Citrus Sinensis ID: 004613
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | 2.2.26 [Sep-21-2011] | |||||||
| Q9USQ7 | 606 | Diphthine--ammonia ligase | yes | no | 0.621 | 0.760 | 0.381 | 4e-83 | |
| A2RV01 | 255 | Diphthine--ammonia ligase | yes | no | 0.334 | 0.972 | 0.593 | 3e-81 | |
| Q7L8W6 | 267 | Diphthine--ammonia ligase | yes | no | 0.338 | 0.940 | 0.588 | 8e-80 | |
| Q5M9F5 | 267 | Diphthine--ammonia ligase | yes | no | 0.354 | 0.985 | 0.572 | 1e-79 | |
| Q9CQ28 | 267 | Diphthine--ammonia ligase | yes | no | 0.354 | 0.985 | 0.572 | 4e-79 | |
| Q2HJF5 | 267 | Diphthine--ammonia ligase | yes | no | 0.334 | 0.928 | 0.595 | 5e-79 | |
| Q12429 | 685 | Diphthine--ammonia ligase | yes | no | 0.711 | 0.770 | 0.308 | 1e-66 | |
| Q57990 | 223 | Uncharacterized protein M | yes | no | 0.273 | 0.910 | 0.340 | 2e-19 | |
| P52758 | 137 | Ribonuclease UK114 OS=Hom | no | no | 0.152 | 0.824 | 0.290 | 2e-06 | |
| P80601 | 137 | Ribonuclease UK114 OS=Cap | N/A | no | 0.082 | 0.445 | 0.426 | 3e-06 |
| >sp|Q9USQ7|DPH6_SCHPO Diphthine--ammonia ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug71 PE=1 SV=1 | Back alignment and function desciption |
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Score = 310 bits (793), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 190/498 (38%), Positives = 280/498 (56%), Gaps = 37/498 (7%)
Query: 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYA 60
MKV+ L+SGGKDSC+ +M C+ GH++VALANL P +D DE+DS+MYQ+VGH +I YA
Sbjct: 1 MKVLGLISGGKDSCFNLMHCVSLGHEVVALANLHP-EDGKDEIDSFMYQSVGHDVIPLYA 59
Query: 61 ECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY 120
EC LPL+R +I G + +Q L Y+ T DE ED+Y L+ V P + AVS+GAI S Y
Sbjct: 60 ECFDLPLYREKIGGQSINQNLDYQFTEKDETEDLYRLIKRVLTNHPDLEAVSTGAILSTY 119
Query: 121 QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180
QR RVE+VC RLGL SL++LW++DQ LL +M+ +G+NAI +KVAA+GL K LGK +A
Sbjct: 120 QRTRVENVCKRLGLKSLSFLWQKDQEKLLNDMVVSGLNAILIKVAAIGLT-RKDLGKSLA 178
Query: 181 FLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV- 239
+ L L + + ++ CGEGGEYETL LDCPLF RIVL + +VV HS+ + + V
Sbjct: 179 EMQDKLLTLNKKFELHPCGEGGEYETLVLDCPLF-KKRIVLTDKEVVEHSSGEVCYLKVK 237
Query: 240 --------LHPLAFHLEYKAGSASLSGSRETE--NSIQEKTGLVFEVQGECPQNSEAMCL 289
P++ E + L G + ++I +K L+ + Q E P + + +
Sbjct: 238 ACVKDKPEWQPISLKSEL-VPNEELLGEEYSHIYHTISKKYELI-DDQEETP--TSLIPI 293
Query: 290 PVAEVTDSVEVTDNRLNISRRKKDNTFSICCWLQETQKTSAGLLDDLRVVLKQIESKLVR 349
P+ E + ++K +F + + T+ + + + + L
Sbjct: 294 PLRES-------------AFQQKKGSFLVLGNVVATKGSYNTFQGEAESAINNLNELLGT 340
Query: 350 YGFDWGHVLYIHLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAY 409
YG+ +V ++ + +S M++FA N Y K+ PSRS + PL +
Sbjct: 341 YGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDF----TNPPSRSCVAAPL--ASEYRIV 394
Query: 410 IEVLVANDQSKRVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGP 469
+ +V + KR LHVQ S WAP+ IGPYSQ+ V+ ++GQ+GL P M L
Sbjct: 395 MSCIVGDVTEKRALHVQGQSYWAPANIGPYSQSICANGVVFISGQIGLIPSVMELKLHDK 454
Query: 470 TVELEQALQNSEAVAKCF 487
E+ ALQ++ VAK
Sbjct: 455 IFEMVLALQHANRVAKAM 472
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Has a role in meiosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|A2RV01|DPH6_DANRE Diphthine--ammonia ligase OS=Danio rerio GN=atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7L8W6|DPH6_HUMAN Diphthine--ammonia ligase OS=Homo sapiens GN=ATPBD4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5M9F5|DPH6_RAT Diphthine--ammonia ligase OS=Rattus norvegicus GN=Atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9CQ28|DPH6_MOUSE Diphthine--ammonia ligase OS=Mus musculus GN=Atpbd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2HJF5|DPH6_BOVIN Diphthine--ammonia ligase OS=Bos taurus GN=ATPBD4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q12429|DPH6_YEAST Diphthine--ammonia ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPH6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q57990|Y570_METJA Uncharacterized protein MJ0570 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0570 PE=4 SV=1 | Back alignment and function description |
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| >sp|P52758|UK114_HUMAN Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1 | Back alignment and function description |
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| >sp|P80601|UK114_CAPHI Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| 255561955 | 745 | protein with unknown function [Ricinus c | 1.0 | 0.995 | 0.711 | 0.0 | |
| 225465631 | 741 | PREDICTED: meiotically up-regulated gene | 0.990 | 0.991 | 0.699 | 0.0 | |
| 224144584 | 751 | predicted protein [Populus trichocarpa] | 0.998 | 0.986 | 0.712 | 0.0 | |
| 224123564 | 742 | predicted protein [Populus trichocarpa] | 0.993 | 0.993 | 0.689 | 0.0 | |
| 356571763 | 747 | PREDICTED: meiotically up-regulated gene | 0.998 | 0.991 | 0.664 | 0.0 | |
| 449477720 | 735 | PREDICTED: meiotically up-regulated gene | 0.982 | 0.991 | 0.669 | 0.0 | |
| 449470226 | 731 | PREDICTED: LOW QUALITY PROTEIN: meiotica | 0.977 | 0.991 | 0.664 | 0.0 | |
| 145338105 | 718 | endoribonuclease [Arabidopsis thaliana] | 0.963 | 0.995 | 0.646 | 0.0 | |
| 297833126 | 717 | endoribonuclease [Arabidopsis lyrata sub | 0.963 | 0.997 | 0.653 | 0.0 | |
| 7547107 | 715 | unknown protein [Arabidopsis thaliana] | 0.959 | 0.995 | 0.644 | 0.0 |
| >gi|255561955|ref|XP_002521986.1| protein with unknown function [Ricinus communis] gi|223538790|gb|EEF40390.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/743 (71%), Positives = 619/743 (83%), Gaps = 1/743 (0%)
Query: 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYA 60
MKVVALVSGGKDSCYAMMKCIQYGH+IVALANL+P DDSVDELDSYMYQTVGHQIIVSYA
