 (371)
T d1k8kc_ 270 TYDSAAGKLS 279 (371)
T ss_dssp EEETTTTEEE
T ss_pred EeeCCCceEE
Confidence 7776555443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.38 E-value=2.3e-11 Score=120.67 Aligned_cols=252 Identities=12% Similarity=0.088 Sum_probs=141.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+||+.+ |+..+...-.....+...+|+|||+.++. .....+.+++..+.+........ .
T Consensus 33 Dg~v~vWd~~~----~~~~~~~~~~h~~~v~~v~~~~~g~~~~~-----------~~d~~v~~~~~~~~~~~~~~~~~-~ 96 (299)
T d1nr0a2 33 EGHINSWDIST----GISNRVFPDVHATMITGIKTTSKGDLFTV-----------SWDDHLKVVPAGGSGVDSSKAVA-N 96 (299)
T ss_dssp TSCEEEEETTT----CCEEECSSCSCSSCEEEEEECTTSCEEEE-----------ETTTEEEEECSSSSSSCTTSCCE-E
T ss_pred CCeEEEEECCC----CcEEEEEcCCCCCcEEEEEeeccceeecc-----------cceeeEEEeccCCcccccccccc-c
Confidence 34689999988 88766542122335788999999976554 23356777776654322221110 0
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.....+..++|+|||+.++.... ..+.+++
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~~--------------------------------------------------~~i~~~~ 126 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAACY--------------------------------------------------KHIAIYS 126 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEES--------------------------------------------------SEEEEEE
T ss_pred ccccccccccccccccccccccc--------------------------------------------------ccccccc
Confidence 11112457899999998776532 2344444
Q ss_pred CCCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCC
Q 004475 164 LDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (751)
Q Consensus 164 ~~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (751)
. ++...+........++|+||+++|++...+ ..+.+||+++++...+.... ....
T Consensus 127 ~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------------g~i~~~d~~~~~~~~~~~~~-----------~~~~ 181 (299)
T d1nr0a2 127 H-GKLTEVPISYNSSCVALSNDKQFVAVGGQD-------------SKVHVYKLSGASVSEVKTIV-----------HPAE 181 (299)
T ss_dssp T-TEEEEEECSSCEEEEEECTTSCEEEEEETT-------------SEEEEEEEETTEEEEEEEEE-----------CSSC
T ss_pred c-cccccccccccccccccccccccccccccc-------------cccccccccccccccccccc-----------cccc
Confidence 3 222222222445678999999998875433 36889998876654332111 1123
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC-CCCceEeEeeceeEE-EEEecCCceEEEeeeeccc
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTS 321 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~ 321 (751)
+..++|+|+|+. |+... ..+.++++++.... -.....+......+. ++|+|+|+.|+....
T Consensus 182 i~~~~~~~~~~~-l~~~~------------~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~---- 244 (299)
T d1nr0a2 182 ITSVAFSNNGAF-LVATD------------QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL---- 244 (299)
T ss_dssp EEEEEECTTSSE-EEEEE------------TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET----
T ss_pred cccccccccccc-ccccc------------cccccccccccccccccccccccccccccccccccccccceEEEcC----
Confidence 568899999998 55543 23467777763100 001112223344566 899999999887652
Q ss_pred ceeEEEecCCCCCCcceeeeec-ccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 322 QTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...|.+.++.++.......... ....+. ..++++++.|+..+
T Consensus 245 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVN-------SVIWLNETTIVSAG 287 (299)
T ss_dssp TSCEEEEETTCTTSCCEEETTSSTTSCEE-------EEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCCcceEEEecCCCCCcEE-------EEEECCCCEEEEEe
Confidence 2356666666542222222111 111111 23557777777766
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.38 E-value=2.3e-14 Score=144.41 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=124.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 573 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~ 573 (751)
+.+.++.|.+ +.+.| ||++||++..+.. ....++. ....+..++++||.|++ .+.+|+|.+..
T Consensus 46 ~~v~~~~p~~-----~~~~P-vvllHG~~~~~~~----w~~~~~~----~~~~~~~~~~~Gy~V~~---~D~~G~G~S~~ 108 (318)
T d1qlwa_ 46 MYVRYQIPQR-----AKRYP-ITLIHGCCLTGMT----WETTPDG----RMGWDEYFLRKGYSTYV---IDQSGRGRSAT 108 (318)
T ss_dssp EEEEEEEETT-----CCSSC-EEEECCTTCCGGG----GSSCTTS----CCCHHHHHHHTTCCEEE---EECTTSTTSCC
T ss_pred EEEEEECCCC-----CCCCc-EEEECCCCCCcCc----cccCccc----chhHHHHHHhCCCEEEE---ecCCCCCCCCC
Confidence 5566677765 23466 6678998743211 1111111 22457788999999999 56668877754
Q ss_pred CchhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc-eeEEEEccCCCCCCC---CccCc--
Q 004475 574 NDRFV--EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL-FCCGIARSGSYNKTL---TPFGF-- 645 (751)
Q Consensus 574 ~~~~~--~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~~~~d~~~---~~~~~-- 645 (751)
..... .....++...++ .-.....++++.|||+||.++..++...+.. ....++..+...... .....
T Consensus 109 ~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (318)
T d1qlwa_ 109 DISAINAVKLGKAPASSLP----DLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVA 184 (318)
T ss_dssp CCHHHHHHHTTSSCGGGSC----CCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHH
T ss_pred ccccCCHHHHHHHHHHHHH----HHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHH
Confidence 33211 111111111111 1112234677889999998887776554322 111111111110000 00000
Q ss_pred -----------------ccccccchhhHHH-------------HHhcCcccccCCCCCCEEEEEcCCCCCCCCCh-----
Q 004475 646 -----------------QTEFRTLWEATNV-------------YIEMSPITHANKIKKPILIIHGEVDDKVGLFP----- 690 (751)
Q Consensus 646 -----------------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~----- 690 (751)
.......|..... .....+......+++|+|++||++|.++| .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p--~~~~~~ 262 (318)
T d1qlwa_ 185 NLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFP--RWAPRL 262 (318)
T ss_dssp HHHHHHHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCT--TTHHHH
T ss_pred HHHHHHhhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccC--hhhhHH
Confidence 0000000000000 00112344556678999999999999987 4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeC-----CCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 691 MQAERFFDALKGHGALSRLVLLP-----FEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 691 ~~~~~~~~~l~~~~~~~~~~~~~-----~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
..+..+++.+++++.++++..+| |++|.++...+.+++.+.+.+||+++
T Consensus 263 ~~~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 263 KACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 34556778889999999999977 56799876666789999999999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.9e-10 Score=114.09 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=156.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||..+ ..+.|.++++.+++.......... .+..++|+|++..++......
T Consensus 19 ~I~~l~~sp~~~~l~s~s----------~Dg~i~iWd~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~~~~~~~~--- 81 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSAS----------EDATIKVWDYETGDFERTLKGHTD----SVQDISFDHSGKLLASCSADM--- 81 (317)
T ss_dssp CEEEEEECSSSSEEEEEE----------SSSCEEEEETTTCCCCEEECCCSS----CEEEEEECTTSSEEEEEETTS---
T ss_pred CeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCCEEEEEeCCCC----cEEEEeeeccccccccccccc---
Confidence 588999999999988753 236788889888875544332221 477899999999988774321
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceecCCC-ceEEeeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~lt~~-~~~~~~~~SpDG~~ 188 (751)
.+...+. ..+ ...+... .......|+|+++.
T Consensus 82 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (317)
T d1vyhc1 82 ----------------------------------------------TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115 (317)
T ss_dssp ----------------------------------------------CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred ----------------------------------------------ccccccccccccccccccccccceeeeccCCCce
Confidence 1122222 222 2222222 56678899999999
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~ 268 (751)
|+....+ ..+.+|++.++....... .....+..+.|+|||+. ++...
T Consensus 116 ~~~~~~d-------------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-l~~~~------- 162 (317)
T d1vyhc1 116 IVSASRD-------------KTIKMWEVQTGYCVKTFT------------GHREWVRMVRPNQDGTL-IASCS------- 162 (317)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEE------------CCSSCEEEEEECTTSSE-EEEEE-------
T ss_pred EEeeccC-------------cceeEeecccceeeeEEc------------cCCCcceeeecccCCCE-EEEEe-------
Confidence 8876443 357789987654332211 11123457899999997 55443
Q ss_pred ccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeee----------------ecccceeEEEecCC
Q 004475 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETW----------------YKTSQTRTWLVCPG 331 (751)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~----------------~~~~~~~l~~~~~~ 331 (751)
..+.+++++... ......+......+. +.|+|++..+..... .......|.+.+..
T Consensus 163 -----~d~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 163 -----NDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp -----TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred -----CCCeEEEEeecc--ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 234677777641 112223333344455 777777653221110 00122456666766
Q ss_pred CCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 332 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
++ ............+.. ++|+|+|+.|+..+.+ ..|.+||+.+++....+.
T Consensus 236 ~~--~~~~~~~~~~~~v~~------~~~~~~~~~l~s~~~d---------------------g~i~iwd~~~~~~~~~~~ 286 (317)
T d1vyhc1 236 TG--MCLMTLVGHDNWVRG------VLFHSGGKFILSCADD---------------------KTLRVWDYKNKRCMKTLN 286 (317)
T ss_dssp TT--EEEEEEECCSSCEEE------EEECSSSSCEEEEETT---------------------TEEEEECCTTSCCCEEEE
T ss_pred CC--cEEEEEeCCCCCEEE------EEECCCCCEEEEEECC---------------------CeEEEEECCCCcEEEEEc
Confidence 64 222222222222222 7899999998887732 378899998887655544
Q ss_pred ccchhhhhceeeeecCCcceeeccCCCEEEEE
Q 004475 412 SNREKYFETAVALVFGQGEEDINLNQLKILTS 443 (751)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 443 (751)
.... .+.. ++||||++.|+..
T Consensus 287 ~h~~----~V~~-------~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 287 AHEH----FVTS-------LDFHKTAPYVVTG 307 (317)
T ss_dssp CCSS----CEEE-------EEECSSSSCEEEE
T ss_pred CCCC----CEEE-------EEEcCCCCEEEEE
Confidence 3211 1222 4799999877743
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.36 E-value=3.9e-11 Score=121.37 Aligned_cols=291 Identities=10% Similarity=-0.031 Sum_probs=157.1
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.++|+.+ ++......++.+......+|||||++++... .....|+++|+.+++..........
T Consensus 17 ~~~v~v~D~~t----~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---------~~~~~v~~~d~~t~~~~~~~~~~~~ 83 (346)
T d1jmxb_ 17 PNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---------NHYGDIYGIDLDTCKNTFHANLSSV 83 (346)
T ss_dssp TTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEE---------TTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEECCC----CCEEEEEEcCCCCCcceEEECCCCCEEEEEE---------CCCCcEEEEeCccCeeeeeeccccc
Confidence 45899999999 8876543355555577899999999886643 3457899999999875443222211
Q ss_pred c--ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEE
Q 004475 84 C--LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (751)
Q Consensus 84 ~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (751)
. .......+++||||++|+........... ........+.+
T Consensus 84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~-------------------------------------~~~~~~~~i~~ 126 (346)
T d1jmxb_ 84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLND-------------------------------------HYVVKPPRLEV 126 (346)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSS-------------------------------------CEEECCCEEEE
T ss_pred ccccCCceEEEEEecCCCEEEEEecCCcceee-------------------------------------eeccCcceEEE
Confidence 1 11123478999999999877432110000 00001135666
Q ss_pred EcC-CCCce-ec---CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCc
Q 004475 162 GSL-DGTAK-DF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 162 ~~~-~G~~~-~l---t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (751)
++. +++.. .+ ..+.......+++|++.++. ..++.+|+..+++........
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-------- 182 (346)
T d1jmxb_ 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA----------------GPDIYKMDVKTGKYTVALPLR-------- 182 (346)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE----------------SSSEEEECTTTCCEEEEECST--------
T ss_pred EecccceeeeEEEeeeccCceEEEEecCCCEEEEe----------------CCcceEEEccCCCEEEEEecC--------
Confidence 666 55321 22 11233445667777765432 123567777655433221111
Q ss_pred cCCccCCCceeeeecCCCceEEEEEeccC--------------CCCccccCcccceeeccCCCCCCCCceE--eEeecee
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVEAQDR--------------GDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKLDLR 300 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~~~~~ 300 (751)
...+.+.++|+|.. ++....... ............+.+++.. ...... .......
T Consensus 183 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 253 (346)
T d1jmxb_ 183 -----NWNRKGYSAPDVLY-FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK---TGKTHTQEFADLTEL 253 (346)
T ss_dssp -----TCCCTTBCCCBCCC-CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT---TCCEEEEEEEECSSC
T ss_pred -----CCccceEEeccccE-EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC---CCceEEEEeecccce
Confidence 11234466666665 222110000 0000011122356666664 222222 2223334
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceE
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 379 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~ 379 (751)
.. ..+++++..+++... ..+.++|+.++ +........ ..... ++|||||++|+....+
T Consensus 254 ~~~~~~~~~~~~~~~~~~-----~~v~v~d~~~~--~~~~~~~~~-~~~~~------va~s~DG~~l~v~~~d------- 312 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGVL-----NRLAKYDLKQR--KLIKAANLD-HTYYC------VAFDKKGDKLYLGGTF------- 312 (346)
T ss_dssp EEEEEECSSCTTEEEEEE-----SEEEEEETTTT--EEEEEEECS-SCCCE------EEECSSSSCEEEESBS-------
T ss_pred eEEEEEeCCCCEEEEecC-----CeEEEEECCCC--cEEEEEcCC-CCEEE------EEEcCCCCEEEEEeCC-------
Confidence 44 788999998887552 35788888774 222222211 11222 8899999999876622
Q ss_pred EEEccCCCCCCCCCceeEEEecCCCceeEEeec
Q 004475 380 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 412 (751)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 412 (751)
..|.+||+++++.......
T Consensus 313 --------------~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 313 --------------NDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp --------------SEEEEEETTTTEEEEEEEC
T ss_pred --------------CcEEEEECccCCEEEEEEC
Confidence 2688999999877544443
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.36 E-value=5e-12 Score=125.04 Aligned_cols=211 Identities=10% Similarity=-0.057 Sum_probs=120.2
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 568 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~ 568 (751)
.+|.++..... + ..|+||++||.+. +...|.. +... ++++|.|++ ++.+|+
T Consensus 15 ~~g~~i~y~~~---G-------~g~~vvllHG~~~-----------~~~~~~~----~~~~-L~~~~~vi~---~Dl~G~ 65 (298)
T d1mj5a_ 15 IKGRRMAYIDE---G-------TGDPILFQHGNPT-----------SSYLWRN----IMPH-CAGLGRLIA---CDLIGM 65 (298)
T ss_dssp ETTEEEEEEEE---S-------CSSEEEEECCTTC-----------CGGGGTT----TGGG-GTTSSEEEE---ECCTTS
T ss_pred ECCEEEEEEEE---c-------CCCcEEEECCCCC-----------CHHHHHH----HHHH-HhcCCEEEE---EeCCCC
Confidence 46777776543 1 1378999999642 1122222 1222 346789999 566677
Q ss_pred CCCCCCch--hHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc
Q 004475 569 GDKLPNDR--FVE-QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF 645 (751)
Q Consensus 569 g~~~~~~~--~~~-~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~ 645 (751)
|.+..... ... ....+....+..+.+.. ..+++.++||||||.+++.++.++|+++.++++..+...........
T Consensus 66 G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~ 143 (298)
T d1mj5a_ 66 GDSDKLDPSGPERYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFP 143 (298)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSC
T ss_pred CCCCCCccccccccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhh
Confidence 76643211 111 11122223333333332 34689999999999999999999999999999877653211100000
Q ss_pred ccc------------------c------------ccch----------------hhHHHH------------------Hh
Q 004475 646 QTE------------------F------------RTLW----------------EATNVY------------------IE 661 (751)
Q Consensus 646 ~~~------------------~------------~~~~----------------~~~~~~------------------~~ 661 (751)
... . .... ...... ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298)
T d1mj5a_ 144 EQDRDLFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIA 223 (298)
T ss_dssp GGGHHHHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhh
Confidence 000 0 0000 000000 00
Q ss_pred cCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHHH
Q 004475 662 MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 662 ~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
......+..+++|+|+++|++|...+ ....++. +.-...++++. ++||... .+..+++.+.+.+||++.
T Consensus 224 ~~~~~~~~~~~~P~l~i~g~~d~~~~---~~~~~~~----~~~p~~~~~~~-~~GH~~~-~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 224 RDYAGWLSESPIPKLFINAEPGALTT---GRMRDFC----RTWPNQTEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp HHHHHHHTTCCSCEEEEEEEECSSSS---HHHHHHH----TTCSSEEEEEE-EESSCGG-GTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcceeEEEEecCCCCcCh---HHHHHHH----HHCCCCEEEEe-CCCCchH-HhCHHHHHHHHHHHHhhh
Confidence 00112246788999999999998765 4444433 33234556555 5689876 677889999999999886
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=4.3e-10 Score=112.84 Aligned_cols=168 Identities=11% Similarity=0.003 Sum_probs=94.1
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee-eeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..++|+|||++|+...... ...+.+++.++++. ..+.. ....+..++|+|++
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~ 171 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGR-----------DNFGVFISWDSGNSLGEVSG-------------HSQRINACHLKQSR 171 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCS-----------SCSEEEEETTTCCEEEECCS-------------CSSCEEEEEECSSS
T ss_pred CcEEEEEECCCCCccceeeccc-----------cceEEEEeecccccceeeee-------------cccccccccccccc
Confidence 5677899999999998876543 22355677665432 22211 11235578999999
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeE---eeceeEE-EEEecCCceEEEeeeecccceeEEEec
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVC 329 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~ 329 (751)
+.+++..+ ..+.+.+++... ......+. .....+. ++|+||+..++.+.. ....|.+++
T Consensus 172 ~~~~~~~~------------~d~~v~~~d~~~--~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~---~d~~i~iwd 234 (325)
T d1pgua1 172 PMRSMTVG------------DDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDRKISCFD 234 (325)
T ss_dssp SCEEEEEE------------TTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTCCEEEEE
T ss_pred cceEEEee------------cccccccccccc--cccceecccccCCCCccEEeeeccccceeccccc---cccceeeee
Confidence 98333332 224566676531 11111111 1233356 899998654443331 123566667
Q ss_pred CCCCCCcceeeeecccccccCCCCCCCeeeC---CCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCce
Q 004475 330 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRT---STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 406 (751)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s---pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 406 (751)
..++ +...........+.. ..|+ |||++|+..+.+ ..|.+||+.+++.
T Consensus 235 ~~~~--~~~~~l~~~~~~v~~------~~~s~~~~dg~~l~s~s~D---------------------~~i~iwd~~~~~~ 285 (325)
T d1pgua1 235 GKSG--EFLKYIEDDQEPVQG------GIFALSWLDSQKFATVGAD---------------------ATIRVWDVTTSKC 285 (325)
T ss_dssp TTTC--CEEEECCBTTBCCCS------CEEEEEESSSSEEEEEETT---------------------SEEEEEETTTTEE
T ss_pred eccc--ccccccccccccccc------ceeeeeccCCCEEEEEeCC---------------------CeEEEEECCCCCE
Confidence 7664 222222222222211 3344 799988887732 2688999998877
Q ss_pred eEEeec
Q 004475 407 ERIWES 412 (751)
Q Consensus 407 ~~l~~~ 412 (751)
.+.+..
T Consensus 286 ~~~~~~ 291 (325)
T d1pgua1 286 VQKWTL 291 (325)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=3.1e-11 Score=123.82 Aligned_cols=266 Identities=9% Similarity=-0.092 Sum_probs=142.9
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
..+||++|.++ ++...... .+ ....++|||||+.|++..........+.....|+++|+.+++.......+..
T Consensus 45 ~~~~~~~d~~~----~~~~~~~~--~~-~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~ 117 (368)
T d1mdah_ 45 TTENWVSCAGC----GVTLGHSL--GA-FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp SEEEEEEETTT----TEEEEEEE--EC-TTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred cceEEEEeCCC----CcEEEEEe--CC-CCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence 45799999988 88877652 22 2457999999999999875221111123346799999998876543221111
Q ss_pred c---ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEE
Q 004475 84 C---LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (751)
Q Consensus 84 ~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (751)
. .......++|||||++|++..... ..++
T Consensus 118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~------------------------------------------------~~v~ 149 (368)
T d1mdah_ 118 PRFSVGPRVHIIGNCASSACLLFFLFGS------------------------------------------------SAAA 149 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSS------------------------------------------------SCEE
T ss_pred ceecccCCccceEECCCCCEEEEEeCCC------------------------------------------------CeEE
Confidence 0 000123679999999999874321 2455
Q ss_pred EEcC-CCCce-ecCCC--------ceEEeeeeCCCCceEEEEEecCCccccc--------c-----------c----CCC
Q 004475 161 LGSL-DGTAK-DFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKV--------P-----------C----ARF 207 (751)
Q Consensus 161 ~~~~-~G~~~-~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~--------~-----------~----~~~ 207 (751)
++|+ +++.. .+..+ .....+.+++||+.+++........... . . ...
T Consensus 150 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred EEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 5565 44221 11111 1122456777777666654332110000 0 0 001
Q ss_pred ceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCC
Q 004475 208 SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (751)
Q Consensus 208 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (751)
...+++++..++....+..................+...++++|+++. ++....... .. .......|+++|.+
T Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~-~~v~~~~~~-~~--~~~~~~~v~v~D~~--- 302 (368)
T d1mdah_ 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG-IMILTVEHS-RS--CLAAAENTSSVTAS--- 302 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE-EEEEEEECS-SC--TTSCEEEEEEEESS---
T ss_pred CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE-EEEEecCCC-ce--eecCCceEEEEECC---
Confidence 234666666655554443322211110000111123456899999998 554432211 11 11222478888885
Q ss_pred CCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCC
Q 004475 288 GEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 288 ~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+++............ +.|||||+.++|.+... ...|+++|..++
T Consensus 303 t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~--~~~v~v~D~~tg 347 (368)
T d1mdah_ 303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASD 347 (368)
T ss_dssp SCCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSC
T ss_pred CCcEeEEecCCCceeEEEECCCCCEEEEEEeCC--CCeEEEEECCCC
Confidence 333222222233344 89999999887777432 357999999885
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=3.9e-10 Score=113.33 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=82.3
Q ss_pred CceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhh
Q 004475 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (751)
Q Consensus 60 ~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (751)
...+|.++|+++++........... .....+++||||++|+.....
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~~~~~~--~~~~~i~~spDg~~l~v~~~~-------------------------------- 54 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPGGRIAYATVNK-------------------------------- 54 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTTSSEEEEEETT--------------------------------
T ss_pred CCCEEEEEECCCCeEEEEEECCCCC--CCccEEEECCCCCEEEEEECC--------------------------------
Confidence 3478999999998754433222111 124678999999998765221
Q ss_pred hccCCccchhhhhhheeeEEEEEcC-CCCce-ecCCC------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeE
Q 004475 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKV 211 (751)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~-~lt~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l 211 (751)
...|+++|+ +|+.. .+... .....++|||||+++++........ ..........+
T Consensus 55 ----------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~-~~~~~~~~~~~ 117 (337)
T d1pbyb_ 55 ----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE-LTHFEVQPTRV 117 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC-SSCEEECCCEE
T ss_pred ----------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce-eeeccccccce
Confidence 147888898 77432 33221 1233789999999998876543211 00011123567
Q ss_pred EEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEE
Q 004475 212 QVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (751)
Q Consensus 212 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~ 260 (751)
.++|..+++........ ..+..++|+|||++ ++..
T Consensus 118 ~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~ 152 (337)
T d1pbyb_ 118 ALYDAETLSRRKAFEAP-------------RQITMLAWARDGSK-LYGL 152 (337)
T ss_dssp EEEETTTTEEEEEEECC-------------SSCCCEEECTTSSC-EEEE
T ss_pred eeccccCCeEEEecccc-------------CCceEEEEcCCCCE-EEEE
Confidence 88998877654332221 23457899999998 5554
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.4e-11 Score=116.78 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=56.7
Q ss_pred hHHHHHHh--CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004475 545 TSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 622 (751)
Q Consensus 545 ~~~~~~~~--~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~ 622 (751)
.+...|.+ .||.|++ .+.+|+|.+..+..+ ..+++.+.+..+.+. .. +++.++||||||.+|+.+|.++
T Consensus 20 ~~~~~l~~~~~~~~v~~---~d~~G~g~S~~~~~~---~~~~~~~~l~~~l~~--l~-~~~~lvGhS~GG~ia~~~a~~~ 90 (268)
T d1pjaa_ 20 HLLEYINETHPGTVVTV---LDLFDGRESLRPLWE---QVQGFREAVVPIMAK--AP-QGVHLICYSQGGLVCRALLSVM 90 (268)
T ss_dssp HHHHHHHHHSTTCCEEE---CCSSCSGGGGSCHHH---HHHHHHHHHHHHHHH--CT-TCEEEEEETHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCCeEEEE---eCCCCCCCCCCcccc---CHHHHHHHHHHHHhc--cC-CeEEEEccccHHHHHHHHHHHC
Confidence 34456665 4899999 667788887554321 223333333333332 23 6899999999999999999999
Q ss_pred CC-ceeEEEEccCC
Q 004475 623 PH-LFCCGIARSGS 635 (751)
Q Consensus 623 p~-~~~~~v~~~~~ 635 (751)
|+ +++.+|+.++.
