Citrus Sinensis ID: 004517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------
Protein Sequence
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKSLTSSSVISNRTASSTSSKDLSLRRLSDRPSDEIAEHEEHEELNTFRRRRNRSQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPSSVQEHTSNVPESGFQLEVGSSLPSSVQQHTSDVSESGFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGSSMKSVASLVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENETELNGKAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHcHcccccccccccccccccccccccccccccHccccccccccccHHHcccccEEEEcccccccccccccEEcccccccccccccccccccHHHHccccccEEcccccccccccccccccHHEEEccccccEEEEEccccEEEEccccccccccccccEEEEEcEEEEcccccccEEEEccccccEEEEcccccccccccccHHHHHHcccccccEccccccEEcccccccccccHccccccccEccccEEEccccccccccccccccEEEEccccccccccccccEccccccEEcccccccHHHHHHHHHHHHHHHHHHHHcccHccccEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccHHHHccccccccccHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILpywseksltsssvisnrtasstsskdlslrrlsdrpsdeiaehEEHEELNTFrrrrnrsqpssleqgsittgyatstdlpcahnsdsvsldkalnasavsqsydpndssgllygnpeseevillgktpesvvevgsdkastvmpnecgnddlggacantesngvvsvdkgqytdvkfesehtpivmptlsahanglgatdidisifgisqevgscfdcplkiensvaqfvpssvqerasdvcqyrdvkvesehtpivmpanavangsltawtdfdgpgatdigvsncgisqevgscldcplevensvaqlvpssvqehtsnvpesgfqlevgsslpssvqqhtsdvsesgfhlevgsssttdsgkpdangssdlmskqensvngkcnieddstiTTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEandmhageiygERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEkfdervplsksvsssqtTCILASSGSSMKSVASLVAEqdltsetlekmspapavdveslksrgdekigDFWRQLSDDGWDLFENETELNGKAL
Flexible Loop (DISEMBL)
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKSltsssvisnrtasstsskdlslrrlsdrpsdeiaeheeheelntfrrrrnrsqpssleqgsiTTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQfvpssvqerasdvcQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPSSVQEHTSNVPESGFQLEVGSSLPSSVQQHTSDVSESGFHLEVGsssttdsgkpdangssdlmskqensvngkcnieddstittivtrsgqICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDervplsksvsssqtTCILASSGSSMKSVASLVAEQDLTsetlekmspapavdveslksrgdekigDFWRQLSDDGWDLFENETELNGKAL
Low Complexity Region (SEG)
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKSLTSSSVISNRTAsstsskdlslrrlsdrpsdEIAeheeheeLNTFRRRRNRSQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPSSVQEHTSNVPESGFQLEVGSSLPSSVQQHTSDVSESGFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERaakeakaaaVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDemretlearlaaaedmrkeaeeekfekeesaraSLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILAssgssmksvasLVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENETELNGKAL
Disordered region (IsUnstruct)
**FNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWS**********************************************************************************************************************L*******************************ACA****NGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVA******************************************************************************NIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMM*************KAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATE***************************************************************************************FLMDRGRVVDSLQGEISVICQDVRLLKEKF****************************************************************IGDFWRQLSDDGWDLF***********
Disordered Region (DISOPRED)
****AVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPY******************************************************************************************************************************************************************************************************IDISIFGISQEVGS**********************************************************DFDGPGATDIGVS*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEK*************************************************************SITTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPS**********ESGFQLE******************SGFHL*****************************NGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQE*********AVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAA**********************LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDER**************************ASLVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENE********
Disordered Region (DISPRO)
*GFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSE*******************************************************************************************SAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPS***ER*SDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPSSVQEHTSNVPESGFQLEVG************************************************************TITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPL************************************************************DFWRQLSDDGWDLFENETEL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKSLTSSSVISNRTASSTSSKDLSLRRLSDRPSDEIAEHEEHEELNTFRRRRNRSQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPESEEVILLGKTPESVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDISIFGISQEVGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGSCLDCPLEVENSVAQLVPSSVQEHTSNVPESGFQLEVGSSLPSSVQQHTSDVSESGFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRxxxxxxxxxxxxxxxxxxxxxMESxxxxxxxxxxxxxxxxxxxxxAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGExxxxxxxxxxxxxxxxxxxxxRDKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGSSMKSVASLVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENETELNGKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
356535824	546	PREDICTED: uncharacterized protein LOC10	0.414	0.567	0.593	2e-94
224131340	549	predicted protein [Populus trichocarpa]	0.374	0.510	0.698	5e-94
297814013	559	hypothetical protein ARALYDRAFT_490272 [	0.397	0.531	0.628	1e-92
357440803	673	hypothetical protein MTR_1g072560 [Medic	0.400	0.444	0.625	2e-91
357440805	397	hypothetical protein MTR_1g072560 [Medic	0.400	0.753	0.625	6e-91
356502823	603	PREDICTED: uncharacterized protein LOC10	0.428	0.530	0.555	3e-90
334186333	556	uncharacterized protein [Arabidopsis tha	0.396	0.532	0.610	3e-90
22328259	552	uncharacterized protein [Arabidopsis tha	0.396	0.536	0.610	3e-90
4263515	539	hypothetical protein [Arabidopsis thalia	0.393	0.545	0.611	3e-90
255584702	600	conserved hypothetical protein [Ricinus	0.386	0.481	0.620	4e-87

>gi|356535824|ref|XP_003536443.1| PREDICTED: uncharacterized protein LOC100820331 [Glycine max]

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/315 (59%), Positives = 240/315 (76%), Gaps = 5/315 (1%)

Query: 432 NIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAK 491
           ++E+D+   +  ++  Q+ RIDLLEE+I++AK NKK LF +MES++N+MREVE+QE+AA+
Sbjct: 230 DVENDNGAKSAGSQYSQVSRIDLLEEIIDEAKTNKKTLFSSMESLINLMREVEVQEKAAE 289

Query: 492 EAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLS 551
           +A   A  GG +I  +++E K ML  AKEANDMHAGE+YGE+AILATE +ELQ+RLL LS
Sbjct: 290 QANMEAATGGSNILARIEEYKTMLVQAKEANDMHAGEVYGEKAILATELKELQSRLLGLS 349

Query: 552 EERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQES 611
           +ERDKSLA+LDEMR  LE RLAAAE+ RK AE++K EKEESAR +L EQE ++E VV ES
Sbjct: 350 DERDKSLAILDEMRHILEERLAAAEESRKAAEQQKLEKEESARKALVEQERLVEMVVHES 409

Query: 612 KLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQT 671
           + LQQ+AEENSKL+EFL+DRGRVVD LQGEISVICQD++LLKEKFD  +PLSKS +SSQT
Sbjct: 410 QRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKFDANLPLSKSFTSSQT 469

Query: 672 TCILASSGSSMKSVASLVAEQDLTSETLEKMSPAPAVDVESLKSR---GDEKIGDFWRQL 728
           +C LASSGSS K++AS        S  + K S   +  +ESL S+    +EK       L
Sbjct: 470 SCKLASSGSSHKTLASDAGSDHSESSGIRKTSWTTS--IESLSSKIGHDEEKSKADHNAL 527

Query: 729 SDDGWDLFENETELN 743
            DDGWD+FE + ELN
Sbjct: 528 LDDGWDIFEKDAELN 542

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131340|ref|XP_002321060.1| predicted protein [Populus trichocarpa] gi|222861833|gb|EEE99375.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/295 (69%), Positives = 244/295 (82%), Gaps = 15/295 (5%)

Query: 446 SGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIF 505
           S Q  +I+LLEE++E AK NKK LF AMESVMNMM+EVE+QE +A++AK  A RGGLDI 
Sbjct: 266 SKQYRQIELLEEIVEAAKDNKKTLFSAMESVMNMMKEVELQEISAEQAKEEAARGGLDIL 325

Query: 506 VKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMR 565
           V++++LKQML HAKEANDMHAGE+YGE+AILATE RELQ RLLSLS+ERD +LA+LDEMR
Sbjct: 326 VEVEKLKQMLVHAKEANDMHAGEVYGEKAILATEVRELQARLLSLSDERDNALAILDEMR 385

Query: 566 ETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLR 625
           +TLE+RLAAAE++RK AE EK EKEE+AR +LAEQE+IMEKVVQESK+LQ++AEEN+KL+
Sbjct: 386 QTLESRLAAAEELRKTAELEKLEKEETARNALAEQEIIMEKVVQESKILQKEAEENAKLQ 445

Query: 626 EFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGSSMKSV 685
           EFLMDRG VVD+LQGEISVICQDVRLLKE+FDERVPLSKSVSSSQT+CILASSGSS+KS+
Sbjct: 446 EFLMDRGCVVDTLQGEISVICQDVRLLKERFDERVPLSKSVSSSQTSCILASSGSSIKSM 505

Query: 686 AS-LVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDF--WRQLSDDGWDLFE 737
           AS L AE   TSE  ++  P  A  VE           DF   +QL DDGWD  E
Sbjct: 506 ASNLAAETGETSELPKE--PILACSVER----------DFSNEKQLLDDGWDFVE 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814013|ref|XP_002874890.1| hypothetical protein ARALYDRAFT_490272 [Arabidopsis lyrata subsp. lyrata] gi|297320727|gb|EFH51149.1| hypothetical protein ARALYDRAFT_490272 [Arabidopsis lyrata subsp. lyrata]

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/304 (62%), Positives = 236/304 (77%), Gaps = 7/304 (2%)

Query: 439 ITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAV 498
            +++V+RS Q C I  LE++IEDAK NKK LF  MES+MN+MREVE+QE+ A++AK  A 
Sbjct: 263 FSSVVSRSTQGCNIVHLEQIIEDAKSNKKTLFTVMESIMNLMREVELQEKDAEKAKEDAS 322

Query: 499 RGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSL 558
           RGG D   K++ELK+ML HAKEANDM AGE+YGER+IL TE  EL+NRLL+LSEERDKSL
Sbjct: 323 RGGFDTLDKVEELKKMLEHAKEANDMDAGEVYGERSILTTEVNELENRLLNLSEERDKSL 382

Query: 559 AVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQA 618
           +VLDEMRE LE RLAAA +++  AE+EK EKE SAR + AEQE IMEKVVQESKLLQQ+A
Sbjct: 383 SVLDEMREVLEIRLAAALEIKNAAEQEKQEKEGSARMAFAEQEAIMEKVVQESKLLQQEA 442

Query: 619 EENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASS 678
           EENSKLREFLMD GR+VDSLQGEISVICQD+R LKEKFD RVPLS+S++SSQT+C LASS
Sbjct: 443 EENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSITSSQTSCKLASS 502

Query: 679 GSSMKSVASLVAEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFEN 738
            SSMK   SL+ E+ L +      + +     ++L + G     D  ++L ++GWD F+ 
Sbjct: 503 ASSMK---SLLLEKPLEASYETAEASSNNTSPKALVNEGK----DDRKELLEEGWDFFDK 555

Query: 739 ETEL 742
           ETEL
Sbjct: 556 ETEL 559

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440803|ref|XP_003590679.1| hypothetical protein MTR_1g072560 [Medicago truncatula] gi|355479727|gb|AES60930.1| hypothetical protein MTR_1g072560 [Medicago truncatula]

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/304 (62%), Positives = 239/304 (78%), Gaps = 5/304 (1%)

Query: 441 TIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRG 500
           T +++    C ID+LEE I++AK NKK LF +MES++N+MREVE QE+ A++A  AA  G
Sbjct: 370 TTLSKYNPACSIDMLEETIDEAKTNKKTLFSSMESLINLMREVEHQEKLAEQANIAATTG 429

Query: 501 GLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAV 560
           G DI  +++E + ML HAKEANDMHAGEIYGE+AILATE +ELQ+RL SLS ERD+SLA+
Sbjct: 430 GFDILDRVEEYQAMLVHAKEANDMHAGEIYGEKAILATELKELQSRLSSLSGERDESLAI 489

Query: 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEE 620
           LDEMR++LE+RLAAA+ +RK AE EK EKEESARA+L EQE +MEKVVQES+ LQQ+AEE
Sbjct: 490 LDEMRQSLESRLAAADMLRKAAELEKLEKEESARAALLEQEAMMEKVVQESRRLQQEAEE 549

Query: 621 NSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGS 680
           NSKLREFLMDRG+VVD+LQGEISVICQD+RLLKEKFD  +PLSKS ++SQT+CILASSGS
Sbjct: 550 NSKLREFLMDRGQVVDTLQGEISVICQDIRLLKEKFDANLPLSKSFTASQTSCILASSGS 609