Sbjct: 3 MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLLPVDDSVDELDSYMYQTVGHQIIVSYA 62
Query: 61 ECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY 120
ECMG+PLFRRRI GSTR QKL+YR TPGDEVEDM+ILLNEVK QIPSVTAVSSGAIASDY
Sbjct: 63 ECMGVPLFRRRIQGSTRDQKLNYRTTPGDEVEDMFILLNEVKTQIPSVTAVSSGAIASDY 122
Query: 121 QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180
QRLRVESVCSRLGLVSLAYLWKQDQS+LLQEMITNGI AITVKVAAMGL+P KHLGKEIA
Sbjct: 123 QRLRVESVCSRLGLVSLAYLWKQDQSMLLQEMITNGIVAITVKVAAMGLDPAKHLGKEIA 182
Query: 181 FLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVL 240
FL P+LHKLKE YGINVCGEGGEYETLTLDCPLFVNARIVLDEF +VLHS+DSIAPVGV+
Sbjct: 183 FLKPHLHKLKELYGINVCGEGGEYETLTLDCPLFVNARIVLDEFTIVLHSSDSIAPVGVI 242
Query: 241 HPLAFHLEYKAGSASLSGSRETENSIQEKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEV 300
HPL FHLE K +A SG+ +T N QEKTG VFEVQ +C + SE CL AE+ + EV
Sbjct: 243 HPLEFHLENKERAALSSGNVKTNNFCQEKTGPVFEVQVDCSKRSETTCLTSAEILNIAEV 302
Query: 301 TDNRLNISRRKKDNTFSICCWLQETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYI 360
RL IS+ +KD+TFSI CWLQ++ TS L +DL++VLK +ES+L RYGF W HV+YI
Sbjct: 303 KHERLCISKTQKDSTFSISCWLQDSGNTSTALNEDLKIVLKHMESQLARYGFGWEHVVYI 362
Query: 361 HLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAYIEVLVANDQSK 420
HLYI+DMNEF ANE YV+FIT EKCP GVPSRSTIELPLL+VGLGKAYIEVLVAND+SK
Sbjct: 363 HLYIADMNEFTTANEMYVRFITQEKCPFGVPSRSTIELPLLQVGLGKAYIEVLVANDKSK 422
Query: 421 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 480
VLHVQSIS WAPSCIGPYSQATLHKE+L MAGQLGLDPPTM LC+GGP ELEQAL+NS
Sbjct: 423 NVLHVQSISSWAPSCIGPYSQATLHKEMLYMAGQLGLDPPTMALCSGGPAAELEQALENS 482
Query: 481 EAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLD 540
EAVAKCF+CSI +SA+ F +YCS + S+RLKIQEK ++F+KQMR+ +E + KVLD
Sbjct: 483 EAVAKCFHCSICSSAVLFTIYCSKQIPLSDRLKIQEKQNSFIKQMRMLELQEGNTRKVLD 542
Query: 541 PIFLFVLASNLPKSALVEIKPILYVTDDSETVSEIVQDLSCMKAPLHWGFQHADWHESCF 600
PI+L+VL +LPK A VE+KP+L+V+ D++ + V LS P WGF+ A WH+SC
Sbjct: 543 PIYLYVLVPDLPKRAFVEVKPVLFVSKDADMENATVHSLSPTVLPNCWGFEQALWHDSCI 602
Query: 601 QKCVVHEKICAVILSITCEIAARICSESLDASQSKDCQTSQADGGMGRLSRFCIYLLNKI 660
QKCVV KICAV++SIT +I A++CSE+ A++++D Q S M R++RFCIYLL+K+
Sbjct: 603 QKCVVSGKICAVLMSITNDIVAKVCSEAQSANENEDHQNSLTKVQMERITRFCIYLLDKV 662
Query: 661 IVENNFSWEDVTNLRLYFPTSLSMPMVTLSAIFSSAFDELAVMNPRMKIDGDSIFNLVPV 720
+VE++FSWE+ LR Y PTSLSM + T+S +F+SAF EL+ M ++ + FN+VPV
Sbjct: 663 VVESDFSWEETMTLRFYLPTSLSMTLETVSLMFTSAFKELSEMGRTIQTGEEPAFNIVPV 722
Query: 721 LGAGRS-ATMDDIITCELFAQKS 742
LGAG+S A+MDD+ITCELFAQKS
Sbjct: 723 LGAGKSVASMDDVITCELFAQKS 745
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465631|ref|XP_002268271.1| PREDICTED: meiotically up-regulated gene 71 protein [Vitis vinifera] gi|302143608|emb|CBI22361.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224144584|ref|XP_002325340.1| predicted protein [Populus trichocarpa] gi|222862215|gb|EEE99721.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224123564|ref|XP_002319111.1| predicted protein [Populus trichocarpa] gi|222857487|gb|EEE95034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356571763|ref|XP_003554042.1| PREDICTED: meiotically up-regulated gene 71 protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449477720|ref|XP_004155103.1| PREDICTED: meiotically up-regulated gene 71 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449470226|ref|XP_004152819.1| PREDICTED: LOW QUALITY PROTEIN: meiotically up-regulated gene 71 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|145338105|ref|NP_187098.2| endoribonuclease [Arabidopsis thaliana] gi|332640566|gb|AEE74087.1| endoribonuclease [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297833126|ref|XP_002884445.1| endoribonuclease [Arabidopsis lyrata subsp. lyrata] gi|297330285|gb|EFH60704.1| endoribonuclease [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|7547107|gb|AAF63779.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| TAIR|locus:2100910 | 718 | AT3G04480 "AT3G04480" [Arabido | 0.828 | 0.856 | 0.677 | 1.7e-226 | |
| ZFIN|ZDB-GENE-050227-15 | 456 | atpbd4 "ATP binding domain 4" | 0.575 | 0.936 | 0.448 | 1.2e-90 | |
| DICTYBASE|DDB_G0278373 | 752 | DDB_G0278373 "endoribonuclease | 0.607 | 0.599 | 0.377 | 8.4e-79 | |
| POMBASE|SPBC577.12 | 606 | mug71 "diphthamide synthetase | 0.652 | 0.798 | 0.378 | 1.4e-78 | |
| UNIPROTKB|Q7L8W6 | 267 | ATPBD4 "Diphthine--ammonia lig | 0.353 | 0.981 | 0.570 | 1.9e-74 | |
| RGD|1310006 | 267 | Atpbd4 "ATP binding domain 4" | 0.353 | 0.981 | 0.574 | 4e-74 | |
| UNIPROTKB|Q2HJF5 | 267 | ATPBD4 "Diphthine--ammonia lig | 0.353 | 0.981 | 0.570 | 1.1e-73 | |
| MGI|MGI:1913882 | 267 | Atpbd4 "ATP binding domain 4" | 0.353 | 0.981 | 0.574 | 1.1e-73 | |
| CGD|CAL0002720 | 646 | orf19.839 [Candida albicans (t | 0.308 | 0.354 | 0.487 | 7.6e-72 | |
| UNIPROTKB|Q5AHF8 | 646 | CaO19.839 "Putative uncharacte | 0.308 | 0.354 | 0.487 | 7.6e-72 |
| TAIR|locus:2100910 AT3G04480 "AT3G04480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2186 (774.6 bits), Expect = 1.7e-226, P = 1.7e-226
Identities = 425/627 (67%), Positives = 501/627 (79%)
Query: 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYA 60
MKVVALVSGGKDSCYAMMKCIQYGH+IVALANL+P DDSVDELDSYMYQTVGHQI+V YA
Sbjct: 1 MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLLPVDDSVDELDSYMYQTVGHQILVGYA 60
Query: 61 ECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY 120
ECM +PLFRRRI GS+RHQKLSY+MTP DEVEDM++LL+EVKRQIPS+TAVSSGAIASDY
Sbjct: 61 ECMNVPLFRRRIRGSSRHQKLSYQMTPDDEVEDMFVLLSEVKRQIPSITAVSSGAIASDY 120
Query: 121 QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180
QRLRVES+CSRLGLVSLA+LWKQDQ+LLLQ+MI NGI AI VKVAA+GL+P KHLGK++A