T Consensus 91 p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 91 DDHNVDSFISLSSP 104 (268)
T ss_dssp TTCCEEEEEEESCC
T ss_pred CccccceEEEECCC
Confidence 98 69999888764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=1.3e-09 Score=112.02 Aligned_cols=238 Identities=14% Similarity=0.079 Sum_probs=133.6
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++|+..+ ..+.|.+++...++.......... .+..+.|++++..++..+..
T Consensus 123 ~V~~l~~s~~~~~l~s~~----------~dg~v~i~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~~---- 184 (388)
T d1erja_ 123 YIRSVCFSPDGKFLATGA----------EDRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGDKLVSGSGD---- 184 (388)
T ss_dssp BEEEEEECTTSSEEEEEE----------TTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEECCCCCcceecc----------cccccccccccccccccccccccc----cccccccccccccccccccc----
Confidence 467789999999998753 335688888887765554433221 36788999999988877432
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCCceEE-eeeeCCCCce
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYT-AVEPSPDQKY 188 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~~~~~-~~~~SpDG~~ 188 (751)
..+.+++. +... .......... ...+++||+.
T Consensus 185 ---------------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T d1erja_ 185 ---------------------------------------------RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219 (388)
T ss_dssp ---------------------------------------------SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred ---------------------------------------------eeeeeeeccccccccccccccccccccccCCCCCe
Confidence 46677777 3322 2222223333 3445568888
Q ss_pred EEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
|+....+ ..+.+|+..++... .+.... . ........+..+.|+|||+. |+..+
T Consensus 220 l~~~~~d-------------~~i~i~~~~~~~~~~~~~~~~-~-----~~~~h~~~v~~l~~s~~~~~-l~s~~------ 273 (388)
T d1erja_ 220 IAAGSLD-------------RAVRVWDSETGFLVERLDSEN-E-----SGTGHKDSVYSVVFTRDGQS-VVSGS------ 273 (388)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSE-EEEEE------
T ss_pred EEEEcCC-------------CeEEEeecccCccceeecccc-c-----cccCCCCCEEEEEECCCCCE-EEEEE------
Confidence 8765433 35888998765432 221111 0 01112234678999999997 55433
Q ss_pred CccccCcccceeeccCCCCCC----------CCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCc
Q 004475 268 ANVEVSPRDIIYTQPAEPAEG----------EKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 336 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~----------~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (751)
..+.|.++++..... ............+. ++|+|+|++|+.+.. ...|.+.|+.++ +
T Consensus 274 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~--~ 341 (388)
T d1erja_ 274 ------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----DRGVLFWDKKSG--N 341 (388)
T ss_dssp ------TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----TSEEEEEETTTC--C
T ss_pred ------CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC----CCEEEEEECCCC--c
Confidence 224666666531100 00111112234456 899999998887652 246777788774 2
Q ss_pred ceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 337 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
...........+......+...|+|||+.|+..+
T Consensus 342 ~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 342 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 2222222111111100111145899999888777
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=2.2e-09 Score=106.22 Aligned_cols=247 Identities=15% Similarity=0.098 Sum_probs=146.7
Q ss_pred cceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
...|.+||+.+ ++....-. .....+....|+|+|..++.... ...+...+....+..........
T Consensus 38 Dg~i~iWd~~~----~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 102 (317)
T d1vyhc1 38 DATIKVWDYET----GDFERTLK-GHTDSVQDISFDHSGKLLASCSA----------DMTIKLWDFQGFECIRTMHGHDH 102 (317)
T ss_dssp SSCEEEEETTT----CCCCEEEC-CCSSCEEEEEECTTSSEEEEEET----------TSCCCEEETTSSCEEECCCCCSS
T ss_pred CCeEEEEECCC----CCEEEEEe-CCCCcEEEEeeeccccccccccc----------ccccccccccccccccccccccc
Confidence 45699999988 77655321 12235788999999999988642 23444555555554443322221
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
.+....|+|+++.|+....+ ..+.+++
T Consensus 103 ----~~~~~~~~~~~~~~~~~~~d-------------------------------------------------~~~~~~~ 129 (317)
T d1vyhc1 103 ----NVSSVSIMPNGDHIVSASRD-------------------------------------------------KTIKMWE 129 (317)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----cceeeeccCCCceEEeeccC-------------------------------------------------cceeEee
Confidence 35678999999998877432 3566677
Q ss_pred C-CCC-ceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCC
Q 004475 164 L-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNS 239 (751)
Q Consensus 164 ~-~G~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~ 239 (751)
+ +++ ...+..+ ..+..++|+|||+.|+....+ ..+.+|+..+++... +....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~----------- 185 (317)
T d1vyhc1 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREHR----------- 185 (317)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCCS-----------
T ss_pred cccceeeeEEccCCCcceeeecccCCCEEEEEeCC-------------CeEEEEeeccceeeEEEecCC-----------
Confidence 7 553 3344434 667789999999998876543 357788877554332 21111
Q ss_pred ccCCCceeeeecCCCce-------------------EEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeecee
Q 004475 240 VREGMRSISWRADKPST-------------------LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300 (751)
Q Consensus 240 ~~~~~~~~~~spdG~~~-------------------i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 300 (751)
..+..+.|+|++... ++..+ ..+.+.++++.. +.....+......
T Consensus 186 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~d~~i~~~~~~~--~~~~~~~~~~~~~ 249 (317)
T d1vyhc1 186 --HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS------------RDKTIKMWDVST--GMCLMTLVGHDNW 249 (317)
T ss_dssp --SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE------------TTSEEEEEETTT--TEEEEEEECCSSC
T ss_pred --CCceEEEEeeccccceeeccccceeeeeccCCceeEecc------------CCCEEEEEECCC--CcEEEEEeCCCCC
Confidence 112234444444321 11111 224677777641 2222334444556
Q ss_pred EE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 301 FS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 301 ~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
+. +.|+|+|+.|+.+.. ...|.+.++.++ +...........+.. ++|+|||+.|+..+
T Consensus 250 v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~h~~~V~~------~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 250 VRGVLFHSGGKFILSCAD----DKTLRVWDYKNK--RCMKTLNAHEHFVTS------LDFHKTAPYVVTGS 308 (317)
T ss_dssp EEEEEECSSSSCEEEEET----TTEEEEECCTTS--CCCEEEECCSSCEEE------EEECSSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEEC----CCeEEEEECCCC--cEEEEEcCCCCCEEE------EEEcCCCCEEEEEe
Confidence 66 899999999887652 246777788774 223322222222333 78999999998877
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=7.1e-11 Score=106.76 Aligned_cols=152 Identities=13% Similarity=-0.009 Sum_probs=97.5
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-- 622 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~-- 622 (751)
.+...|.++||.++.+ ...+++...... ....+++.+.++.+.++. ..+++.++||||||.++..++.++
T Consensus 20 ~l~~~l~~~g~~~~~~---~~~~~~~~~~~~---~~~~~~l~~~i~~~~~~~--~~~~v~lvGHSmGG~va~~~~~~~~~ 91 (179)
T d1ispa_ 20 GIKSYLVSQGWSRDKL---YAVDFWDKTGTN---YNNGPVLSRFVQKVLDET--GAKKVDIVAHSMGGANTLYYIKNLDG 91 (179)
T ss_dssp HHHHHHHHTTCCGGGE---EECCCSCTTCCH---HHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHcCCeEEEE---ecCCcccccccc---chhhhhHHHHHHHHHHhc--CCceEEEEeecCcCHHHHHHHHHcCC
Confidence 4566888999987662 333444432222 234455666666665542 346899999999999999999876
Q ss_pred CCceeEEEEccCCCCCCCCccCcccccccchhhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHh
Q 004475 623 PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKG 702 (751)
Q Consensus 623 p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~ 702 (751)
|++++.+|++++........ ... ........|++.++|..|.+|+ +..+ .+
T Consensus 92 ~~~V~~~V~l~~p~~g~~~~-~l~-------------------~~~~~~~~~~~~i~~~~D~~v~--~~~~-----~l-- 142 (179)
T d1ispa_ 92 GNKVANVVTLGGANRLTTGK-ALP-------------------GTDPNQKILYTSIYSSADMIVM--NYLS-----RL-- 142 (179)
T ss_dssp GGTEEEEEEESCCGGGTCSB-CCC-------------------CSCTTCCCEEEEEEETTCSSSC--HHHH-----CC--
T ss_pred chhhCEEEEECCCCCCchhh-hcC-------------------CcccccCceEEEEEecCCcccC--chhh-----cC--
Confidence 57899999988753211000 000 0112246899999999999998 6543 12
Q ss_pred CCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 703 HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 703 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
...+.+.+++.+|...... .++.+.+.+||+
T Consensus 143 --~~~~~~~~~~~~H~~l~~~--~~v~~~i~~~L~ 173 (179)
T d1ispa_ 143 --DGARNVQIHGVGHIGLLYS--SQVNSLIKEGLN 173 (179)
T ss_dssp --BTSEEEEESSCCTGGGGGC--HHHHHHHHHHHT
T ss_pred --CCceEEEECCCCchhhccC--HHHHHHHHHHHh
Confidence 1235678899999754322 356777777775
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.21 E-value=5.9e-10 Score=112.02 Aligned_cols=267 Identities=9% Similarity=0.033 Sum_probs=138.2
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
.+...+|||||++||..+ ..+.|.++++.+++.......... .+..++|+|+|+.|+..+.+....
T Consensus 57 ~I~~l~~s~~~~~l~sgs----------~Dg~v~iWd~~~~~~~~~~~~~~~----~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSAS----------QDGKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEEECTTSSEEEEEE----------TTTEEEEEETTTTEEEEEEECSCS----CEEEEEECTTSSEEEEEETTCCEE
T ss_pred CEEEEEECCCCCEEEEEE----------CCCceeeeecccceeEEEEecccc----cEEeeEeeccceeeeeecccceee
Confidence 588999999999998853 336788889988875443332221 377899999999998876543211
Q ss_pred CCCC-CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC-Cceec-CCCceEEeeeeCCCCc
Q 004475 112 PPKK-TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDF-GTPAVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G-~~~~l-t~~~~~~~~~~SpDG~ 187 (751)
.-.. ................... .......+................. .. ..... .....+....+.+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYL-----SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCE-----EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred cccccccccccccceecccccccc-----cccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence 0000 0000000000000000000 0000000000000000011111222 11 11111 1124556677888887
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~ 267 (751)
.++.... ...+.+||+.+++...... .....+..++|+|||+. ++..+
T Consensus 198 ~~~~~~~-------------d~~v~i~d~~~~~~~~~~~------------~h~~~i~~v~~~p~~~~-l~s~s------ 245 (340)
T d1tbga_ 198 LFVSGAC-------------DASAKLWDVREGMCRQTFT------------GHESDINAICFFPNGNA-FATGS------ 245 (340)
T ss_dssp EEEEEET-------------TTEEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSE-EEEEE------
T ss_pred eeEEeec-------------CceEEEEECCCCcEEEEEe------------CCCCCeEEEEECCCCCE-EEEEe------
Confidence 7765433 2368899998765432211 11233568899999997 55543
Q ss_pred CccccCcccceeeccCCCCCCCCc-eEeE--eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeec
Q 004475 268 ANVEVSPRDIIYTQPAEPAEGEKP-EILH--KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 343 (751)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~-~~l~--~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 343 (751)
..+.++++++. .... ..+. .....+. +.|+|+|+.|+.+.. ...|.+.++.++ +.......
T Consensus 246 ------~d~~i~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~--~~~~~~~~ 310 (340)
T d1tbga_ 246 ------DDATCRLFDLR---ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA--DRAGVLAG 310 (340)
T ss_dssp ------TTSCEEEEETT---TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET----TSCEEEEETTTC--CEEEEECC
T ss_pred ------CCCeEEEEeec---ccccccccccccccCceEEEEECCCCCEEEEEEC----CCEEEEEECCCC--cEEEEEcC
Confidence 23467777774 2121 1111 1233456 899999998877552 245777787764 22332222
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
....+.. ++|+|||++|+..+
T Consensus 311 H~~~V~~------l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 311 HDNRVSC------LGVTDDGMAVATGS 331 (340)
T ss_dssp CSSCEEE------EEECTTSSCEEEEE
T ss_pred CCCCEEE------EEEeCCCCEEEEEc
Confidence 2223333 78999999988777
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.20 E-value=1.2e-11 Score=120.98 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=93.6
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE-ccCC-CCCCCCcc--Ccc----cccccchhhHHHHHhcCcccc
Q 004475 596 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-RSGS-YNKTLTPF--GFQ----TEFRTLWEATNVYIEMSPITH 667 (751)
Q Consensus 596 ~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~-~~~~-~d~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~ 667 (751)
..+|++||+|+|+|+||+||+.++..+|+.|++.+. +++. +.-..... ... .....+....+.+....+...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 458999999999999999999999999999974433 3332 11000000 000 001111112222222333333
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCC--CcEEEEEeCCCCCcCCcccc------------------HHH
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG--ALSRLVLLPFEHHVYAAREN------------------VMH 727 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~~~~------------------~~~ 727 (751)
....+.|+||+||+.|.+|| +.++.+++++|++.+ .+++++..++++|.+..... -.+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vp--p~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fpT~~~g~g~~~c~~~~~pyi~~C~~d 163 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVG--PNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSC--HHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hccCCCCEEEEecCCCCCcC--HHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCCCCCCCcccccccccCChhhhcCCCc
Confidence 33456899999999999999 999999999998764 46899999999998742110 012
Q ss_pred HHHHHHHHHHHHhcC
Q 004475 728 VIWETDRWLQKYCLS 742 (751)
Q Consensus 728 ~~~~~~~fl~~~l~~ 742 (751)
...++++||-.-+..
T Consensus 164 ~a~~iL~~~yg~~~~ 178 (318)
T d2d81a1 164 GAGAALKWIYGSLNA 178 (318)
T ss_dssp HHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhcccCc
Confidence 346778888766653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.17 E-value=1.9e-09 Score=109.61 Aligned_cols=188 Identities=10% Similarity=-0.017 Sum_probs=99.2
Q ss_pred eeEEeecCCCCCCCCccccc--CCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVH--GYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~--~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
+||+..++. .+++...+. .++.....+..++||||+.|+-+. .+....|.++.+++.....+.....
T Consensus 15 ~i~~~~fd~--~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA---------MKKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE---------BTEEEEEEEEETTEEEEEEEEECCS
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe---------CCcEEEEEEeCCCCeEEEeeecCCC
Confidence 799999977 555544332 244444467789999998886653 3456777777665543333211110
Q ss_pred cccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEc
Q 004475 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (751)
....+..+|||+.++............ .......+ ....++.++
T Consensus 84 ----~p~~v~~~~~~~~~~v~~a~~~~~~v~--------~~~~~~~~------------------------~~~~~~~~~ 127 (365)
T d1jofa_ 84 ----HPRANDADTNTRAIFLLAAKQPPYAVY--------ANPFYKFA------------------------GYGNVFSVS 127 (365)
T ss_dssp ----SGGGGCTTSCCEEEEEEECSSTTCCEE--------EEEESSSC------------------------CEEEEEEEC
T ss_pred ----CcEEEEECCCCCEEEEEEecCCCCEEE--------EeEccCCC------------------------CcceeEeee
Confidence 124557899999776654321111000 00000000 113344444
Q ss_pred CCCCceec------CCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC-ceeeeeccCCCCCCCCCc
Q 004475 164 LDGTAKDF------GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVC 236 (751)
Q Consensus 164 ~~G~~~~l------t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~ 236 (751)
.++..... ......+.+.|+|||++|++.... ...+++++.+. +.........
T Consensus 128 ~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g------------~d~v~~~~~~~~g~~~~~~~~~-------- 187 (365)
T d1jofa_ 128 ETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVD-------- 187 (365)
T ss_dssp TTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEE--------
T ss_pred ecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC------------CCEEEEEEccCCCceeecccee--------
Confidence 44422111 112456789999999999987543 23566665542 2222221100
Q ss_pred cCCccCCCceeeeecCCCceEEEEE
Q 004475 237 YNSVREGMRSISWRADKPSTLYWVE 261 (751)
Q Consensus 237 ~~~~~~~~~~~~~spdG~~~i~~~~ 261 (751)
......+.|.+.|+|||++ ++.+.
T Consensus 188 ~~~~g~gPr~i~f~pdg~~-~yv~~ 211 (365)
T d1jofa_ 188 APDPGDHPRWVAMHPTGNY-LYALM 211 (365)
T ss_dssp CSSTTCCEEEEEECTTSSE-EEEEE
T ss_pred ecCCCCceEEEEECCCCce-EEEec
Confidence 0112245789999999997 55543
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.17 E-value=1.7e-10 Score=119.00 Aligned_cols=212 Identities=9% Similarity=-0.035 Sum_probs=129.6
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCC------eEEEEcCC
Q 004475 489 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR------FAVLAGPS 562 (751)
Q Consensus 489 ~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G------~~v~~~~~ 562 (751)
.+|..|+..-..... ...|.||++||-| ..+..|. .....|++.| |.|++
T Consensus 89 i~G~~iHf~h~~~~~------~~~~pLlLlHG~P--------------~s~~~w~-~vi~~La~~g~~~~~~f~VIa--- 144 (394)
T d1qo7a_ 89 IEGLTIHFAALFSER------EDAVPIALLHGWP--------------GSFVEFY-PILQLFREEYTPETLPFHLVV--- 144 (394)
T ss_dssp ETTEEEEEEEECCSC------TTCEEEEEECCSS--------------CCGGGGH-HHHHHHHHHCCTTTCCEEEEE---
T ss_pred ECCEEEEEEEEeccC------CCCCEEEEecccc--------------ccHHHHH-HHHHhhccccCCcccceeeec---
Confidence 378888887665433 1257899999954 2333322 4455777777 99999
Q ss_pred CCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004475 563 IPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 638 (751)
Q Consensus 563 ~~~~g~g~~~~~~----~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~ 638 (751)
++.+|+|.+..+. ........++...++.+ ...+.+++|||+||.++..+++.+|+.+.++++.......
T Consensus 145 PDLpG~G~S~~P~~~~~y~~~~~a~~~~~l~~~l------g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~ 218 (394)
T d1qo7a_ 145 PSLPGYTFSSGPPLDKDFGLMDNARVVDQLMKDL------GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRA 218 (394)
T ss_dssp ECCTTSTTSCCCCSSSCCCHHHHHHHHHHHHHHT------TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCS
T ss_pred ccccccCCCCCCCCCCccCHHHHHHHHHHHHhhc------cCcceEEEEecCchhHHHHHHHHhhccccceeEeeecccc
Confidence 6677888875432 12344444444444433 2357899999999999999999999998888877654321
Q ss_pred CCCccCcccc---c-------------c---------------------------------cch-----hhH------HH
Q 004475 639 TLTPFGFQTE---F-------------R---------------------------------TLW-----EAT------NV 658 (751)
Q Consensus 639 ~~~~~~~~~~---~-------------~---------------------------------~~~-----~~~------~~ 658 (751)
.......... . . ..| ... ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
T d1qo7a_ 219 PPEGPSIESLSAAEKEGIARMEKFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSL 298 (394)
T ss_dssp CSSSCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccccchhhhHHHHHhhhcccccCCHHHHHHHHHH
Confidence 1110000000 0 0 000 000 00
Q ss_pred -------------HHh-cC---------cccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004475 659 -------------YIE-MS---------PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 715 (751)
Q Consensus 659 -------------~~~-~~---------~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 715 (751)
|.. .. ......++++|+++++|.+|...+ +.. +.+.+. ..+++.+++++
T Consensus 299 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~--p~~---~~~~~~---~~~~~~~~~~~ 370 (394)
T d1qo7a_ 299 YWLTESFPRAIHTYRETTPTASAPNGATMLQKELYIHKPFGFSFFPKDLCPV--PRS---WIATTG---NLVFFRDHAEG 370 (394)
T ss_dssp HHHTTCHHHHGGGHHHHCC---------CTTTTTCEEEEEEEEECTBSSSCC--CHH---HHGGGE---EEEEEEECSSC
T ss_pred HhhccccchhHHHHHHHhhcccccchhhhhccCCcccCCeEEEEeCCCcccc--HHH---HHHhcc---CceEEEEcCCc
Confidence 000 00 011123567899999999998765 432 333222 23567889999
Q ss_pred CCcCCccccHHHHHHHHHHHHHHH
Q 004475 716 HHVYAARENVMHVIWETDRWLQKY 739 (751)
Q Consensus 716 ~H~~~~~~~~~~~~~~~~~fl~~~ 739 (751)
||... .+..+.+.+.|.+||++.
T Consensus 371 GHf~~-~E~Pe~~a~~I~~Fl~~v 393 (394)
T d1qo7a_ 371 GHFAA-LERPRELKTDLTAFVEQV 393 (394)
T ss_dssp BSCHH-HHCHHHHHHHHHHHHHHH
T ss_pred CCchH-HhCHHHHHHHHHHHHHHh
Confidence 99865 788899999999999874
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.09 E-value=2.1e-09 Score=106.46 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC----------------Ccc
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL----------------TPF 643 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~----------------~~~ 643 (751)
.+.|..++-..|.++- .-+|+ .++|.||||+.|+..|+++|+++..+|++++...... ..|
T Consensus 115 ti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~ 192 (357)
T d2b61a1 115 VVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNF 192 (357)
T ss_dssp CHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCC
Confidence 4567777776676653 34677 7889999999999999999999999999887521000 000
Q ss_pred -------------Cc---------------------ccc---cccch---hhHHHH------------------------
Q 004475 644 -------------GF---------------------QTE---FRTLW---EATNVY------------------------ 659 (751)
Q Consensus 644 -------------~~---------------------~~~---~~~~~---~~~~~~------------------------ 659 (751)
+. ... ....| ...+.|
T Consensus 193 ~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~ 272 (357)
T d2b61a1 193 NGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRAL 272 (357)
T ss_dssp GGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHh
Confidence 00 000 00000 000111
Q ss_pred HhcCc-------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCC-CCcCCccccHHHHHHH
Q 004475 660 IEMSP-------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE-HHVYAARENVMHVIWE 731 (751)
Q Consensus 660 ~~~~~-------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~H~~~~~~~~~~~~~~ 731 (751)
...++ .+.+.+|++|+|++..+.|...| +++.+++++.|+..++++++++++.. ||.-. ..+..++...
T Consensus 273 ~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFp--p~~~~~~a~~l~~~~~~v~~~~I~S~~GHdaf-L~e~~~~~~~ 349 (357)
T d2b61a1 273 DMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFK--PIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAF-LVDYDQFEKR 349 (357)
T ss_dssp HHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSC--HHHHHHHHHHHHHTTCEEEEEEECCTTGGGHH-HHCHHHHHHH
T ss_pred hhcccccccccHHHHHhhcCCCEEEEEeCCccccC--HHHHHHHHHHHHhcCCCeEEEEECCCCCcccc-CcCHHHHHHH
Confidence 11111 11257899999999999999999 99999999999999999999999875 78643 2335566777
Q ss_pred HHHHHH
Q 004475 732 TDRWLQ 737 (751)
Q Consensus 732 ~~~fl~ 737 (751)
+.+||+
T Consensus 350 I~~fL~ 355 (357)
T d2b61a1 350 IRDGLA 355 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 888876
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.09 E-value=4.6e-08 Score=101.51 Aligned_cols=321 Identities=11% Similarity=0.070 Sum_probs=174.6
Q ss_pred CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc--cccceeeeeEEecCCcEEEEeecCCCCCCCCCCC
Q 004475 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTM 117 (751)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 117 (751)
.+|.+..|....+ ......++......++.+.|.+.... .-...+..+++||||++|+|+...+....
T Consensus 81 ~~g~~y~~~~~~~-----~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~----- 150 (430)
T d1qfma1 81 KKGKRYFYFYNTG-----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDW----- 150 (430)
T ss_dssp EETTEEEEEEECS-----SCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----
T ss_pred EeCCEEEEEEecC-----CCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCch-----
Confidence 4566666654321 13334566665555655554332110 00112346788999999999865433221
Q ss_pred CCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEEec
Q 004475 118 VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (751)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~ 195 (751)
..|+++|+ +|+....+-. .....++|++|++.|+|+...
T Consensus 151 ---------------------------------------~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~ 191 (430)
T d1qfma1 151 ---------------------------------------VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYP 191 (430)
T ss_dssp ---------------------------------------EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECC
T ss_pred ---------------------------------------heeEEeccCcceecccccccccccceEEcCCCCEEEEEEec
Confidence 68999999 7754322211 223578999999999998765
Q ss_pred CCccc---ccccCCCceeEEEEeCCCceee--eeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCcc
Q 004475 196 RPYSY---KVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (751)
Q Consensus 196 ~~~~~---~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~ 270 (751)
..... ..+.......++++.+.+.... .+...... ......+..|+||+++++.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~----------~~~~~~~~~s~d~~~l~i~~~~~------- 254 (430)
T d1qfma1 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE----------PKWMGGAELSDDGRYVLLSIREG------- 254 (430)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC----------TTCEEEEEECTTSCEEEEEEECS-------
T ss_pred cccCcccccccccCCcceEEEEECCCCccccccccccccC----------CceEEeeeccCCcceeeEEeecc-------
Confidence 42111 1111223457888888765432 22221111 01122456799999844443311
Q ss_pred ccCcccceeeccCCCCCCC-----CceEeEe-eceeEEEEEecCCceEEEeeeecccceeEEEecCCCCCC-cceeeeec
Q 004475 271 EVSPRDIIYTQPAEPAEGE-----KPEILHK-LDLRFSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDR 343 (751)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~-----~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~ 343 (751)
......++.+++...... ....+.. ....+.. ...+|..+++.++.......|..+++..... ..+.+...