Query: 681 SMKSVASLV-AEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENE 739
           S K+VAS V +E   +SE L+    AP V         +E+  +    L DDGWD+F+ +
Sbjct: 610 SHKTVASNVGSEHSDSSEVLKITQAAPIV----FNGGEEERSEEEHNALIDDGWDIFDKD 665

Query: 740 TELN 743
            EL+
Sbjct: 666 AELD 669

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440805|ref|XP_003590680.1| hypothetical protein MTR_1g072560 [Medicago truncatula] gi|355479728|gb|AES60931.1| hypothetical protein MTR_1g072560 [Medicago truncatula]

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 190/304 (62%), Positives = 239/304 (78%), Gaps = 5/304 (1%)

Query: 441 TIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRG 500
           T +++    C ID+LEE I++AK NKK LF +MES++N+MREVE QE+ A++A  AA  G
Sbjct: 94  TTLSKYNPACSIDMLEETIDEAKTNKKTLFSSMESLINLMREVEHQEKLAEQANIAATTG 153

Query: 501 GLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAV 560
           G DI  +++E + ML HAKEANDMHAGEIYGE+AILATE +ELQ+RL SLS ERD+SLA+
Sbjct: 154 GFDILDRVEEYQAMLVHAKEANDMHAGEIYGEKAILATELKELQSRLSSLSGERDESLAI 213

Query: 561 LDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEE 620
           LDEMR++LE+RLAAA+ +RK AE EK EKEESARA+L EQE +MEKVVQES+ LQQ+AEE
Sbjct: 214 LDEMRQSLESRLAAADMLRKAAELEKLEKEESARAALLEQEAMMEKVVQESRRLQQEAEE 273

Query: 621 NSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGS 680
           NSKLREFLMDRG+VVD+LQGEISVICQD+RLLKEKFD  +PLSKS ++SQT+CILASSGS
Sbjct: 274 NSKLREFLMDRGQVVDTLQGEISVICQDIRLLKEKFDANLPLSKSFTASQTSCILASSGS 333

Query: 681 SMKSVASLV-AEQDLTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENE 739
           S K+VAS V +E   +SE L+    AP V         +E+  +    L DDGWD+F+ +
Sbjct: 334 SHKTVASNVGSEHSDSSEVLKITQAAPIV----FNGGEEERSEEEHNALIDDGWDIFDKD 389

Query: 740 TELN 743
            EL+
Sbjct: 390 AELD 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502823|ref|XP_003520215.1| PREDICTED: uncharacterized protein LOC100789476 [Glycine max]

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/322 (55%), Positives = 238/322 (73%), Gaps = 2/322 (0%)

Query: 417 SDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESV 476
           S+L++   ++ +   ++EDD       ++   +CRIDLLEE+I++AK NKK LF +MES+
Sbjct: 280 SELVAGSSSTGDNTSDVEDDIGAKNAGSQYSHVCRIDLLEEIIDEAKTNKKMLFSSMESL 339

Query: 477 MNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAIL 536
           +N+MREVE+QE+AA++A   A  GG +I  +++E K M+  A EANDMH+GE+YGE+AIL
Sbjct: 340 INLMREVELQEKAAEQANMEAATGGSNILARIEEYKTMVVQANEANDMHSGEVYGEKAIL 399

Query: 537 ATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARAS 596
            TE +ELQ+RLL LS+ERD+SLA+LDE+R  LE RLAAAE++RK AE+ K EKEESAR +
Sbjct: 400 TTELKELQSRLLGLSDERDRSLAILDEIRHILEVRLAAAEELRKAAEQLKLEKEESARKA 459

Query: 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKF 656
           L EQE ++EKVV ES+ LQQ+AEENSKL+EFL+DRGRVVD LQGEISVICQD++LLKEKF
Sbjct: 460 LVEQERLVEKVVHESQRLQQEAEENSKLQEFLIDRGRVVDMLQGEISVICQDIKLLKEKF 519

Query: 657 DERVPLSKSVSSSQTTCILASSGSSMKSVASLVAEQDLTSETLEKMSPAPAVDVESLKSR 716
           D  +PLSKS +SSQT+C LASSGSS K++AS    +   S  + K S   +++  S KS 
Sbjct: 520 DANLPLSKSFTSSQTSCKLASSGSSHKTLASDAGSEHSESSEIRKTSRTASIESLSSKSG 579

Query: 717 GD--EKIGDFWRQLSDDGWDLF 736
            D  EK       L DDGW + 
Sbjct: 580 HDEEEKSKADHNALLDDGWYIL 601

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186333|ref|NP_001190665.1| uncharacterized protein [Arabidopsis thaliana] gi|332656843|gb|AEE82243.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 235/311 (75%), Gaps = 15/311 (4%)

Query: 434 EDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEA 493
           E D  ++++  RS Q C +  LE++IEDAK NK+ LF  MES+MN+MREVE+QE+ A++A
Sbjct: 259 ELDGAVSSVGNRSTQGCNMVHLEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKA 318

Query: 494 KAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEE 553
           K  A  GG D   K++ELK+ML HAKEANDM AGE+YGER+IL TE  EL+NRL+SLSEE
Sbjct: 319 KEDASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEE 378

Query: 554 RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL 613
           RD SL+VLDEMR  LE RLA A  ++  AE+EK EKE SAR + AEQE IME+VVQESKL
Sbjct: 379 RDNSLSVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAIMERVVQESKL 438

Query: 614 LQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTC 673
           LQQ+AEENSKLREFLMD GR+VDSLQGEISVICQD+R LKEKFD RVPLS+S+SSSQT+C
Sbjct: 439 LQQEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSISSSQTSC 498

Query: 674 ILASSGSSMKSVASLVAEQDLTSETLEKM--SPAPAVDVESLKSRGDEKIGDFWRQLSDD 731
            LASS SSMKS+        LT + LE    +P  + + +S K+  +E+     ++L DD
Sbjct: 499 KLASSASSMKSL--------LTEKPLEASYETPEASSNNKSPKASVNER-----KELLDD 545

Query: 732 GWDLFENETEL 742
           GWD F+ ETEL
Sbjct: 546 GWDFFDKETEL 556

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328259|ref|NP_192197.2| uncharacterized protein [Arabidopsis thaliana] gi|18377666|gb|AAL66983.1| unknown protein [Arabidopsis thaliana] gi|20465977|gb|AAM20210.1| unknown protein [Arabidopsis thaliana] gi|332656842|gb|AEE82242.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 235/311 (75%), Gaps = 15/311 (4%)

Query: 434 EDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEA 493
           E D  ++++  RS Q C +  LE++IEDAK NK+ LF  MES+MN+MREVE+QE+ A++A
Sbjct: 255 ELDGAVSSVGNRSTQGCNMVHLEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKA 314

Query: 494 KAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEE 553
           K  A  GG D   K++ELK+ML HAKEANDM AGE+YGER+IL TE  EL+NRL+SLSEE
Sbjct: 315 KEDASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEE 374

Query: 554 RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL 613
           RD SL+VLDEMR  LE RLA A  ++  AE+EK EKE SAR + AEQE IME+VVQESKL
Sbjct: 375 RDNSLSVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAIMERVVQESKL 434

Query: 614 LQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTC 673
           LQQ+AEENSKLREFLMD GR+VDSLQGEISVICQD+R LKEKFD RVPLS+S+SSSQT+C
Sbjct: 435 LQQEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSISSSQTSC 494

Query: 674 ILASSGSSMKSVASLVAEQDLTSETLEKM--SPAPAVDVESLKSRGDEKIGDFWRQLSDD 731
            LASS SSMKS+        LT + LE    +P  + + +S K+  +E+     ++L DD
Sbjct: 495 KLASSASSMKSL--------LTEKPLEASYETPEASSNNKSPKASVNER-----KELLDD 541

Query: 732 GWDLFENETEL 742
           GWD F+ ETEL
Sbjct: 542 GWDFFDKETEL 552

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4263515|gb|AAD15341.1| hypothetical protein [Arabidopsis thaliana] gi|7269773|emb|CAB77773.1| hypothetical protein [Arabidopsis thaliana]

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 234/309 (75%), Gaps = 15/309 (4%)

Query: 436 DSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA 495
           D  ++++  RS Q C +  LE++IEDAK NK+ LF  MES+MN+MREVE+QE+ A++AK 
Sbjct: 244 DGAVSSVGNRSTQGCNMVHLEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKAKE 303

Query: 496 AAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERD 555
            A  GG D   K++ELK+ML HAKEANDM AGE+YGER+IL TE  EL+NRL+SLSEERD
Sbjct: 304 DASIGGFDTLDKVEELKKMLEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEERD 363

Query: 556 KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQ 615
            SL+VLDEMR  LE RLA A  ++  AE+EK EKE SAR + AEQE IME+VVQESKLLQ
Sbjct: 364 NSLSVLDEMRVDLEIRLATALGIKNAAEQEKQEKEGSARKAFAEQEAIMERVVQESKLLQ 423

Query: 616 QQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCIL 675
           Q+AEENSKLREFLMD GR+VDSLQGEISVICQD+R LKEKFD RVPLS+S+SSSQT+C L
Sbjct: 424 QEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHLKEKFDNRVPLSQSISSSQTSCKL 483

Query: 676 ASSGSSMKSVASLVAEQDLTSETLEKM--SPAPAVDVESLKSRGDEKIGDFWRQLSDDGW 733
           ASS SSMKS+        LT + LE    +P  + + +S K+  +E+     ++L DDGW
Sbjct: 484 ASSASSMKSL--------LTEKPLEASYETPEASSNNKSPKASVNER-----KELLDDGW 530

Query: 734 DLFENETEL 742
           D F+ ETEL
Sbjct: 531 DFFDKETEL 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584702|ref|XP_002533072.1| conserved hypothetical protein [Ricinus communis] gi|223527136|gb|EEF29311.1| conserved hypothetical protein [Ricinus communis]

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 244/306 (79%), Gaps = 17/306 (5%)

Query: 448 QICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVK 507
           Q  +ID LE+++E A++NK+ LF +MES+MNMMR+VE+QE+AA++AK  A   GLDI  K
Sbjct: 296 QDIKIDFLEDIVEAARHNKRTLFLSMESIMNMMRKVELQEKAAEDAKEEASSAGLDILTK 355

Query: 508 MDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRET 567
            +ELKQML HAK+ANDMHAGE+YGERAILATE RELQ RLLSLS+ERDK+LA++DEM ++
Sbjct: 356 ANELKQMLEHAKDANDMHAGEVYGERAILATEVRELQARLLSLSDERDKALAIIDEMHQS 415

Query: 568 LEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREF 627
           LE RLAAAE+++K AE++K E+EE+AR +LAEQE IM +VVQESK++QQ+A+ENSKLREF
Sbjct: 416 LEERLAAAEELKKAAEKQKLEQEEAARNALAEQEAIMGQVVQESKIIQQEADENSKLREF 475

Query: 628 LMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTTCILASSGSSMKSVAS 687
           LMDRGRVVD+LQGEISVICQDVRLLKE+FDER+PLSKS+SSSQT+CILASSGSS++S+A+
Sbjct: 476 LMDRGRVVDTLQGEISVICQDVRLLKERFDERIPLSKSISSSQTSCILASSGSSIRSIAT 535

Query: 688 -LVAEQDLTSETLEKMSPAPA---------------VDVESLKSRGDEKIGDFWRQLSDD 731
            LV E   TS++L+  S  P+               +D  S KS   E+  +     SDD
Sbjct: 536 DLVPEPRETSKSLKDRSLTPSSIDGRSPTSPTTSSFIDGRSPKSGLKEERTN-GEVASDD 594

Query: 732 GWDLFE 737
            W++FE
Sbjct: 595 DWEIFE 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	747
TAIR|locus:2014540	571	AT1G03290 "AT1G03290" [Arabido	0.504	0.660	0.446	3.9e-87
TAIR|locus:2177649	344	AT5G64980 "AT5G64980" [Arabido	0.069	0.151	0.557	3e-08
CGD|CAL0003874	1404	PGA55 [Candida albicans (taxid	0.831	0.442	0.178	1.2e-06
UNIPROTKB|Q59SG9	1404	PGA55 "Flocculin-like protein"	0.831	0.442	0.178	1.2e-06
DICTYBASE|DDB_G0268640	784	DDB_G0268640 "unknown" [Dictyo	0.420	0.400	0.216	0.00049

TAIR|locus:2014540 AT1G03290 "AT1G03290" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 182/408 (44%), Positives = 228/408 (55%)

Query:   342 LDCPLEVENSVAQLVPSSVQEHTSNVPES-GFQL------EVGSSLPSSVQQHTSDVSES 394
             LD P +   SV  L      +  SN  E  GF +         S L  S    T   ++ 
Sbjct:   182 LDVPEDDIASVVSLFSLDNVKLASNFWEDLGFDITWNQAENAVSKLVDSTPGDTMTTTQQ 241