Sbjct: 121 QRLRVESICSRLGLVSLAFLWKQDQTLLLQDMIANGIKAILVKVAAIGLDPSKHLGKDLA 180
Query: 181 FLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVL 240
F++PYL KLKE YG NVCGEGGEYETLTLDCPLF NA IVLDE+QVVLHS DSIAPVGVL
Sbjct: 181 FMEPYLLKLKEKYGSNVCGEGGEYETLTLDCPLFTNASIVLDEYQVVLHSPDSIAPVGVL 240
Query: 241 HPLAFHLEYKAGSASLSGSRETENSIQEKTGLVFEVQGECPQNSEAMCLPVAEVTDSVEV 300
HP FHLE K S +S +E++ LV EV G+ P S++ + D VE
Sbjct: 241 HPSTFHLEKKGNPDS--------HSPEEESSLVSEVLGDGPNTSDSTRQRDNGIVDLVEH 292
Query: 301 TDNRLNISRRKKDNTFSICCWLQETQKTSAGLLDDLRVVLKQIESKLVRYGFDWGHVLYI 360
T NRL+ISR +K NTFSICCWL+++ ++S GL +DL VL ++ES+L+++G++W HVLYI
Sbjct: 293 TSNRLHISRAEKHNTFSICCWLEDSSESSKGLKEDLETVLTELESQLLKHGYNWQHVLYI 352
Query: 361 HLYISDMNEFAVANETYVKFITHEKCPCGVPSRSTIELPLLEVGLGKAYIEVLVANDQSK 420
HLYISDM+EFAVANETYVKFIT EKCP GVPSRSTIELPL++ GLGKAYIEVLVAND+SK
Sbjct: 353 HLYISDMSEFAVANETYVKFITQEKCPFGVPSRSTIELPLVQAGLGKAYIEVLVANDESK 412
Query: 421 RVLHVQSISCWAPSCIGPYSQATLHKEVLQMAGQLGLDPPTMTLCNGGPTVELEQALQNS 480
RVLHVQSISCWAPSCIGPYSQATLH+ VL MAGQLGLDPPTM L G EL QAL NS
Sbjct: 413 RVLHVQSISCWAPSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNS 472
Query: 481 EAVAKCFNCSISTSAIYFVVYCSTYVASSERLKIQEKLDAFLKQMRVWHFEERSMSKVLD 540
EA+A+ FNCSIS+SAI FVV+CS SER ++ EK FL + R + VLD
Sbjct: 473 EAIAESFNCSISSSAILFVVFCSARTKQSERNQLHEKFVTFLGLAK----SSRRVQNVLD 528
Query: 541 PIFLFVLASNLPKSALVEIKPILYVTDDSETVSEIVQDLSCMKAPLHWGFQHADWHESCF 600
P+FL++L +LPK ALVE+KPILYV +D++T E +D S WG++ WH+ C
Sbjct: 529 PMFLYILVPDLPKRALVEVKPILYVEEDTDTEDETSRDQSGEGHYSIWGYKPEKWHQDCV 588
Query: 601 QKCVVHEKICAVILSITCEIAARICSE 627
QK VV K+C +LSI+ E+ ++ E
Sbjct: 589 QKRVVDGKVCVAVLSISAELMRKLQGE 615
|
|
| ZFIN|ZDB-GENE-050227-15 atpbd4 "ATP binding domain 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0278373 DDB_G0278373 "endoribonuclease L-PSP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC577.12 mug71 "diphthamide synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7L8W6 ATPBD4 "Diphthine--ammonia ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1310006 Atpbd4 "ATP binding domain 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2HJF5 ATPBD4 "Diphthine--ammonia ligase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1913882 Atpbd4 "ATP binding domain 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0002720 orf19.839 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AHF8 CaO19.839 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 742 | |||
| cd01994 | 194 | cd01994, Alpha_ANH_like_IV, This is a subfamily of | 4e-92 | |
| COG2102 | 223 | COG2102, COG2102, Predicted ATPases of PP-loop sup | 7e-70 | |
| TIGR00290 | 223 | TIGR00290, MJ0570_dom, MJ0570-related uncharacteri | 7e-57 | |
| TIGR03679 | 218 | TIGR03679, arCOG00187, arCOG00187 universal archae | 9e-55 | |
| pfam01902 | 220 | pfam01902, ATP_bind_4, ATP-binding region | 1e-43 | |
| TIGR00289 | 222 | TIGR00289, TIGR00289, TIGR00289 family protein | 9e-38 | |
| cd06156 | 118 | cd06156, eu_AANH_C_2, A group of hypothetical euka | 4e-23 | |
| cd06155 | 101 | cd06155, eu_AANH_C_1, A group of hypothetical euka | 2e-17 | |
| TIGR00004 | 124 | TIGR00004, TIGR00004, reactive intermediate/imine | 1e-11 | |
| pfam01042 | 120 | pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | 2e-10 | |
| cd00448 | 107 | cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, | 9e-09 | |
| TIGR00004 | 124 | TIGR00004, TIGR00004, reactive intermediate/imine | 5e-06 | |
| cd06150 | 105 | cd06150, YjgF_YER057c_UK114_like_2, This group of | 5e-06 | |
| pfam01042 | 120 | pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | 7e-06 | |
| cd00448 | 107 | cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, | 9e-06 | |
| COG0251 | 130 | COG0251, TdcF, Putative translation initiation inh | 1e-05 | |
| COG0251 | 130 | COG0251, TdcF, Putative translation initiation inh | 2e-04 | |
| PRK11401 | 129 | PRK11401, PRK11401, putative endoribonuclease L-PS | 3e-04 | |
| cd06151 | 126 | cd06151, YjgF_YER057c_UK114_like_3, This group of | 0.001 |
| >gnl|CDD|238952 cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 4e-92
Identities = 108/213 (50%), Positives = 134/213 (62%), Gaps = 19/213 (8%)
Query: 2 KVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAE 61
KVVAL+SGGKDSCYA+ + ++ GH++VAL NL P + S MY TV H+++ AE
Sbjct: 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEG-----SSMMYHTVNHELLELQAE 55
Query: 62 CMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQ 121
MG+PL R I G DEVED+ LL ++K + V AV GAI S+YQ
Sbjct: 56 AMGIPLIRIEISG-----------EEEDEVEDLKELLRKLKEE--GVDAVVFGAILSEYQ 102
Query: 122 RLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIAF 181
R RVE VC RLGL LA LW +DQ LL+EMI G AI +KVAA GL+ LG+EI
Sbjct: 103 RTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAAEGLDE-SWLGREIDE 161
Query: 182 LDPYLHKLKESYGINVCGEGGEYETLTLDCPLF 214
+ L +L E YG++ CGEGGEYETL LD PLF
Sbjct: 162 MFIELLELNEKYGVDPCGEGGEYETLVLDGPLF 194
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. Length = 194 |
| >gnl|CDD|225013 COG2102, COG2102, Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|232907 TIGR00290, MJ0570_dom, MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
| >gnl|CDD|188368 TIGR03679, arCOG00187, arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >gnl|CDD|202036 pfam01902, ATP_bind_4, ATP-binding region | Back alignment and domain information |
|---|
| >gnl|CDD|129390 TIGR00289, TIGR00289, TIGR00289 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|100013 cd06156, eu_AANH_C_2, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >gnl|CDD|100012 cd06155, eu_AANH_C_1, A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | Back alignment and domain information |
|---|