T Consensus 255 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~ 332 (430)
T d1qfma1 255 -CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE 332 (430)
T ss_dssp -SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC
T ss_pred -CCccEEEEEeeCCCcccccccccceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecc
Confidence 112246777776321111 1122222 2222221 2345667777776665667899998876411 12333322
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceee
Q 004475 344 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 423 (751)
Q Consensus 344 ~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 423 (751)
....+.. -.++..+.+|++...+ .....|+++++++++...+...+.. .+..
T Consensus 333 ~~~~~~~------~~~~~~~~~lvl~~~~------------------~~~~~l~v~~~~~~~~~~~~~~~~~----sv~~ 384 (430)
T d1qfma1 333 HEKDVLE------WVACVRSNFLVLCYLH------------------DVKNTLQLHDLATGALLKIFPLEVG----SVVG 384 (430)
T ss_dssp CSSCEEE------EEEEETTTEEEEEEEE------------------TTEEEEEEEETTTCCEEEEECCCSS----EEEE
T ss_pred cCcceee------eEEEEECCEEEEEEEc------------------CCEeEEEEEECCCCcEEEecCCCCc----eEee
Confidence 1111100 1133344455544422 2345899999998888776544321 1222
Q ss_pred eecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCce
Q 004475 424 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 463 (751)
Q Consensus 424 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~ 463 (751)
.+.++++..+.+..++...|+.+|.+|+.+|+.
T Consensus 385 -------~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 385 -------YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp -------EECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred -------ccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 244567888999999999999999999998864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=6.3e-09 Score=104.10 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=113.2
Q ss_pred cccceeecC--CCCeEEEEEeecccccccCCceeEEEEEcCCCCe-eeccCCCC---ccccceeeeeEEecCCcEEEEee
Q 004475 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD---ICLNAVFGSFVWVNNSTLLIFTI 105 (751)
Q Consensus 32 ~~~~p~~SP--DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~-~~lt~~~~---~~~~~~~~~~~wspDg~~l~~~~ 105 (751)
.+...+||| ||++||..+ ..+.|.+++...++. ..+..... ......+..++|+|||++|+..+
T Consensus 65 ~v~~v~fsP~~~g~~lasgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGD----------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEE----------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEeeCCCCCEEEEEe----------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 578899998 667777642 224555555544331 11110000 00111367889999999998875
Q ss_pred cCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC-ceEEeeeeC
Q 004475 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPS 183 (751)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~-~~~~~~~~S 183 (751)
...... ..++.++ +| ....+..+ ..+..++|+
T Consensus 135 ~~~~~~---------------------------------------------~~~~~~~-~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 135 EGRDNF---------------------------------------------GVFISWD-SGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp CCSSCS---------------------------------------------EEEEETT-TCCEEEECCSCSSCEEEEEEC
T ss_pred ccccce---------------------------------------------EEEEeec-ccccceeeeeccccccccccc
Confidence 421111 2333333 44 34445444 677889999
Q ss_pred CCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeee-eccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
|++++++++... ...+.+|+....+... +... ......+..++|+||+..+++...
T Consensus 169 ~~~~~~~~~~~~------------d~~v~~~d~~~~~~~~~~~~~----------~~~~~~v~~v~~~pd~~~~l~s~~- 225 (325)
T d1pgua1 169 QSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTH----------HKQGSFVRDVEFSPDSGEFVITVG- 225 (325)
T ss_dssp SSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSS----------SCTTCCEEEEEECSTTCCEEEEEE-
T ss_pred ccccceEEEeec------------ccccccccccccccceecccc----------cCCCCccEEeeeccccceeccccc-
Confidence 999987765543 2357788887554322 2111 111233568899999766344332
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEe---cCCceEEEeeeecccceeEEEecCCCC
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC---DDSLALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s---pdg~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
..+.|.++++.. +.....+......+. ..|+ |||++|+..+. ...|.+.++.++
T Consensus 226 -----------~d~~i~iwd~~~--~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~----D~~i~iwd~~~~ 283 (325)
T d1pgua1 226 -----------SDRKISCFDGKS--GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA----DATIRVWDVTTS 283 (325)
T ss_dssp -----------TTCCEEEEETTT--CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET----TSEEEEEETTTT
T ss_pred -----------cccceeeeeecc--ccccccccccccccccceeeeeccCCCEEEEEeC----CCeEEEEECCCC
Confidence 235688888741 222233333333333 3444 78998876552 234666677664
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.03 E-value=6.9e-09 Score=102.83 Aligned_cols=152 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC----------------Ccc
Q 004475 581 LVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL----------------TPF 643 (751)
Q Consensus 581 ~~~d~~~~v~~l~~~~~id~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~d~~~----------------~~~ 643 (751)
.+.|+.++...|.+.-.| +++. ++|.||||+.|+..|..+|+.++.+|++++...... ..|
T Consensus 122 t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~ 199 (362)
T d2pl5a1 122 SIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNW 199 (362)
T ss_dssp CHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcCCcc
Confidence 356666666666665334 4555 889999999999999999999999999887522000 000
Q ss_pred --C-ccc---cc-----------------------------c----c-----ch-----------hh-------HHHHHh
Q 004475 644 --G-FQT---EF-----------------------------R----T-----LW-----------EA-------TNVYIE 661 (751)
Q Consensus 644 --~-~~~---~~-----------------------------~----~-----~~-----------~~-------~~~~~~ 661 (751)
+ +.. .. . . .| .+ .+.+..
T Consensus 200 ~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~ 279 (362)
T d2pl5a1 200 KNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDH 279 (362)
T ss_dssp GGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHH
T ss_pred ccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhhhc
Confidence 0 000 00 0 0 00 00 001111
Q ss_pred cCc------ccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCccccHHHHHHHHHH
Q 004475 662 MSP------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDR 734 (751)
Q Consensus 662 ~~~------~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~ 734 (751)
.+. .+.+.+|++|+|+|..+.|...| +++.+++++.|+.++.+++++.++. .||.-. ..+..++...+.+
T Consensus 280 ~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFp--p~~~~~~a~~l~~a~~~v~~~eI~S~~GHdaF-L~e~~~~~~~I~~ 356 (362)
T d2pl5a1 280 YSLGKGKELTAALSNATCRFLVVSYSSDWLYP--PAQSREIVKSLEAADKRVFYVELQSGEGHDSF-LLKNPKQIEILKG 356 (362)
T ss_dssp CBCCSHHHHHHHHTTCCSEEEEEEETTCCSSC--HHHHHHHHHHHHHTTCCEEEEEECCCBSSGGG-GSCCHHHHHHHHH
T ss_pred ccccccccHHHHHhhCCCCEEEEEeCcccCcC--HHHHHHHHHHHHhCCCCeEEEEeCCCCCcchh-ccCHHHHHHHHHH
Confidence 111 11267899999999999999999 9999999999999999999987764 578643 3345567778888
Q ss_pred HHH
Q 004475 735 WLQ 737 (751)
Q Consensus 735 fl~ 737 (751)
||+
T Consensus 357 FL~ 359 (362)
T d2pl5a1 357 FLE 359 (362)
T ss_dssp HHH
T ss_pred HHc
Confidence 885
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.01 E-value=3.8e-10 Score=110.24 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=97.4
Q ss_pred hCCeEEEEcCCCCCCCCCCCCCC-----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----
Q 004475 552 ARRFAVLAGPSIPIIGEGDKLPN-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---- 622 (751)
Q Consensus 552 ~~G~~v~~~~~~~~~g~g~~~~~-----~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---- 622 (751)
..++.|++ .+..|+|.+... ....+.+..++.++|.... ...+++|+||||||.+|+.+|.+.
T Consensus 86 ~~~~~V~a---l~~pG~~~~~~~~~~~~~~s~~~~a~~~~~~i~~~~-----~~~P~vL~GhS~GG~vA~e~A~~l~~~~ 157 (283)
T d2h7xa1 86 QEERDFLA---VPLPGYGTGTGTGTALLPADLDTALDAQARAILRAA-----GDAPVVLLGHSGGALLAHELAFRLERAH 157 (283)
T ss_dssp TTTCCEEE---ECCTTCCBC---CBCCEESSHHHHHHHHHHHHHHHH-----TTSCEEEEEETHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEE---EeCCCCCCCCCCccccccCCHHHHHHHHHHHHHHhc-----CCCceEEEEeccchHHHHHHHHhhHHHc
Confidence 34688888 455566544221 1234455544444333221 235799999999999999998754
Q ss_pred CCceeEEEEccCCCCCCCCccCccc---------ccccchhh-----HHHHHhcCcccccCCCCCCEEEEEcCCCCCCCC
Q 004475 623 PHLFCCGIARSGSYNKTLTPFGFQT---------EFRTLWEA-----TNVYIEMSPITHANKIKKPILIIHGEVDDKVGL 688 (751)
Q Consensus 623 p~~~~~~v~~~~~~d~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~ 688 (751)
+..+.+++++.+............. ........ ...+...........+++|+++++|++|..++
T Consensus 158 g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~- 236 (283)
T d2h7xa1 158 GAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDW- 236 (283)
T ss_dssp SCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCC-
T ss_pred CCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCC-
Confidence 4568888888764321110000000 00000000 00111111112245688999999999999887
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHHH
Q 004475 689 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 738 (751)
......+.+ .....++++.+|+ +|..+..+....+.+.|.+||+.
T Consensus 237 -~~~~~~w~~---~~~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 237 -QEERGDWRA---HWDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp -CGGGCCCSC---CCSSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH---hCCCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 544332221 1233568899997 68654456677888899999975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.00 E-value=3.3e-08 Score=98.80 Aligned_cols=121 Identities=6% Similarity=0.058 Sum_probs=71.8
Q ss_pred cceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc--cccccCCC
Q 004475 276 DIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDP 352 (751)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 352 (751)
+.+.++++.. +.....+......+. ++|+|+|+.|+.++. ...+.+.+.... ......... ...+.
T Consensus 206 ~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~~--~~~~~~~~~~~~~~i~--- 274 (340)
T d1tbga_ 206 ASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRAD--QELMTYSHDNIICGIT--- 274 (340)
T ss_dssp TEEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTT--EEEEEECCTTCCSCEE---
T ss_pred ceEEEEECCC--CcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeeccc--ccccccccccccCceE---
Confidence 5678888741 222233334455667 899999998887652 235666666653 212221111 11111
Q ss_pred CCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCccee
Q 004475 353 GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED 432 (751)
Q Consensus 353 ~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (751)
.++|+|||+.|+..+.+ ..|++||+.+++....+..... .+.. ++
T Consensus 275 ---~~~~s~~~~~l~~g~~d---------------------g~i~iwd~~~~~~~~~~~~H~~----~V~~-------l~ 319 (340)
T d1tbga_ 275 ---SVSFSKSGRLLLAGYDD---------------------FNCNVWDALKADRAGVLAGHDN----RVSC-------LG 319 (340)
T ss_dssp ---EEEECSSSCEEEEEETT---------------------SCEEEEETTTCCEEEEECCCSS----CEEE-------EE
T ss_pred ---EEEECCCCCEEEEEECC---------------------CEEEEEECCCCcEEEEEcCCCC----CEEE-------EE
Confidence 17899999998887722 2688999988877555443211 1222 58
Q ss_pred eccCCCEEEE
Q 004475 433 INLNQLKILT 442 (751)
Q Consensus 433 ~s~dg~~l~~ 442 (751)
|+||++.|+-
T Consensus 320 ~s~d~~~l~s 329 (340)
T d1tbga_ 320 VTDDGMAVAT 329 (340)
T ss_dssp ECTTSSCEEE
T ss_pred EeCCCCEEEE
Confidence 9999987764
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.00 E-value=4.9e-10 Score=106.05 Aligned_cols=185 Identities=11% Similarity=0.004 Sum_probs=98.4
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 590 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~ 590 (751)
..|+||++||.+ ++...| ..++..| .+|.|++ ++..|.+. .++++.+.++
T Consensus 16 ~~~~l~~lhg~~-----------g~~~~~----~~la~~L--~~~~v~~---~~~~g~~~----------~a~~~~~~i~ 65 (230)
T d1jmkc_ 16 QEQIIFAFPPVL-----------GYGLMY----QNLSSRL--PSYKLCA---FDFIEEED----------RLDRYADLIQ 65 (230)
T ss_dssp CSEEEEEECCTT-----------CCGGGG----HHHHHHC--TTEEEEE---ECCCCSTT----------HHHHHHHHHH
T ss_pred CCCeEEEEcCCC-----------CCHHHH----HHHHHHC--CCCEEec---cCcCCHHH----------HHHHHHHHHH
Confidence 368999999964 111222 1334444 4798988 44555432 2344444443
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc---eeEEEEccCCCCCCCCccCc-cc--------------ccccc
Q 004475 591 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL---FCCGIARSGSYNKTLTPFGF-QT--------------EFRTL 652 (751)
Q Consensus 591 ~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~---~~~~v~~~~~~d~~~~~~~~-~~--------------~~~~~ 652 (751)
+.. ...++.|+||||||.+|+.+|.+.|++ +..++...+........... .. .....
T Consensus 66 ---~~~--~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (230)
T d1jmkc_ 66 ---KLQ--PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNS 140 (230)
T ss_dssp ---HHC--CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGS
T ss_pred ---HhC--CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 322 235799999999999999999876543 44444444321111000000 00 00000
Q ss_pred hhhH--------HHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCccc-
Q 004475 653 WEAT--------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE- 723 (751)
Q Consensus 653 ~~~~--------~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~- 723 (751)
.... ..+..........++++|+++++|++|..++ ... .... ......++++.+++ +|..+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~--~~~-~~w~---~~~~~~~~~~~i~g-~H~~ml~~~ 213 (230)
T d1jmkc_ 141 EAVKHGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIP--EWL-ASWE---EATTGAYRMKRGFG-THAEMLQGE 213 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCC--TTE-ECSG---GGBSSCEEEEECSS-CGGGTTSHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccc--hhH-HHHH---HhccCCcEEEEEcC-CChhhcCCc
Confidence 0000 0011111223345688999999999999886 332 1111 12234678999986 89865432
Q ss_pred cHHHHHHHHHHHHH
Q 004475 724 NVMHVIWETDRWLQ 737 (751)
Q Consensus 724 ~~~~~~~~~~~fl~ 737 (751)
...+..+.|.+||+
T Consensus 214 ~~~~va~~I~~~L~ 227 (230)
T d1jmkc_ 214 TLDRNAGILLEFLN 227 (230)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHh
Confidence 23455666666664
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.84 E-value=1.1e-08 Score=101.22 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=62.2
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.....|.++||.|++ .+.+|+|.+........++.+++.+.++.+ +.++|.++||||||.++..++.++|+
T Consensus 32 ~~~~~L~~~G~~V~~---~~~~g~g~s~~~~~~~~~l~~~i~~~~~~~------~~~~v~lvGhS~GG~~~~~~~~~~p~ 102 (319)
T d1cvla_ 32 GIQSDLQSHGAKVYV---ANLSGFQSDDGPNGRGEQLLAYVKQVLAAT------GATKVNLIGHSQGGLTSRYVAAVAPQ 102 (319)
T ss_dssp THHHHHHHTTCCEEE---CCCBCSSCTTSTTSHHHHHHHHHHHHHHHH------CCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHCCCEEEE---ecCCCCCCCCCCcccHHHHHHHHHHHHHHh------CCCCEEEEeccccHHHHHHHHHHCcc
Confidence 456788999999999 556677766554444444444444443332 34789999999999999999999999
Q ss_pred ceeEEEEccCCC
Q 004475 625 LFCCGIARSGSY 636 (751)
Q Consensus 625 ~~~~~v~~~~~~ 636 (751)
+++.+|+++++.
T Consensus 103 ~v~~vv~i~~p~ 114 (319)
T d1cvla_ 103 LVASVTTIGTPH 114 (319)
T ss_dssp GEEEEEEESCCT
T ss_pred ccceEEEECCCC
Confidence 999999988763
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=4.6e-07 Score=89.86 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=36.3
Q ss_pred cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCe--eeccCCCCccccceeeeeEEecCCcEEEEe
Q 004475 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 32 ~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 104 (751)
.+...+|||||++||..+. + +.|.+++++++.. ..+..... ...+..++|+|++..++++
T Consensus 13 ~I~~l~fsp~~~~L~s~s~--------D--g~v~iwd~~~~~~~~~~~~~~~h---~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSW--------D--GSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET--------T--SEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEE
T ss_pred CEEEEEEeCCCCEEEEEEC--------C--CeEEEEEccCCCcceEEEEecCC---CCCEEEEEEeCCCCCEEEE
Confidence 5889999999999998642 3 4555555544332 22211110 1137789999986654444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.82 E-value=4e-08 Score=99.62 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=68.7
Q ss_pred ecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCC
Q 004475 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTM 117 (751)
Q Consensus 38 ~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 117 (751)
.+||||+|+. .. ....+|.++|+++++..++...+... +...++++|||+++++.........
T Consensus 79 gtpDGr~lfV-~d--------~~~~rVavIDl~t~k~~~ii~iP~g~---gphgi~~spdg~t~YV~~~~~~~v~----- 141 (441)
T d1qnia2 79 GRYDGKYLFI-ND--------KANTRVARIRLDIMKTDKITHIPNVQ---AIHGLRLQKVPKTNYVFCNAEFVIP----- 141 (441)
T ss_dssp TEEEEEEEEE-EE--------TTTTEEEEEETTTTEEEEEEECTTCC---CEEEEEECCSSBCCEEEEEECSCEE-----
T ss_pred ccCCCCEEEE-Ec--------CCCCEEEEEECCCCcEeeEEecCCCC---CccceEEeccCCEEEEEeccCCccc-----
Confidence 4799999844 33 55689999999999877765443211 3567899999997766533211110
Q ss_pred CCCCCceeeccccccccchhhhhccCCccchhhhhhh-eeeEEEEEcC-CCC-ceecCCCceEEeeeeCCCCceEEEEEe
Q 004475 118 VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSM 194 (751)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~G~-~~~lt~~~~~~~~~~SpDG~~i~~~~~ 194 (751)
.+.++..+... ....+..+|. +.+ ..++.-......+.++|||+++++++.
T Consensus 142 --------------------------~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 142 --------------------------QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp --------------------------SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred --------------------------ccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence 00011111101 1133445666 332 234433355678999999999998876
Q ss_pred cC
Q 004475 195 HR 196 (751)
Q Consensus 195 ~~ 196 (751)
+.
T Consensus 196 ns 197 (441)
T d1qnia2 196 NS 197 (441)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.78 E-value=1.7e-06 Score=85.31 Aligned_cols=244 Identities=8% Similarity=0.017 Sum_probs=127.1
Q ss_pred eEEEEEcCCC-Ccee-cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDG-TAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|++++.+| +... +... .....++++|||+.++ ..... ......+...+..++....+......
T Consensus 61 g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~v-a~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~--- 128 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFV-CYLGD--------FKSTGGIFAATENGDNLQDIIEDLST--- 128 (319)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEE-EECTT--------SSSCCEEEEECTTSCSCEEEECSSSS---
T ss_pred CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEE-EecCC--------CccceeEEEEcCCCceeeeeccCCCc---
Confidence 5789999865 3332 3333 5567899999997544 33221 01124567777777655544322111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceE
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLAL 312 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l 312 (751)
......+.+.|||+ +++..... ......+.+++++.+ ++..+.+...-.... ++|+||++.|
T Consensus 129 -------~~~~nd~~~d~~G~--l~vtd~~~-----~~~~~~g~v~~~~~d---g~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 129 -------AYCIDDMVFDSKGG--FYFTDFRG-----YSTNPLGGVYYVSPD---FRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp -------CCCEEEEEECTTSC--EEEEECCC-----BTTBCCEEEEEECTT---SCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred -------ccCCcceeEEeccc--eeeccccc-----ccccCcceeEEEecc---cceeEEEeeccceeeeeeeccccceE
Confidence 11234689999996 56654211 112234578888875 555555544333334 8999999988
Q ss_pred EEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCC
Q 004475 313 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 392 (751)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (751)
+++. ....+|++++++.......................--+++.+||+ |++... .
T Consensus 192 yvad---~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~--------------------~ 247 (319)
T d2dg1a1 192 WVTE---TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY--------------------G 247 (319)
T ss_dssp EEEE---GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE--------------------T
T ss_pred EEec---ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc--------------------C
Confidence 7765 234578888775431111111100000000000000155667775 333331 1
Q ss_pred CceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCC--CCCeEEEEEcC
Q 004475 393 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT--EITQYHILSWP 459 (751)
Q Consensus 393 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~~~~l~~~~~~ 459 (751)
...|.++|.+ |+....+..+.. . .........+++.+++..++.+..... ..+.||.++..
T Consensus 248 ~g~V~~~~p~-G~~l~~i~~P~~-~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 248 QGRVLVFNKR-GYPIGQILIPGR-D----EGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp TTEEEEECTT-SCEEEEEECTTG-G----GTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCEEEEECCC-CcEEEEEeCCCc-C----CCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 2378888874 554433333221 0 000011223677888888877765433 33458888764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.78 E-value=9.8e-07 Score=91.22 Aligned_cols=282 Identities=13% Similarity=0.039 Sum_probs=145.2
Q ss_pred cceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCC
Q 004475 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (751)
Q Consensus 34 ~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 113 (751)
...++||||++|||.... .++....|+++|+++|+....+-... ....++|++|++.|+|+.........
T Consensus 128 ~~~~~Spd~~~la~s~d~-----~G~e~~~l~v~Dl~tg~~~~~~i~~~-----~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSA-----SGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEECTTSSEEEEEEEE-----TTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cceEecCCCCEEEEEecc-----ccCchheeEEeccCcceecccccccc-----cccceEEcCCCCEEEEEEeccccCcc
Confidence 356899999999998753 23566899999999998554321110 12567999999999998654322210
Q ss_pred CCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC--CceecCCC----ceEEeeeeCCCC
Q 004475 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP----AVYTAVEPSPDQ 186 (751)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G--~~~~lt~~----~~~~~~~~SpDG 186 (751)
..... ...+..++|+..+ +. +.+.+-.. ..+.....|+||
T Consensus 198 ~~~~~---------------------------------~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~ 244 (430)
T d1qfma1 198 DGTET---------------------------------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244 (430)
T ss_dssp SSSCC---------------------------------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred ccccc---------------------------------ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc
Confidence 00000 0001146777777 44 22233221 345577889999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
+++++....... ....++..++.............. .+......... ....+|.. +++.+..
T Consensus 245 ~~l~i~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~-~~~~Tn~--- 306 (430)
T d1qfma1 245 RYVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKWV-----KLIDNFEGEYD-YVTNEGTV-FTFKTNR--- 306 (430)
T ss_dssp CEEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCCE-----EEECSSSSCEE-EEEEETTE-EEEEECT---
T ss_pred ceeeEEeeccCC--------ccEEEEEeeCCCccccccccccee-----EeecccccceE-EEecCCce-eecccCc---
Confidence 999886654221 124577777653221110000000 00000001111 12335555 3443311
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeE-eeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecc
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 344 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 344 (751)
...+..|+.++++.......+.+. ..+.... -..+..+.+|+.... .....+|.++++.++ ....+....
T Consensus 307 -----~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~-~~~~~~l~v~~~~~~--~~~~~~~~~ 378 (430)
T d1qfma1 307 -----HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATG--ALLKIFPLE 378 (430)
T ss_dssp -----TCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTC--CEEEEECCC
T ss_pred -----ccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE-cCCEeEEEEEECCCC--cEEEecCCC
Confidence 123467888887532222334443 3344343 344555566665543 345578999998885 333343222
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 345 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 345 ~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
...+.. ...+++...+.|... + -.....++.+|+++|+.+
T Consensus 379 ~~sv~~------~~~~~~~~~~~~~~s--------------s---~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 379 VGSVVG------YSGQKKDTEIFYQFT--------------S---FLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp SSEEEE------EECCTTCSEEEEEEE--------------C---SSCCCEEEEEETTSSSCC
T ss_pred CceEee------ccCCCCCCEEEEEEc--------------C---CCCCCeEEEEECCCCCcc
Confidence 211111 223344444544431 1 134568999999998764
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.76 E-value=5.8e-08 Score=96.63 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=49.4
Q ss_pred cCCCCCCEEEEEcCCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCccccHHHHHHHHHHHHH
Q 004475 668 ANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 668 ~~~~~~P~li~~G~~D~~vp~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
+.+|++|+|++..+.|.+.| +++.+++.+.++ ..++.+++ ..||.-. .-+.+.+...+.+||+
T Consensus 312 L~~I~a~~LvI~~~sD~lFP--p~~~~e~a~~l~----~a~~~~I~S~~GHDaF-L~e~~~~~~~I~~FL~ 375 (376)
T d2vata1 312 LAMITQPALIICARSDGLYS--FDEHVEMGRSIP----NSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLD 375 (376)
T ss_dssp HTTCCSCEEEEECTTCSSSC--HHHHHHHHHHST----TEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHT
T ss_pred HhhCCCCEEEEEeCcccCcC--HHHHHHHHHhcC----CCeEEEECCCCCcccc-ccCHHHHHHHHHHHHc
Confidence 67899999999999999999 999999888875 45788887 5578632 2335667777888875
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.76 E-value=1.8e-08 Score=97.88 Aligned_cols=83 Identities=10% Similarity=-0.106 Sum_probs=63.9
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP- 623 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p- 623 (751)
.+...|+++||.|+.++ +.|+|.. ......+++...|+++.+... .+||.|+||||||.++.+++.++|
T Consensus 51 ~~~~~L~~~Gy~v~~~d---~~g~g~~-----d~~~sae~la~~i~~v~~~~g--~~kV~lVGhS~GG~~a~~~l~~~p~ 120 (317)
T d1tcaa_ 51 NWIPLSTQLGYTPCWIS---PPPFMLN-----DTQVNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPS 120 (317)
T ss_dssp THHHHHHTTTCEEEEEC---CTTTTCS-----CHHHHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCeEEEec---CCCCCCC-----chHhHHHHHHHHHHHHHHhcc--CCceEEEEeCchHHHHHHHHHHCCC
Confidence 45678899999999844 4454432 234556778888999887643 368999999999999999999887
Q ss_pred --CceeEEEEccCCCC
Q 004475 624 --HLFCCGIARSGSYN 637 (751)
Q Consensus 624 --~~~~~~v~~~~~~d 637 (751)
+++..+|.+++.+.