Query:   395 GFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRIDL 454
             G   EVG  ST      D   +  L S+     NG   I D  + +T       +C +D 
Sbjct:   242 GSCFEVGHGSTN---LVDETSNRSLFSE-----NGDTEIGDAFSTST------HVCSVDQ 287

Query:   455 LEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERXXXXXXXXXVRGGLDIFVKMDELKQM 514
             LE++IEDAK NKKNL   ME+V N+MREVE++E+          RGGLD   K++ELK+M
Sbjct:   288 LEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARGGLDTLQKVEELKKM 347

Query:   515 LAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDXXXXXXXXXXXX 574
             L HAKEANDMHAGE+YGE++ILATE +EL+NRLL+LSEER+KSLA+LD            
Sbjct:   348 LEHAKEANDMHAGEVYGEKSILATEVKELENRLLNLSEERNKSLAILDEMRGSLEIRLAA 407

Query:   575 XXXXXXXXXXXXXXXXXXXXXSLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRV 634
                                  +LAEQE  MEKVVQESKLLQQ+AEENSKLR+FLMDRG++
Sbjct:   408 ALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENSKLRDFLMDRGQI 467

Query:   635 VDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTT-CILAXXXXXXXXXXXLVAEQD 693
             VD+LQGEISVICQDV+LLKEKF+ RVPL+KS+SSS T+ C  +            +    
Sbjct:   468 VDTLQGEISVICQDVKLLKEKFENRVPLTKSISSSFTSSCGSSMKSLVLENPSERLNGVT 527

Query:   694 LTSETLEKMSPAPAVDVESLKSRGDEKIGDFWRQLSDDGWDLFENETE 741
              TS    K   A A  +        EK  D  R L +DGWD+F+ ETE
Sbjct:   528 ETSNN-NKFPEAAAFFMNK------EK--DDCRDLLEDGWDIFDKETE 566

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2177649 AT5G64980 "AT5G64980" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query:     1 MGFNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILPYWSEKS 52
             MGF +VY+ L E+FPQID ++L+ VAIEH  DAD AA++V++EI P+ S  S
Sbjct:     1 MGFRSVYQSLTELFPQIDPKILRGVAIEHQHDADEAASVVISEIFPFSSPNS 52

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)]

 Score = 151 (58.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 118/662 (17%), Positives = 248/662 (37%)

Query:    27 IEHSKDADAAATIVLT-EILPYWSEKSLTSSSVISNRTAXXXXXXXXXXXXXXXXXXXEI 85
             +  S +  +++ +  + EI+   SE S +SS V+S+ ++                   E+
Sbjct:   228 VSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSS-SSEVSSSSEVVSSSSEVSSSSEV 286

Query:    86 AXXXXXXXLNTFRRRRNRSQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASA-- 143
             +       +++     + S+ SS  Q  I++    S+      +S  VS    +++S+  
Sbjct:   287 SSSSE---VSSSSEVSSSSEVSSSSQ-VISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEV 342

Query:   144 VSQSYDPNDSSGLLYGNP--ESEEVILLGKTPESVVEVGSDKASTVMPNE--CGNDDLGG 199
             VS S + + SS +   +    S +V    +   S  EV S  +  V  +     + ++  
Sbjct:   343 VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVS 402

Query:   200 ACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDIS---IFGISQE 256
             + +   S+  VS      ++V   SE +      +S+ +  + ++++  S   +   S+ 
Sbjct:   403 SSSEVSSSSEVSSS----SEVSSSSEVSS--SSEVSSSSQVISSSEVVSSSSEVSSSSEV 456

Query:   257 VGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAW 316
             V S  +     E S +  V SS Q  +S        +V S  + +V  ++ V++ S    
Sbjct:   457 VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVS 516

Query:   317 TDFDGPGATDIGVSN--CGISQEVGSC--LDCPLEVENSVAQLVPSSVQEHTSNVPESGF 372
             +  +   ++++  S+     SQ + S   +    EV +S +++V SS +  +S+   S  
Sbjct:   517 SSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSS 576

Query:   373 QLEVGSSLPSSVQQHTSDVSESGFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCN 432
               EV SS  S V   +S+VS S     + SS    S     + SS++ S  E S + + +
Sbjct:   577 S-EVSSS--SEVSS-SSEVSSSS--QVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVS 630

Query:   433 IEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERXXXX 492
                + + ++ V+ S Q+       E++  +     +  + + S   +    E+       
Sbjct:   631 SSSEVSSSSEVSSSSQVTSSS---EIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEV 687

Query:   493 XXXXXVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552
                  V    ++        Q+++ ++  +   + E+    + +++ +    +  +S S 
Sbjct:   688 SSSSEVSSSSEV----SSSSQVISSSEVVSS--SSEVVSSSSEVSSSSEVSSSSEVSSSS 741

Query:   553 ERDKSLAVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAEQEVIMEKVVQESK 612
             E   S  V                                   S + + +     V  S 
Sbjct:   742 EVSSSSEVSSSSEVTSSSSEIISSSSSSEVTSSSEVSSSSQATSSSSEIISSSSKVSSSS 801

Query:   613 LLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTT 672
              +   +E  S   E       VV S      V+      +     E +  S  V+SS T 
Sbjct:   802 EITSSSECISSTSEVNSSSSEVVSSSSASSEVVSSSTECISSS-SEAISSSSQVTSSSTE 860

Query:   673 CI 674
             CI
Sbjct:   861 CI 862

GO:0009986 "cell surface" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 151 (58.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 118/662 (17%), Positives = 248/662 (37%)

Query:    27 IEHSKDADAAATIVLT-EILPYWSEKSLTSSSVISNRTAXXXXXXXXXXXXXXXXXXXEI 85
             +  S +  +++ +  + EI+   SE S +SS V+S+ ++                   E+
Sbjct:   228 VSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSS-SSEVSSSSEVVSSSSEVSSSSEV 286

Query:    86 AXXXXXXXLNTFRRRRNRSQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASA-- 143
             +       +++     + S+ SS  Q  I++    S+      +S  VS    +++S+  
Sbjct:   287 SSSSE---VSSSSEVSSSSEVSSSSQ-VISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEV 342

Query:   144 VSQSYDPNDSSGLLYGNP--ESEEVILLGKTPESVVEVGSDKASTVMPNE--CGNDDLGG 199
             VS S + + SS +   +    S +V    +   S  EV S  +  V  +     + ++  
Sbjct:   343 VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVS 402

Query:   200 ACANTESNGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDIS---IFGISQE 256
             + +   S+  VS      ++V   SE +      +S+ +  + ++++  S   +   S+ 
Sbjct:   403 SSSEVSSSSEVSSS----SEVSSSSEVSS--SSEVSSSSQVISSSEVVSSSSEVSSSSEV 456

Query:   257 VGSCFDCPLKIENSVAQFVPSSVQERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAW 316
             V S  +     E S +  V SS Q  +S        +V S  + +V  ++ V++ S    
Sbjct:   457 VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVS 516

Query:   317 TDFDGPGATDIGVSN--CGISQEVGSC--LDCPLEVENSVAQLVPSSVQEHTSNVPESGF 372
             +  +   ++++  S+     SQ + S   +    EV +S +++V SS +  +S+   S  
Sbjct:   517 SSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSS 576

Query:   373 QLEVGSSLPSSVQQHTSDVSESGFHLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCN 432
               EV SS  S V   +S+VS S     + SS    S     + SS++ S  E S + + +
Sbjct:   577 S-EVSSS--SEVSS-SSEVSSSS--QVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVS 630

Query:   433 IEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERXXXX 492
                + + ++ V+ S Q+       E++  +     +  + + S   +    E+       
Sbjct:   631 SSSEVSSSSEVSSSSQVTSSS---EIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEV 687

Query:   493 XXXXXVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE 552
                  V    ++        Q+++ ++  +   + E+    + +++ +    +  +S S 
Sbjct:   688 SSSSEVSSSSEV----SSSSQVISSSEVVSS--SSEVVSSSSEVSSSSEVSSSSEVSSSS 741

Query:   553 ERDKSLAVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAEQEVIMEKVVQESK 612
             E   S  V                                   S + + +     V  S 
Sbjct:   742 EVSSSSEVSSSSEVTSSSSEIISSSSSSEVTSSSEVSSSSQATSSSSEIISSSSKVSSSS 801

Query:   613 LLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPLSKSVSSSQTT 672
              +   +E  S   E       VV S      V+      +     E +  S  V+SS T 
Sbjct:   802 EITSSSECISSTSEVNSSSSEVVSSSSASSEVVSSSTECISSS-SEAISSSSQVTSSSTE 860

Query:   673 CI 674
             CI
Sbjct:   861 CI 862

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=ISS

DICTYBASE|DDB_G0268640 DDB_G0268640 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 0.00049, P = 0.00049
 Identities = 74/342 (21%), Positives = 141/342 (41%)

Query:   104 SQPSSLEQGSITTGYATSTDLPCAHNSDSVSLDKALNASAVSQSYDPNDSSGLLYGNPES 163
             S  S+ E  S ++  A+      +H++   S   + + S V  S   + SS +  G+  S
Sbjct:    70 SSHSTSEVSSDSSNSASKVPTSSSHSASEASTGSSHSESEVP-SGSTHSSSEVSTGSSNS 128

Query:   164 EEVILLGKTPE-SVVEVGSDKASTVMPNECGNDDLGGACANTESNGVVSVDKGQYT-DVK 221
                + +G +   S V  GS  +++ +P+   +     +  ++ S   VS+     T +V 
Sbjct:   129 ASEVSIGSSHSTSEVSTGSSHSTSEVPSGSSHSTSEVSTGSSHSASEVSIGSSHSTSEVP 188

Query:   222 FESEHTPIVMPTLSAHANGLGATDIDISIFGI-SQEVGSCFDCPLKIENSVAQFVPSSVQ 280
               S H+   +PT S+H++    T    S   + +    S  + P    +S ++ VP+   
Sbjct:   189 TGSSHSSSEVPTGSSHSSSEVPTGSSHSSSEVPTGSSHSSSEVPTGSSHSASE-VPTGSS 247

Query:   281 ERASDVCQYRDVKVESEHTPIVMPANAVANGSLTAWTDFDGPGATDIGVSNCGISQEVGS 340
               AS+V        +S H+   +P+ +  + S    T      A+++   +   S EV  
Sbjct:   248 NSASEVPS------DSSHSASEVPSGSSHSASEVP-TG-SSHSASEVPTGSSHSSSEV-- 297

Query:   341 CLDCPLEVENSVAQLVPSSVQEHTSNVP----ESGFQLEVGSSLPSSVQQHTSDVSESGF 396
                 P +  NS ++ VP+      S VP     S  ++  GSS  +S    +S +S S  
Sbjct:   298 ----PSDSSNSASE-VPTGSSHSNSEVPTGSSHSASEVSTGSSHSASEVSTSSSLSAS-- 350

Query:   397 HLEVGSSSTTDSGKPDANGSSDLMSKQENSVNGKCNIEDDST 438
               EV + S+  + +  A  S+        S + K  + + S+
Sbjct:   351 --EVSAGSSHSASEVSAGSSNSASEVPTGSSHSKSEVPNGSS 390


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.127   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      747       668   0.00099  120 3  11 23  0.48    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  317 KB (2161 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  64.47u 0.11s 64.58t   Elapsed:  00:00:03
  Total cpu time:  64.48u 0.11s 64.59t   Elapsed:  00:00:03
  Start:  Mon May 20 17:51:25 2013   End:  Mon May 20 17:51:28 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140857 hypothetical protein (550 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	747
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 451 RIDLLEEMIEDAKYNKKNLFKAMESVMN--MMREVEIQERAAKEAKAAAVRGGLDIFVKM 508
            I LL E +E+ +   + L + +E +       + E++ER     +   +   L+     
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE--EAK 360

Query: 509 DELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETL 568
           +EL++ L+   E  +     +  E A L  E  E++N L  L  E +     L+ + E L
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 569 EARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFL 628
           E      +++  E EE + E EE     L E E  +E++      L++   E ++L+E L
Sbjct: 421 EDLKEELKELEAELEELQTELEE-LNEELEELEEQLEELRDR---LKELERELAELQEEL 476

Query: 629 MDRGRVVDSLQGEISVI 645
               + + SL+  +  +
Sbjct: 477 QRLEKELSSLEARLDRL 493

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 537 ATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARAS 596
           A +  E ++R+  L E R+    ++ E RET+E +   AE++R+ A E + E EE  R +
Sbjct: 501 AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE-KREA 559