| >gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase | Back alignment and domain information |
|---|
| >gnl|CDD|100007 cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP | Back alignment and domain information |
|---|
| >gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|105214 PRK11401, PRK11401, putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100008 cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| KOG2316 | 277 | consensus Predicted ATPase (PP-loop superfamily) [ | 100.0 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 100.0 | |
| TIGR00290 | 223 | MJ0570_dom MJ0570-related uncharacterized domain. | 100.0 | |
| TIGR00289 | 222 | conserved hypothetical protein TIGR00289. Homologo | 100.0 | |
| PF01902 | 218 | ATP_bind_4: ATP-binding region; InterPro: IPR00276 | 100.0 | |
| cd01994 | 194 | Alpha_ANH_like_IV This is a subfamily of Adenine n | 100.0 | |
| TIGR03679 | 218 | arCOG00187 arCOG00187 universal archaeal metal-bin | 100.0 | |
| KOG2317 | 138 | consensus Putative translation initiation inhibito | 99.92 | |
| COG0251 | 130 | TdcF Putative translation initiation inhibitor, yj | 99.9 | |
| TIGR00004 | 124 | endoribonuclease L-PSP, putative. This protein was | 99.9 | |
| PRK11401 | 129 | putative endoribonuclease L-PSP; Provisional | 99.89 | |
| PF01042 | 121 | Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: I | 99.89 | |
| TIGR03610 | 127 | RutC pyrimidine utilization protein C. This protei | 99.88 | |
| cd06154 | 119 | YjgF_YER057c_UK114_like_6 This group of proteins b | 99.86 | |
| cd06152 | 114 | YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 | 99.86 | |
| cd06156 | 118 | eu_AANH_C_2 A group of hypothetical eukaryotic pro | 99.85 | |
| cd02199 | 142 | YjgF_YER057c_UK114_like_1 This group of proteins b | 99.83 | |
| cd06150 | 105 | YjgF_YER057c_UK114_like_2 This group of proteins b | 99.82 | |
| cd02198 | 111 | YjgH_like YjgH belongs to a large family of YjgF/Y | 99.81 | |
| cd00448 | 107 | YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 | 99.78 | |
| cd06153 | 114 | YjgF_YER057c_UK114_like_5 This group of proteins b | 99.76 | |
| cd06151 | 126 | YjgF_YER057c_UK114_like_3 This group of proteins b | 99.71 | |
| cd06155 | 101 | eu_AANH_C_1 A group of hypothetical eukaryotic pro | 99.71 | |
| cd06155 | 101 | eu_AANH_C_1 A group of hypothetical eukaryotic pro | 99.62 | |
| cd06150 | 105 | YjgF_YER057c_UK114_like_2 This group of proteins b | 99.61 | |
| cd06152 | 114 | YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 | 99.58 | |
| COG0251 | 130 | TdcF Putative translation initiation inhibitor, yj | 99.57 | |
| TIGR03610 | 127 | RutC pyrimidine utilization protein C. This protei | 99.56 | |
| PRK11401 | 129 | putative endoribonuclease L-PSP; Provisional | 99.53 | |
| cd06154 | 119 | YjgF_YER057c_UK114_like_6 This group of proteins b | 99.52 | |
| cd02198 | 111 | YjgH_like YjgH belongs to a large family of YjgF/Y | 99.49 | |
| PF01042 | 121 | Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: I | 99.49 | |
| TIGR00004 | 124 | endoribonuclease L-PSP, putative. This protein was | 99.46 | |
| cd00448 | 107 | YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 | 99.42 | |
| TIGR00032 | 394 | argG argininosuccinate synthase. argG in bacteria, | 99.42 | |
| cd06153 | 114 | YjgF_YER057c_UK114_like_5 This group of proteins b | 99.41 | |
| PF14588 | 148 | YjgF_endoribonc: YjgF/chorismate_mutase-like, puta | 99.41 | |
| cd02199 | 142 | YjgF_YER057c_UK114_like_1 This group of proteins b | 99.4 | |
| cd06151 | 126 | YjgF_YER057c_UK114_like_3 This group of proteins b | 99.4 | |
| cd06156 | 118 | eu_AANH_C_2 A group of hypothetical eukaryotic pro | 99.39 | |
| cd01995 | 169 | ExsB ExsB is a transcription regulator related pro | 99.26 | |
| KOG2317 | 138 | consensus Putative translation initiation inhibito | 98.95 | |
| COG0482 | 356 | TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid | 98.86 | |
| PF03054 | 356 | tRNA_Me_trans: tRNA methyl transferase; InterPro: | 98.8 | |
| PRK14561 | 194 | hypothetical protein; Provisional | 98.73 | |
| TIGR00420 | 352 | trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me | 98.71 | |
| PRK00143 | 346 | mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | 98.63 | |
| PRK08349 | 198 | hypothetical protein; Validated | 98.59 | |
| cd01990 | 202 | Alpha_ANH_like_I This is a subfamily of Adenine nu | 98.49 | |
| PRK14665 | 360 | mnmA tRNA-specific 2-thiouridylase MnmA; Provision | 98.47 | |
| PRK08384 | 381 | thiamine biosynthesis protein ThiI; Provisional | 98.39 | |
| TIGR00364 | 201 | exsB protein. This protein family is represented b | 98.38 | |
| PRK13820 | 394 | argininosuccinate synthase; Provisional | 98.38 | |
| TIGR02432 | 189 | lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t | 98.36 | |
| TIGR00268 | 252 | conserved hypothetical protein TIGR00268. The N-te | 98.27 | |
| cd01712 | 177 | ThiI ThiI is required for thiazole synthesis in th | 98.27 | |
| cd01993 | 185 | Alpha_ANH_like_II This is a subfamily of Adenine n | 98.27 | |
| cd01998 | 349 | tRNA_Me_trans tRNA methyl transferase. This family | 98.22 | |
| PRK04527 | 400 | argininosuccinate synthase; Provisional | 98.21 | |
| cd01992 | 185 | PP-ATPase N-terminal domain of predicted ATPase of | 98.19 | |
| PLN00200 | 404 | argininosuccinate synthase; Provisional | 98.19 | |
| TIGR00342 | 371 | thiazole biosynthesis/tRNA modification protein Th | 98.17 | |
| PRK14664 | 362 | tRNA-specific 2-thiouridylase MnmA; Provisional | 98.14 | |
| PF06508 | 209 | QueC: Queuosine biosynthesis protein QueC; InterPr | 98.13 | |
| PRK01565 | 394 | thiamine biosynthesis protein ThiI; Provisional | 98.13 | |