T Consensus 121 ~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 121 IRSKVDRLMAFAPDYK 136 (317)
T ss_dssp GTTTEEEEEEESCCTT
T ss_pred cchheeEEEEeCCCCC
Confidence 46899999998654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=2.3e-06 Score=85.17 Aligned_cols=283 Identities=9% Similarity=0.000 Sum_probs=146.4
Q ss_pred eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCC
Q 004475 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (751)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 116 (751)
.+++||++||..+ ..+.|.++|+.+++......+... .+..++|+|++ .|+..+.+
T Consensus 18 c~~~~~~~l~tgs----------~Dg~i~vWd~~~~~~~~~l~~H~~----~V~~l~~s~~~-~l~s~s~D--------- 73 (355)
T d1nexb2 18 CLQFEDNYVITGA----------DDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAHGG-ILVSGSTD--------- 73 (355)
T ss_dssp EEEEETTEEEEEE----------TTTEEEEEETTTTEEEEEEECCSS----CEEEEEEETTT-EEEEEETT---------
T ss_pred EEEECCCEEEEEe----------CCCeEEEEECCCCcEEEEEECCCC----CEEEEEEcCCC-EEEEEecc---------
Confidence 5888999888743 336788889988875443332221 47889999976 56555332
Q ss_pred CCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCc-eecCCC---ceEEeeeeCCCCceEEE
Q 004475 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP---AVYTAVEPSPDQKYVLI 191 (751)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~-~~lt~~---~~~~~~~~SpDG~~i~~ 191 (751)
..|.+++. .++. ...... .......++++++.++.
T Consensus 74 ----------------------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (355)
T d1nexb2 74 ----------------------------------------RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113 (355)
T ss_dssp ----------------------------------------CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE
T ss_pred ----------------------------------------cccccccccccccccccccccccccccccccccccceeee
Confidence 34555666 3322 112111 33456778899998887
Q ss_pred EEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC----CC----CccCCc-cCCCceeeeecCCCceEEEEEe
Q 004475 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED----IP----VCYNSV-REGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~----~~----~~~~~~-~~~~~~~~~spdG~~~i~~~~~ 262 (751)
...+ ..+.+|++.+.............. .+ ...... .....-..+.++|+. ++...
T Consensus 114 ~~~d-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~- 178 (355)
T d1nexb2 114 GSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI-VVSGS- 178 (355)
T ss_dssp EETT-------------SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE-EEEEE-
T ss_pred ecCC-------------CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccce-eeeec-
Confidence 6543 357788887553221111000000 00 000000 001112355667765 44332
Q ss_pred ccCCCCccccCcccceeeccCCCCCCCC-ceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceee
Q 004475 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 340 (751)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 340 (751)
....+.++++. ... ............ ..|+|+++.++.... ...|.+.+..++ .....
T Consensus 179 -----------~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~--~~~~~ 238 (355)
T d1nexb2 179 -----------YDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASM----DTTIRIWDLENG--ELMYT 238 (355)
T ss_dssp -----------TTSCEEEEETT---TTEEEEEECCCSSCEEEEEEETTTTEEEEEET----TSCEEEEETTTC--CEEEE
T ss_pred -----------ccceeeeeecc---cccceeeeeccccccccccccccceeeecccc----cceEEeeecccc--ccccc
Confidence 22467777764 222 222223344445 889999998887652 235667777664 22222
Q ss_pred eecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhc
Q 004475 341 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 420 (751)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 420 (751)
.......+ .+.+.+++.|+..+.+ ..|++||+.++..........
T Consensus 239 ~~~h~~~v--------~~~~~~~~~l~~~~~d---------------------g~i~iwd~~~~~~~~~~~~~~------ 283 (355)
T d1nexb2 239 LQGHTALV--------GLLRLSDKFLVSAAAD---------------------GSIRGWDANDYSRKFSYHHTN------ 283 (355)
T ss_dssp ECCCSSCC--------CEEEECSSEEEEECTT---------------------SEEEEEETTTCCEEEEEECTT------
T ss_pred cccccccc--------cccccccceeeeeecc---------------------cccccccccccceecccccCC------
Confidence 22211111 2234456677766622 378899998765433222211
Q ss_pred eeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCcee
Q 004475 421 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 464 (751)
Q Consensus 421 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~ 464 (751)
+.. ...++++++.++ +.. -..|.++|+.+|+..
T Consensus 284 ~~~------~~~~~~~~~~l~-~g~----d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 284 LSA------ITTFYVSDNILV-SGS----ENQFNIYNLRSGKLV 316 (355)
T ss_dssp CCC------CCEEEECSSEEE-EEE----TTEEEEEETTTCCBC
T ss_pred ceE------EEEEcCCCCEEE-EEe----CCEEEEEECCCCCEE
Confidence 111 124566666444 432 246999999988753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.75 E-value=2e-06 Score=84.16 Aligned_cols=246 Identities=13% Similarity=0.134 Sum_probs=130.0
Q ss_pred CcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCc
Q 004475 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (751)
Q Consensus 20 ~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~ 99 (751)
+.+.++.+|.+.....++++|||+ |+++. .....||.++.++ +.+.+..... ....++|+|||+
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~---------~~~~~I~~i~p~g-~~~~~~~~~~-----~~~gla~~~dG~ 80 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTN---------HEVGEIVSITPDG-NQQIHATVEG-----KVSGLAFTSNGD 80 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEE---------TTTTEEEEECTTC-CEEEEEECSS-----EEEEEEECTTSC
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEe---------CCCCEEEEEeCCC-CEEEEEcCCC-----CcceEEEcCCCC
Confidence 344456667766677899999997 54543 3457899999764 4555544443 357889999998
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC---CCCceecCC---
Q 004475 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGT--- 173 (751)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~G~~~~lt~--- 173 (751)
. ++..... ..++.++. ++....+..
T Consensus 81 l-~v~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T d2p4oa1 81 L-VATGWNA------------------------------------------------DSIPVVSLVKSDGTVETLLTLPD 111 (302)
T ss_dssp E-EEEEECT------------------------------------------------TSCEEEEEECTTSCEEEEEECTT
T ss_pred e-EEEecCC------------------------------------------------ceEEEEEecccccceeeccccCC
Confidence 4 4432211 12233332 344443322
Q ss_pred CceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 174 ~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
......+++.+||+. ++.... ...++.++..++........+... +............+ ++|+
T Consensus 112 ~~~~n~i~~~~~g~~-~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ngi--~~~~ 174 (302)
T d2p4oa1 112 AIFLNGITPLSDTQY-LTADSY------------RGAIWLIDVVQPSGSIWLEHPMLA--RSNSESVFPAANGL--KRFG 174 (302)
T ss_dssp CSCEEEEEESSSSEE-EEEETT------------TTEEEEEETTTTEEEEEEECGGGS--CSSTTCCSCSEEEE--EEET
T ss_pred ccccceeEEccCCCE-Eeeccc------------cccceeeeccCCcceeEecCCccc--eeeccCcccccccc--cccC
Confidence 245668889999964 443222 346788888776544332221000 00000111112233 4456
Q ss_pred CceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
.+ ++++.. ....|+.++.+.................. +++++||+ |+++.. ...+|++++.++
T Consensus 175 ~~-l~~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~---~~~~V~~i~p~G 238 (302)
T d2p4oa1 175 NF-LYVSNT-----------EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATH---IYNSVVRIAPDR 238 (302)
T ss_dssp TE-EEEEET-----------TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECB---TTCCEEEECTTC
T ss_pred Cc-eeeecC-----------CCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEc---CCCcEEEECCCC
Confidence 66 666541 23578888875211111111222222233 89999998 554442 235799998877
Q ss_pred CCCcceeeeecccccccCCCCCCCeee---CCCCCEEEEee
Q 004475 333 KDVAPRVLFDRVFENVYSDPGSPMMTR---TSTGTNVIAKI 370 (751)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---spDG~~l~~~~ 370 (751)
+ ...+...... .. +.-..+| ++|++.|++..
T Consensus 239 ~---~~~~~~~~~~-~~---~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 239 S---TTIIAQAEQG-VI---GSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp C---EEEEECGGGT-CT---TEEEEEECCSTTTTTEEEEEE
T ss_pred C---EEEEEecCCC-CC---CceEEEEcCCCCCCCEEEEEC
Confidence 3 2223221111 00 0111567 78999888776
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.68 E-value=3.5e-06 Score=83.04 Aligned_cols=239 Identities=11% Similarity=0.034 Sum_probs=131.8
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeecc-CCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
...|+|.+||+ |+|+. .....|+.+++++++..... .... ....++++|||+.++......+
T Consensus 42 lEG~~~D~~G~-Ly~~D---------~~~g~I~ri~p~g~~~~~~~~~~~~-----~p~gla~~~dG~l~va~~~~~~-- 104 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLD---------VFEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFK-- 104 (319)
T ss_dssp EEEEEECTTSC-EEEEE---------TTTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSS--
T ss_pred cEeCEECCCCC-EEEEE---------CCCCEEEEEECCCCeEEEEEeCCCC-----CeeEEEECCCCCEEEEecCCCc--
Confidence 35789999996 77753 34478999998887654432 2222 2467899999975443211100
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCCC----ceEEeeeeCCCC
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPSPDQ 186 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~~----~~~~~~~~SpDG 186 (751)
....++.++.++ ....+... ....++++.|||
T Consensus 105 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G 141 (319)
T d2dg1a1 105 -------------------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG 141 (319)
T ss_dssp -------------------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred -------------------------------------------cceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc
Confidence 114677777744 44333222 345578999999
Q ss_pred ceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCC
Q 004475 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (751)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~ 266 (751)
+ |+++..... .......+++++.+++..+.+...- .....++|+|||+. |+++..
T Consensus 142 ~-l~vtd~~~~------~~~~~g~v~~~~~dg~~~~~~~~~~-------------~~pnGia~s~dg~~-lyvad~---- 196 (319)
T d2dg1a1 142 G-FYFTDFRGY------STNPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKV-LWVTET---- 196 (319)
T ss_dssp C-EEEEECCCB------TTBCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSE-EEEEEG----
T ss_pred c-eeecccccc------cccCcceeEEEecccceeEEEeecc-------------ceeeeeeeccccce-EEEecc----
Confidence 6 666643321 1111356889999887665542210 12347899999998 777652
Q ss_pred CCccccCcccceeeccCCCCCCCCceEeEe----e---ceeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcce
Q 004475 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHK----L---DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 338 (751)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~----~---~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 338 (751)
..++|+.++++ .++........ . ..... +++.++|+ |+.+. . ....|++++.++. ...
T Consensus 197 -------~~~~I~~~d~~-~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~-~--~~g~V~~~~p~G~--~l~ 262 (319)
T d2dg1a1 197 -------TANRLHRIALE-DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAM-Y--GQGRVLVFNKRGY--PIG 262 (319)
T ss_dssp -------GGTEEEEEEEC-TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEE-E--TTTEEEEECTTSC--EEE
T ss_pred -------cCCceEEEEEc-CCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEE-c--CCCEEEEECCCCc--EEE
Confidence 23578888874 22222211111 0 11123 67788887 43333 1 2358999998763 111
Q ss_pred eeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 339 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
.+ ...............++|.+++..++..+.
T Consensus 263 ~i-~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 263 QI-LIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EE-ECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EE-eCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 12 111110000001111668888877776663
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.67 E-value=6.5e-06 Score=80.69 Aligned_cols=234 Identities=10% Similarity=0.084 Sum_probs=125.3
Q ss_pred eEEEEEcC-CCCceecCCC------ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCC
Q 004475 157 AQLVLGSL-DGTAKDFGTP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (751)
.+|+++++ +++...+..+ .....+.+++||+.|++... ...+.+++.+++....+.....
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------------~~~i~~~~~~g~~~~~~~~~~~ 112 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------------RLGLLVVQTDGTFEEIAKKDSE 112 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------------TTEEEEEETTSCEEECCSBCTT
T ss_pred CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------------CCeEEEEeCCCcEEEEEecccc
Confidence 57999999 4544433222 22457899999998887632 2247888998875544322111
Q ss_pred CCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCC----CccccCcccceeeccCCCCCCCCceEeEeeceeEE-EE
Q 004475 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD----ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VS 304 (751)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~ 304 (751)
..+ + ..+..+.+.|||+ |+++....... ........+.||+++.+ + ....+...-..-. ++
T Consensus 113 --g~~--~----~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d---g-~~~~~~~~~~~pNGi~ 178 (314)
T d1pjxa_ 113 --GRR--M----QGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---G-QMIQVDTAFQFPNGIA 178 (314)
T ss_dssp --SCB--C----BCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---S-CEEEEEEEESSEEEEE
T ss_pred --ccc--c----CCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEeec---C-ceeEeeCCcceeeeeE
Confidence 000 0 1234689999996 67764321110 01111233578888875 4 3333333222223 78
Q ss_pred EecCCc----eEEEeeeecccceeEEEecCCCCCCcc--eee-eecccccccCCCCCC-CeeeCCCCCEEEEeeeecCCc
Q 004475 305 WCDDSL----ALVNETWYKTSQTRTWLVCPGSKDVAP--RVL-FDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKENDE 376 (751)
Q Consensus 305 ~spdg~----~l~~~~~~~~~~~~l~~~~~~~~~~~~--~~l-~~~~~~~~~~~~~~~-~~~~spDG~~l~~~~~~~~~~ 376 (751)
|+||+. .|+++. ....+||+++++.. +.. +.+ ........ +.| -+++.++|+ |++...
T Consensus 179 ~~~d~d~~~~~lyv~d---~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~----~~pdGiavD~~Gn-lyVa~~----- 244 (314)
T d1pjxa_ 179 VRHMNDGRPYQLIVAE---TPTKKLWSYDIKGP-AKIENKKVWGHIPGTHE----GGADGMDFDEDNN-LLVANW----- 244 (314)
T ss_dssp EEECTTSCEEEEEEEE---TTTTEEEEEEEEET-TEEEEEEEEEECCCCSS----CEEEEEEEBTTCC-EEEEEE-----
T ss_pred ECCCCCcceeEEEEEe---ecccceEEeeccCc-cccceeeEEEEcccccc----ccceeeEEecCCc-EEEEEc-----
Confidence 998865 344432 34468888876543 111 111 11111000 000 155667775 333331
Q ss_pred ceEEEEccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEE
Q 004475 377 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 456 (751)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~ 456 (751)
....|+++|.++++.......+.. ....++|.+|+++|+++... ...||++
T Consensus 245 ---------------~~g~I~~~dp~~g~~~~~i~~p~~-----------~~t~~afg~d~~~lyVt~~~---~g~i~~~ 295 (314)
T d1pjxa_ 245 ---------------GSSHIEVFGPDGGQPKMRIRCPFE-----------KPSNLHFKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp ---------------TTTEEEEECTTCBSCSEEEECSSS-----------CEEEEEECTTSSEEEEEETT---TTEEEEE
T ss_pred ---------------CCCEEEEEeCCCCEEEEEEECCCC-----------CEEEEEEeCCCCEEEEEECC---CCcEEEE
Confidence 123789999887765443333211 12236889999988877532 4679999
Q ss_pred EcCC
Q 004475 457 SWPL 460 (751)
Q Consensus 457 ~~~~ 460 (751)
++.-
T Consensus 296 ~~~~ 299 (314)
T d1pjxa_ 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 8654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=3.3e-06 Score=84.97 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=40.2
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe----e-ceeEE-EEEecCCceEEEeee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK----L-DLRFS-VSWCDDSLALVNETW 317 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~----~-~~~~~-~~~spdg~~l~~~~~ 317 (751)
+.++.|+|||++ ++.+.. ..+.|++++.+ .++ ....... . ..... +.|+|||+.++...+
T Consensus 147 ~h~v~~sPdG~~-l~v~d~-----------g~d~v~~~~~~-~~g-~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e 212 (365)
T d1jofa_ 147 IHGMVFDPTETY-LYSADL-----------TANKLWTHRKL-ASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp EEEEEECTTSSE-EEEEET-----------TTTEEEEEEEC-TTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCCE-EEEeeC-----------CCCEEEEEEcc-CCC-ceeeccceeecCCCCceEEEEECCCCceEEEecc
Confidence 458999999998 565431 22456666653 112 2222111 1 11233 889999997766552
Q ss_pred ecccceeEEEecCCC
Q 004475 318 YKTSQTRTWLVCPGS 332 (751)
Q Consensus 318 ~~~~~~~l~~~~~~~ 332 (751)
. ...|..++.+.
T Consensus 213 ~---~~~V~v~~~~~ 224 (365)
T d1jofa_ 213 A---GNRICEYVIDP 224 (365)
T ss_dssp T---TTEEEEEEECT
T ss_pred C---CCEEEEEEecC
Confidence 2 34565555544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=4.9e-06 Score=81.31 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCC--CceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~ 233 (751)
..|++++.+|+.+.+... .....++|+|||+ |++..... ..+++++.. .+....+...+..
T Consensus 49 ~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--- 112 (302)
T d2p4oa1 49 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNA------------DSIPVVSLVKSDGTVETLLTLPDA--- 112 (302)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECT------------TSCEEEEEECTTSCEEEEEECTTC---
T ss_pred CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCC-eEEEecCC------------ceEEEEEecccccceeeccccCCc---
Confidence 589999998876665544 6778999999998 44443321 123444433 2333333332211
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee--------cee-EE-E
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--------DLR-FS-V 303 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------~~~-~~-~ 303 (751)
.....+.+.+||+ +++... ....++.++.. +......... ... .. -
T Consensus 113 --------~~~n~i~~~~~g~--~~v~~~-----------~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~n 168 (302)
T d2p4oa1 113 --------IFLNGITPLSDTQ--YLTADS-----------YRGAIWLIDVV---QPSGSIWLEHPMLARSNSESVFPAAN 168 (302)
T ss_dssp --------SCEEEEEESSSSE--EEEEET-----------TTTEEEEEETT---TTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred --------cccceeEEccCCC--EEeecc-----------ccccceeeecc---CCcceeEecCCccceeeccCcccccc
Confidence 1134678899986 444321 22456666553 2211111110 011 11 2
Q ss_pred EEecCCceEEEeeeecccceeEEEecCCCCCCc--ceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEE
Q 004475 304 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA--PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 381 (751)
Q Consensus 304 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~ 381 (751)
..+.|+..+++.. ....+||+++.+..... ......... ... +++++||+ |++...
T Consensus 169 gi~~~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~--pdg------ia~d~dG~-l~va~~---------- 226 (302)
T d2p4oa1 169 GLKRFGNFLYVSN---TEKMLLLRIPVDSTDKPGEPEIFVEQTN--IDD------FAFDVEGN-LYGATH---------- 226 (302)
T ss_dssp EEEEETTEEEEEE---TTTTEEEEEEBCTTSCBCCCEEEEESCC--CSS------EEEBTTCC-EEEECB----------
T ss_pred cccccCCceeeec---CCCCeEEeccccccccccccccccCCCC--Ccc------eEECCCCC-EEEEEc----------
Confidence 3345667777755 33468898887764111 111111111 111 88999997 444441
Q ss_pred EccCCCCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceee---ccCCCEEEEEEec--------CCCC
Q 004475 382 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDI---NLNQLKILTSKES--------KTEI 450 (751)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~--------~~~~ 450 (751)
....|++++.+ |+...+...... ...+..++| ++|++.|+++... ...+
T Consensus 227 ----------~~~~V~~i~p~-G~~~~~~~~~~~---------~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~ 286 (302)
T d2p4oa1 227 ----------IYNSVVRIAPD-RSTTIIAQAEQG---------VIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVP 286 (302)
T ss_dssp ----------TTCCEEEECTT-CCEEEEECGGGT---------CTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCC
T ss_pred ----------CCCcEEEECCC-CCEEEEEecCCC---------CCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCC
Confidence 12368888885 555555443321 111123467 7788988876533 2234
Q ss_pred CeEEEEEc
Q 004475 451 TQYHILSW 458 (751)
Q Consensus 451 ~~l~~~~~ 458 (751)
+.++.+++
T Consensus 287 ~~~~~~~~ 294 (302)
T d2p4oa1 287 ANVVRLEV 294 (302)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEeC
Confidence 55666664
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.3e-05 Score=77.11 Aligned_cols=158 Identities=14% Similarity=-0.024 Sum_probs=83.7
Q ss_pred eeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCC-ceEeEeeceeEEEEEecCCceEEEeeeeccccee
Q 004475 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFSVSWCDDSLALVNETWYKTSQTR 324 (751)
Q Consensus 246 ~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 324 (751)
...+++|++. ++..+ ..+.|.++++. ... ...+......+. .++++++.|+..+. ...
T Consensus 180 ~~~~~~~~~~-l~s~~------------~dg~i~~~d~~---~~~~~~~~~~~~~~v~-~~~~~~~~l~s~s~----d~~ 238 (342)
T d2ovrb2 180 VYSLQFDGIH-VVSGS------------LDTSIRVWDVE---TGNCIHTLTGHQSLTS-GMELKDNILVSGNA----DST 238 (342)
T ss_dssp EEEEEECSSE-EEEEE------------TTSCEEEEETT---TCCEEEEECCCCSCEE-EEEEETTEEEEEET----TSC
T ss_pred cccccCCCCE-EEEEe------------CCCeEEEeecc---cceeeeEeccccccee-EEecCCCEEEEEcC----CCE
Confidence 4577888887 55443 23578888875 222 222222233333 44556677766542 235
Q ss_pred EEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCC
Q 004475 325 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 404 (751)
Q Consensus 325 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 404 (751)
|.+.+.... .....+....... ....+++++++.++..+.+ ..|++||+.+|
T Consensus 239 i~iwd~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~s~D---------------------g~i~iwd~~tg 290 (342)
T d2ovrb2 239 VKIWDIKTG-QCLQTLQGPNKHQ------SAVTCLQFNKNFVITSSDD---------------------GTVKLWDLKTG 290 (342)
T ss_dssp EEEEETTTC-CEEEEECSTTSCS------SCEEEEEECSSEEEEEETT---------------------SEEEEEETTTC
T ss_pred EEEEecccc-cccccccccceee------eceeecccCCCeeEEEcCC---------------------CEEEEEECCCC
Confidence 666666653 1112222111111 1114466777777776622 37999999998
Q ss_pred ceeEEeec-cchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcC
Q 004475 405 SKERIWES-NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 459 (751)
Q Consensus 405 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~ 459 (751)
+..+.... ........+ ..++||||+..++......+.-..|+++|++
T Consensus 291 ~~i~~~~~~~~~~~~~~v-------~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 291 EFIRNLVTLESGGSGGVV-------WRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp CEEEEEEECTTGGGTCEE-------EEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CEEEEEecccCCCCCCCE-------EEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 87543322 110000011 1258899987665544343445678888875
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.60 E-value=2.5e-08 Score=101.14 Aligned_cols=209 Identities=7% Similarity=-0.032 Sum_probs=108.9
Q ss_pred eEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCc
Q 004475 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (751)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~ 255 (751)
.......+||||+|++.... +.+|-++|+++.+..++...+.. .++.++.++|||++
T Consensus 73 ~~s~t~gtpDGr~lfV~d~~------------~~rVavIDl~t~k~~~ii~iP~g-----------~gphgi~~spdg~t 129 (441)
T d1qnia2 73 HISMTDGRYDGKYLFINDKA------------NTRVARIRLDIMKTDKITHIPNV-----------QAIHGLRLQKVPKT 129 (441)
T ss_dssp EEEEETTEEEEEEEEEEETT------------TTEEEEEETTTTEEEEEEECTTC-----------CCEEEEEECCSSBC
T ss_pred CcceecccCCCCEEEEEcCC------------CCEEEEEECCCCcEeeEEecCCC-----------CCccceEEeccCCE
Confidence 44456678999999887543 45788999998877665443322 34557899999998
Q ss_pred eEEEEEeccCCCC-----ccc-cCcccceeeccCCCCCCCCc-eEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 256 TLYWVEAQDRGDA-----NVE-VSPRDIIYTQPAEPAEGEKP-EILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 256 ~i~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
+.+++..+..... ... ......+..+|.+ .... .++ ...+... +.++|||++++.++...+. +..