Query: 597 LAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEK 655
            AE E   E+  +E   L  +  E  +  E L    R+   L   I+    ++  L+EK
Sbjct: 560 AAEAEEEAEEAREEVAELNSKLAELKERIESL---ERIRTLLA-AIADAEDEIERLREK 614

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 48/219 (21%), Positives = 97/219 (44%), Gaps = 18/219 (8%)

Query: 436 DSTITTIVTRSGQIC-RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVE--IQERAAKE 492
              +  +     Q+  R++ LEE +E+ +   + L + +E +   +  +E  + +   + 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 493 AKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGE---RAILATEARELQNRLLS 549
            +    R  L    +++EL++ L  A+   D    E+      R  L  E  EL+  +  
Sbjct: 782 EELEEKRQALQE--ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 550 LSEERD---KSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEK 606
           L E+ D   + L  L++  E L+  L   E  ++E E+E  ++ E  +  L E+   + +
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE-LKELEEEKEELEEE---LRE 895

Query: 607 VVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVI 645
           +  E   L +  EE  KLRE L +    ++ L+ E+  +
Sbjct: 896 LESE---LAELKEEIEKLRERLEELEAKLERLEVELPEL 931

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 44/242 (18%)

Query: 451  RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDE 510
             +  L+E IE+ +  ++ L + +E       E+E +   A+    A  R    +  + + 
Sbjct: 773  ALAKLKEEIEELEEKRQALQEELE-------ELEEELEEAERRLDALERELESLEQRRER 825

Query: 511  LKQMLAHAKEANDMHAGEIYGERA---ILATEARELQNRLLSLSEERD---KSLAVLDEM 564
            L+Q +   +E  +    ++         L  E  EL+  L  L  E++     L  L+E 
Sbjct: 826  LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885

Query: 565  RETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEEN--- 621
            +E LE  L   E    E +EE     E  R  L E E  +E++  E   L+++ EE    
Sbjct: 886  KEELEEELRELESELAELKEEI----EKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 622  ----------SKLREFLMDRGRV--------------VDSLQGEISVICQDVRLLKEKFD 657
                       +L E +   G V               + L+ +   + +    L E  +
Sbjct: 942  TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIE 1001

Query: 658  ER 659
            E 
Sbjct: 1002 EL 1003

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 455 LEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVR---GGLDIFVKMDEL 511
           LEE+ E+    ++ L +  E +    +E+E  +   +E +          L++  +++EL
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300

Query: 512 KQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRET---L 568
           +  ++  +E       E+  E   L     EL+ ++ +L EE ++   +L+E+ +    L
Sbjct: 301 EGEISLLRE----RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 569 EARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFL 628
           E      E+      EE  E  E+ R  LAE E  + ++  E + L+++ E   +  E L
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416

Query: 629 MDRGRVVDSLQGEISVICQDVRLLKEKFDERV 660
            +R   +     E+    ++++   E+ +E +
Sbjct: 417 SERLEDLKEELKELEAELEELQTELEELNEEL 448

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 22/224 (9%)

Query: 442 IVTRSGQICRID-------LLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK 494
           IVT  G +             +      K   K L + +  +   + ++E + ++ K   
Sbjct: 638 IVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNEL 697

Query: 495 AAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEER 554
            +           ++EL++ L    E  +    E+  E A L  E  +LQ+RL  L EE 
Sbjct: 698 RSLED-------LLEELRRQL----EELERQLEELKRELAALEEELEQLQSRLEELEEEL 746

Query: 555 DKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLL 614
           ++    L+E  E L+ RL   E+  +  EE   + +E       +++ + E++ +  + L
Sbjct: 747 EE----LEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802

Query: 615 QQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658
           ++       L   L    +  + L+ EI  + +++  L+EK DE
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 17/232 (7%)

Query: 481 REVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEA 540
            ++E  E    E + A      ++  +++EL++ L   ++  +  + +I   R  LA   
Sbjct: 684 EKIEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 541 RELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQ 600
            E   +L     +  K L  L+   E LE RL  AE+   EAE E  E E        E 
Sbjct: 740 AE-VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 601 EVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERV 660
           + + E + +    L    EE + LRE L    R + + +  +  +      ++E  ++  
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL---EEQIEELSEDIE 855

Query: 661 PLSKSVSSSQTTC---------ILASSGSSMKSVASLVAEQDLTSETLEKMS 703
            L+  +   +            +L    S  +++A L +E +  SE L ++ 
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 508 MDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRE- 566
           ++   Q L   ++       E+  +   L    R LQ RL  +++ERD   A+L+   + 
Sbjct: 369 LETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKE 428

Query: 567 --------TLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVV-----QESKL 613
                    L  RL  AED+ ++ +    + E   + S  E++V  +K        E KL
Sbjct: 429 LTETSVSGQLMKRLEEAEDLVQKVQSHLAKME--NQLSELEEDVGQQKDRNNTLETEIKL 486

Query: 614 LQQQAEENSKLREFLMDRGRVV----DSLQGEISVICQDVRLLKEKFDER 659
           L++Q   N +L  F+ +    +    ++L+ E   + Q+  LL+ K +  
Sbjct: 487 LKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLEHL 536

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 36/228 (15%)

Query: 433 IEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMN-MMREVEIQERAAK 491
           +E D +   +V    QI  +D  E   ++     K + + +E +   + R   I+E   K
Sbjct: 141 LESDESREKVVR---QILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELI-K 196

Query: 492 EAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLS 551
           E +               EL+++L    E +     E+  E   L  E +EL+     + 
Sbjct: 197 EKE--------------KELEEVLREINEISSELP-ELREELEKLEKEVKELEELKEEIE 241

Query: 552 EERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQES 611
           E   +  ++    R  LE ++   E+  +E ++E  E               +E+ V+E 
Sbjct: 242 ELEKELESLEGSKR-KLEEKIRELEERIEELKKEIEE---------------LEEKVKEL 285

Query: 612 KLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDER 659
           K L+++AEE  KL EF  +    +  ++  +S + +++  ++E+  E 
Sbjct: 286 KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDE 510
           +++ LE  +++       L + +E +   +  +E +    +           ++  +++ 
Sbjct: 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

Query: 511 LKQMLAHAKEANDMHAGEIY----------GERAILATEARELQNRLLSL--------SE 552
           L+  +A  +        EI             R  L  E  EL  +L            E
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443

Query: 553 ERDKSLAVLDEMRETLEARLAAAEDMRKEAEEE---KFEKEESARASLAEQEVIMEKVVQ 609
           E ++ L  L E  E LE  L    +  +EAE+       +    +A L   E + E +  
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503

Query: 610 ESKLLQQQAEENSKLREFLMDRGRVVDSLQ 639
            S+ ++   +  S L   L   G + + + 
Sbjct: 504 FSEGVKALLKNQSGLSGIL---GVLSELIS 530

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 35/190 (18%)

Query: 471 KAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKM-------------DELKQMLAH 517
           + M+ ++  ++E +  E   K  K   +R  +D F +              +E  ++L +
Sbjct: 99  EQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEY 158

Query: 518 AKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETL--------- 568
            +E       E   ER     E      RL +  EE +     LDE+R  L         
Sbjct: 159 QRE-KAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKE 217

Query: 569 --------EARLAAAEDMRKE----AEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQ 616
                   E R    +++++      EE++   +E      AE+E ++EK  ++ +L Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277

Query: 617 QAEENSKLRE 626
            AE+    R 
Sbjct: 278 NAEKRRMKRL 287

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 25/181 (13%)

Query: 456 EEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQML 515
           EE  E+ + ++      ME     ++ +  +E   ++ K     G      +    +Q+ 
Sbjct: 35  EEKEEERRIDEM-----MEE--ERLKALAEEEERERKRKEERREG------RAVLQEQIE 81

Query: 516 AHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAA 575
              K   + +   +     +     R  +       E+R+K   + +E+ E  E R+   
Sbjct: 82  EREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERK 141

Query: 576 EDMRKEAEEE----------KFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLR 625
           E+ ++   EE          K E+EE   A   E++   E+ V   +L  QQ E   +  
Sbjct: 142 EEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVA--RLRAQQEEAEDERE 199

Query: 626 E 626
           E
Sbjct: 200 E 200

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARA 595
           L  +  +   RL ++ EE+D+  A ++E  + LE++L      + EA + +F +EE    
Sbjct: 393 LERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQ----QLEAGKLEFNEEEYELE 448

Query: 596 S-LAEQEVIMEKVVQESKLLQQQAEENSKLRE 626
             L   +  ++      + L+Q    +  L +
Sbjct: 449 LRLGRLKQRLDSATATPEELEQLEINDEALEK 480

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 484 EIQERAAKEAKAAAVRGGLD-IFVKMDELKQMLAHAKEAND---MHAGEIYGERAILATE 539
           EI+    +  +A   R   D +  + +E ++ L   +   +       E   ER  LA E
Sbjct: 221 EIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280

Query: 540 ARELQNRLLSLSEERDKSLAVL---DEMRETLEARLAAAEDMRKEAEEEKFEKEESARAS 596
            R+L+ RL  L EERD  LA     D   E +EAR    ED  +E  +   E   +A+A 
Sbjct: 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAH 340

Query: 597 LAEQEVIMEKVVQ---ESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLK 653
             E E + E        ++ L+++A E   L   L +    V+  + EI  + +++  L+
Sbjct: 341 NEEAESLREDADDLEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELR 397

Query: 654 EKFD 657
           E+F 
Sbjct: 398 ERFG 401

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	747
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	96.45
smart00546	43	CUE Domain that may be involved in binding ubiquit	96.34
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.06
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.93
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.42
PRK11637	428	AmiB activator; Provisional	94.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.88
cd08915	342	V_Alix_like Protein-interacting V-domain of mammal	94.66
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.66
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	93.45
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.31
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.77
cd09235	339	V_Alix Middle V-domain of mammalian Alix and relat	92.51
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.49
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	92.23
cd09234	337	V_HD-PTP_like Protein-interacting V-domain of mamm	91.44
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.29
PHA02562	562	46 endonuclease subunit; Provisional	91.06
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	90.76
PRK11281	1113	hypothetical protein; Provisional	90.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.35
PRK02224	880	chromosome segregation protein; Provisional	89.77
KOG0996	1293	consensus Structural maintenance of chromosome pro	89.55
PRK02224	880	chromosome segregation protein; Provisional	88.93
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.82
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	88.46
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	88.27
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.61
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	86.42
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.4
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	86.31
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.99
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	85.41
COG1322	448	Predicted nuclease of restriction endonuclease-lik	84.14
KOG4673	961	consensus Transcription factor TMF, TATA element m	84.02
PHA02562	562	46 endonuclease subunit; Provisional	83.51
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	81.91
cd09238	339	V_Alix_like_1 Protein-interacting V-domain of an u	81.81
PRK10929	1109	putative mechanosensitive channel protein; Provisi	81.76
PRK04778	569	septation ring formation regulator EzrA; Provision	81.69
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.63
PLN02939	977	transferase, transferring glycosyl groups	81.55
PRK04863	1486	mukB cell division protein MukB; Provisional	81.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.11
PRK06568	154	F0F1 ATP synthase subunit B; Validated	80.09

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=96.45  E-value=0.0042  Score=46.77  Aligned_cols=38  Identities=32%  Similarity=0.524  Sum_probs=33.5

Q ss_pred             HHHHHHHhhcccchHHHHHHHHhhhccchhhhhhHhhh
Q 004517            5 AVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT   42 (747)
Q Consensus         5 ~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~   42 (747)
                      +--+.|++|||+++...++++-.+|..|+|+|+..+|.
T Consensus         3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            34578999999999999999999999999999988774

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=96.34  E-value=0.0052  Score=46.26  Aligned_cols=39  Identities=26%  Similarity=0.460  Sum_probs=35.3

Q ss_pred             HHHHHHHHhhcccchHHHHHHHHhhhccchhhhhhHhhh
Q 004517            4 NAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT   42 (747)
Q Consensus         4 k~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~   42 (747)
                      .+....|++|||++|...++.+-..|..|++.|+..+|.
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~   41 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE   41 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            356788999999999999999999999999999988774

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.06  E-value=0.76  Score=55.82  Aligned_cols=188  Identities=20%  Similarity=0.256  Sum_probs=101.3

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHhHHHHHHHHHHHHHh-ccccc
Q 004517          451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGG---LDIFVKMDELKQMLAHAKEA-NDMHA  526 (747)
Q Consensus       451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG---~DILaKVEELKeML~~AKEA-NDmhA  526 (747)
                      +.+.|...-..|++.-+.+...+|.|.+-+++.+.+.-+|+.|.+.|..-=   .+.|.||++   -+.-|.+. |.  |
T Consensus      1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~---~t~~aE~~~~~--a 1617 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE---ETAAAEKLATS--A 1617 (1758)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHH--H
Confidence            346666666777777788889999999999999988888888888876533   334444443   22222111 22  2