| PF02568 | 197 | ThiI: Thiamine biosynthesis protein (ThiI); InterP | 98.12 | |
| PRK00509 | 399 | argininosuccinate synthase; Provisional | 98.08 | |
| PRK11106 | 231 | queuosine biosynthesis protein QueC; Provisional | 98.01 | |
| COG2117 | 198 | Predicted subunit of tRNA(5-methylaminomethyl-2-th | 97.96 | |
| cd01999 | 385 | Argininosuccinate_Synthase Argininosuccinate synth | 97.95 | |
| PRK00919 | 307 | GMP synthase subunit B; Validated | 97.93 | |
| TIGR00884 | 311 | guaA_Cterm GMP synthase (glutamine-hydrolyzing), C | 97.93 | |
| PRK10696 | 258 | tRNA 2-thiocytidine biosynthesis protein TtcA; Pro | 97.86 | |
| PRK08576 | 438 | hypothetical protein; Provisional | 97.85 | |
| cd01997 | 295 | GMP_synthase_C The C-terminal domain of GMP synthe | 97.85 | |
| PRK01269 | 482 | tRNA s(4)U8 sulfurtransferase; Provisional | 97.81 | |
| PF01171 | 182 | ATP_bind_3: PP-loop family; InterPro: IPR011063 Th | 97.81 | |
| COG0037 | 298 | MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle | 97.71 | |
| cd01986 | 103 | Alpha_ANH_like Adenine nucleotide alpha hydrolases | 97.68 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 97.65 | |
| cd01713 | 173 | PAPS_reductase This domain is found in phosphoaden | 97.65 | |
| cd01996 | 154 | Alpha_ANH_like_III This is a subfamily of Adenine | 97.63 | |
| COG0603 | 222 | Predicted PP-loop superfamily ATPase [General func | 97.62 | |
| PRK05370 | 447 | argininosuccinate synthase; Validated | 97.31 | |
| PRK05253 | 301 | sulfate adenylyltransferase subunit 2; Provisional | 97.22 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 97.21 | |
| PF00764 | 388 | Arginosuc_synth: Arginosuccinate synthase; InterPr | 97.13 | |
| PRK02090 | 241 | phosphoadenosine phosphosulfate reductase; Provisi | 96.79 | |
| TIGR02039 | 294 | CysD sulfate adenylyltransferase, small subunit. I | 96.71 | |
| COG1606 | 269 | ATP-utilizing enzymes of the PP-loop superfamily [ | 96.71 | |
| PLN02347 | 536 | GMP synthetase | 96.68 | |
| TIGR00552 | 250 | nadE NAD+ synthetase. NAD+ synthetase is a nearly | 96.67 | |
| PRK13980 | 265 | NAD synthetase; Provisional | 96.64 | |
| PF01507 | 174 | PAPS_reduct: Phosphoadenosine phosphosulfate reduc | 96.51 | |
| PRK10660 | 436 | tilS tRNA(Ile)-lysidine synthetase; Provisional | 96.43 | |
| KOG2805 | 377 | consensus tRNA (5-methylaminomethyl-2-thiouridylat | 96.41 | |
| COG0137 | 403 | ArgG Argininosuccinate synthase [Amino acid transp | 96.38 | |
| PRK12563 | 312 | sulfate adenylyltransferase subunit 2; Provisional | 96.33 | |
| cd00553 | 248 | NAD_synthase NAD+ synthase is a homodimer, which c | 96.27 | |
| cd01984 | 86 | AANH_like Adenine nucleotide alpha hydrolases supe | 96.21 | |
| COG0301 | 383 | ThiI Thiamine biosynthesis ATP pyrophosphatase [Co | 96.02 | |
| cd01991 | 269 | Asn_Synthase_B_C The C-terminal domain of Asparagi | 95.89 | |
| TIGR00434 | 212 | cysH phosophoadenylyl-sulfate reductase (thioredox | 95.81 | |
| PRK02628 | 679 | nadE NAD synthetase; Reviewed | 95.09 | |
| PRK13794 | 479 | hypothetical protein; Provisional | 94.97 | |
| PRK13795 | 636 | hypothetical protein; Provisional | 94.88 | |
| PRK08557 | 417 | hypothetical protein; Provisional | 94.48 | |
| COG1365 | 255 | Predicted ATPase (PP-loop superfamily) [General fu | 94.4 | |
| PRK00876 | 326 | nadE NAD synthetase; Reviewed | 94.32 | |
| PF00733 | 255 | Asn_synthase: Asparagine synthase; InterPro: IPR00 | 94.3 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 94.19 | |
| PF02540 | 242 | NAD_synthase: NAD synthase; InterPro: IPR022310 NA | 94.17 | |
| TIGR03183 | 447 | DNA_S_dndC putative sulfurtransferase DndC. Member | 93.84 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 93.44 | |
| COG0175 | 261 | CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr | 93.28 | |
| TIGR01536 | 467 | asn_synth_AEB asparagine synthase (glutamine-hydro | 92.17 | |
| PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; | 92.13 | |
| PRK13981 | 540 | NAD synthetase; Provisional | 92.05 | |
| PTZ00323 | 294 | NAD+ synthase; Provisional | 91.94 | |
| PRK06850 | 507 | hypothetical protein; Provisional | 91.91 | |
| TIGR02057 | 226 | PAPS_reductase phosphoadenosine phosphosulfate red | 90.72 | |
| PF14588 | 148 | YjgF_endoribonc: YjgF/chorismate_mutase-like, puta | 90.61 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 89.28 | |
| TIGR00639 | 190 | PurN phosphoribosylglycinamide formyltransferase, | 88.43 | |
| COG3969 | 407 | Predicted phosphoadenosine phosphosulfate sulfotra | 87.93 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 86.34 | |
| PRK00768 | 268 | nadE NAD synthetase; Reviewed | 85.73 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 84.77 | |
| COG0519 | 315 | GuaA GMP synthase, PP-ATPase domain/subunit [Nucle | 84.28 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 84.12 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 83.92 | |
| PF00875 | 165 | DNA_photolyase: DNA photolyase from Prosite.; Inte | 83.78 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 83.07 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 82.67 | |
| TIGR02765 | 429 | crypto_DASH cryptochrome, DASH family. Photolyases | 80.94 | |
| TIGR03556 | 471 | photolyase_8HDF deoxyribodipyrimidine photo-lyase, | 80.25 |
| >KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-88 Score=666.29 Aligned_cols=250 Identities=67% Similarity=1.112 Sum_probs=246.0
Q ss_pred CeEEEEeeCchHHHHHHHHHHHcCCcEEEEEEeecCCCCCCccCcccccccCHHHHHHHHHHcCCCeEEEecCCCccccc
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
||++||+||||||||||++|++.||+||||+|++|+++..+|+||||||||||++++++|+|||+||||+.|+|.+.||.