T Consensus 130 ~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~---t~~v~~qI-~v~~~p~~v~~spdGk~a~vt~~nse~---~~~ 202 (441)
T d1qnia2 130 NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE---TMDVAWQV-IVDGNLDNTDADYTGKYATSTCYNSER---AVD 202 (441)
T ss_dssp CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT---TCSEEEEE-EESSCCCCEEECSSSSEEEEEESCTTC---CSS
T ss_pred EEEEeccCCcccccCcccccccccccceEEeecCc---cceeeEEE-ecCCCccceEECCCCCEEEEEecCCCc---eEE
Confidence 4444433321100 000 0011123334443 2222 222 2234455 8999999998776633221 111
Q ss_pred ecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCcee
Q 004475 328 VCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 407 (751)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 407 (751)
++..+. .....+...+.... ..++|||++++... ...+.+.+..+.+..
T Consensus 203 id~~t~-~~~d~i~v~n~p~~--------~~~~~dGk~~~v~~----------------------~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 203 LAGTMR-NDRDWVVVFNVERI--------AAAVKAGNFKTIGD----------------------SKVPVVDGRGESEFT 251 (441)
T ss_dssp HHHHTC-SSBCEEEEEEHHHH--------HHHHHTTCCBCCTT----------------------CCCCEEECSSSCSSE
T ss_pred EeccCc-ceEEEEEeCCccce--------EEEecCCCEEEeCC----------------------CCcEEEEcccCCceE
Confidence 222221 11111211111110 45789999664422 112333344433333
Q ss_pred EEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCC
Q 004475 408 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 460 (751)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~ 460 (751)
...... ..++.+++||||++++.+. ..-..+.++|++.
T Consensus 252 ~~IPvg------------ksPhGv~vSPDGkyl~~~~---~~~~tvsv~d~~k 289 (441)
T d1qnia2 252 RYIPVP------------KNPHGLNTSPDGKYFIANG---KLSPTVSVIAIDK 289 (441)
T ss_dssp EEECCB------------SSCCCEEECTTSCEEEEEC---TTSSBEEEEEGGG
T ss_pred EEEeCC------------CCccCceECCCCCEEEEeC---CcCCcEEEEEeeh
Confidence 222221 1244579999999888764 2234588888753
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.59 E-value=1e-07 Score=91.95 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=58.1
Q ss_pred hHHHHHHhCCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 545 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 545 ~~~~~~~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
.....|.++||.|++++ ..|.+.. +...+++.+.|+.+.+.. ..+++.++||||||.++..++.++|+
T Consensus 30 ~i~~~L~~~G~~v~~~~---~~~~~~~-------~~~a~~l~~~i~~~~~~~--g~~~v~ligHS~GG~~~r~~~~~~p~ 97 (285)
T d1ex9a_ 30 GIPSALRRDGAQVYVTE---VSQLDTS-------EVRGEQLLQQVEEIVALS--GQPKVNLIGHSHGGPTIRYVAAVRPD 97 (285)
T ss_dssp THHHHHHHTTCCEEEEC---CCSSSCH-------HHHHHHHHHHHHHHHHHH--CCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCEEEEeC---CCCCCCc-------HHHHHHHHHHHHHHHHHc--CCCeEEEEEECccHHHHHHHHHHCCc
Confidence 45678889999999944 4455432 223344444454444432 34689999999999999999999999
Q ss_pred ceeEEEEccCCC
Q 004475 625 LFCCGIARSGSY 636 (751)
Q Consensus 625 ~~~~~v~~~~~~ 636 (751)
+++.++.+++..
T Consensus 98 ~v~~lv~i~tPh 109 (285)
T d1ex9a_ 98 LIASATSVGAPH 109 (285)
T ss_dssp GEEEEEEESCCT
T ss_pred cceeEEEECCCC
Confidence 999999988763
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.57 E-value=2.8e-07 Score=87.73 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=91.3
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEE
Q 004475 553 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCG 629 (751)
Q Consensus 553 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~---p~~~~~~ 629 (751)
..+.|+. .+..|++.........+.+.+++.+ .|++.. ...++.|+||||||.+|..+|.+. ...+..+
T Consensus 69 ~~~~V~a---l~~pG~~~~e~~~~s~~~~a~~~~~---~i~~~~--~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~l 140 (255)
T d1mo2a_ 69 GIAPVRA---VPQPGYEEGEPLPSSMAAVAAVQAD---AVIRTQ--GDKPFVVAGHSAGALMAYALATELLDRGHPPRGV 140 (255)
T ss_dssp TTCCEEE---ECCTTSSTTCCEESSHHHHHHHHHH---HHHHTT--SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEE
T ss_pred CCceEEE---EeCCCcCCCCCCCCCHHHHHHHHHH---HHHHhC--CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEE
Confidence 3577888 4455665544433344555554443 444432 235799999999999999998754 3457888
Q ss_pred EEccCCCCCCCCc----------cCccccc---ccch-----hhHHHHHhcCcccccCCCCCCEEEEEcCCCCCCCCChH
Q 004475 630 IARSGSYNKTLTP----------FGFQTEF---RTLW-----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM 691 (751)
Q Consensus 630 v~~~~~~d~~~~~----------~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~vp~~~~ 691 (751)
+++.+........ ....... ...+ ...+....+ ....+.+|++++.+.+|.... ..
T Consensus 141 vlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~----~~~~~~~p~l~v~a~~~~~~~--~~ 214 (255)
T d1mo2a_ 141 VLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAYDRLTGQW----RPRETGLPTLLVSAGEPMGPW--PD 214 (255)
T ss_dssp EEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHHHHHHHHHHHHC----CCCCCCCCEEEEECCSSSSCC--TT
T ss_pred EEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHHHHHHHHHHhcC----CCccccceEEEeecCCCCCcc--hh
Confidence 8877642200000 0000000 0000 001111222 234578999999998875543 21
Q ss_pred HHHHHHHHHH-hCCCcEEEEEeCCCCCcCCccccHHHHHHHHHHHHH
Q 004475 692 QAERFFDALK-GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 737 (751)
Q Consensus 692 ~~~~~~~~l~-~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 737 (751)
. ... .....++++.+|+ +|..+..+........|.+||.
T Consensus 215 ~------~w~~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 215 D------SWKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp C------CCCCCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred h------HHHHhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 1 111 1234678999997 6764435667778888888874
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.3e-05 Score=79.62 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred cceeEEeecCCCCCCCCccc-ccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC
Q 004475 4 FTGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (751)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~ 82 (751)
...|.+||+.+ ++... +.. ....+...+||||+ .|+.. .....|.+++...++.........
T Consensus 32 Dg~i~vWd~~~----~~~~~~l~~--H~~~V~~l~~s~~~-~l~s~----------s~D~~i~iw~~~~~~~~~~~~~~~ 94 (355)
T d1nexb2 32 DKMIRVYDSIN----KKFLLQLSG--HDGGVWALKYAHGG-ILVSG----------STDRTVRVWDIKKGCCTHVFEGHN 94 (355)
T ss_dssp TTEEEEEETTT----TEEEEEEEC--CSSCEEEEEEETTT-EEEEE----------ETTCCEEEEETTTTEEEEEECCCS
T ss_pred CCeEEEEECCC----CcEEEEEEC--CCCCEEEEEEcCCC-EEEEE----------eccccccccccccccccccccccc
Confidence 45799999988 76543 331 23368889999976 55553 233677777877766444433222
Q ss_pred ccccceeeeeEEecCCcEEEEeec
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.. .......++++++.++..+.
T Consensus 95 ~~--~~~~~~~~~~~~~~~~~~~~ 116 (355)
T d1nexb2 95 ST--VRCLDIVEYKNIKYIVTGSR 116 (355)
T ss_dssp SC--EEEEEEEEETTEEEEEEEET
T ss_pred cc--ccccccccccccceeeeecC
Confidence 11 12345678899998888754
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=8.7e-08 Score=78.27 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=65.8
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
..+|.++.....- .-|.||++||.+ ..|.. .+.++|.|++ +|.+|
T Consensus 7 ~~~G~~l~y~~~G----------~G~pvlllHG~~--------------~~w~~--------~L~~~yrvi~---~DlpG 51 (122)
T d2dsta1 7 HLYGLNLVFDRVG----------KGPPVLLVAEEA--------------SRWPE--------ALPEGYAFYL---LDLPG 51 (122)
T ss_dssp EETTEEEEEEEEC----------CSSEEEEESSSG--------------GGCCS--------CCCTTSEEEE---ECCTT
T ss_pred EECCEEEEEEEEc----------CCCcEEEEeccc--------------ccccc--------cccCCeEEEE---Eeccc
Confidence 3466666666542 147889999842 11211 1457999999 66778
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004475 568 EGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 624 (751)
Q Consensus 568 ~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~ 624 (751)
+|.+..+....++..+++.+.++.+ +.++..++||||||.+++.+++..+.
T Consensus 52 ~G~S~~p~~s~~~~a~~i~~ll~~L------~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 52 YGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp STTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cCCCCCcccccchhHHHHHHHHHHh------CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 8887655555566666666665554 34678999999999999999997754
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-07 Score=92.16 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=42.8
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004475 554 RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 633 (751)
Q Consensus 554 G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 633 (751)
++.|++ .+.+|+|.+. ..+..+.+...++..+ .+..++.++||||||.+|+.+|.++|+++..++.+.
T Consensus 49 ~~~v~~---~d~~g~~~~~----~~~~~a~~~~~~~~~~-----~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 49 SIPTYG---LQCTRAAPLD----SIHSLAAYYIDCIRQV-----QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp SSCEEE---ECCCTTSCCS----CHHHHHHHHHHHHHHH-----CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCeEEE---EeCCCCCCCC----CHHHHHHHHHHHHHHh-----cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 678888 4555766542 2344455444444332 223689999999999999999999998877766544
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.48 E-value=4.9e-08 Score=104.47 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=83.8
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~~~ 572 (751)
+..-+|.|+.....+ ++|+||++|||++..+.. ..+.+........++.++++||.++||- ..|.-...
T Consensus 98 L~LnI~~P~~~~~~~--~~PVlv~ihGG~f~~g~~--------~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~ 167 (534)
T d1llfa_ 98 LTINVVRPPGTKAGA--NLPVMLWIFGGGFEIGSP--------TIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD 167 (534)
T ss_dssp CEEEEEECTTCCTTC--CEEEEEEECCSTTTSCCG--------GGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH
T ss_pred CEEEEEECCCCCCCC--CCeEEEEECCCccccCCC--------CCCCchhccchhhhccCCeEEEEeecCCCcccccCCc
Confidence 677788897654433 599999999998654322 2222111111224457899999988852 12221100
Q ss_pred --CCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh-----CC---CceeEEEEccCC
Q 004475 573 --PNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH-----AP---HLFCCGIARSGS 635 (751)
Q Consensus 573 --~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~-----~p---~~~~~~v~~~~~ 635 (751)
.........+.|...|++|+++.- .=||++|.|+|+|.||..+..++.. .| ..|..+|+.+|.
T Consensus 168 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 168 DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 000011245789999999999852 1489999999999999988766542 11 258999999974
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.48 E-value=4.3e-08 Score=105.08 Aligned_cols=131 Identities=20% Similarity=0.270 Sum_probs=84.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHH-HhCCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~~~~~~~-~~g~g~~ 571 (751)
+..-+|.|+.....+ ++|+||++|||++..++.. .+.+. ......+ +..+++||.++||- ..|+-..
T Consensus 106 L~LnI~~P~~~~~~~--~lPV~V~ihGG~f~~G~~~--------~~~~~-~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~ 174 (544)
T d1thga_ 106 LYLNVFRPAGTKPDA--KLPVMVWIYGGAFVYGSSA--------AYPGN-SYVKESINMGQPVVFVSINYRTGPFGFLGG 174 (544)
T ss_dssp CEEEEEEETTCCTTC--CEEEEEEECCCTTCCSGGG--------GCCSH-HHHHHHHHTTCCCEEEEECCCCHHHHHCCS
T ss_pred CEEEEEECCCCCCCC--CCCEEEEeccCCCccCCCc--------cCCcc-hhhhhhhhccCCeEEEecccccccccccCC
Confidence 677777887654443 5999999999987654321 11110 0112223 46788999977752 2232111
Q ss_pred CC--CchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCC
Q 004475 572 LP--NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~--~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~~~ 635 (751)
.. ........+.|.+.|++|+++.- .=|+++|-|+|+|.||..+..+++.. ...|..+|+.+|.
T Consensus 175 ~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 175 DAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp HHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred chhhccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 00 00011345889999999999851 13799999999999999888776532 2479999999975
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.3e-07 Score=101.25 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCCC-CCC---C
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI-IGE---G 569 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~-~g~---g 569 (751)
+..-+|.|...... .++|++|++|||++..++. ..+.+ ...++.++.+||.++||-. .|. +
T Consensus 97 L~LnI~~P~~~~~~--~~lPV~v~ihGG~~~~gs~--------~~~~~-----~~~~~~~~vIvVt~nYRLg~~GFl~~~ 161 (532)
T d2h7ca1 97 LYLNIYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STYDG-----LALAAHENVVVVTIQYRLGIWGFFSTG 161 (532)
T ss_dssp CEEEEEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTSCC-----HHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CEEEEEECCCCCCC--CCcEEEEEEeCCccccccc--------ccCCc-----hhhhhcCceEEEEEeeccCCCcccccc
Confidence 56677789764333 3599999999998754332 21211 2344678999999888522 232 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCC
Q 004475 570 DKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSY 636 (751)
Q Consensus 570 ~~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~~ 636 (751)
...... ...+.|.+.|++|+++.- .=|+++|-|+|+|.||..+..++.. ....|..+|+.++..
T Consensus 162 ~~~~~g---N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 162 DEHSRG---NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp STTCCC---CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred cccccc---ccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 111111 235789999999999851 1379999999999999999888764 235799999999753
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=1.2e-07 Score=100.00 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCC--
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGD-- 570 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~-- 570 (751)
+..-+|.|+.. ..++|+||++|||++..++... .. ......+.+.+++||.++||- ..|.=.
T Consensus 82 L~lni~~P~~~----~~~lPV~v~ihGG~~~~g~~~~--------~~---~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~ 146 (483)
T d1qe3a_ 82 LYVNVFAPDTP----SQNLPVMVWIHGGAFYLGAGSE--------PL---YDGSKLAAQGEVIVVTLNYRLGPFGFLHLS 146 (483)
T ss_dssp CEEEEEEECSS----CCSEEEEEEECCSTTTSCCTTS--------GG---GCCHHHHHHHTCEEEEECCCCHHHHSCCCT
T ss_pred CEEEEEECCCC----CCCCceEEEEeecccccCCccc--------cc---cccccccccCceEEEeecccccchhhcccc
Confidence 67777778642 2359999999999876443211 11 011233345679999988752 223210
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 571 KLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 571 ~~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
...........+.|...|++|+++.- .=||++|.|+|+|.||..+..++... ...|..+|+.+|..
T Consensus 147 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 147 SFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp TTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 10011112345789999999998851 13899999999999999998887643 25799999999864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.44 E-value=1.5e-05 Score=77.98 Aligned_cols=238 Identities=10% Similarity=0.093 Sum_probs=133.1
Q ss_pred eEEeecCCCCCCCCcccccCCCCcc---cccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCC-
Q 004475 7 IGIHRLLPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD- 82 (751)
Q Consensus 7 ~~~~~~~~~~~~g~~~~l~~~~~~~---~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~- 82 (751)
|+.++..+ ++.+.+....... .....+++|||..|+.. +....|.+++.+++....+.....
T Consensus 48 I~r~d~~~----~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va----------d~~~~i~~~~~~g~~~~~~~~~~~g 113 (314)
T d1pjxa_ 48 ILRIDLKT----GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA----------DMRLGLLVVQTDGTFEEIAKKDSEG 113 (314)
T ss_dssp EEEECTTT----CCEEEEECCEETTEECCEEEEEECSSSSEEEEE----------ETTTEEEEEETTSCEEECCSBCTTS
T ss_pred EEEEECCC----CcEEEEECCccccCCCcceeEEEeCCCCEEEEE----------ECCCeEEEEeCCCcEEEEEeccccc
Confidence 77777776 7766554211111 13457899999877654 233568899987766554433222
Q ss_pred ccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEE
Q 004475 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (751)
Q Consensus 83 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (751)
..++ ..+.++..|||+ |+|+............. . .......||.+
T Consensus 114 ~~~~-~pndl~~d~~G~-lyvtd~~~~~~~~~~~~-------------------~--------------~~~~~G~v~~~ 158 (314)
T d1pjxa_ 114 RRMQ-GCNDCAFDYEGN-LWITAPAGEVAPADYTR-------------------S--------------MQEKFGSIYCF 158 (314)
T ss_dssp CBCB-CCCEEEECTTSC-EEEEECBCBCTTSCCCB-------------------T--------------TSSSCEEEEEE
T ss_pred cccC-CCcEEEECCCCC-EEEecCccCcccccccc-------------------e--------------eccCCceEEEE
Confidence 2222 135678999995 67763321111000000 0 00022689999
Q ss_pred cCCCCceecCCC-ceEEeeeeCCCCc----eEEEEEecCCcccccccCCCceeEEEEeCCC-ceee---eeccCCCCCCC
Q 004475 163 SLDGTAKDFGTP-AVYTAVEPSPDQK----YVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVR---ELCDLPPAEDI 233 (751)
Q Consensus 163 ~~~G~~~~lt~~-~~~~~~~~SpDG~----~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~---~l~~~~~~~~~ 233 (751)
+.+|+...+... .....++|+||++ +|++.... ...|++++++. +.+. .+...+..
T Consensus 159 ~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~--- 223 (314)
T d1pjxa_ 159 TTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGT--- 223 (314)
T ss_dssp CTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCC---
T ss_pred eecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec------------ccceEEeeccCccccceeeEEEEcccc---
Confidence 998876655443 3345788998875 56654322 45688887642 2221 11111111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE-eEeeceeEE-EEEecCCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~-~~~spdg~~ 311 (751)
......++++.++|+ |+.+.. ..+.|++++.+ ++.... +........ ++|.||++.
T Consensus 224 ------~~~~pdGiavD~~Gn--lyVa~~-----------~~g~I~~~dp~---~g~~~~~i~~p~~~~t~~afg~d~~~ 281 (314)
T d1pjxa_ 224 ------HEGGADGMDFDEDNN--LLVANW-----------GSSHIEVFGPD---GGQPKMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp ------SSCEEEEEEEBTTCC--EEEEEE-----------TTTEEEEECTT---CBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred ------ccccceeeEEecCCc--EEEEEc-----------CCCEEEEEeCC---CCEEEEEEECCCCCEEEEEEeCCCCE
Confidence 011234788999997 555431 23578998865 444433 332233455 899999998
Q ss_pred EEEeeeecccceeEEEecCCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
|+.+. ....+||++++...
T Consensus 282 lyVt~---~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 282 IFVTE---HENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEE---TTTTEEEEEECSSC
T ss_pred EEEEE---CCCCcEEEEECCCC
Confidence 87655 23468999988664
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=1.1e-07 Score=102.76 Aligned_cols=135 Identities=18% Similarity=0.147 Sum_probs=82.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~-~~g~g~~ 571 (751)
+..-+|.|...... ..++|+||++|||++..++...........+ ....++. .+.+||.++||- ..|.-..
T Consensus 81 L~LNI~~P~~~~~~-~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~------dg~~la~~~~vIvVt~nYRlg~~GFl~~ 153 (579)
T d2bcea_ 81 LYLNIWVPQGRKEV-SHDLPVMIWIYGGAFLMGASQGANFLSNYLY------DGEEIATRGNVIVVTFNYRVGPLGFLST 153 (579)
T ss_dssp CEEEEEEEECSSSC-CCSEEEEEECCCCSEEEC-------CTTGGG------CCHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEECCCCCCC-CCCCcEEEEECCCcccCCCCCCcccCCcccc------chhhhhccCCEEEEeecccccccccccc
Confidence 66777778643221 2359999999999876544322211110001 1234444 468888877752 2222111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGS 635 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~~~ 635 (751)
..........+.|...|++|+++.- .=||++|-|+|+|.||..+..++.. ....|..+|+.+|.
T Consensus 154 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 154 GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 0111112345788999999999851 1379999999999999999877653 34579999999975
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.41 E-value=1.6e-07 Score=100.48 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=83.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDKL 572 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~~~ 572 (751)
+..-+|.|... ..++|++|++|||++..++..... + .....++.++.+||.++||- ..|.-...
T Consensus 92 L~LnI~~P~~~----~~~lPV~v~ihGG~~~~g~~~~~~------~-----~~~~~~~~~~vvvVt~nYRlg~~GFl~~~ 156 (532)
T d1ea5a_ 92 LYLNIWVPSPR----PKSTTVMVWIYGGGFYSGSSTLDV------Y-----NGKYLAYTEEVVLVSLSYRVGAFGFLALH 156 (532)
T ss_dssp CEEEEEECSSC----CSSEEEEEEECCSTTTCCCTTCGG------G-----CTHHHHHHHTCEEEECCCCCHHHHHCCCT
T ss_pred CEEEEEeCCCC----CCCCcEEEEEEcCCcccccCCccc------c-----CcchhhcccCccEEEEeeccccccccccc
Confidence 56667778642 235899999999987554332111 1 11233467899999988853 22221110
Q ss_pred -CCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 573 -PNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 573 -~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
.........+.|...|++|+++.- .=||++|.|+|+|.||..+..++... ...|..+|+.++...
T Consensus 157 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 157 GSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp TCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 001111235789999999999851 13799999999999999988776632 247999999887643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6e-05 Score=71.45 Aligned_cols=227 Identities=12% Similarity=-0.024 Sum_probs=140.2
Q ss_pred ceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhh
Q 004475 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (751)
Q Consensus 61 ~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (751)
..+|..+++++.+...+..... .+..+.|.+..++|+++-..
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~-----~~~~id~d~~~~~lYw~D~~--------------------------------- 50 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLR-----NVVALDTEVASNRIYWSDLS--------------------------------- 50 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCS-----SEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CCeEEEEECCCCcceeeeCCCC-----ceEEEEEEeCCCEEEEEECC---------------------------------
Confidence 3578999999988777754333 24577888999999987321
Q ss_pred ccCCccchhhhhhheeeEEEEEcCCC-----Cceec-CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEE
Q 004475 141 LLKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (751)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~G-----~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~ 213 (751)
...|+..+++| ..+.+ ... .....+++.+-++.|+++... ...|++
T Consensus 51 ---------------~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v 103 (266)
T d1ijqa1 51 ---------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSV 103 (266)
T ss_dssp ---------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEE
T ss_pred ---------------CCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEe
Confidence 03566666644 12222 222 445567887788889886433 346889
Q ss_pred EeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceE
Q 004475 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (751)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (751)
+++++...+.+.... ...++.++..|...+ +++++.. ....|++.+++ +...+.
T Consensus 104 ~~~~g~~~~~~~~~~------------~~~P~~l~vd~~~g~-ly~~~~~----------~~~~I~r~~~d---Gs~~~~ 157 (266)
T d1ijqa1 104 ADTKGVKRKTLFREN------------GSKPRAIVVDPVHGF-MYWTDWG----------TPAKIKKGGLN---GVDIYS 157 (266)
T ss_dssp EETTSSSEEEEEECT------------TCCEEEEEEETTTTE-EEEEECS----------SSCEEEEEETT---SCCEEE
T ss_pred EecCCceEEEEEcCC------------CCCcceEEEEcccCe-EEEeccC----------CCcceeEeccC---CCceec
Confidence 999987655442221 122457888987776 7886511 22479998886 656666
Q ss_pred eEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeee
Q 004475 294 LHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 371 (751)
Q Consensus 294 l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~ 371 (751)
+.... .... +++.+.++.|++.. .....|+.+++++. ..+.+....... ..| ...+.++.+|++...
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d---~~~~~I~~~~~dG~--~~~~~~~~~~~~-----~~p-~~lav~~~~ly~td~ 226 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGG--NRKTILEDEKRL-----AHP-FSLAVFEDKVFWTDI 226 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSC--SCEEEEECTTTT-----SSE-EEEEEETTEEEEEET
T ss_pred ccccccceeeEEEeeccccEEEEec---CCcCEEEEEECCCC--CEEEEEeCCCcc-----ccc-EEEEEECCEEEEEEC
Confidence 55433 2334 88999999998875 23458999999884 334443322110 011 335566777777662
Q ss_pred ecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEE
Q 004475 372 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 409 (751)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 409 (751)
....|++++..+|+...+
T Consensus 227 --------------------~~~~I~~~~~~~g~~~~~ 244 (266)
T d1ijqa1 227 --------------------INEAIFSANRLTGSDVNL 244 (266)
T ss_dssp --------------------TTTEEEEEETTTCCCCEE
T ss_pred --------------------CCCeEEEEECCCCcceEE
Confidence 234788888877765433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=4.4e-05 Score=73.83 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=83.7
Q ss_pred eEEEEEcC-CCCceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCC
Q 004475 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (751)
..|+.+++ +|+.+.+..+.....+.+.+||+.++.. ...|+++|.++++.+.+...+... +
T Consensus 40 ~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~---------------~~gl~~~d~~tg~~~~l~~~~~~~--~- 101 (295)
T d2ghsa1 40 RELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS---------------DDGLFLRDTATGVLTLHAELESDL--P- 101 (295)
T ss_dssp TEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE---------------TTEEEEEETTTCCEEEEECSSTTC--T-
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE---------------eCccEEeecccceeeEEeeeecCC--C-
Confidence 58999998 5555544444556678888999766543 124889999988877775432210 0
Q ss_pred ccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEE
Q 004475 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVN 314 (751)
Q Consensus 236 ~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~ 314 (751)
......+...|+|+ +++....... ....+.+|.++- +..+.+...-.... +.||+|++.+++
T Consensus 102 -----~~~~nd~~vd~~G~--iw~~~~~~~~-----~~~~g~l~~~~~-----g~~~~~~~~~~~~Ng~~~s~d~~~l~~ 164 (295)
T d2ghsa1 102 -----GNRSNDGRMHPSGA--LWIGTMGRKA-----ETGAGSIYHVAK-----GKVTKLFADISIPNSICFSPDGTTGYF 164 (295)
T ss_dssp -----TEEEEEEEECTTSC--EEEEEEETTC-----CTTCEEEEEEET-----TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred -----cccceeeEECCCCC--EEEEeccccc-----cccceeEeeecC-----CcEEEEeeccCCcceeeecCCCceEEE
Confidence 11234678999997 5555432111 112345666542 23444443322334 899999999888
Q ss_pred eeeecccceeEEEecCCC
Q 004475 315 ETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~ 332 (751)
+. +....||.++.+.