Q ss_pred             hhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHH
Q 004517          527 GEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEM-------RETLEARLAAAEDMRKEAEEEKFEKE----ESARA  595 (747)
Q Consensus       527 GEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEM-------r~TLEaRLAaAeeEr~AAEeeKieKE----esArk  595 (747)
                      ++-.+|   |.+-..+|+....+.|.+-..+....+-.       ++.|+ -|..+-+....--+.|.+..    +.|.+
T Consensus      1618 ~q~~~e---L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~~~r~~g~~~ar~rAe~ 1693 (1758)
T KOG0994|consen 1618 TQQLGE---LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLLEKRMEGSQAARERAEQ 1693 (1758)
T ss_pred             HHHHHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            222222   55666666666666666655554433322       11121 11111111111111111211    22344


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHH
Q 004517          596 SLAEQEVIMEKVVQESKLL---QQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVR  650 (747)
Q Consensus       596 ~L~EQEalM~kVvEESrkL---qqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~  650 (747)
                      ++.|-+.|+......-++|   +-+-++|   ...|+|+-.+++-|-++|-.+-.||.
T Consensus      1694 L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~---~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQANEKLDRLKDLELEYLRN---EQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            5555555555544333333   2223333   24688888888888888888877764

>TIGR00606 rad50 rad50

Probab=95.93  E-value=1.4  Score=52.86  Aligned_cols=115  Identities=14%  Similarity=0.066  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhcccc---chhhhccchhHHHHHHHHH
Q 004517          468 NLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMH---AGEIYGERAILATEARELQ  544 (747)
Q Consensus       468 ~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmh---AGEVyGEKAILaTEArELQ  544 (747)
                      .|+..+..|..+.++++-.+..-+.-..+....|.+  ..+++|..-+......-++.   -..+-.++.-+..+.+.||
T Consensus       786 sL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq  863 (1311)
T TIGR00606       786 VCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK  863 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555554444444444444443  14444544444333332221   1224556667778888888


Q ss_pred             HHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          545 NRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEE  585 (747)
Q Consensus       545 SRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEee  585 (747)
                      .++..+.+++.+.-..+. .|..|+.+|..-..+......+
T Consensus       864 ~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~  903 (1311)
T TIGR00606       864 SKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIRE  903 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777776 7888888887776666555443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.42  E-value=1.9  Score=52.71  Aligned_cols=54  Identities=20%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------HhhcCcccccccchhhhhhhhHHHHHHHhccCccc
Q 004517          607 VVQESKLLQQQAEENSKLREF------LMDRGRVVDSLQGEISVICQDVRLLKEKFDERVPL  662 (747)
Q Consensus       607 VvEESrkLqqEAEENsKLREF------LMDRG~IVDsLQGEISVIceDV~~LKervD~rlpl  662 (747)
                      +.+|.++|-.+  .|.||..+      +.+.-+-++.++-|+..+-..|+.+-.-.-+++.+
T Consensus      1694 L~~eA~~Ll~~--a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv~~ 1753 (1758)
T KOG0994|consen 1694 LRTEAEKLLGQ--ANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINERVLY 1753 (1758)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Confidence            33344444333  35565543      34555677888888888888888777666666543

>PRK11637 AmiB activator; Provisional

Probab=94.91  E-value=6.2  Score=41.84  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=20.6

Q ss_pred             HHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          545 NRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRK  580 (747)
Q Consensus       545 SRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~  580 (747)
                      ..|..|+..|.+.+.-+..-+..|+.-.+..++.+.
T Consensus       159 ~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~  194 (428)
T PRK11637        159 AYFGYLNQARQETIAELKQTREELAAQKAELEEKQS  194 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666777766666666666654444443333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.88  E-value=8.1  Score=43.93  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=13.9

Q ss_pred             cccccCCCCcccceeeh-hcc
Q 004517          234 LSAHANGLGATDIDISI-FGI  253 (747)
Q Consensus       234 ls~~~~~~g~t~i~~~~-f~i  253 (747)
                      +---.||+|-|.|.+.| |.+
T Consensus        27 ~i~G~NGsGKS~ildAi~~~l   47 (1164)
T TIGR02169        27 VISGPNGSGKSNIGDAILFAL   47 (1164)
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            33445899999998866 433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains

Probab=94.66  E-value=2.5  Score=43.31  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcchhHHHhHHHHHHHHHHHHHhc
Q 004517          451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAA--------AVRGGLDIFVKMDELKQMLAHAKEAN  522 (747)
Q Consensus       451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~E--------As~aG~DILaKVEELKeML~~AKEAN  522 (747)
                      +++.|...+.+...-+..--..+..+..|+.+ |-.|-..-+++.-        +..+...+..++.+++.-|..|..++
T Consensus        71 g~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~-E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD  149 (342)
T cd08915          71 GLDNIEQSFKELSKLRQNVEELLQECEELLEE-EAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSD  149 (342)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35667777777776666666666777777743 3333333333331        45666789999999999999999998


Q ss_pred             cccchhhhc----------------------------cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 004517          523 DMHAGEIYG----------------------------ERAILATEARELQNRLLSLSEERDKSLAVLDEM  564 (747)
Q Consensus       523 DmhAGEVyG----------------------------EKAILaTEArELQSRL~~LSeERdkaLaIIDEM  564 (747)
                      ...-.-+-.                            +-.-.....+.+-..|..|..+|.+.+.-+.+.
T Consensus       150 ~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~  219 (342)
T cd08915         150 NEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIK  219 (342)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765544331                            112345567778888888888998876666444

This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.97  E-value=14  Score=41.86  Aligned_cols=15  Identities=27%  Similarity=0.257  Sum_probs=5.8

Q ss_pred             hhHHHHHHHHhhhhh
Q 004517          453 DLLEEMIEDAKYNKK  467 (747)
Q Consensus       453 esLE~~IsdaK~nK~  467 (747)
                      +.++.-+..++....
T Consensus       687 ~~l~~~l~~~~~~~~  701 (1179)
T TIGR02168       687 EELEEKIAELEKALA  701 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.66  E-value=13  Score=44.62  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=18.7

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 004517          451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMRE  482 (747)
Q Consensus       451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrE  482 (747)
                      .++.+..-+..++...+.|..-++.+.+.+.+
T Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  748 (1163)
T COG1196         717 QLEELKRELAALEEELEQLQSRLEELEEELEE  748 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555566666666666665555

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=93.45  E-value=8.6  Score=37.92  Aligned_cols=112  Identities=19%  Similarity=0.287  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchhHHHhHHHHHHHHHHHHHhcccc
Q 004517          452 IDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK------AAAVRGGLDIFVKMDELKQMLAHAKEANDMH  525 (747)
Q Consensus       452 IesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK------~EAs~aG~DILaKVEELKeML~~AKEANDmh  525 (747)
                      ++.|.+++.+........-+.+..+.+++.+-+...++-+.--      ..+......+..+++.++..|..|++.|...
T Consensus        24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~  103 (296)
T PF13949_consen   24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL  103 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7889999999999999988999999888877665555544432      2355667799999999999999999988764


Q ss_pred             chhhhccc----------------------------hhHHHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517          526 AGEIYGER----------------------------AILATEARELQNRLLSLSEERDKSLAVLDE  563 (747)
Q Consensus       526 AGEVyGEK----------------------------AILaTEArELQSRL~~LSeERdkaLaIIDE  563 (747)
                      -.-+-.=+                            .......++|-.+|..|..+|+..+.-|.+
T Consensus       104 ~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~  169 (296)
T PF13949_consen  104 RSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE  169 (296)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33221111                            123355678888889999999885544443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.31  E-value=13  Score=41.97  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004517          604 MEKVVQESKLLQQQAEENSKLREFLMDR  631 (747)
Q Consensus       604 M~kVvEESrkLqqEAEENsKLREFLMDR  631 (747)
                      +.....+-+.|+.|++-+.++-+.|+.|
T Consensus       371 ~~~~~~e~~~L~Re~~~~~~~Y~~ll~r  398 (754)
T TIGR01005       371 AGEQQVDLDALQRDAAAKRQLYESYLTN  398 (754)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344667789999999999988887765

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.77  E-value=22  Score=40.71  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             ccchhhhhhhhHHHHHHHhccCcc
Q 004517          638 LQGEISVICQDVRLLKEKFDERVP  661 (747)
Q Consensus       638 LQGEISVIceDV~~LKervD~rlp  661 (747)
                      |+-|---+.++|+.|..|+|..-.
T Consensus       436 l~~EkQeL~~yi~~Le~r~~~~~~  459 (546)
T PF07888_consen  436 LQEEKQELLEYIERLEQRLDKVAD  459 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            455666788999999999998643

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules

Probab=92.51  E-value=6.9  Score=40.78  Aligned_cols=109  Identities=13%  Similarity=0.233  Sum_probs=77.2

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcchhHHHhHHHHHHHHHHHHHhccc
Q 004517          451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEA------KAAAVRGGLDIFVKMDELKQMLAHAKEANDM  524 (747)
Q Consensus       451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqA------K~EAs~aG~DILaKVEELKeML~~AKEANDm  524 (747)
                      +++.|..++.+...-+..--..++.+..|+.+=+-..+..+.-      ...+......+..++.+++..|..|..++..
T Consensus        70 g~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~  149 (339)
T cd09235          70 GIQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKI  149 (339)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3789999999999999888888888888887654444443332      1244566778999999999999999998765


Q ss_pred             cchh---------hh--ccchh-----------------HHHHHHHHHHHHhhhHHHhhhHHH
Q 004517          525 HAGE---------IY--GERAI-----------------LATEARELQNRLLSLSEERDKSLA  559 (747)
Q Consensus       525 hAGE---------Vy--GEKAI-----------------LaTEArELQSRL~~LSeERdkaLa  559 (747)
                      ...-         ++  ++..+                 ...+.+.+-..|..|..||...+.
T Consensus       150 v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~  212 (339)
T cd09235         150 VREKYESHREGIELLSKPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVETIKAEREVIES  212 (339)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4332         22  21111                 245668888888888999988643

This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.49  E-value=25  Score=42.55  Aligned_cols=45  Identities=24%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             HHHHHHhhhHHHhhhHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Q 004517          542 ELQNRLLSLSEERDKSLAVLDEMRE----------------TLEARLAAAEDMRKEAEEEK  586 (747)
Q Consensus       542 ELQSRL~~LSeERdkaLaIIDEMr~----------------TLEaRLAaAeeEr~AAEeeK  586 (747)
                      +++.++..+++++.....-+.+++.                .++.|+..|++...++.++.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~  492 (1201)
T PF12128_consen  432 QSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAV  492 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666665555555543                34556666655555554443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=92.23  E-value=19  Score=42.44  Aligned_cols=206  Identities=20%  Similarity=0.244  Sum_probs=133.8

Q ss_pred             ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHH-hccccch
Q 004517          449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKE-ANDMHAG  527 (747)
Q Consensus       449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKE-ANDmhAG  527 (747)
                      -=||+-|.+-+......+..|-+-+++++.-+.+.+-+=.++......+-.--.-.-..+++|+.|+..... -|..+.-
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447899999999999999999999999999999888777776666666655555666788999999987763 3666555


Q ss_pred             -----hhhccchhHHHHHHHHHHHHhhhHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004517          528 -----EIYGERAILATEARELQNRLLSLSEER---DKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAE  599 (747)
Q Consensus       528 -----EVyGEKAILaTEArELQSRL~~LSeER---dkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~E  599 (747)
                           +.+.+|.   ....++..||.. ....   +.++.-|+|-....+.=+-.-++.+.-+++++.+.=+.-++-+++
T Consensus       401 ie~Lee~l~ekd---~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~  476 (775)
T PF10174_consen  401 IENLEEQLREKD---RQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKE  476 (775)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 5555553   334444455552 2111   233344444443333333333444555555555444444444444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517          600 QEVIMEKV----VQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       600 QEalM~kV----vEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~  658 (747)
                      ...-+...    .+..--|..--++.++|.--......-++.|+.++--+++++..|+.+++.
T Consensus       477 lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k  539 (775)
T PF10174_consen  477 LKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK  539 (775)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            43333322    222233444457788888888888888899999999999999999988876

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=91.44  E-value=20  Score=37.36  Aligned_cols=114  Identities=15%  Similarity=0.197  Sum_probs=78.2