T Consensus 1 MrvvaLiSGGKDScynmm~cv~~gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~g~s~nq~ 80 (277)
T KOG2316|consen 1 MRVVALISGGKDSCYNMMCCVRLGHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIRGRSINQK 80 (277)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeeccCcccccc
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhCCCceEEEEcccchhhHHHHHHHHHhhcCCeEeeeccccCHHHHHHHHHHcCCcEE
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~Y~~~~~de~e~l~~~L~~vk~~~~~i~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
++|..|++||+||||++|+.+|+++|.++||++|||+|+|||+||||||+||||.+++|||++||++||+||+.+|++||
T Consensus 81 l~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g~~Ai 160 (277)
T KOG2316|consen 81 LQYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSGLDAI 160 (277)
T ss_pred cccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccCccccchhHHHHHhhhhcCCccccCCceeEEEeecCCCCCcceeEEeeeeEEEcCCCCccceeEE
Q 004613 161 TVKVAAMGLEPGKHLGKEIAFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGVL 240 (742)
Q Consensus 161 ii~Va~~gL~~~~~lG~~l~~~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~l 240 (742)
||||||.||+. +||||+|++|++.|.+|+++||+|+|||||||||||+|||+|+ |||++++++++.|++|.++|++++
T Consensus 161 iiKVAAigL~~-khLgksL~em~p~L~~l~~ky~vh~CGEGGEyET~vlDcPlF~-krivld~~evv~hs~~~~~~~~v~ 238 (277)
T KOG2316|consen 161 IIKVAAIGLGR-KHLGKSLDEMQPYLLKLNDKYGVHVCGEGGEYETFVLDCPLFK-KRIVLDEYEVVIHSADEVCPVGVL 238 (277)
T ss_pred EEEEeecccCh-hhhCcCHHHHHHHHHHhhhhhCceecCCCcceeEEEecccchh-heeeeeeeEEeecCccCccceeEE
Confidence 99999999995 7999999999999999999999999999999999999999999 499999999999999999999999
Q ss_pred EeeeeEEEeccc
Q 004613 241 HPLAFHLEYKAG 252 (742)
Q Consensus 241 ~~~~~~l~~k~~ 252 (742)
++.+.+|++|.-
T Consensus 239 ~~~k~~l~~k~~ 250 (277)
T KOG2316|consen 239 RFLKLHLEKKHV 250 (277)
T ss_pred eeeecccccccc
Confidence 999999999854
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
| >TIGR00289 conserved hypothetical protein TIGR00289 | Back alignment and domain information |
|---|
| >PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal | Back alignment and domain information |
|---|
| >cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
| >TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
| >KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00004 endoribonuclease L-PSP, putative | Back alignment and domain information |
|---|
| >PRK11401 putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA [] | Back alignment and domain information |
|---|
| >TIGR03610 RutC pyrimidine utilization protein C | Back alignment and domain information |
|---|
| >cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03610 RutC pyrimidine utilization protein C | Back alignment and domain information |
|---|
| >PRK11401 putative endoribonuclease L-PSP; Provisional | Back alignment and domain information |
|---|
| >cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA [] | Back alignment and domain information |
|---|
| >TIGR00004 endoribonuclease L-PSP, putative | Back alignment and domain information |
|---|
| >cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >TIGR00032 argG argininosuccinate synthase | Back alignment and domain information |
|---|
| >cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D | Back alignment and domain information |
|---|
| >cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function | Back alignment and domain information |
|---|
| >cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains | Back alignment and domain information |
|---|
| >cd01995 ExsB ExsB is a transcription regulator related protein | Back alignment and domain information |
|---|
| >KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 | Back alignment and domain information |
|---|
| >PRK14561 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | Back alignment and domain information |
|---|
| >PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | Back alignment and domain information |
|---|
| >PRK08349 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
| >PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
| >PRK08384 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
| >TIGR00364 exsB protein | Back alignment and domain information |
|---|
| >PRK13820 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain | Back alignment and domain information |
|---|
| >TIGR00268 conserved hypothetical protein TIGR00268 | Back alignment and domain information |
|---|
| >cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway | Back alignment and domain information |
|---|
| >cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
| >cd01998 tRNA_Me_trans tRNA methyl transferase | Back alignment and domain information |
|---|
| >PRK04527 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
| >cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN00200 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI | Back alignment and domain information |
|---|
| >PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
| >PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome | Back alignment and domain information |
|---|
| >PRK01565 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
| >PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell | Back alignment and domain information |
|---|
| >PRK00509 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK11106 queuosine biosynthesis protein QueC; Provisional | Back alignment and domain information |
|---|
| >COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01999 Argininosuccinate_Synthase Argininosuccinate synthase | Back alignment and domain information |
|---|
| >PRK00919 GMP synthase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit | Back alignment and domain information |
|---|
| >PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional | Back alignment and domain information |
|---|
| >PRK08576 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase | Back alignment and domain information |
|---|
| >PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional | Back alignment and domain information |
|---|
| >PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] | Back alignment and domain information |
|---|
| >COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
| >cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
| >cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
| >COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05370 argininosuccinate synthase; Validated | Back alignment and domain information |
|---|
| >PRK05253 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
| >PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 | Back alignment and domain information |
|---|
| >PRK02090 phosphoadenosine phosphosulfate reductase; Provisional | Back alignment and domain information |
|---|
| >TIGR02039 CysD sulfate adenylyltransferase, small subunit | Back alignment and domain information |
|---|
| >COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
| >TIGR00552 nadE NAD+ synthetase | Back alignment and domain information |
|---|
| >PRK13980 NAD synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
| >PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional | Back alignment and domain information |
|---|
| >KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK12563 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
| >cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) | Back alignment and domain information |
|---|
| >cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) | Back alignment and domain information |
|---|
| >COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B | Back alignment and domain information |
|---|
| >TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) | Back alignment and domain information |
|---|