T Consensus 165 ~d---t~~~~I~~~~~d~ 179 (295)
T d2ghsa1 165 VD---TKVNRLMRVPLDA 179 (295)
T ss_dssp EE---TTTCEEEEEEBCT
T ss_pred ee---cccceeeEeeecc
Confidence 66 3346788887654
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=1.5e-07 Score=100.91 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCC---C
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGE---G 569 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~---g 569 (751)
+..-+|.|.... ..++|++|++|||++..++...... ......+..+.+|+.++||- ..|. +
T Consensus 97 L~LnI~~P~~~~---~~~lPV~v~ihGG~~~~gs~~~~~~-----------~~~~~~~~~~vvvVt~nYRlg~~Gfl~~~ 162 (542)
T d2ha2a1 97 LYLNVWTPYPRP---ASPTPVLIWIYGGGFYSGAASLDVY-----------DGRFLAQVEGAVLVSMNYRVGTFGFLALP 162 (542)
T ss_dssp CEEEEEEESSCC---SSCEEEEEEECCSTTTCCCTTSGGG-----------CTHHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEecCCCC---CCCCcEEEEEEECccccccCccccc-----------CchhhhhhccceeEeeeeeccceeeeccc
Confidence 566677786422 2359999999999875443321111 11222345789999988852 1222 2
Q ss_pred CC-CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004475 570 DK-LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 636 (751)
Q Consensus 570 ~~-~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~ 636 (751)
.. .... ...+.|.+.|++|+++.- .=||++|.|+|+|.||..+..++... ...|..+|+.++..
T Consensus 163 ~~~~~~g---N~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 163 GSREAPG---NVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp TCSSCCS---CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred ccccCCC---cCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 11 1111 235789999999999851 13799999999999999998877643 24799999998854
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=0.00016 Score=68.27 Aligned_cols=226 Identities=8% Similarity=0.025 Sum_probs=137.1
Q ss_pred eEEEEEcCCC-CceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCce----eeeeccCCCC
Q 004475 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPA 230 (751)
Q Consensus 157 ~~l~~~~~~G-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~ 230 (751)
..|..+++++ +...+... .....+.|.+..++|+++... ...|+..++++.. .+.+..
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~------------~~~I~~~~l~~~~~~~~~~~~~~---- 73 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------------QRMICSTQLDRAHGVSSYDTVIS---- 73 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------------TTEEEEEEC--------CEEEEC----
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC------------CCEEEEEEecCCCCCcceEEEEe----
Confidence 4578889866 55555444 667788899999999886432 2357777776432 111111
Q ss_pred CCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecC
Q 004475 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDD 308 (751)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spd 308 (751)
.....+.++++.+-++. ||++.. ....|++.+++ +.....+... ..... ++..|.
T Consensus 74 --------~~~~~p~glAvD~~~~~-lY~~d~-----------~~~~I~v~~~~---g~~~~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 74 --------RDIQAPDGLAVDWIHSN-IYWTDS-----------VLGTVSVADTK---GVKRKTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp --------SSCSCCCEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SSSEEEEEECTTCCEEEEEEETT
T ss_pred --------CCCCCcceEEEeeccce-EEEEec-----------CCCEEEeEecC---CceEEEEEcCCCCCcceEEEEcc
Confidence 11122447888888888 888652 23578888886 5444444433 33344 788888
Q ss_pred CceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCCCC
Q 004475 309 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 388 (751)
Q Consensus 309 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (751)
...|+++... ....|+++++++. ..+.+.......... +++.+.++.|++..
T Consensus 131 ~g~ly~~~~~--~~~~I~r~~~dGs--~~~~l~~~~~~~p~g------l~iD~~~~~lYw~d------------------ 182 (266)
T d1ijqa1 131 HGFMYWTDWG--TPAKIKKGGLNGV--DIYSLVTENIQWPNG------ITLDLLSGRLYWVD------------------ 182 (266)
T ss_dssp TTEEEEEECS--SSCEEEEEETTSC--CEEEEECSSCSCEEE------EEEETTTTEEEEEE------------------
T ss_pred cCeEEEeccC--CCcceeEeccCCC--ceecccccccceeeE------EEeeccccEEEEec------------------
Confidence 8888876532 2357999999984 445555433222111 77888888888876
Q ss_pred CCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeE
Q 004475 389 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 465 (751)
Q Consensus 389 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 465 (751)
.....|.++++.+...+.+...... . .....++.++..|+++... ...|++++..+|+..+
T Consensus 183 --~~~~~I~~~~~dG~~~~~~~~~~~~--~---------~~p~~lav~~~~ly~td~~---~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 183 --SKLHSISSIDVNGGNRKTILEDEKR--L---------AHPFSLAVFEDKVFWTDII---NEAIFSANRLTGSDVN 243 (266)
T ss_dssp --TTTTEEEEEETTSCSCEEEEECTTT--T---------SSEEEEEEETTEEEEEETT---TTEEEEEETTTCCCCE
T ss_pred --CCcCEEEEEECCCCCEEEEEeCCCc--c---------cccEEEEEECCEEEEEECC---CCeEEEEECCCCcceE
Confidence 2234788899976655555443221 1 1112445567788887533 4579999987765443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=6.6e-05 Score=70.90 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=145.4
Q ss_pred CCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccc-cceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCC
Q 004475 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (751)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 120 (751)
|.+|.|.. ...|..+++++....++-....... ...+..+++.+..++|+++...
T Consensus 1 ~~fLl~s~-----------~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------- 56 (263)
T d1npea_ 1 GTHLLFAQ-----------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------- 56 (263)
T ss_dssp CEEEEEEE-----------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT-------------
T ss_pred CCEEEEeC-----------CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC-------------
Confidence 67888854 3788899988765444311110000 0013356777778888886221
Q ss_pred CCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCCC-CceecCC-C-ceEEeeeeCCCCceEEEEEecCC
Q 004475 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRP 197 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (751)
...|+..+++| ..+.+.. . .....+++..-++.|+++...
T Consensus 57 -----------------------------------~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~-- 99 (263)
T d1npea_ 57 -----------------------------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-- 99 (263)
T ss_dssp -----------------------------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--
T ss_pred -----------------------------------CCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC--
Confidence 14788888866 4444432 3 556677777678888886432
Q ss_pred cccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccc
Q 004475 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~ 277 (751)
...|.++++++...+.+.... ...++.++..|.... ++++... .....
T Consensus 100 ----------~~~I~~~~~dg~~~~~l~~~~------------l~~p~~l~vdp~~g~-ly~t~~~---------~~~~~ 147 (263)
T d1npea_ 100 ----------LDRIEVAKMDGTQRRVLFDTG------------LVNPRGIVTDPVRGN-LYWTDWN---------RDNPK 147 (263)
T ss_dssp ----------TTEEEEEETTSCSCEEEECSS------------CSSEEEEEEETTTTE-EEEEECC---------SSSCE
T ss_pred ----------CCEEEEEecCCceEEEEeccc------------ccCCcEEEEecccCc-EEEeecC---------CCCcE
Confidence 346889999887655443221 123458899999887 7886521 11236
Q ss_pred eeeccCCCCCCCCceEeEeec-eeEE-EEEecCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCC
Q 004475 278 IYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 355 (751)
Q Consensus 278 l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 355 (751)
|++.+++ +...+.+.... .... +++.+.++.|++.. .....|+.+++++. ..+.+...-...
T Consensus 148 I~r~~~d---G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d---~~~~~I~~~~~~g~--~~~~v~~~~~~P-------- 211 (263)
T d1npea_ 148 IETSHMD---GTNRRILAQDNLGLPNGLTFDAFSSQLCWVD---AGTHRAECLNPAQP--GRRKVLEGLQYP-------- 211 (263)
T ss_dssp EEEEETT---SCCCEEEECTTCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTEE--EEEEEEECCCSE--------
T ss_pred EEEecCC---CCCceeeeeecccccceEEEeecCcEEEEEe---CCCCEEEEEECCCC--CeEEEECCCCCc--------
Confidence 8888886 55555554332 2234 78888999888865 23458999999884 334443321111
Q ss_pred CeeeCCCCCEEEEeeeecCCcceEEEEccCCCCCCCCCceeEEEecCCCceeEEee
Q 004475 356 MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 411 (751)
Q Consensus 356 ~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 411 (751)
...+-++.+|++... ....|+++|..+|+...+..
T Consensus 212 -~~lav~~~~lYwtd~--------------------~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 212 -FAVTSYGKNLYYTDW--------------------KTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp -EEEEEETTEEEEEET--------------------TTTEEEEEETTTTEEEEEEC
T ss_pred -EEEEEECCEEEEEEC--------------------CCCEEEEEECCCCccceEEC
Confidence 233445667777662 23479999998887655543
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.35 E-value=2.5e-07 Score=98.43 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCC-CCCCCCC
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIP-IIGEGDK 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~-~~g~g~~ 571 (751)
+..-+|.|+..... .++|++|++|||++..++. ..+. .....++ ..+++|+.++||- ..|.=..
T Consensus 81 L~LnI~~P~~~~~~--~~~PV~v~ihGG~~~~G~~--------~~~~----~~~~~~~~~~~vVvVt~nYRlg~~GFl~~ 146 (517)
T d1ukca_ 81 LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYN----GTQVIQASDDVIVFVTFNYRVGALGFLAS 146 (517)
T ss_dssp CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCC----CHHHHHHTTSCCEEEEECCCCHHHHHCCC
T ss_pred CEEEEEeCCCCCCC--CCceEEEEEcCCccccCCC--------cccc----chhhhhhhccccceEEEEecccceeecCc
Confidence 56667778754333 3589999999998765432 1111 1122233 4677888877752 2222110
Q ss_pred CC--CchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh----CCCceeEEEEccCCCC
Q 004475 572 LP--NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH----APHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~--~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~~~~d 637 (751)
.. ........+.|...|++|+++.- .=|+++|.|+|+|.||..+..++.. ....|..+|+.+|...
T Consensus 147 ~~~~~~~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~ 221 (517)
T d1ukca_ 147 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP 221 (517)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccc
Confidence 00 00011345789999999999851 1379999999999999988766543 2247999999998643
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.3e-07 Score=97.80 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=82.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHhCCeEEEEcCCCC-CCCCCCC-
Q 004475 494 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDK- 571 (751)
Q Consensus 494 i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~-~~g~g~~- 571 (751)
+..-+|.|... ..++|+||++|||++..++...... ......++.+.+||.++||- ..|.-..
T Consensus 90 L~lnI~~P~~~----~~~~PV~v~ihGG~~~~gs~~~~~~-----------~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~ 154 (526)
T d1p0ia_ 90 LYLNVWIPAPK----PKNATVLIWIYGGGFQTGTSSLHVY-----------DGKFLARVERVIVVSMNYRVGALGFLALP 154 (526)
T ss_dssp CEEEEEEESSC----CSSEEEEEEECCSTTTSCCTTCGGG-----------CTHHHHHHHCCEEEEECCCCHHHHHCCCT
T ss_pred CEEEEEeCCCC----CCCCceEEEEECCCcccccCccccc-----------CccccccccceeEEecccccccccccCCC
Confidence 56667778642 2358999999999876544322111 11222346799999988752 2221110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 572 LPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 572 ~~~~~~~~~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
..........+.|...|++|+++.- .=|+++|-|+|+|.||..+..++... ...|..+|+.++...
T Consensus 155 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~~ 225 (526)
T d1p0ia_ 155 GNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 225 (526)
T ss_dssp TCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred CcccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhccccccc
Confidence 0011112345789999999998851 13789999999999999987666532 347888898887643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=4.1e-06 Score=85.45 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=76.3
Q ss_pred eEEEEEcC-CCCc-e------ecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eecc
Q 004475 157 AQLVLGSL-DGTA-K------DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCD 226 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~------~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~ 226 (751)
..|.++|+ +|+. . .+..+ ..+..++|||||++|+..+.++. ...+.+||+++++.. .+..
T Consensus 205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECB
T ss_pred CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeecc
Confidence 46777777 5522 1 22333 67889999999999988766532 235778999876543 3322
Q ss_pred CCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeE----E
Q 004475 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF----S 302 (751)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~ 302 (751)
..........+......+..++|||||+. |+-.+ ..+.|.+++++. +.....+..+...+ .
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s------------~D~~v~vWd~~~--g~~~~~l~gH~~~v~~~~~ 339 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAG------------WDGKLRFWDVKT--KERITTLNMHCDDIEIEED 339 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSE-EEEEE------------TTSEEEEEETTT--TEEEEEEECCGGGCSSGGG
T ss_pred ccccccceeeeecccCceeeeccCCCCCe-eEEEC------------CCCEEEEEECCC--CCEEEEECCcCCcccCCcc
Confidence 22221222223334455788999999997 55443 336899999862 22333343332222 1
Q ss_pred -EEEecCCceEE
Q 004475 303 -VSWCDDSLALV 313 (751)
Q Consensus 303 -~~~spdg~~l~ 313 (751)
+.|+|+|..++
T Consensus 340 ~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 340 ILAVDEHGDSLA 351 (393)
T ss_dssp CCCBCTTSCBCS
T ss_pred EEEECCCCCEEE
Confidence 67899998764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.29 E-value=0.00037 Score=59.93 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=119.6
Q ss_pred CCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCC
Q 004475 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (751)
Q Consensus 41 DG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 120 (751)
|+..|.|+... .+..++++++ +++.+.||..+-.. ...-.+.=.+|.|...-.++..
T Consensus 24 ~~d~ll~~~~s-------eG~vni~~l~--g~~~vkLtkePI~~------~~~Pk~~ldfi~f~RDV~kGkE-------- 80 (313)
T d2hu7a1 24 DGDKLLVVGFS-------EGSVNAYLYD--GGETVKLNREPINS------VLDPHYGVGRVILVRDVSKGAE-------- 80 (313)
T ss_dssp TTTEEEEEEEE-------TTEEEEEEES--SSSCEECCSSCCSE------ECEECTTBSEEEEEEECSTTSC--------
T ss_pred cCCcEEEEEec-------cceEEEEEEe--CCEEEEEecccccC------cCCCccCcceEEEEeehhcCcc--------
Confidence 45557776532 5667777766 89999998877521 1111222246777755433331
Q ss_pred CCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcCC--CCceecCCCceEEeeeeCCCCceEEEEEecCCc
Q 004475 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPY 198 (751)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--G~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~ 198 (751)
.-.|+..++. |+..++..+..+.-++..-|++.|+|+...
T Consensus 81 -----------------------------------~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gas--- 122 (313)
T d2hu7a1 81 -----------------------------------QHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGAT--- 122 (313)
T ss_dssp -----------------------------------CEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEEC---
T ss_pred -----------------------------------eeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEeccc---
Confidence 1478999997 888888877555555556689999998654
Q ss_pred ccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccce
Q 004475 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (751)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l 278 (751)
....++|-++++.++.|...|.- +|.=.-.|++ |+-..-- ...+..+
T Consensus 123 ---------ed~~~LYviegGklrkL~~vPpF---------------sFVtDI~~d~-I~G~g~~--------~g~~~sf 169 (313)
T d2hu7a1 123 ---------EDRVALYALDGGGLRELARLPGF---------------GFVSDIRGDL-IAGLGFF--------GGGRVSL 169 (313)
T ss_dssp ---------SSCEEEEEEETTEEEEEEEESSC---------------EEEEEEETTE-EEEEEEE--------ETTEEEE
T ss_pred ---------CCceEEEEEeCCceeeeccCCCc---------------ceEEeccCCe-EEEEeee--------cCCcceE
Confidence 23466777788989988776633 2222233444 3322210 1122358
Q ss_pred eeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecc-cceeEEEecCCCC
Q 004475 279 YTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSK 333 (751)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~ 333 (751)
|+.|+. .+..+.++..++.+. +.++++.+.+ +..++ +......+|+..+
T Consensus 170 F~adl~---SG~lri~tpkeGS~~~ay~~~gnKV~---sdyEt~gEsywit~D~~s~ 220 (313)
T d2hu7a1 170 FTSNLS---SGGLRVFDSGEGSFSSASISPGMKVT---AGLETAREARLVTVDPRDG 220 (313)
T ss_dssp EEEETT---TEEEEEECCSSEEEEEEEECTTSCEE---EEEEESSCEEEEEECTTTC
T ss_pred EEEecc---cCCEEEecCCCCcccceeEccCceee---eccCCCCceEEEEEecccC
Confidence 888885 567788888899999 9999988862 22222 3334445677764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=0.00026 Score=66.60 Aligned_cols=226 Identities=9% Similarity=0.057 Sum_probs=137.7
Q ss_pred eEEEEEcCCCC-cee------cCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCC
Q 004475 157 AQLVLGSLDGT-AKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (751)
Q Consensus 157 ~~l~~~~~~G~-~~~------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (751)
..|..++++|. ... +..+ ..+..+++.+..++|+++... ...|++.+++++..+.+....
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------~~~I~~~~l~g~~~~~v~~~~ 77 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQD 77 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECTT
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------------CCeEEEEEcccCCcEEEEEec
Confidence 57888888662 221 1112 334567888888889876433 346889999877666553221
Q ss_pred CCCCCCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEe
Q 004475 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWC 306 (751)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~s 306 (751)
. ..+.++++..-++. ||++.. ....|.+.+++ +...+.+.... .... ++..
T Consensus 78 ~------------~~p~~iAvD~~~~~-lY~~d~-----------~~~~I~~~~~d---g~~~~~l~~~~l~~p~~l~vd 130 (263)
T d1npea_ 78 L------------GSPEGIALDHLGRT-IFWTDS-----------QLDRIEVAKMD---GTQRRVLFDTGLVNPRGIVTD 130 (263)
T ss_dssp C------------CCEEEEEEETTTTE-EEEEET-----------TTTEEEEEETT---SCSCEEEECSSCSSEEEEEEE
T ss_pred c------------ccccEEEEeccCCe-EEEecc-----------CCCEEEEEecC---CceEEEEecccccCCcEEEEe
Confidence 1 12346788777777 888652 23478888876 55555554432 3345 7888
Q ss_pred cCCceEEEeeeecccceeEEEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEeeeecCCcceEEEEccCC
Q 004475 307 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 386 (751)
Q Consensus 307 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~~~~~~~~~~~~~~~~~ 386 (751)
|....|+++.... ....|+++++++. ..+.+.......-. .+++.+.++.|++...
T Consensus 131 p~~g~ly~t~~~~-~~~~I~r~~~dG~--~~~~i~~~~~~~P~------glaiD~~~~~lYw~d~--------------- 186 (263)
T d1npea_ 131 PVRGNLYWTDWNR-DNPKIETSHMDGT--NRRILAQDNLGLPN------GLTFDAFSSQLCWVDA--------------- 186 (263)
T ss_dssp TTTTEEEEEECCS-SSCEEEEEETTSC--CCEEEECTTCSCEE------EEEEETTTTEEEEEET---------------
T ss_pred cccCcEEEeecCC-CCcEEEEecCCCC--Cceeeeeecccccc------eEEEeecCcEEEEEeC---------------
Confidence 9988888766332 2346999999884 44444433222100 1677788888888762
Q ss_pred CCCCCCCceeEEEecCCCceeEEeeccchhhhhceeeeecCCcceeeccCCCEEEEEEecCCCCCeEEEEEcCCCceeEe
Q 004475 387 FTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 466 (751)
Q Consensus 387 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~l~~~~~~~g~~~~l 466 (751)
....|.+.+++++..+.+...-. .+ ..++.++++|+++.+. ...|++++..+|+..+.
T Consensus 187 -----~~~~I~~~~~~g~~~~~v~~~~~-----~P---------~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 187 -----GTHRAECLNPAQPGRRKVLEGLQ-----YP---------FAVTSYGKNLYYTDWK---TNSVIAMDLAISKEMDT 244 (263)
T ss_dssp -----TTTEEEEEETTEEEEEEEEECCC-----SE---------EEEEEETTEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred -----CCCEEEEEECCCCCeEEEECCCC-----Cc---------EEEEEECCEEEEEECC---CCEEEEEECCCCccceE
Confidence 23478888887655554433211 11 2344457888887644 45799999888876554
Q ss_pred e
Q 004475 467 T 467 (751)
Q Consensus 467 t 467 (751)
.
T Consensus 245 ~ 245 (263)
T d1npea_ 245 F 245 (263)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.26 E-value=3.8e-05 Score=74.23 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=131.9
Q ss_pred ceeEEeecCCCCCCCCcccccCCCCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCcc
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~ 84 (751)
..|+.++..+ |+.+... ++. ......+.+||+.++-. ...|++++.++++.+.+.......
T Consensus 40 ~~I~r~d~~~----g~~~~~~-~~~--~~~~i~~~~dg~l~va~------------~~gl~~~d~~tg~~~~l~~~~~~~ 100 (295)
T d2ghsa1 40 RELHELHLAS----GRKTVHA-LPF--MGSALAKISDSKQLIAS------------DDGLFLRDTATGVLTLHAELESDL 100 (295)
T ss_dssp TEEEEEETTT----TEEEEEE-CSS--CEEEEEEEETTEEEEEE------------TTEEEEEETTTCCEEEEECSSTTC
T ss_pred CEEEEEECCC----CeEEEEE-CCC--CcEEEEEecCCCEEEEE------------eCccEEeecccceeeEEeeeecCC
Confidence 3577888877 7766554 343 35677888998665442 146999999999988876543321
Q ss_pred ccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC
Q 004475 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (751)
Q Consensus 85 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (751)
-..........|+|+ |+|+........ ....+|.++
T Consensus 101 ~~~~~nd~~vd~~G~-iw~~~~~~~~~~------------------------------------------~~g~l~~~~- 136 (295)
T d2ghsa1 101 PGNRSNDGRMHPSGA-LWIGTMGRKAET------------------------------------------GAGSIYHVA- 136 (295)
T ss_dssp TTEEEEEEEECTTSC-EEEEEEETTCCT------------------------------------------TCEEEEEEE-
T ss_pred CcccceeeEECCCCC-EEEEeccccccc------------------------------------------cceeEeeec-
Confidence 111356778899996 566543211110 113555543
Q ss_pred CCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCcee------eeeccCCCCCCCCCcc
Q 004475 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV------RELCDLPPAEDIPVCY 237 (751)
Q Consensus 165 ~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~~~ 237 (751)
+|+.+++... .....++||||++.+++.... ...|+.++.+.... ......+
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~------------~~~I~~~~~d~~~~~~~~~~~~~~~~~--------- 195 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLDARTGLPTGKAEVFIDST--------- 195 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBCTTTCCBSSCCEEEEECT---------
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecc------------cceeeEeeecccccccccceEEEeccC---------
Confidence 5655555444 444578999999999887543 35688887753211 1111111
Q ss_pred CCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEe-cCCceEEEe
Q 004475 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWC-DDSLALVNE 315 (751)
Q Consensus 238 ~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~s-pdg~~l~~~ 315 (751)
.......+++...+|+ |+++.- ..+.|.+++-+ +.....+.--..... ++|- ||.+.|+.+
T Consensus 196 -~~~g~pdG~~vD~~Gn--lWva~~-----------~~g~V~~~dp~---G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 196 -GIKGGMDGSVCDAEGH--IWNARW-----------GEGAVDRYDTD---GNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp -TSSSEEEEEEECTTSC--EEEEEE-----------TTTEEEEECTT---CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred -cccccccceEEcCCCC--EEeeee-----------CCCceEEecCC---CcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 1112345778888886 444321 23578888864 443333322223445 7785 899998877
Q ss_pred eeecc----------cceeEEEecCCC
Q 004475 316 TWYKT----------SQTRTWLVCPGS 332 (751)
Q Consensus 316 ~~~~~----------~~~~l~~~~~~~ 332 (751)
+.... ....||.+++..
T Consensus 259 ta~~~~~~~~~~~~p~~G~l~~~~~~~ 285 (295)
T d2ghsa1 259 SAREHLDDDAITANPQHGLTFELGIEV 285 (295)
T ss_dssp EBCTTCCHHHHHHCTTTTCEEECSSCC
T ss_pred ECCcCCChhHhccCCCCceEEEEcCCC
Confidence 63321 124688776654
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.26 E-value=7.5e-07 Score=95.91 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=75.9
Q ss_pred CCCccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCC-CCCCCCC-------CCCCchhHH
Q 004475 509 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PIIGEGD-------KLPNDRFVE 579 (751)
Q Consensus 509 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~-~~~g~g~-------~~~~~~~~~ 579 (751)
..++|+||++|||++..++...... ....++ ....+||.++|| +..|.=. .........