Q ss_pred             cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchhHHHhHHHHHHHHHHHHHhccccc
Q 004517          450 CRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAK---AAAVRGGLDIFVKMDELKQMLAHAKEANDMHA  526 (747)
Q Consensus       450 ~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK---~EAs~aG~DILaKVEELKeML~~AKEANDmhA  526 (747)
                      =+|+.|...+.+...-+...-..++.+..|+.+=+..++..+..-   ..+......+-.++.+++.-|..|..+|...-
T Consensus        72 ~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~  151 (337)
T cd09234          72 DTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELH  151 (337)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            457888889999998888888888888888877666555554422   23333577889999999999999999887654


Q ss_pred             hhhhccc---hhH-------------------------HHHHHHHHHHHhhhHHHhhhHHHHHHH
Q 004517          527 GEIYGER---AIL-------------------------ATEARELQNRLLSLSEERDKSLAVLDE  563 (747)
Q Consensus       527 GEVyGEK---AIL-------------------------aTEArELQSRL~~LSeERdkaLaIIDE  563 (747)
                      .-+-.=+   .||                         ....++|-++|..|..+|...+.-+.+
T Consensus       152 ~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~  216 (337)
T cd09234         152 KAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRD  216 (337)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333211   222                         445666667777777777766555533

This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.29  E-value=35  Score=42.47  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             hccchhHHHHHHHHHHHHhhhHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHH---HH
Q 004517          530 YGERAILATEARELQNRLLSLSEERDKSLAV---LDEMRETLEARLAAAEDMRKEAEEEKFE----------KEE---SA  593 (747)
Q Consensus       530 yGEKAILaTEArELQSRL~~LSeERdkaLaI---IDEMr~TLEaRLAaAeeEr~AAEeeKie----------KEe---sA  593 (747)
                      -.++--|-++.+.|+.+|..+....+++...   +...|.+|+.+..-+..+.+.+.+-..-          .++   -.
T Consensus       507 ~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~  586 (1317)
T KOG0612|consen  507 EAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDL  586 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccH
Confidence            3456678888888998888887777777443   4455667776655555443322221111          111   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHH
Q 004517          594 RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEK  655 (747)
Q Consensus       594 rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKer  655 (747)
                      +..+...+..+-+.-++-++|+.+++.+   |+..++--.|+-.|+++|+..-.++..++..
T Consensus       587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~---~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~  645 (1317)
T KOG0612|consen  587 EDKLSLLEESKSKLSKENKKLRSELEKE---RRQRTEISEIIAELKEEISSLEETLKAGKKE  645 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence            2333333444444444445555555543   3334444456778888888888877665543

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.06  E-value=24  Score=37.68  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             cchhHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 004517          532 ERAILATEARELQNRLLSLSEERDKSLAVLD  562 (747)
Q Consensus       532 EKAILaTEArELQSRL~~LSeERdkaLaIID  562 (747)
                      +-..|..+..+|+++|..|.+.+...-..++
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~  330 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELEEIMD  330 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777777777666666654444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=90.76  E-value=50  Score=40.76  Aligned_cols=86  Identities=19%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          536 LATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQ  615 (747)
Q Consensus       536 LaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLq  615 (747)
                      ...++.+++..+.+++.+....-..+..+.++|++||+..+.+...+.++.-..++....+-.+...+.+++.+.-..+.
T Consensus       894 ~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~  973 (1353)
T TIGR02680       894 AAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLD  973 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566666666666666666777888888888777777777766666665555666666666644334444


Q ss_pred             HHHHHH
Q 004517          616 QQAEEN  621 (747)
Q Consensus       616 qEAEEN  621 (747)
                      .+++.+
T Consensus       974 ~~~~~~  979 (1353)
T TIGR02680       974 ERAEAR  979 (1353)
T ss_pred             HHHHHH
Confidence            444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK11281 hypothetical protein; Provisional

Probab=90.45  E-value=17  Score=44.23  Aligned_cols=197  Identities=15%  Similarity=0.205  Sum_probs=111.9

Q ss_pred             cchhhHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhcc
Q 004517          450 CRIDLLEEMIEDAKYN------KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEAND  523 (747)
Q Consensus       450 ~sIesLE~~IsdaK~n------K~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEAND  523 (747)
                      .+-+.|..-|+.+++.      ++.+...++...+.+++.+.++++++.-++.+..+-..+    .+.++=++.-|..++
T Consensus        36 p~~~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l----~~a~~~Le~Lk~~~~  111 (1113)
T PRK11281         36 PTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKL----RQAQAELEALKDDND  111 (1113)
T ss_pred             CCHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHhhcccc
Confidence            3344455555555443      455788899999999999999988888777777766553    333333444344444


Q ss_pred             ccchhhhccchhHHHHHHHHHHHHhhhHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-----
Q 004517          524 MHAGEIYGERAILATEARELQNRLLSLSEE---RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE--ESA-----  593 (747)
Q Consensus       524 mhAGEVyGEKAILaTEArELQSRL~~LSeE---RdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKE--esA-----  593 (747)
                      ..+-+-| .+..+    ..|+++|.++.++   ..+.|+-++---.+++.|..+|+....+|.....+=.  -.+     
T Consensus       112 ~~~~~~~-~~~Sl----~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~  186 (1113)
T PRK11281        112 EETRETL-STLSL----RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGG  186 (1113)
T ss_pred             ccccccc-cccCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4443445 22222    3366666665553   2333444444444556666666655444433322211  100     


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517          594 ----RASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       594 ----rk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~  658 (747)
                          ......-++-+.....+-..++||...|..|.+++--|   .|-+.-++.-+-+-|..|++....
T Consensus       187 ~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q---~d~~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        187 KALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ---RDYLTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                01111112233344445788999999999999998766   366666777777777777665544

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.35  E-value=48  Score=39.91  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             CceeeeecccccccccccCCCcccccccccccCCCCccccee
Q 004517          207 NGVVSVDKGQYTDVKFESEHTPIVMPTLSAHANGLGATDIDI  248 (747)
Q Consensus       207 ~~~~~~~k~~y~~~~~~~~~~~~~~~tls~~~~~~g~t~i~~  248 (747)
                      .|.-|.-.  .+-+.|....|-|+-|      ||+|=..|.+
T Consensus         9 ~gFKSF~~--~~~i~f~~~~t~IvGP------NGSGKSNI~D   42 (1163)
T COG1196           9 KGFKSFAD--PTEINFSPGFTAIVGP------NGSGKSNIVD   42 (1163)
T ss_pred             ECcccCCC--CeeeecCCCCeEEECC------CCCchHHHHH
Confidence            34444433  5566677777766665      6777555544

>PRK02224 chromosome segregation protein; Provisional

Probab=89.77  E-value=42  Score=38.31  Aligned_cols=43  Identities=23%  Similarity=0.194  Sum_probs=24.6

Q ss_pred             chhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 004517          526 AGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETL  568 (747)
Q Consensus       526 AGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TL  568 (747)
                      .-+++.+-.=+..+..+|+.++..|.+.|+..-.=|.|+|..+
T Consensus       594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i  636 (880)
T PRK02224        594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK  636 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666556666666666666666666554444444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.55  E-value=16  Score=44.95  Aligned_cols=31  Identities=29%  Similarity=0.535  Sum_probs=19.2

Q ss_pred             hcCccccccc-----chhhhhhhh---HHHHHHHhccCc
Q 004517          630 DRGRVVDSLQ-----GEISVICQD---VRLLKEKFDERV  660 (747)
Q Consensus       630 DRG~IVDsLQ-----GEISVIceD---V~~LKervD~rl  660 (747)
                      -||.|.|+|+     |-|-+|+..   .-..-.++|--|
T Consensus       598 s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAI  636 (1293)
T KOG0996|consen  598 SRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAI  636 (1293)
T ss_pred             hhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHH
Confidence            3677888888     777777653   333445555533

>PRK02224 chromosome segregation protein; Provisional

Probab=88.93  E-value=48  Score=37.86  Aligned_cols=16  Identities=13%  Similarity=0.266  Sum_probs=8.2

Q ss_pred             cccccchhhhhhhhHH
Q 004517          635 VDSLQGEISVICQDVR  650 (747)
Q Consensus       635 VDsLQGEISVIceDV~  650 (747)
                      +..++.+|.-|-.++.
T Consensus       594 ~~~~~~~i~~~~~~~~  609 (880)
T PRK02224        594 IRTLLAAIADAEDEIE  609 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4455555554444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.82  E-value=23  Score=39.79  Aligned_cols=82  Identities=28%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKE  581 (747)
Q Consensus       502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~A  581 (747)
                      .+++.+++++.+-+......    ..++-.+..-+..+...++.+|..+.++....=-.+.+=|..|+.++...+++++.
T Consensus       205 ~~~~~~~~~le~el~~l~~~----~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e  280 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEK----YEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKA  280 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555554443322    22233344556666666677777666665555555556677777777777666665


Q ss_pred             HHHHHH
Q 004517          582 AEEEKF  587 (747)
Q Consensus       582 AEeeKi  587 (747)
                      ++++..
T Consensus       281 ~~~~l~  286 (650)
T TIGR03185       281 NRAQLR  286 (650)
T ss_pred             HHHHHH
Confidence            554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=88.46  E-value=57  Score=38.15  Aligned_cols=31  Identities=29%  Similarity=0.268  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          597 LAEQEVIMEKVVQESKLLQQQAEENSKLREF  627 (747)
Q Consensus       597 L~EQEalM~kVvEESrkLqqEAEENsKLREF  627 (747)
                      |.+-+.-+..+.++.+++.+.++.-.++.+.
T Consensus       656 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (908)
T COG0419         656 LEELEEKVEELEAEIRRELQRIENEEQLEEK  686 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444555554433333343443333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.27  E-value=68  Score=38.84  Aligned_cols=125  Identities=22%  Similarity=0.218  Sum_probs=98.4

Q ss_pred             cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004517          532 ERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLE-------ARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIM  604 (747)
Q Consensus       532 EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLE-------aRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM  604 (747)
                      |-.-+..|.+.|....-.+-.++++..+.++-|+.+-+       .-++.+.....++|..+-.+|+..|  |+++..-+
T Consensus       738 el~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~--l~~~q~e~  815 (970)
T KOG0946|consen  738 ELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTR--LQELQSEL  815 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhH--HHHHHHHH
Confidence            44566778889988888899999999999999998876       2355666777777777767777655  67888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhccCcc
Q 004517          605 EKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERVP  661 (747)
Q Consensus       605 ~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~rlp  661 (747)
                      .+..+++.-+-++..++++..+-+   |.+--.+-+|-.-|-+..+.|++|+...=-
T Consensus       816 ~~~keq~~t~~~~tsa~a~~le~m---~~~~~~la~e~~~ieq~ls~l~~~~k~~~n  869 (970)
T KOG0946|consen  816 TQLKEQIQTLLERTSAAADSLESM---GSTEKNLANELKLIEQKLSNLQEKIKFGNN  869 (970)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHh---hccccchhhHHHHHHHHHHHHHHHhhhhhh
Confidence            888888888888888888776654   666677888888888888889988765443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.61  E-value=67  Score=40.17  Aligned_cols=94  Identities=23%  Similarity=0.332  Sum_probs=49.0

Q ss_pred             hcchhHHHhHHHHHHHHHHHHHhccccchhhh-------------ccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 004517          499 RGGLDIFVKMDELKQMLAHAKEANDMHAGEIY-------------GERAILATEARELQNRLLSLSEERDKSLAVLDEMR  565 (747)
Q Consensus       499 ~aG~DILaKVEELKeML~~AKEANDmhAGEVy-------------GEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr  565 (747)
                      .++.|.-+++++.+++..|.++-+.+.-.+-=             -.+..|..|.++||+-+......|....-++.+++
T Consensus       550 ~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~  629 (1317)
T KOG0612|consen  550 EAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELK  629 (1317)
T ss_pred             HhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555566666554322211             12456667777777777777777766665555554


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004517          566 E---TLEARLAAAEDMRKEAEEEKFEKEES  592 (747)
Q Consensus       566 ~---TLEaRLAaAeeEr~AAEeeKieKEes  592 (747)
                      .   +|+.++-+-..+..-+++.+.+..+.
T Consensus       630 ~~i~sL~~~~~~~~~~l~k~~el~r~~~e~  659 (1317)
T KOG0612|consen  630 EEISSLEETLKAGKKELLKVEELKRENQER  659 (1317)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3   34444443333333333333333333