| >PRK02628 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK13794 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13795 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08557 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PRK00876 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
| >PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) | Back alignment and domain information |
|---|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
| >PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 | Back alignment and domain information |
|---|
| >TIGR03183 DNA_S_dndC putative sulfurtransferase DndC | Back alignment and domain information |
|---|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
| >COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
| >PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PRK13981 NAD synthetase; Provisional | Back alignment and domain information |
|---|
| >PTZ00323 NAD+ synthase; Provisional | Back alignment and domain information |
|---|
| >PRK06850 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent | Back alignment and domain information |
|---|
| >PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D | Back alignment and domain information |
|---|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent | Back alignment and domain information |
|---|
| >COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PRK00768 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
| >COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00875 DNA_photolyase: DNA photolyase from Prosite | Back alignment and domain information |
|---|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02765 crypto_DASH cryptochrome, DASH family | Back alignment and domain information |
|---|
| >TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 742 | ||||
| 2d13_A | 227 | Crystal Structure Of Ph1257 From Pyrococcus Horikos | 5e-26 | ||
| 3rjz_A | 237 | X-Ray Crystal Structure Of The Putative N-Type Atp | 1e-20 | ||
| 1oni_A | 138 | Crystal Structure Of A Human P14.5, A Translational | 1e-07 | ||
| 1nq3_A | 136 | Crystal Structure Of The Mammalian Tumor Associated | 2e-07 | ||
| 1x25_A | 128 | Crystal Structure Of A Member Of Yjgf Family From S | 7e-07 | ||
| 1qah_A | 136 | Crystal Structure Of Perchloric Acid Soluble Protei | 2e-06 | ||
| 2dyy_A | 126 | Crystal Structure Of Putative Translation Initiatio | 3e-06 | ||
| 1xrg_A | 156 | Conserved Hypothetical Protein From Clostridium The | 4e-05 | ||
| 2b33_A | 140 | Crystal Structure Of A Putative Endoribonuclease (t | 8e-05 | ||
| 3r0p_A | 127 | Crystal Structure Of L-Psp Putative Endoribonucleas | 1e-04 | ||
| 2uyj_A | 129 | Crystal Structure Of E. Coli Tdcf With Bound Ethyle | 4e-04 | ||
| 2uyn_A | 129 | Crystal Structure Of E. Coli Tdcf With Bound 2-Keto | 7e-04 | ||
| 1qd9_A | 124 | Bacillus Subtilis Yabj Length = 124 | 7e-04 |
| >pdb|2D13|A Chain A, Crystal Structure Of Ph1257 From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|3RJZ|A Chain A, X-Ray Crystal Structure Of The Putative N-Type Atp Pyrophosphatase From Pyrococcus Furiosus, The Northeast Structural Genomics Target Pfr23 Length = 237 | Back alignment and structure |
| >pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational Inhibitor Reveals Different Mode Of Ligand Binding Near The Invariant Residues Of The Yjgf/uk114 Protein Family Length = 138 | Back alignment and structure |
| >pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated Antigen Uk114 Length = 136 | Back alignment and structure |
| >pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From Sulfolobus Tokodaii (st0811) Length = 128 | Back alignment and structure |
| >pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A Translational Inhibitor Length = 136 | Back alignment and structure |
| >pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation Inhibitor Ph0854 From Pyrococcus Horikoshii Length = 126 | Back alignment and structure |
| >pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-2968 Length = 156 | Back alignment and structure |
| >pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215) From Thermotoga Maritima Msb8 At 2.30 A Resolution Length = 140 | Back alignment and structure |
| >pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From Uncultured Organism Length = 127 | Back alignment and structure |
| >pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene Glycol Length = 129 | Back alignment and structure |
| >pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound 2-Ketobutyrate Length = 129 | Back alignment and structure |
| >pdb|1QD9|A Chain A, Bacillus Subtilis Yabj Length = 124 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Length = 237 | Back alignment and structure |
|---|
Score = 224 bits (571), Expect = 2e-68
Identities = 79/252 (31%), Positives = 118/252 (46%), Gaps = 27/252 (10%)
Query: 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYA 60
V L SGGKDS YA+ I+ + L ++ ++ +SYMY T+ + A
Sbjct: 5 ADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENE-----ESYMYHTINANLTDLQA 59
Query: 61 ECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY 120
+G+PL + G EVED+ +L+ +K + + +GA+AS Y
Sbjct: 60 RALGIPLVKGFTQGEK-----------EKEVEDLKRVLSGLK-----IQGIVAGALASKY 103
Query: 121 QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEI- 179
QR R+E V LGL W +D ++E++ G + V V+A GL+ LG+ +
Sbjct: 104 QRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGLDE-SWLGRILD 162
Query: 180 AFLDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239
L L E Y ++V GEGGE+ET LD PLF +IV+D+ + V G
Sbjct: 163 ESALEELITLNEKYKVHVAGEGGEFETFVLDMPLF-KYKIVVDKAKKVWE---PCTSSGK 218
Query: 240 LHPLAFHLEYKA 251
L HLE K
Sbjct: 219 LIIEEAHLESKL 230
|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Length = 123 | Back alignment and structure |
|---|
| >2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1 Length = 123 | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Length = 136 | Back alignment and structure |
|---|
| >1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A Length = 136 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} Length = 127 | Back alignment and structure |
|---|
| >3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} Length = 127 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Length = 134 | Back alignment and structure |
|---|
| >3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6} Length = 134 | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} Length = 125 | Back alignment and structure |
|---|
| >3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} Length = 125 | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Length = 148 | Back alignment and structure |
|---|
| >3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A* Length = 148 | Back alignment and structure |
|---|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Length = 140 | Back alignment and structure |
|---|
| >2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1 Length = 140 | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 126 | Back alignment and structure |
|---|
| >2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii} Length = 126 | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Length = 128 | Back alignment and structure |
|---|
| >1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1 Length = 128 | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Length = 156 | Back alignment and structure |
|---|
| >1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1 Length = 156 | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Length = 138 | Back alignment and structure |
|---|
| >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Length = 138 | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Length = 124 | Back alignment and structure |
|---|