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~------------~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN 203 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIY------------NADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN 203 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGG------------CCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC
T ss_pred CCCCeEEEEEeCCCccCCCCccccc------------chhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc
Confidence 3469999999999876544322111 112344 346888887775 2223210 000111123
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004475 580 QLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 637 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~---~id~~~i~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~~~~d 637 (751)
..+.|...|++|+++.- .=||++|-|+|+|.||..+..++... ...|..+|+.++...
T Consensus 204 ~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 204 VGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred ccchHHHHHHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 45789999999999852 13799999999999999998776643 347899999888644
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=7.6e-06 Score=79.05 Aligned_cols=141 Identities=12% Similarity=0.083 Sum_probs=73.9
Q ss_pred eeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEE
Q 004475 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (751)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~ 258 (751)
..+++|+++.+++...+ ...+.+|+............+ ....+..++|+|||++ |+
T Consensus 123 ~~~~~~~~~~~~v~~~~------------~~~v~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~-l~ 178 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEE------------GNTIQVFKLSDLEVSFDLKTP-----------LRAKPSYISISPSETY-IA 178 (287)
T ss_dssp EEEEEECSSEEEEEETT------------TSCEEEEETTEEEEEEECSSC-----------CSSCEEEEEECTTSSE-EE
T ss_pred eeeeeccCcceeeeccc------------cceeeeeeccccceeeeeeec-----------cCCceeEEEeccCccc-cc
Confidence 34678888888876543 224678887654332211111 1123558899999998 55
Q ss_pred EEEeccCCCCccccCcccceeeccCCCCCCCCce--EeEeeceeEE-EEEecCCce----------EEEeeeecccceeE
Q 004475 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--ILHKLDLRFS-VSWCDDSLA----------LVNETWYKTSQTRT 325 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~l~~~~~~~~-~~~spdg~~----------l~~~~~~~~~~~~l 325 (751)
... ..+.+.++++. ..... ........+. ++|+|+++. |+..+ ....|
T Consensus 179 ~g~------------~dg~i~i~d~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs----~D~~i 239 (287)
T d1pgua2 179 AGD------------VMGKILLYDLQ---SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS----LDTNI 239 (287)
T ss_dssp EEE------------TTSCEEEEETT---TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE----TTSCE
T ss_pred ccc------------ccccccceeec---ccccccccccccccccceeeecccccccccccCCCCeeEeec----CCCeE
Confidence 543 23578888874 22111 1122344566 888887653 33222 22356
Q ss_pred EEecCCCCCCcceeeeecccccccCCCCCCCeeeCCCCCEEEEee
Q 004475 326 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 370 (751)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spDG~~l~~~~ 370 (751)
++.++..+ .............+.. ++|+||++ |+..+
T Consensus 240 ~iw~~~~~-~~~~~~~~~h~~~V~~------v~~~~~~~-l~s~g 276 (287)
T d1pgua2 240 FIYSVKRP-MKIIKALNAHKDGVNN------LLWETPST-LVSSG 276 (287)
T ss_dssp EEEESSCT-TCCEEETTSSTTCEEE------EEEEETTE-EEEEE
T ss_pred EEEECCCC-CeEEEEeCCCCCCeEE------EEECCCCE-EEEEE
Confidence 66666553 2222222222223333 77999985 55544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=0.00017 Score=70.43 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=48.6
Q ss_pred eeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CC
Q 004475 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (751)
Q Consensus 88 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G 166 (751)
.+..++|||||++|+..+.+ ..|.++|+ ++
T Consensus 13 ~I~~l~fsp~~~~L~s~s~D-------------------------------------------------g~v~iwd~~~~ 43 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWD-------------------------------------------------GSLTVYKFDIQ 43 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-------------------------------------------------SEEEEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECC-------------------------------------------------CeEEEEEccCC
Confidence 48899999999999987543 34555565 33
Q ss_pred -Cceec---CCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee
Q 004475 167 -TAKDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (751)
Q Consensus 167 -~~~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (751)
....+ ..+ ..+..++|+|++..++++... ...+.+|+.......
T Consensus 44 ~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~------------d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 44 AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV------------QGEILKVDLIGSPSF 92 (342)
T ss_dssp TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET------------TSCEEEECSSSSSSE
T ss_pred CcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc------------ccceeeeeccccccc
Confidence 22222 123 678899999987766655433 346888988765433
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=4.9e-05 Score=73.08 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
..+..++|||||++|+....+ ..+.+||..++...... +......+..++|+|+++
T Consensus 163 ~~v~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~~~~~~-----------~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 163 AKPSYISISPSETYIAAGDVM-------------GKILLYDLQSREVKTSR-----------WAFRTSKINAISWKPAEK 218 (287)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEECC-----------SCCCSSCEEEEEECCCC-
T ss_pred CceeEEEeccCcccccccccc-------------ccccceeeccccccccc-----------ccccccccceeeeccccc
Confidence 567889999999999876543 35889999876543210 011122355788988875
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEeeeecccceeEEE
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNETWYKTSQTRTWL 327 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~ 327 (751)
..... . .+ ..........+.|++++++ ........+......+. +.|+||++ |+... .++.-.||.
T Consensus 219 ~~~~~-~-~~-~~~l~sgs~D~~i~iw~~~-~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g--~D~~v~iW~ 285 (287)
T d1pgua2 219 GANEE-E-IE-EDLVATGSLDTNIFIYSVK-RPMKIIKALNAHKDGVNNLLWETPST-LVSSG--ADACIKRWN 285 (287)
T ss_dssp ------C-CS-CCEEEEEETTSCEEEEESS-CTTCCEEETTSSTTCEEEEEEEETTE-EEEEE--TTSCEEEEE
T ss_pred ccccc-c-CC-CCeeEeecCCCeEEEEECC-CCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE--CCCeEEEEE
Confidence 41111 0 00 0000011123578888874 11222233334455677 99999986 44333 233345664
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=1.4e-05 Score=81.27 Aligned_cols=144 Identities=15% Similarity=0.033 Sum_probs=85.9
Q ss_pred ccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCC-Cc-cccceeeeeEEecCCcEEEEeecCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DI-CLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~-~~-~~~~~~~~~~wspDg~~l~~~~~~~~~ 110 (751)
+....||||| .||.. .....|.++++.+++........ .. .....+..++|||||+.|+..+.+...
T Consensus 187 ~~~v~~s~dg-~lasg----------s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~ 255 (393)
T d1sq9a_ 187 ATSVDISERG-LIATG----------FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255 (393)
T ss_dssp CCEEEECTTS-EEEEE----------CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred EEEEEECCCC-EEEEE----------eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCc
Confidence 5678999998 55432 34467888898887643221111 00 001147789999999999887543110
Q ss_pred CCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCC-ceec-------------CCC-
Q 004475 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDF-------------GTP- 174 (751)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~-~~~l-------------t~~- 174 (751)
..+.++|+ +|+ ...+ ..+
T Consensus 256 ----------------------------------------------~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~ 289 (393)
T d1sq9a_ 256 ----------------------------------------------GCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289 (393)
T ss_dssp ----------------------------------------------EEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred ----------------------------------------------ceeeecccccceeeeeeccccccccceeeeeccc
Confidence 23455555 442 1111 123
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee-eeccCCCCCCCCCccCCccCCCceeeeecCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG 253 (751)
..+..++|||||++|+-.+.+ ..|.+||+++++.. .+..+..... .....++|+|+|
T Consensus 290 ~~V~~l~fspd~~~l~S~s~D-------------~~v~vWd~~~g~~~~~l~gH~~~v~---------~~~~~~~~~~~~ 347 (393)
T d1sq9a_ 290 SWVMSLSFNDSGETLCSAGWD-------------GKLRFWDVKTKERITTLNMHCDDIE---------IEEDILAVDEHG 347 (393)
T ss_dssp SCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTTEEEEEEECCGGGCS---------SGGGCCCBCTTS
T ss_pred CceeeeccCCCCCeeEEECCC-------------CEEEEEECCCCCEEEEECCcCCccc---------CCccEEEECCCC
Confidence 568899999999988765443 46899999877644 3332222111 112246888888
Q ss_pred Cc
Q 004475 254 PS 255 (751)
Q Consensus 254 ~~ 255 (751)
..
T Consensus 348 ~~ 349 (393)
T d1sq9a_ 348 DS 349 (393)
T ss_dssp CB
T ss_pred CE
Confidence 76
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.00018 Score=70.28 Aligned_cols=135 Identities=8% Similarity=0.038 Sum_probs=74.2
Q ss_pred eEEEEEcC-CCCc-eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|.++++ .++. +.+..+ ..+..+ ++++++|+..+.+ ..+.+|+....+...........
T Consensus 197 g~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~s~d-------------~~i~iwd~~~~~~~~~~~~~~~~-- 259 (342)
T d2ovrb2 197 TSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNAD-------------STVKIWDIKTGQCLQTLQGPNKH-- 259 (342)
T ss_dssp SCEEEEETTTCCEEEEECCCCSCEEEE--EEETTEEEEEETT-------------SCEEEEETTTCCEEEEECSTTSC--
T ss_pred CeEEEeecccceeeeEecccccceeEE--ecCCCEEEEEcCC-------------CEEEEEeccccccccccccccee--
Confidence 35777777 5533 333333 444444 4456677665432 36889998765543322211110
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEe-----eceeEE-EEEec
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-----LDLRFS-VSWCD 307 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~~~~-~~~sp 307 (751)
......++++++. ++..+ ..+.|.+++++. +...+.+.. ....+. ++|+|
T Consensus 260 ---------~~~~~~~~~~~~~-~~s~s------------~Dg~i~iwd~~t--g~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 260 ---------QSAVTCLQFNKNF-VITSS------------DDGTVKLWDLKT--GEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp ---------SSCEEEEEECSSE-EEEEE------------TTSEEEEEETTT--CCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred ---------eeceeecccCCCe-eEEEc------------CCCEEEEEECCC--CCEEEEEecccCCCCCCCEEEEEECC
Confidence 0112345556665 44443 235788998851 223333332 233466 99999
Q ss_pred CCceEEEeeeecccceeEEEecCCC
Q 004475 308 DSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 308 dg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|+..|+.+....+....|++.|.+-
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9998887764433445788877754
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.83 E-value=1e-05 Score=77.97 Aligned_cols=106 Identities=8% Similarity=-0.079 Sum_probs=67.4
Q ss_pred ccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHHh-CCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHHH
Q 004475 512 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEA 587 (751)
Q Consensus 512 ~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~ 587 (751)
+|++|++||.. + +....+.......++. ..+.|+++|..... .... ........+.+..
T Consensus 70 ~pt~iiiHGw~-----------~--~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a----~~~Y~~a~~n~~~Vg~~ia~ 132 (337)
T d1rp1a2 70 KKTRFIIHGFI-----------D--KGEENWLLDMCKNMFKVEEVNCICVDWKKGS----QTSYTQAANNVRVVGAQVAQ 132 (337)
T ss_dssp SEEEEEECCCC-----------C--TTCTTHHHHHHHHHTTTCCEEEEEEECHHHH----SSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc-----------C--CCCcchHHHHHHHHHhcCCceEEEEeecccc----CcchHHHHHHHHHHHHHHHH
Confidence 69999999941 1 1112222223334444 56999996663211 1110 0112234466778
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 588 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 588 ~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
.|++|.+...+++++|.|+|||+||++|..++.+. ..+..++.+.|.
T Consensus 133 ~i~~l~~~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA 179 (337)
T d1rp1a2 133 MLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPV 179 (337)
T ss_dssp HHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCC
T ss_pred HHHHHHHhcCCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCC
Confidence 88888776668899999999999999998666655 567888887775
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.0052 Score=57.38 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=62.9
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~ 254 (751)
.....+++.++|+ |++.... ...+++++..+........ . .......++++|+|+
T Consensus 98 ~~p~~iavd~~g~-i~v~d~~------------~~~~~~~~~~~~~~~~~~~-~-----------~~~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 98 NYPEGLAVDTQGA-VYVADRG------------NNRVVKLAAGSKTQTVLPF-T-----------GLNDPDGVAVDNSGN 152 (260)
T ss_dssp CSEEEEEECTTCC-EEEEEGG------------GTEEEEECTTCSSCEECCC-C-----------SCCSCCEEEECTTCC
T ss_pred eecccccccccce-eEeeccc------------cccccccccccceeeeeee-c-----------ccCCcceeeecCCCC
Confidence 4566889999997 4444222 2356677776654332211 1 012245789999997
Q ss_pred ceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-ceeEE-EEEecCCceEEEeeeecccceeEEEecCCC
Q 004475 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFS-VSWCDDSLALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~-~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
++++.. ....|+.++.+ +.....+... ..... +++.++|+ |+++. .....|+.++.++
T Consensus 153 --~~v~~~-----------~~~~i~~~d~~---~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd---~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 153 --VYVTDT-----------DNNRVVKLEAE---SNNQVVLPFTDITAPWGIAVDEAGT-VYVTE---HNTNQVVKLLAGS 212 (260)
T ss_dssp --EEEEEG-----------GGTEEEEECTT---TCCEEECCCSSCCSEEEEEECTTCC-EEEEE---TTTTEEEEECTTC
T ss_pred --Eeeecc-----------ccccccccccc---cceeeeeeccccCCCccceeeeeee-eeeee---cCCCEEEEEeCCC
Confidence 455431 23468888775 3333332211 22233 78889987 43333 2235788888776
Q ss_pred C
Q 004475 333 K 333 (751)
Q Consensus 333 ~ 333 (751)
.
T Consensus 213 ~ 213 (260)
T d1rwia_ 213 T 213 (260)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.72 E-value=2.2e-05 Score=75.40 Aligned_cols=108 Identities=8% Similarity=-0.090 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCCcCcccCCcccCCCCccCCCCchHHHHHH-hCCeEEEEcCCCCCCCCCCCCCC---chhHHHHHHHHH
Q 004475 511 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAE 586 (751)
Q Consensus 511 ~~P~vv~~HGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~ 586 (751)
.+|++|++||-. + +....+.......++ ...+.|+++|..... .. .. .......-+.+.
T Consensus 69 ~~pt~iiiHG~~-----------~--~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a---~~-~Y~~a~~n~~~Vg~~ia 131 (338)
T d1bu8a2 69 DRKTRFIVHGFI-----------D--KGEDGWLLDMCKKMFQVEKVNCICVDWRRGS---RT-EYTQASYNTRVVGAEIA 131 (338)
T ss_dssp TSEEEEEECCSC-----------C--TTCTTHHHHHHHHHHTTCCEEEEEEECHHHH---SS-CHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCccc-----------C--CCCcccHHHHHHHHHhcCCceEEEEechhhc---cc-chHHHHHhHHHHHHHHH
Confidence 379999999931 1 112222223333444 456999996662211 11 10 011223345666
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004475 587 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 635 (751)
Q Consensus 587 ~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~ 635 (751)
..|++|.....++.++|.|+|||+||++|-.+..+-+.++..++.+.|.
T Consensus 132 ~~i~~l~~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 132 FLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHHHHhcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 7778776665678899999999999999999998877778888887775
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.0049 Score=57.92 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=35.3
Q ss_pred eecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeec
Q 004475 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (751)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 106 (751)
.+++||++||..+ ..+.|.++++.+++..+...+... .+.. .++|++.|+..+.
T Consensus 20 c~~~d~~~l~sgs----------~Dg~i~vWd~~~~~~~~~l~~H~~----~V~~--v~~~~~~l~s~s~ 73 (293)
T d1p22a2 20 CLQYDDQKIVSGL----------RDNTIKIWDKNTLECKRILTGHTG----SVLC--LQYDERVIITGSS 73 (293)
T ss_dssp EEECCSSEEEEEE----------SSSCEEEEESSSCCEEEEECCCSS----CEEE--EECCSSEEEEEET
T ss_pred EEEEcCCEEEEEe----------CCCeEEEEECCCCcEEEEEecCCC----CEee--eecccceeecccc
Confidence 5889999988753 336677789888886554433221 2444 4558888877643
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.00015 Score=67.89 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCC
Q 004475 584 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSY 636 (751)
Q Consensus 584 d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~~~~ 636 (751)
.+..+.+.|++... ..++|-++||||||.++-.++.+.+. .+..+|.+++..
T Consensus 64 ~~e~v~~~I~~~~~-~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsPH 116 (279)
T d1ei9a_ 64 QVTTVCQILAKDPK-LQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQH 116 (279)
T ss_dssp HHHHHHHHHHSCGG-GTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCCT
T ss_pred HHHHHHHHHHhccc-cccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCCC
Confidence 33444455543221 23589999999999999999988875 588888888753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.19 E-value=0.065 Score=50.11 Aligned_cols=132 Identities=8% Similarity=0.074 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCc-eecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..|...+.+|+. ..+... .....++..++|+.++.. .. ...+++++.+++....+.....
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~-~~------------~~~~~~~~~~g~~~~~~g~~~~---- 155 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVE-CK------------VMRVIIFDQNGNVLHKFGCSKH---- 155 (279)
T ss_dssp CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEE-TT------------TTEEEEECTTSCEEEEEECTTT----
T ss_pred cccccccccccceeecCCCcccccceeccccCCcEEEEe-ec------------cceeeEeccCCceeeccccccc----
Confidence 367777777743 233222 445678888999754432 21 2357788887765544322111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeece---eEE-EEEecCC
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFS-VSWCDDS 309 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~-~~~spdg 309 (751)
......+++.++|+ ++++.. ....|++++.+ +.....+. ..+ ... +++.++|
T Consensus 156 -------~~~~~~i~~d~~g~--i~v~d~-----------~~~~V~~~d~~---G~~~~~~g-~~g~~~~P~giavD~~G 211 (279)
T d1q7fa_ 156 -------LEFPNGVVVNDKQE--IFISDN-----------RAHCVKVFNYE---GQYLRQIG-GEGITNYPIGVGINSNG 211 (279)
T ss_dssp -------CSSEEEEEECSSSE--EEEEEG-----------GGTEEEEEETT---CCEEEEES-CTTTSCSEEEEEECTTC
T ss_pred -------ccccceeeecccee--EEeeec-----------cccceeeeecC---Cceeeeec-ccccccCCcccccccCC
Confidence 11234677888885 555431 22467777764 43222221 111 123 7889999
Q ss_pred ceEEEeeeecccceeEEEecCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~ 332 (751)
+ |+++.. .....|.+.+.++
T Consensus 212 ~-i~Vad~--~~~~~v~~f~~~G 231 (279)
T d1q7fa_ 212 E-ILIADN--HNNFNLTIFTQDG 231 (279)
T ss_dssp C-EEEEEC--SSSCEEEEECTTS
T ss_pred e-EEEEEC--CCCcEEEEECCCC
Confidence 8 444321 1223577777765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.037 Score=51.26 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCc-eecCCC--ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (751)
..++.++..+.. ...... .....++++|+|+ |++.... ...++.++.++.....+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~----- 180 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTD----- 180 (260)
T ss_dssp TEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSS-----
T ss_pred ccccccccccceeeeeeecccCCcceeeecCCCC-Eeeeccc------------cccccccccccceeeeeeccc-----
Confidence 356667765522 222211 3445788899997 5554322 346888998876544321111
Q ss_pred CCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeec-eeEE-EEEecCCce
Q 004475 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFS-VSWCDDSLA 311 (751)
Q Consensus 234 ~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~-~~~spdg~~ 311 (751)
-..+.+++++++|+ |+++.. ....|+.++.+ +.....+.... .... +++++||.
T Consensus 181 -------~~~p~gi~~d~~g~--l~vsd~-----------~~~~i~~~~~~---~~~~~~~~~~~~~~P~~i~~d~~g~- 236 (260)
T d1rwia_ 181 -------ITAPWGIAVDEAGT--VYVTEH-----------NTNQVVKLLAG---STTSTVLPFTGLNTPLAVAVDSDRT- 236 (260)
T ss_dssp -------CCSEEEEEECTTCC--EEEEET-----------TTTEEEEECTT---CSCCEECCCCSCCCEEEEEECTTCC-
T ss_pred -------cCCCccceeeeeee--eeeeec-----------CCCEEEEEeCC---CCeEEEEccCCCCCeEEEEEeCCCC-
Confidence 12245789999986 565441 23467777764 33333332222 2234 78889986
Q ss_pred EEEeeeecccceeEEEecCCC
Q 004475 312 LVNETWYKTSQTRTWLVCPGS 332 (751)
Q Consensus 312 l~~~~~~~~~~~~l~~~~~~~ 332 (751)
|+++. . ...+|+.++..+
T Consensus 237 l~vad-~--~~~rI~~i~~~~ 254 (260)
T d1rwia_ 237 VYVAD-R--GNDRVVKLTSLE 254 (260)
T ss_dssp EEEEE-G--GGTEEEEECCCG
T ss_pred EEEEE-C--CCCEEEEEeCCC
Confidence 44432 2 234677666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.02 E-value=0.00092 Score=65.19 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=69.7
Q ss_pred ccceeec-----CCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecC
Q 004475 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (751)
Q Consensus 33 ~~~p~~S-----PDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 107 (751)
..+|.+| +||||| |+.. ....+|.++++++-+..+++..+... +...++-+++++..+.....
T Consensus 85 ~HHP~~S~TdGtyDGryl-FVND--------kan~RVAvIdl~~fkt~kIi~iPn~~---~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 85 LHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNAK---GIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp BCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSCC---SEEEEEECCSSBCSEEEEEE
T ss_pred cCCCcccccCCccceeEE-EEEc--------CCCceEEEEECcceeeeEEEecCCCC---CCceeecccCCCeEEEEccC
Confidence 3566665 589887 4433 56789999999999888877655422 24455666666654443221
Q ss_pred CCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhh--eeeEEEEEcC-CC-CceecCCCceEEeeeeC
Q 004475 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY--TTAQLVLGSL-DG-TAKDFGTPAVYTAVEPS 183 (751)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-~G-~~~~lt~~~~~~~~~~S 183 (751)
+... +.+.|+..+... ..+.+..+|. +. ...++.-.+......+|
T Consensus 153 e~~v-------------------------------P~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s 201 (459)
T d1fwxa2 153 EDET-------------------------------PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 201 (459)
T ss_dssp CSCE-------------------------------ESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred cccc-------------------------------ccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccC
Confidence 1110 001111111100 2245667787 44 23344333556689999
Q ss_pred CCCceEEEEEecC
Q 004475 184 PDQKYVLITSMHR 196 (751)
Q Consensus 184 pDG~~i~~~~~~~ 196 (751)
||||++++++.+.
T Consensus 202 ~dGK~af~TsyNS 214 (459)
T d1fwxa2 202 YEGKWAFSTSYNS 214 (459)
T ss_dssp SSSSEEEEEESCT
T ss_pred CCCCEEEEEeccc
Confidence 9999999987553
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.13 Score=47.25 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=32.1
Q ss_pred eEEEEEcC-CCCc-eecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceee
Q 004475 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (751)
Q Consensus 157 ~~l~~~~~-~G~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (751)
..|.++|+ +++. +.+..+ ..+..++| |+++|+..+.+ ..+.+|+...+...
T Consensus 35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D-------------~~i~~~~~~~~~~~ 88 (293)
T d1p22a2 35 NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSD-------------STVRVWDVNTGEML 88 (293)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETT-------------SCEEEEESSSCCEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccc-------------cccccccccccccc
Confidence 45777788 6644 444444 66666655 78877765433 35788988766443
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.024 Score=56.91 Aligned_cols=141 Identities=9% Similarity=0.003 Sum_probs=72.7
Q ss_pred CceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCcccC-CCCccCCCCc--hHHHHHHhCCeEEEEcCCCCCCC
Q 004475 491 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRG-SPNEFSGMTP--TSSLIFLARRFAVLAGPSIPIIG 567 (751)
Q Consensus 491 ~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~G~~v~~~~~~~~~g 567 (751)
+..+..|++ ++..++. ..|+||++-|||.++.- .+.+.. +|-....-.. .....+.+. ..++.+|.+-..|
T Consensus 27 ~~~lfyw~~-~s~~~~~---~~Pl~~WlnGGPG~SS~-~g~~~e~GP~~i~~~~~~~~N~~sW~~~-anllfiD~PvGtG 100 (421)
T d1wpxa1 27 DKHFFFWTF-ESRNDPA---KDPVILWLNGGPGCSSL-TGLFFELGPSSIGPDLKPIGNPYSWNSN-ATVIFLDQPVNVG 100 (421)
T ss_dssp CCEEEEEEE-CCSSCTT---TSCEEEEECCTTTBCTH-HHHHHTTSSEEECTTSCEEECTTCGGGS-SEEEEECCSTTST
T ss_pred CceEEEEEE-EeCCCCC---CCCEEEEECCCCcHHHH-HHHHHhcCCcEECCCCccccCCcccccc-cCEEEEecCCCCC
Confidence 345666655 4333333 36999999999855431 111111 1111100000 000111222 3445556555666
Q ss_pred CCCCCCCc-hhHHHHHHHHHHHHH-HHHHcCCC--CCCcEEEEEeChHHHHHHHHHHh---CC---CceeEEEEccCCCC
Q 004475 568 EGDKLPND-RFVEQLVSSAEAAVE-EVVRRGVA--DPSRIAVGGHSYGAFMTAHLLAH---AP---HLFCCGIARSGSYN 637 (751)
Q Consensus 568 ~g~~~~~~-~~~~~~~~d~~~~v~-~l~~~~~i--d~~~i~l~G~S~GG~~a~~~a~~---~p---~~~~~~v~~~~~~d 637 (751)
++...... .-.....+|+.++++ |+...+.. ...++.|.|-|+||..+..+|.+ .. -.++++++..|+.+
T Consensus 101 fSy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 101 FSYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp TCBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred ceecCCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 55322211 122344566666553 33333332 23579999999999999888743 22 23789999888755
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=96.79 E-value=0.015 Score=59.48 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCCCCCCChHHHHHHHHHHH--------hC--------------------C-----CcEEEEEeCCCCCc
Q 004475 672 KKPILIIHGEVDDKVGLFPMQAERFFDALK--------GH--------------------G-----ALSRLVLLPFEHHV 718 (751)
Q Consensus 672 ~~P~li~~G~~D~~vp~~~~~~~~~~~~l~--------~~--------------------~-----~~~~~~~~~~~~H~ 718 (751)
..++||.+|..|..|| ...++...++|. .. | ....+.++.++||.