>TIGR00606 rad50 rad50

Probab=86.42  E-value=51  Score=40.17  Aligned_cols=40  Identities=28%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             ccCceeeeecc--cccccccccCCCcccccccccccCCCCcccceeeh
Q 004517          205 ESNGVVSVDKG--QYTDVKFESEHTPIVMPTLSAHANGLGATDIDISI  250 (747)
Q Consensus       205 e~~~~~~~~k~--~y~~~~~~~~~~~~~~~tls~~~~~~g~t~i~~~~  250 (747)
                      ...|+-|++.|  .-+.+.|...      .|+--..||+|-|.|+..|
T Consensus         7 ~i~g~rSf~~~~~~~~~I~F~~~------~~~I~G~NGaGKTTil~ai   48 (1311)
T TIGR00606         7 SILGVRSFGIEDKDKQIIDFFSP------LTILVGPNGAGKTTIIECL   48 (1311)
T ss_pred             eeeceecCCCccccceeeecccc------eEEEECCCCCCHHHHHHHH
Confidence            45677777531  2345666543      3344455899999998876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.40  E-value=44  Score=38.39  Aligned_cols=35  Identities=9%  Similarity=0.232  Sum_probs=22.7

Q ss_pred             ccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004517          449 ICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREV  483 (747)
Q Consensus       449 ~~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEV  483 (747)
                      .--++.|.+.|.++......+-..|+.+..-++.+
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~  361 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQL  361 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33467777777777777777766666655554444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=86.31  E-value=80  Score=37.56  Aligned_cols=116  Identities=22%  Similarity=0.346  Sum_probs=63.1

Q ss_pred             ccchhHHHHHHHHHHHHh--------------hhHHHhhhHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHh
Q 004517          531 GERAILATEARELQNRLL--------------SLSEERDKSLAVLDEMRETLEA---RLAAAEDM-----RKEAEEEKFE  588 (747)
Q Consensus       531 GEKAILaTEArELQSRL~--------------~LSeERdkaLaIIDEMr~TLEa---RLAaAeeE-----r~AAEeeKie  588 (747)
                      .++.+|.|++-.|+.||-              .+.+|+..+-.=|.+|+..|+.   .+......     ....++++.-
T Consensus       336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql  415 (775)
T PF10174_consen  336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL  415 (775)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999988888774              3556666665666666655542   23222222     1112333322


Q ss_pred             HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCcccccccchhhhhh
Q 004517          589 KEESAR------------------ASLAEQEVIMEKVVQESKLLQQQA-EENSKLREFLMDRGRVVDSLQGEISVIC  646 (747)
Q Consensus       589 KEesAr------------------k~L~EQEalM~kVvEESrkLqqEA-EENsKLREFLMDRG~IVDsLQGEISVIc  646 (747)
                      .+...|                  ..+.+.+.+...+-+.-...+++. ++.-+++.-+-+.=.=|+.||++++=--
T Consensus       416 ~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~  492 (775)
T PF10174_consen  416 DEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE  492 (775)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            222222                  456677777777665544445443 4555555555555555666666655433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.99  E-value=31  Score=32.46  Aligned_cols=111  Identities=26%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             hHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          503 DIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEA  582 (747)
Q Consensus       503 DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr~AA  582 (747)
                      ....++.+.++++....+.-+-           +-...+++++.|..+.+.+....    +.+...+.|+...+...+..
T Consensus        78 ~~~~e~~~~~~~l~~l~~el~~-----------l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~  142 (191)
T PF04156_consen   78 RLQGELSELQQQLQQLQEELDQ-----------LQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKEL  142 (191)
T ss_pred             hhhhhHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555554433221           33444555555555555444433    66677777777777776666


Q ss_pred             HHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          583 EEEKFEKE---ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFL  628 (747)
Q Consensus       583 EeeKieKE---esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFL  628 (747)
                      .++..+=.   ...+.-..+++..+....+....|++...++--|+++|
T Consensus       143 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  191 (191)
T PF04156_consen  143 EKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL  191 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            65554433   22223333344444445566666666666666666553

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=85.41  E-value=97  Score=37.71  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          450 CRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA  495 (747)
Q Consensus       450 ~sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~  495 (747)
                      ..+..++..|..++..+..+=..+......+.+.......+++...
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~  652 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELK  652 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777766666665555544444444443333

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=84.14  E-value=37  Score=37.87  Aligned_cols=38  Identities=34%  Similarity=0.481  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517          614 LQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       614 LqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~  658 (747)
                      +.+++++...|-+       .|+.+||+|.-..+++..|+..+.+
T Consensus       152 ~~~s~~~~~~~~~-------~i~~~lg~~~~la~e~~~Lt~~Lk~  189 (448)
T COG1322         152 IHESAEERSTLLE-------EIDRLLGEIQQLAQEAGNLTAALKG  189 (448)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4455555555544       5789999999999999999999887

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=84.02  E-value=32  Score=40.92  Aligned_cols=75  Identities=31%  Similarity=0.409  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHH-------Hhh
Q 004517          567 TLEARLAAAEDMRKEAEEEKF-EKEESARA----SLAEQEVIMEKVVQESKLLQQQA--EENS--KLREF-------LMD  630 (747)
Q Consensus       567 TLEaRLAaAeeEr~AAEeeKi-eKEesArk----~L~EQEalM~kVvEESrkLqqEA--EENs--KLREF-------LMD  630 (747)
                      +||..+-++-.||.|+..++. -|++.|-+    .|+|.-.++..++.|-.||-++-  +.|+  |||.-       +-.
T Consensus       413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K  492 (961)
T KOG4673|consen  413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK  492 (961)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            566677777777777766544 34444443    35567778888888877775543  3332  56643       334


Q ss_pred             cCcccccccch
Q 004517          631 RGRVVDSLQGE  641 (747)
Q Consensus       631 RG~IVDsLQGE  641 (747)
                      .|.-|--||-|
T Consensus       493 ~ge~i~~L~sE  503 (961)
T KOG4673|consen  493 KGELITKLQSE  503 (961)
T ss_pred             hhhHHHHHHHH
Confidence            45444445544

>PHA02562 46 endonuclease subunit; Provisional

Probab=83.51  E-value=68  Score=34.41  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=14.1

Q ss_pred             cccccccCCCCcccceeehh
Q 004517          232 PTLSAHANGLGATDIDISIF  251 (747)
Q Consensus       232 ~tls~~~~~~g~t~i~~~~f  251 (747)
                      .++-.-.||.|=|.|...|+
T Consensus        29 ~~~i~G~NG~GKStll~aI~   48 (562)
T PHA02562         29 KTLITGKNGAGKSTMLEALT   48 (562)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            34445579999999877664

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.29  E-value=1.3e+02  Score=37.41  Aligned_cols=10  Identities=50%  Similarity=0.916  Sum_probs=7.7

Q ss_pred             cccccccccc
Q 004517          311 GSLTAWTDFD  320 (747)
Q Consensus       311 ~~~~~w~~f~  320 (747)
                      |++.+|+.-+
T Consensus       630 GLLDA~v~p~  639 (1353)
T TIGR02680       630 GLLDAWVTAD  639 (1353)
T ss_pred             CCcceeeCCC
Confidence            9999998433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=81.91  E-value=98  Score=35.16  Aligned_cols=23  Identities=17%  Similarity=0.166  Sum_probs=10.7

Q ss_pred             ccccchhhhhhhhHHHHHHHhcc
Q 004517          636 DSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       636 DsLQGEISVIceDV~~LKervD~  658 (747)
                      ..||-|..+.-+--..|-.|..+
T Consensus       379 ~~L~Re~~~~~~~Y~~ll~r~~e  401 (754)
T TIGR01005       379 DALQRDAAAKRQLYESYLTNYRQ  401 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily

Probab=81.81  E-value=73  Score=33.51  Aligned_cols=115  Identities=10%  Similarity=0.174  Sum_probs=83.3

Q ss_pred             chhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcchhHHHhHHHHHHHHHHHHHhcc
Q 004517          451 RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKA-------AAVRGGLDIFVKMDELKQMLAHAKEAND  523 (747)
Q Consensus       451 sIesLE~~IsdaK~nK~~L~ssmEsi~~MmrEVELqEekAkqAK~-------EAs~aG~DILaKVEELKeML~~AKEAND  523 (747)
                      +++.|...+.+...-|..-...++....|+..=+-.-+ .-++|.       .+......+..++.+++..|..|.+++.
T Consensus        73 G~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~-~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~  151 (339)
T cd09238          73 GLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDS-AARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDE  151 (339)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            37888999999999999888888888888765333333 333343       4566777999999999999999999987


Q ss_pred             ccchhhh---------c--------------------cchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 004517          524 MHAGEIY---------G--------------------ERAILATEARELQNRLLSLSEERDKSLAVLDEMRE  566 (747)
Q Consensus       524 mhAGEVy---------G--------------------EKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~  566 (747)
                      ..-.-+.         +                    .....+...+++-..|..|..+|......|.++..
T Consensus       152 ~v~~k~~~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~  223 (339)
T cd09238         152 SLRRRIEDAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR  223 (339)
T ss_pred             HHHHHHHHHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3221111         1                    12344577888999999999999987777765554

This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=81.76  E-value=1.2e+02  Score=37.55  Aligned_cols=186  Identities=15%  Similarity=0.135  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHhccccchh
Q 004517          453 DLLEEMIEDAKYN----KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGE  528 (747)
Q Consensus       453 esLE~~IsdaK~n----K~~L~ssmEsi~~MmrEVELqEekAkqAK~EAs~aG~DILaKVEELKeML~~AKEANDmhAGE  528 (747)
                      +.|..-++.++++    ++.+...++...+.+.+.+.+.+++++-++....+-..    .+++++=++.-|..     ..
T Consensus        26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~----~~~~~~~l~~~~~~-----~~   96 (1109)
T PRK10929         26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKL----SAELRQQLNNERDE-----PR   96 (1109)
T ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHhhhcc-----cc
Confidence            4566666655544    45778888889999999998888888777766655443    34444433321111     11


Q ss_pred             hhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhH---------H
Q 004517          529 IYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMR---------KEAEEEKFEK---------E  590 (747)
Q Consensus       529 VyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEMr~TLEaRLAaAeeEr---------~AAEeeKieK---------E  590 (747)
                      -|-++.-+    .+|+.||.+.+.+    |.-+++-.++.+.|+..+...-         +....+.+++         +
T Consensus        97 ~~~~~~s~----~~Leq~l~~~~~~----L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~  168 (1109)
T PRK10929         97 SVPPNMST----DALEQEILQVSSQ----LLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNT  168 (1109)
T ss_pred             cccccCCH----HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence            12222222    5555555544444    3333333333334441111111         1111111111         1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517          591 ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       591 esArk~L~EQEalM~kVvEESrkLqqEAEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~  658 (747)
                      .........-++-......+-..|++|...|.++.|++--|-   |-++-++.-+-+.+..|+.....
T Consensus       169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~---dl~~~~~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        169 PLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRS---ELAKKRSQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111122222233445567788999999999999987764   55677777777777777665544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=81.69  E-value=95  Score=34.76  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhcCcc-cccccchhhhhhhhHHHHHHHhcc
Q 004517          621 NSKLREFLMDRGRV-VDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       621 NsKLREFLMDRG~I-VDsLQGEISVIceDV~~LKervD~  658 (747)
                      -..|+.-|-. |.| +++++.+...+-+++..|+.+.+.
T Consensus       457 i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~d  494 (569)
T PRK04778        457 IEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEE  494 (569)
T ss_pred             HHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666 887 677777788888888888877665

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.63  E-value=1.1e+02  Score=35.39  Aligned_cols=41  Identities=15%  Similarity=0.135  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhhcCcccccccchhhhhhhhHHHHHHHhcc
Q 004517          618 AEENSKLREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDE  658 (747)
Q Consensus       618 AEENsKLREFLMDRG~IVDsLQGEISVIceDV~~LKervD~  658 (747)
                      |+...+||+.=..--+.--+||-.+..-...|..|+..+.+
T Consensus       342 ad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~  382 (546)
T PF07888_consen  342 ADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQM  382 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45555555554444444455664555555567777777765

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PLN02939 transferase, transferring glycosyl groups

Probab=81.55  E-value=1.1e+02  Score=37.40  Aligned_cols=95  Identities=20%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             HHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHH---------HhhhHHHHHHHHHHHHHHHHHH
Q 004517          504 IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSE---------ERDKSLAVLDEMRETLEARLAA  574 (747)
Q Consensus       504 ILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSe---------ERdkaLaIIDEMr~TLEaRLAa  574 (747)
                      ...|||.|+.||..|+-.-+. |.-|..       .-|+||.++-+|.+         .|-..+..+++=-.-|+.||.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (977)
T PLN02939        298 WWEKVENLQDLLDRATNQVEK-AALVLD-------QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQA  369 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhc-------cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            678999999999988754332 333333       34555555554432         2333333343333456677777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          575 AEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKL  613 (747)
Q Consensus       575 AeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrk  613 (747)
                      ..++..+--       +.-++...|=.+.+.++++||++
T Consensus       370 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  401 (977)
T PLN02939        370 SDHEIHSYI-------QLYQESIKEFQDTLSKLKEESKK  401 (977)
T ss_pred             hHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhc
Confidence            666655433       33344455555666667777766

>PRK04863 mukB cell division protein MukB; Provisional

Probab=81.07  E-value=1.7e+02  Score=37.23  Aligned_cols=58  Identities=16%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             hhHHHhHHHHHHHHHHHHHhccccchhhhccchhHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 004517          502 LDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEM  564 (747)
Q Consensus       502 ~DILaKVEELKeML~~AKEANDmhAGEVyGEKAILaTEArELQSRL~~LSeERdkaLaIIDEM  564 (747)
                      ..|-.+++.|++-...|++-.....     +...+.-+...++..|..|.++..+....+.+.
T Consensus       317 ~ELe~rL~kLEkQaEkA~kyleL~e-----e~lr~q~ei~~l~~~LeELee~Lee~eeeLeel  374 (1486)
T PRK04863        317 AELNEAESDLEQDYQAASDHLNLVQ-----TALRQQEKIERYQADLEELEERLEEQNEVVEEA  374 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666655533222     112233444444445555554444444444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.11  E-value=29  Score=40.43  Aligned_cols=19  Identities=16%  Similarity=0.128  Sum_probs=14.2

Q ss_pred             ceeeccccccccccccccc
Q 004517          300 PIVMPANAVANGSLTAWTD  318 (747)
Q Consensus       300 ~~~~~~na~~~~~~~~w~~  318 (747)
                      -+.+.-|+-+|.+...|.+
T Consensus       380 ryy~~H~~GvH~V~L~wl~  398 (717)
T PF10168_consen  380 RYYCYHNAGVHSVTLPWLS  398 (717)
T ss_pred             eEEEEecCccEEEEeccHH
Confidence            3566678888877778887

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=80.09  E-value=26  Score=33.95  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004517          554 RDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSK  623 (747)
Q Consensus       554 RdkaLaIIDEMr~TLEaRLAaAeeEr~AAEeeKieKEesArk~L~EQEalM~kVvEESrkLqqEAEENsK  623 (747)
                      |.-.+.+|++=+...+.=|+.|+..++.|++-+-+-++.=+++..|-..||+...++..++.+++-+.++
T Consensus        26 wkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~   95 (154)
T PRK06568         26 KKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIE   95 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777778888888888888888888888777888888888888888888887777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	747
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 14/211 (6%)

Query: 451  RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDE 510
            RI+  EE  +  +  KK + + M  +   + E E   +  +  K  A         K+ +
Sbjct: 935  RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG-------KIKK 987

Query: 511  LKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERD---KSLAVLDEMRET 567
            ++  +   ++ N+    ++  ER +L     +L   L    E+     K     + M   
Sbjct: 988  MEDDILIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043

Query: 568  LEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREF 627
            LE RL   E  R+E E+ K + E  +     +   +  ++ +    L ++ EE       
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103

Query: 628  LMDRGRVVDSLQGEISVICQDVRLLKEKFDE 658
            L D     ++   +I  +   +  L+E  + 
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLES 1134

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 10/199 (5%)

Query: 466  KKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMH 525
            ++ +    E +       +  E   KE +    +   +  +  ++L+       EA +M 
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 526  AGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMR---ETLEARLAAAEDMRKEA 582
                  ++  L     E++ R+    E   +  A   +M+     LE +L   E  R++ 
Sbjct: 916  VRLAA-KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 583  EEEKFEKE---ESARASLAEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQ 639
            + EK   +   +     +   E    K+ +E KLL+   E  S L   L +      +L 
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE---ERVSDLTTNLAEEEEKAKNLT 1031

Query: 640  GEISVICQDVRLLKEKFDE 658
               +     +  L+ +  +
Sbjct: 1032 KLKNKHESMISELEVRLKK 1050

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 29/186 (15%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 451  RIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDE 510
             I ++E+        +K L + +  +   + E E + +   + K        ++ V++ +
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

Query: 511  LKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEA 570
             ++     ++       ++ GE + L  +  ELQ ++  L  +  K    L      LE 
Sbjct: 1051 EEKSRQELEKIKR----KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 571  RLAAAEDMRKEAEE---------EKFEKEESARASLAEQEVIMEKVVQE-SKLLQQQAEE 620
              +   +  K+  E         E  E E++AR    +Q+  + + ++     L+   + 
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 621  NSKLRE 626
             +  +E
Sbjct: 1167 TATQQE 1172

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 455  LEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQM 514
             E MI + +   K   K+ + +  + R++E +     E  A       ++  ++ ELK  
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA-------ELQAQIAELKAQ 1089

Query: 515  LAHAKEANDMHAGEIYGERA---ILATEARELQNRLLSLSEERDKSLAVLDEMRETLEAR 571
            LA  +E        +  E +       + REL++ +  L E+       L+  +      
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED-------LESEKAARNKA 1142

Query: 572  LAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEE 620
                 D+ +E E  K E E++   +  +QE             +   ++
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQE-------LRGSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 62/478 (12%), Positives = 132/478 (27%), Gaps = 124/478 (25%)

Query: 342 LDCPLEVENSVAQLVPSSVQEHTSNVP--ESGFQLEVGSSLPSSVQQHTSDVSESGFHLE 399
            DC  +V++    ++     +H        SG      + L     +    V +  F   
Sbjct: 33  FDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL----SKQEEMVQK--F--- 82

Query: 400 VGSSSTTDSG------KPDANGSSDLMSKQENSVNGKCNIEDDSTITTIVTRSGQICRID 453
           V      +        K +    S +        +   N  D+            + R+ 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFA-----KYNVSRLQ 135

Query: 454 LLEEMIEDAKYNKKNLFKA----------M----ESVMNMMREVEIQERAAKEAKAAAVR 499
              ++       ++ L +           +    ++ +           A     +  V+
Sbjct: 136 PYLKL-------RQALLELRPAKNVLIDGVLGSGKTWV-----------ALDVCLSYKVQ 177

Query: 500 GGLD--IF-VKM-------DELKQM--LAHAKEANDMHAGEIYGERAILATEARELQNRL 547
             +D  IF + +         L+ +  L +  + N   +   +     L      +Q  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIH--SIQAEL 234

Query: 548 LSLSEERD--KSLAVLDEMR--ETLEA-----------RLAAAEDMRKEAEEEKFEKEES 592
             L + +     L VL  ++  +   A           R     D    A       +  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 593 ARASLAEQEV--IMEKVV-QESKLLQQQAEENS---------KLREFLM--DRGRVV--D 636
              +L   EV  ++ K +    + L ++    +          +R+ L   D  + V  D
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 637 SLQG--EISVICQDVRLLKEKFDERVPLSKSVS-SSQTTCIL---ASSGSSMKSVASLV- 689
            L    E S+   +    ++ FD       S    +    ++         M  V  L  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 690 ---AEQDLTSETLEKMSPAPAVDVESLKSRGDEK------IGDFWRQLSDDGWDLFEN 738
               E+     T+      P++ +E      +E       +  +    + D  DL   
Sbjct: 414 YSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 8/217 (3%)

Query: 444  TRSGQICRIDLLEEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLD 503
             R   I    LL   +   KY           +   +R   +          A V     
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG-WLARVHYHRTLKAIVYLQCC 896

Query: 504  IFVKMDELKQMLAHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDE 563
                M + +      +  +     +++     L  +  +LQ ++   ++E       L E
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIG---LENKIMQLQRKIDEQNKEYKS----LLE 949

Query: 564  MRETLEARLAAAEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSK 623
                LE   +   +  +   E     EE A+ +      + E++ +  K L Q   E   
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 624  LREFLMDRGRVVDSLQGEISVICQDVRLLKEKFDERV 660
            + E+        + L  E+      ++  KE+ + R+
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 17/189 (8%), Positives = 62/189 (32%), Gaps = 6/189 (3%)

Query: 471  KAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIY 530
            K  + + +    ++   R         +       + + +  +        +      +Y
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 531  GERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE 590
             +       A+    +L   +   ++      ++   LE ++   +  + + + ++++  
Sbjct: 893  LQCCYRRMMAKRELKKLKIEARSVER----YKKLHIGLENKIMQLQR-KIDEQNKEYKSL 947

Query: 591  ESARASL-AEQEVIMEKVVQESKLLQQQAEENSKLREFLMDRGRVVDSLQGEISVICQDV 649
                 +L        EK+  + + L+   EE       ++     +  L+ E+     + 
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 650  RLLKEKFDE 658
            + ++E  D+
Sbjct: 1008 KTIEEWADK 1016

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 22/173 (12%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 481  REVEIQERAAKEA-KAAAVRGGLDIFVKMDELKQMLAHAKEANDMHAGEIYGERAILATE 539
            RE++  +  A+   +   +  GL+   K+ +L++ +    +       ++       +TE
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLE--NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 540  ARELQNRLLSLSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEK---FEKEESARAS 596
              +L++ +  L    ++          +L+  +A       + + EK    E  +  +  
Sbjct: 962  TEKLRSDVERL-RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 597  LAEQEVIMEKVVQESKL----LQQQAEENSKLREFLMDRGRV--VDSLQGEIS 643
              +    +++     K     L ++  + +K     M++  V     L+ +++
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLN 1073

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 550 LSEERDKSLAVLDEMRETLEARLAAAEDMRKEAEEEKFEKE--ESARASLAEQEVIMEKV 607
           L++E +     + + RE    RL        +A  +  E+E  E A+  L E      + 
Sbjct: 80  LTQEPES----IRKWREEQRKRLQ-----ELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130

Query: 608 VQESKLLQQQAEENSKLREFLMDR 631
           V+++K+  + A++      F    
Sbjct: 131 VEKNKINNRIADK-----AFYQQP 149

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 32/194 (16%), Positives = 73/194 (37%), Gaps = 5/194 (2%)

Query: 427 VNGKCNIEDDSTITTIVTRSGQICRIDLLEEMIEDAKYNKKNLFKA-MESVMNMMREVEI 485
            NG      D      V +  +      ++  IE    +++   K   + +    R    
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689

Query: 486 QERAAKEAKAAAVRGGLDIFVKMDELKQMLAHAKEANDMHA--GEIYGERAILATEAREL 543
           +++   +++A   R  L     M    +   +AK   +  A    I GE ++L  + +  
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749

Query: 544 QNRLLSLSE-ERDKSLAVLDEMRETLEARLAAAEDMR-KEAEEEKFEKEESARASLAEQE 601
              + + +E ER K +  ++ +    +  L  ++  +    E +KF++   A      ++
Sbjct: 750 ALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRD 809

Query: 602 VIMEKVVQESKLLQ 615
           + +     + KLLQ
Sbjct: 810 LAVAGPEMQVKLLQ 823

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	747
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	3e-05
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	1e-04

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 10/172 (5%)

Query: 456 EEMIEDAKYNKKNLFKAMESVMNMMREVEIQERAAKEAKAAAVRGGLDIFVKMDELKQML 515
           EE ++   Y+K   ++     +  +++++ +          A           + +   +
Sbjct: 136 EEEVKAGIYSKPGGYRL---FVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI 192

Query: 516 AHAKEANDMHAGEIYGERAILATEARELQNRLLSLSEERDKSLAVLDEMRETLEARLAA- 574
               +       EI  ER    +     +     L E + K+  ++++   + +  L   
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKM----LHEMQRKNEQMMEQKERSYQEHLKQL 248

Query: 575 AEDMRKEAEEEKFEKEESARASLAEQEVIMEKVVQESKLLQQQAEENSKLRE 626
            E M  +  +   E+E +    L EQE ++++  Q+    +    E   L+ 
Sbjct: 249 TEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES--RIMKNEIQDLQT 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	747
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	93.25
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	92.43

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.039  Score=30.60  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             4799999986124302888999885302241224567441
Q 004517            3 FNAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLT   42 (747)
Q Consensus         3 fk~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~   42 (747)
                      |++++..|++|||.+|.-++|+|-....-++|+|+.-.|.
T Consensus        12 ~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          12 RKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999998879997999999999929977999999871

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.11  Score=27.56  Aligned_cols=43  Identities=21%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf             7999999861243028889998853022412245674410234
Q 004517            4 NAVYRCLMEMFPQIDTRLLKAVAIEHSKDADAAATIVLTEILP   46 (747)
Q Consensus         4 k~Vyr~L~e~FPqvD~riLkaVAiehskDaDaAv~~Vl~ev~P   46 (747)
                      .+..+.|++|||.+|.-++++|-+...-++|.|+...|.=--|
T Consensus        10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_          10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             9999999998788779999999999399779999999855787