T Consensus 372 girVLIy~Gd~D~icn--~~Gte~~i~~L~w~g~~~f~~~~~~~~w~~~~~~~~~~~~vaG~~~~~~nltf~~V~~AGHm 449 (483)
T d1ac5a_ 372 GIEIVLFNGDKDLICN--NKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHM 449 (483)
T ss_dssp TCEEEEEEETTCSTTC--HHHHHHHHHHCEETTEESSCTTCEEEEEEECSSTTCCCCSCCEEEEEETTEEEEEETTCCSS
T ss_pred CCEEEEEECChhhcCC--CHHHHHHHHhCCCccccccccCccccccccccccccCCcEEEEEEEEeCCeEEEEECCcccc
Confidence 3689999999999998 889988888873 10 0 13678899999998
Q ss_pred CCccccHHHHHHHHHHHHHH
Q 004475 719 YAARENVMHVIWETDRWLQK 738 (751)
Q Consensus 719 ~~~~~~~~~~~~~~~~fl~~ 738 (751)
.. ...+...+..+.+||.+
T Consensus 450 vP-~dqP~~a~~mi~~fl~~ 468 (483)
T d1ac5a_ 450 VP-FDKSLVSRGIVDIYSND 468 (483)
T ss_dssp HH-HHCHHHHHHHHHHHTTC
T ss_pred Cc-ccCHHHHHHHHHHHhCC
Confidence 74 44556666666666653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.51 E-value=0.019 Score=55.72 Aligned_cols=108 Identities=9% Similarity=0.095 Sum_probs=61.9
Q ss_pred CCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecCCCceEEEEEe
Q 004475 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (751)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spdG~~~i~~~~~ 262 (751)
.+|||+|++.... +..+-++|+++-+..++...|-. .+...+..+++++...+++..
T Consensus 96 tyDGrylFVNDka------------n~RVAvIdl~~fkt~kIi~iPn~-----------~~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 96 KYDGRFLFMNDKA------------NTRVARVRCDVMKCDAILEIPNA-----------KGIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEETTTTEEEEEEECSSC-----------CSEEEEEECCSSBCSEEEEEE
T ss_pred ccceeEEEEEcCC------------CceEEEEECcceeeeEEEecCCC-----------CCCceeecccCCCeEEEEccC
Confidence 3499999987544 45789999998877776555433 223356777778774455443
Q ss_pred ccC------C-CCccccCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 263 QDR------G-DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 263 ~~~------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
+.. + ........++.+-.+|.+ ......-....+... ..+++||+++++++
T Consensus 153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~---tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 153 EDETPLVNDGTNMEDVANYVNVFTAVDAD---KWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp CSCEESSCSSSSTTCGG-EEEEEEEEETT---TTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred ccccccCCCCccccchhhcceEEEEEecC---CceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 311 0 000001122345566664 222211112344555 89999999988765
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.41 E-value=0.075 Score=45.47 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=74.1
Q ss_pred eeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCC
Q 004475 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (751)
Q Consensus 36 p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 115 (751)
-+..=||+.|||+... .+...||+++ +|+.+.|+..+.-. +.=.-.|++|+=...-..
T Consensus 107 ~S~~yddk~vvF~Gas-------ed~~~LYvie--gGklrkL~~vPpFs-------FVtDI~~d~I~G~g~~~g------ 164 (313)
T d2hu7a1 107 LSGVDTGEAVVFTGAT-------EDRVALYALD--GGGLRELARLPGFG-------FVSDIRGDLIAGLGFFGG------ 164 (313)
T ss_dssp EEEEECSSCEEEEEEC-------SSCEEEEEEE--TTEEEEEEEESSCE-------EEEEEETTEEEEEEEEET------
T ss_pred EEeeecCceEEEeccc-------CCceEEEEEe--CCceeeeccCCCcc-------eEEeccCCeEEEEeeecC------
Confidence 3456799999998642 4557788776 89999997666421 111123666653311000
Q ss_pred CCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC-ceEEeeeeCCCCceEEEEE
Q 004475 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITS 193 (751)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~ 193 (751)
....+++-|+ +|..+-+|.. +.+..+..+|+.|.+.-..
T Consensus 165 ---------------------------------------~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyE 205 (313)
T d2hu7a1 165 ---------------------------------------GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE 205 (313)
T ss_dssp ---------------------------------------TEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEE
T ss_pred ---------------------------------------CcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccC
Confidence 1145899999 8899999988 8888999999998733222
Q ss_pred ecCCcccccccCCCceeEEEEeCCCceeeee
Q 004475 194 MHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (751)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (751)
..+ ...+..+|+..+..+++
T Consensus 206 t~g-----------Esywit~D~~s~~yerv 225 (313)
T d2hu7a1 206 TAR-----------EARLVTVDPRDGSVEDL 225 (313)
T ss_dssp ESS-----------CEEEEEECTTTCCEEEC
T ss_pred CCC-----------ceEEEEEecccCceeee
Confidence 221 11222568887766655
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.11 Score=52.45 Aligned_cols=144 Identities=13% Similarity=-0.005 Sum_probs=79.5
Q ss_pred cCCCceEEEEEEcCCCCCCCCCCCccEEEEEcCCCCcCcccCCccc-CCCCccCCCCc---hHHHHHHhCCeEEEEcCCC
Q 004475 488 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-GSPNEFSGMTP---TSSLIFLARRFAVLAGPSI 563 (751)
Q Consensus 488 ~~~~~~i~~~~~~P~~~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~G~~v~~~~~~ 563 (751)
...+..+..|++.. ..++. ..|+++++-|||.++.-. +.+. -+|..+..-.. .....+.+. ..+|.+|.+
T Consensus 28 ~~~~~~lffw~~~s-~~~~~---~~Pl~~wlnGGPG~SS~~-g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDqP 101 (452)
T d1ivya_ 28 SSGSKHLHYWFVES-QKDPE---NSPVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLESP 101 (452)
T ss_dssp CSTTEEEEEEEECC-SSCGG---GSCEEEEECCTTTBCTHH-HHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECCS
T ss_pred cCCCceEEEEEEEc-CCCCC---CCCEEEEECCCCcHHHHH-HHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEecC
Confidence 34555677666643 32332 379999999998654311 1111 11211111000 011122333 344444554
Q ss_pred CCCCCCCCCC--CchhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CC-CceeEEEEccCCC
Q 004475 564 PIIGEGDKLP--NDRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---AP-HLFCCGIARSGSY 636 (751)
Q Consensus 564 ~~~g~g~~~~--~~~~~~~~~~d~~~~v-~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~---~p-~~~~~~v~~~~~~ 636 (751)
-..|++.... ...-......|+.+++ +|+...+.....++.|+|-|+||..+..+|.. .+ -.++++++.+|+.
T Consensus 102 vGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~ 181 (452)
T d1ivya_ 102 AGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLS 181 (452)
T ss_dssp TTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCS
T ss_pred CCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCcc
Confidence 4566543221 1222345566665555 66666555556789999999999999988753 22 2489999999886
Q ss_pred C
Q 004475 637 N 637 (751)
Q Consensus 637 d 637 (751)
+
T Consensus 182 d 182 (452)
T d1ivya_ 182 S 182 (452)
T ss_dssp B
T ss_pred C
Confidence 5
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.0082 Score=58.62 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=28.6
Q ss_pred CcEEEEEeChHHHHHHHHHHhCC-------------------------CceeEEEEccCCC
Q 004475 601 SRIAVGGHSYGAFMTAHLLAHAP-------------------------HLFCCGIARSGSY 636 (751)
Q Consensus 601 ~~i~l~G~S~GG~~a~~~a~~~p-------------------------~~~~~~v~~~~~~ 636 (751)
.||-|+||||||.-+=+++..-| +.++.+..++.+.
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTTIsTPH 165 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTTIATPH 165 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCT
T ss_pred CceeEeecccccHHHHHHHHHhccccccccccccccccccccccccCCcceEEEEeccCCC
Confidence 58999999999999988876432 2588888888653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.71 E-value=0.77 Score=42.22 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCc-eecC--CC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCC
Q 004475 157 AQLVLGSLDGTA-KDFG--TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (751)
Q Consensus 157 ~~l~~~~~~G~~-~~lt--~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (751)
..+++++.+|+. ..+. .. .....++..++|+ |+++... ...+++++.++.....+. .++..
T Consensus 135 ~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~------------~~~V~~~d~~G~~~~~~g-~~g~~- 199 (279)
T d1q7fa_ 135 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIG-GEGIT- 199 (279)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEES-CTTTS-
T ss_pred ceeeEeccCCceeecccccccccccceeeecccee-EEeeecc------------ccceeeeecCCceeeeec-ccccc-
Confidence 356677776643 2221 12 4556788888886 4444322 346889999887655542 11111
Q ss_pred CCCccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEee-c-eeEE-EEEecCC
Q 004475 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-D-LRFS-VSWCDDS 309 (751)
Q Consensus 233 ~~~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~-~~~~-~~~spdg 309 (751)
..+.++++.|+|+ |+++... .+..|.+++.+ +.-...+... . .... ++..|||
T Consensus 200 ---------~~P~giavD~~G~--i~Vad~~----------~~~~v~~f~~~---G~~~~~~~~~~~~~~p~~vav~~dG 255 (279)
T d1q7fa_ 200 ---------NYPIGVGINSNGE--ILIADNH----------NNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDG 255 (279)
T ss_dssp ---------CSEEEEEECTTCC--EEEEECS----------SSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTT
T ss_pred ---------cCCcccccccCCe--EEEEECC----------CCcEEEEECCC---CCEEEEEeCCCCCCCEeEEEEeCCC
Confidence 2245789999997 5554311 12356676654 4323333221 1 1234 7889999
Q ss_pred ce
Q 004475 310 LA 311 (751)
Q Consensus 310 ~~ 311 (751)
+.
T Consensus 256 ~l 257 (279)
T d1q7fa_ 256 SV 257 (279)
T ss_dssp EE
T ss_pred cE
Confidence 73
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.98 E-value=2 Score=42.55 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=38.7
Q ss_pred ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCceeeeeccCCCCCCCCCccCCccCCCceeeeecC
Q 004475 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (751)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~spd 252 (751)
.....++|.|||+.++..+ . ...|++++.++++.+.+...+.... ....+.+...++++||
T Consensus 27 ~~P~~la~~pdg~llVter-~------------~G~i~~v~~~~g~~~~i~~~~~~~~----~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTER-A------------TGKILRVNPESGSVKTVFQVPEIVN----DADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEET-T------------TCEEEEECTTTCCEEEEEECTTCCC----CTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEe-c------------CCEEEEEECCCCcEeecccCCcccc----ccCCCCceeeEEeCCC
Confidence 4566899999997554431 1 2468899988887776655442211 1123345668999986
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.76 E-value=1 Score=42.71 Aligned_cols=162 Identities=17% Similarity=0.068 Sum_probs=80.3
Q ss_pred ceeEEeecCCCCCCCCcccccCC---CCcccc--c--ceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeec
Q 004475 5 TGIGIHRLLPDDSLGPEKEVHGY---PDGAKI--N--FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (751)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~l~~~---~~~~~~--~--~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~l 77 (751)
-.|+++|+.. ...+.+.+.-. +..... . ...-.+||+...|+.+.. .......+|.++.++.+.+.+
T Consensus 68 G~i~~~dl~~--~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~----~~~~~ieif~~~~~~~~l~~~ 141 (340)
T d1v04a_ 68 GKILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEKSLLHL 141 (340)
T ss_dssp CEEEEEETTS--SSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTTEEEEE
T ss_pred CeEEEEecCC--CCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc----CCCceeEEEEEeCCCCeEEEE
Confidence 4688999987 33334333311 111000 1 122356787777766521 113345677776555443333
Q ss_pred cCCCCccccceeeeeEEecCCcEEEEeecCCCCCCCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheee
Q 004475 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (751)
Q Consensus 78 t~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (751)
......... ..+.++...||. ++++........ ..+.... +.....+
T Consensus 142 ~~v~~~~~~-~pNDv~~~~~g~-fy~Tnd~~~~~~---------------------~~~~~e~----------~~~~~~g 188 (340)
T d1v04a_ 142 KTIRHKLLP-SVNDIVAVGPEH-FYATNDHYFIDP---------------------YLKSWEM----------HLGLAWS 188 (340)
T ss_dssp EEECCTTCS-SEEEEEEEETTE-EEEEESCSCCSH---------------------HHHHHHH----------HTTCCCE
T ss_pred eecCCcccc-CccceEEecCCC-EEEecCccCcCh---------------------hhhhhhH----------hhcCCce
Confidence 222221111 356888888886 555532211000 0000000 0011234
Q ss_pred EEEEEcCCCCceecCCC-ceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCC
Q 004475 158 QLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (751)
Q Consensus 158 ~l~~~~~~G~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (751)
.++.++. ++.+.+... .....+++|||+++|+++... ...|++|++++
T Consensus 189 ~v~~~~~-~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~------------~~~i~~y~~~~ 237 (340)
T d1v04a_ 189 FVTYYSP-NDVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYEKHA 237 (340)
T ss_dssp EEEEECS-SCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECT
T ss_pred eEEEEcC-CceEEEcCCCCccceeEECCCCCEEEEEeCC------------CCeEEEEEeCC
Confidence 5666654 233333333 455689999999999998654 34677777764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.69 E-value=3.2 Score=39.72 Aligned_cols=138 Identities=10% Similarity=0.006 Sum_probs=75.3
Q ss_pred ccceeecCCCCeEEEEEeeccc-ccccCCceeEEEEEcCCCCeeeccCCCCccccceeeeeEEecCCcEEEEeecCCCCC
Q 004475 33 INFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (751)
Q Consensus 33 ~~~p~~SPDG~~iaf~~~~~~~-~~~~~~~~~l~i~~~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 111 (751)
........|||.++|-...+.. .........++++|+.++..+++....... .......++.+||+.+++.....
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~--- 97 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDA--- 97 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSST---
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCC---
Confidence 3445667788777764322111 111123346789999988765543221110 00123457889998777652210
Q ss_pred CCCCCCCCCCCceeeccccccccchhhhhccCCccchhhhhhheeeEEEEEcC-CCCceecCCC---ceEEeeeeCCCCc
Q 004475 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPDQK 187 (751)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~~~~lt~~---~~~~~~~~SpDG~ 187 (751)
..++++|. +..-+++... ......+..+||+
T Consensus 98 ---------------------------------------------~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 98 ---------------------------------------------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp ---------------------------------------------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred ---------------------------------------------cceeEecCccCcccccccccccccccceeeecCCc
Confidence 23455666 4433333222 3445677788999
Q ss_pred eEEEEEecCCcccccccCCCceeEEEEeCCCceeeeecc
Q 004475 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (751)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (751)
.+++-.... ......++++||+.+.+-..+..
T Consensus 133 v~v~GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~ 164 (387)
T d1k3ia3 133 VFTIGGSWS-------GGVFEKNGEVYSPSSKTWTSLPN 164 (387)
T ss_dssp EEEECCCCC-------SSSCCCCEEEEETTTTEEEEETT
T ss_pred eeeeccccc-------cccccceeeeecCCCCceeecCC
Confidence 777643322 12224678999999887665543
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=93.01 E-value=0.07 Score=49.04 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
..+.+++...++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 113 ~~~~~~i~~~v~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 113 EQVVNDYFPVVQEQLTAHP--TYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC--CceEEEEecccchHHHHHHHHH
Confidence 3455666666766655432 3689999999999999988763
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=92.38 E-value=0.076 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
..+..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 117 ~~~~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 117 KLVRDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 344556666666665543 23589999999999999988764
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=92.28 E-value=0.098 Score=47.91 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.+.+++...++.++++.. ..+|.+.|||+||.+|..++..
T Consensus 106 ~i~~~i~~~i~~~~~~~~--~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 106 SVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC--CcceEEeccchhHHHHHHHHHH
Confidence 445666677777666532 3589999999999999988754
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=92.27 E-value=0.098 Score=48.17 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 580 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 580 ~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
.+.+++...++.+.++.. .-+|.++|||+||.+|..++..
T Consensus 119 ~~~~~v~~~v~~~~~~~~--~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 119 SVADTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CcceeeeccchHHHHHHHHHHH
Confidence 445666666666655532 3589999999999999999864
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.88 E-value=3.6 Score=40.52 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=21.2
Q ss_pred eEEEEEcC-CCCceecC---------CC-ceEEeeeeCCC---CceEEEE
Q 004475 157 AQLVLGSL-DGTAKDFG---------TP-AVYTAVEPSPD---QKYVLIT 192 (751)
Q Consensus 157 ~~l~~~~~-~G~~~~lt---------~~-~~~~~~~~SpD---G~~i~~~ 192 (751)
..|++++. +|+.+.+. .. ....++++.|| ..+|+++
T Consensus 48 G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 48 GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 46777776 55433221 11 56678899886 4566654
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=91.84 E-value=0.12 Score=47.50 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 621 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~ 621 (751)
..+..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 112 ~~v~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~ 152 (265)
T d3tgla_ 112 GEVQNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALD 152 (265)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHH
Confidence 344555666665555543 23689999999999999988753
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.61 E-value=13 Score=34.67 Aligned_cols=79 Identities=5% Similarity=-0.083 Sum_probs=41.4
Q ss_pred CceeeeecCCCceEEEEEeccCCCCccc------cCcccceeeccCCCCCCCCceEeEeeceeEE-EEEecCCceEEEee
Q 004475 244 MRSISWRADKPSTLYWVEAQDRGDANVE------VSPRDIIYTQPAEPAEGEKPEILHKLDLRFS-VSWCDDSLALVNET 316 (751)
Q Consensus 244 ~~~~~~spdG~~~i~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~spdg~~l~~~~ 316 (751)
...+....||. ++++........... ....+.++.++. +..+.+...-.... +++|||++.|+.+.
T Consensus 152 pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-----~~~~~~~~~l~~pNGI~~s~d~~~lyVa~ 224 (340)
T d1v04a_ 152 VNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAEGFDFANGINISPDGKYVYIAE 224 (340)
T ss_dssp EEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-----SCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred ccceEEecCCC--EEEecCccCcChhhhhhhHhhcCCceeEEEEcC-----CceEEEcCCCCccceeEECCCCCEEEEEe
Confidence 34778888886 667642211110000 011233444443 33444433323334 89999999888766
Q ss_pred eecccceeEEEecCCC
Q 004475 317 WYKTSQTRTWLVCPGS 332 (751)
Q Consensus 317 ~~~~~~~~l~~~~~~~ 332 (751)
. ...+|++++++.
T Consensus 225 t---~~~~i~~y~~~~ 237 (340)
T d1v04a_ 225 L---LAHKIHVYEKHA 237 (340)
T ss_dssp G---GGTEEEEEEECT
T ss_pred C---CCCeEEEEEeCC
Confidence 3 334677776654
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=86.29 E-value=2 Score=36.66 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----CCceeEEEEccCC
Q 004475 579 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGS 635 (751)
Q Consensus 579 ~~~~~d~~~~v~~l~~~~~id~~~i~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~~~ 635 (751)
...+.++...+....++ ....||+|+|+|+|+.++-.++..- .+++++++++.-.
T Consensus 76 ~~G~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfGDP 134 (197)
T d1cexa_ 76 SAAIREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFGYT 134 (197)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEESCT
T ss_pred hHHHHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEeCC
Confidence 34566666777666655 2347999999999999998887653 2578888888854
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=85.73 E-value=15 Score=34.57 Aligned_cols=83 Identities=7% Similarity=-0.077 Sum_probs=52.8
Q ss_pred eeEEeecCCCCCCCCcccccCC--CCcccccceeecCCCCeEEEEEeecccccccCCceeEEEEEcCCCCeeeccCCCCc
Q 004475 6 GIGIHRLLPDDSLGPEKEVHGY--PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (751)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l~~~--~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~~~~~l~i~~~~~g~~~~lt~~~~~ 83 (751)
.+.++|..+ ++-+++... +........++.+||+.+++-. .+...++++|+.+..-+.+...+..
T Consensus 53 ~~~~yd~~t----~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg---------~~~~~~~~yd~~~~~w~~~~~~~~~ 119 (387)
T d1k3ia3 53 LTSSWDPST----GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG---------NDAKKTSLYDSSSDSWIPGPDMQVA 119 (387)
T ss_dssp EEEEECTTT----CCBCCCEEEECSCCCSSCEEEECTTSCEEEECS---------SSTTCEEEEEGGGTEEEECCCCSSC
T ss_pred EEEEEECCC----CcEeecCCCCCCcccceeEEEEecCCcEEEeec---------CCCcceeEecCccCccccccccccc
Confidence 467899988 776654321 2222344568999997776621 3345788889998888777655432
Q ss_pred cccceeeeeEEecCCcEEEEe
Q 004475 84 CLNAVFGSFVWVNNSTLLIFT 104 (751)
Q Consensus 84 ~~~~~~~~~~wspDg~~l~~~ 104 (751)
. .....+-.+||+.+++.
T Consensus 120 r---~~~~~~~~~dG~v~v~G 137 (387)
T d1k3ia3 120 R---GYQSSATMSDGRVFTIG 137 (387)
T ss_dssp C---SSCEEEECTTSCEEEEC
T ss_pred c---cccceeeecCCceeeec
Confidence 2 12345667899877776
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.82 E-value=14 Score=33.41 Aligned_cols=142 Identities=9% Similarity=0.037 Sum_probs=71.5
Q ss_pred EEEEEcC-CC-CceecCCCceEEeeeeCCCCceEEEEEecCCcccccccCCCceeEEEEeCCCc-eeeeeccCCCCCCCC
Q 004475 158 QLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIP 234 (751)
Q Consensus 158 ~l~~~~~-~G-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~ 234 (751)
.|-+.|+ +. +.+..+-...+..-.|-.+. .|++.. ...+|-|++++. ++..+.+....
T Consensus 84 ~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT--------------~taVYHW~~~g~s~P~k~fdR~~~---- 144 (327)
T d1utca2 84 TLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT--------------DNAVYHWSMEGESQPVKMFDRHSS---- 144 (327)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEESSSS-EEEEEC--------------SSEEEEEESSSSCCCEEEEECCGG----
T ss_pred eEEEEehhHhhhhceEEcCCCcEEEEecCCC-EEEEEc--------------CCceEEEcccCCCCchhhhhhccc----
Confidence 4555566 22 44555444556666787444 555553 335889998653 34444333211
Q ss_pred CccCCccCCCceeeeecCCCceEEEEEeccCCCCccccCcccceeeccCCCCCCCCceEeEeeceeEEEEEecCC-----
Q 004475 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFSVSWCDDS----- 309 (751)
Q Consensus 235 ~~~~~~~~~~~~~~~spdG~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~spdg----- 309 (751)
+ ...++-.+.-++|++|+++..=+...+ .+ .+.+-++..+ .+..+.|..+.+.+. .+--+|
T Consensus 145 --L--~~~QIInY~~d~~~kW~~l~GI~~~~~----~i--~G~mQLYS~e---r~~sQ~ieGhaa~F~-~~~~~g~~~~~ 210 (327)
T d1utca2 145 --L--AGCQIINYRTDAKQKWLLLTGISAQQN----RV--VGAMQLYSVD---RKVSQPIEGHAASFA-QFKMEGNAEES 210 (327)
T ss_dssp --G--TTCEEEEEEECTTSCEEEEEEEEEETT----EE--EEEEEEEETT---TTEEEEECCSEEEEE-EECCTTCSSCE
T ss_pred --c--cCceEEEEEECCCCCEEEEEeEecCCC----ce--eEEEEEEEec---cCcCccccceeeeeE-EEEcCCCCCCc
Confidence 0 123344678899999955442211111 11 1444444443 223444444444333 443332
Q ss_pred ceEEEeeeecccceeEEEecCCCC
Q 004475 310 LALVNETWYKTSQTRTWLVCPGSK 333 (751)
Q Consensus 310 ~~l~~~~~~~~~~~~l~~~~~~~~ 333 (751)
+.++|.. +......|.++++...
T Consensus 211 ~lf~fa~-r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 211 TLFCFAV-RGQAGGKLHIIEVGTP 233 (327)
T ss_dssp EEEEEEE-EETTEEEEEEEECSCC
T ss_pred eEEEEEE-CCCCCcEEEEEEcCCC
Confidence 2345554 3344578888888763
|