| >1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1 Length = 124 | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Length = 143 | Back alignment and structure |
|---|
| >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Length = 143 | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Length = 153 | Back alignment and structure |
|---|
| >3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus} Length = 153 | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Length = 128 | Back alignment and structure |
|---|
| >1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A Length = 128 | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Length = 153 | Back alignment and structure |
|---|
| >3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae} Length = 153 | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Length = 129 | Back alignment and structure |
|---|
| >1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1 Length = 129 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Length = 124 | Back alignment and structure |
|---|
| >2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A Length = 124 | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Length = 131 | Back alignment and structure |
|---|
| >1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1 Length = 131 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Length = 144 | Back alignment and structure |
|---|
| >2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa} Length = 144 | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Length = 141 | Back alignment and structure |
|---|
| >3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia} Length = 141 | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Length = 149 | Back alignment and structure |
|---|
| >3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis} Length = 149 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium} Length = 124 | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Length = 122 | Back alignment and structure |
|---|
| >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa} Length = 122 | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Length = 128 | Back alignment and structure |
|---|
| >3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A Length = 128 | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Length = 165 | Back alignment and structure |
|---|
| >3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae} Length = 165 | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Length = 126 | Back alignment and structure |
|---|
| >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1 Length = 126 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 742 | ||||
| d2d13a1 | 226 | c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Ar | 5e-71 | |
| d2cwja1 | 116 | d.79.1.1 (A:4-119) Putative endonuclease APE1501 { | 7e-11 | |
| d1qaha_ | 132 | d.79.1.1 (A:) 14.5 kda translational inhibitor pro | 4e-10 | |
| d1x25a1 | 124 | d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Su | 5e-10 | |
| d1xrga_ | 125 | d.79.1.1 (A:) Purine regulatory protein YabJ {Clos | 3e-09 | |
| d2b33a1 | 126 | d.79.1.1 (A:2-127) Putative protein synthesis inhi | 5e-08 | |
| d2cvla1 | 124 | d.79.1.1 (A:1-124) Putative translation intiation | 4e-07 | |
| d1qu9a_ | 127 | d.79.1.1 (A:) Conserved 'hypothetical' protein Yjg | 4e-07 | |
| d2otma1 | 152 | d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Sh | 9e-07 | |
| d1qd9a_ | 124 | d.79.1.1 (A:) Purine regulatory protein YabJ {Baci | 3e-05 | |
| d1jd1a_ | 126 | d.79.1.1 (A:) Highdosage growth inhibitor YER057cp | 5e-05 | |
| d1pf5a_ | 130 | d.79.1.1 (A:) Hypothetical protein YjgH {Escherich | 0.003 |
| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 229 bits (585), Expect = 5e-71
Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 29/251 (11%)
Query: 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYA 60
V L SGGKDS YA+ ++ G ++ L +++ ++ +SYMY T ++ A
Sbjct: 4 ADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENE-----ESYMYHTPNVELTSLQA 58
Query: 61 ECMGLPLFRRRIHGSTRHQKLSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDY 120
+G+P+ + G EVED+ +L +K + +GA+AS Y
Sbjct: 59 RALGIPIIKGFTKGEK-----------EKEVEDLKNVLEGLKVD-----GIVAGALASRY 102
Query: 121 QRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAITVKVAAMGLEPGKHLGKEIA 180
Q+ R+E+V LGL W++D + E+I G + V V+A GL LG+E+
Sbjct: 103 QKERIENVARELGLKVYTPAWEKDPYQYMLEIIKLGFKVVFVAVSAYGL-NESWLGRELN 161
Query: 181 F-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239
+ L KL E YGI++ GEGGE+ET LD P F A+IV+D+ + G
Sbjct: 162 YKNLEELKKLSEKYGIHIAGEGGEFETFVLDMPFF-KAKIVIDDAEKFWDGLS-----GK 215
Query: 240 LHPLAFHLEYK 250
HLE+K
Sbjct: 216 FIIKRAHLEWK 226
|
| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} Length = 116 | Back information, alignment and structure |
|---|
| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} Length = 124 | Back information, alignment and structure |
|---|
| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} Length = 125 | Back information, alignment and structure |
|---|
| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} Length = 126 | Back information, alignment and structure |
|---|
| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} Length = 124 | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} Length = 127 | Back information, alignment and structure |
|---|
| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} Length = 152 | Back information, alignment and structure |
|---|
| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} Length = 124 | Back information, alignment and structure |
|---|
| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 126 | Back information, alignment and structure |
|---|
| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} Length = 130 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| d2d13a1 | 226 | Hypothetical protein PH1257 {Archaeon Pyrococcus h | 100.0 | |
| d1x25a1 | 124 | Hypothetical protein ST0811 {Sulfolobus tokodaii [ | 99.93 | |
| d1qu9a_ | 127 | Conserved 'hypothetical' protein YjgF {Escherichia | 99.93 | |
| d1jd1a_ | 126 | Highdosage growth inhibitor YER057cp (YEO7_YEAST) | 99.92 | |
| d1qd9a_ | 124 | Purine regulatory protein YabJ {Bacillus subtilis | 99.92 | |
| d1qaha_ | 132 | 14.5 kda translational inhibitor protein, L-PSP {R | 99.92 | |
| d2cvla1 | 124 | Putative translation intiation inhibitor TTHA0137 | 99.92 | |
| d2b33a1 | 126 | Putative protein synthesis inhibitor TM0215 {Therm | 99.92 | |
| d1xrga_ | 125 | Purine regulatory protein YabJ {Clostridium thermo | 99.91 | |
| d2cwja1 | 116 | Putative endonuclease APE1501 {Aeropyrum pernix [T | 99.91 | |
| d1pf5a_ | 130 | Hypothetical protein YjgH {Escherichia coli [TaxId | 99.84 | |
| d2otma1 | 152 | Hypothetical protein SO1960 {Shewanella oneidensis | 99.81 | |
| d2ewca1 | 120 | Hypothetical protein SPy2060 {Streptococcus pyogen | 99.78 | |
| d2ewca1 | 120 | Hypothetical protein SPy2060 {Streptococcus pyogen | 99.59 | |
| d1qu9a_ | 127 | Conserved 'hypothetical' protein YjgF {Escherichia | 99.53 | |
| d2cvla1 | 124 | Putative translation intiation inhibitor TTHA0137 | 99.52 | |
| d1qd9a_ | 124 | Purine regulatory protein YabJ {Bacillus subtilis | 99.51 | |
| d1jd1a_ | 126 | Highdosage growth inhibitor YER057cp (YEO7_YEAST) | 99.51 | |
| d2b33a1 | 126 | Putative protein synthesis inhibitor TM0215 {Therm | 99.51 | |
| d1xrga_ | 125 | Purine regulatory protein YabJ {Clostridium thermo | 99.5 | |
| d1x25a1 | 124 | Hypothetical protein ST0811 {Sulfolobus tokodaii [ | 99.49 | |
| d2cwja1 | 116 | Putative endonuclease APE1501 {Aeropyrum pernix [T | 99.44 | |
| d1qaha_ | 132 | 14.5 kda translational inhibitor protein, L-PSP {R | 99.42 | |
| d1pf5a_ | 130 | Hypothetical protein YjgH {Escherichia coli [TaxId | 99.31 | |
| d2otma1 | 152 | Hypothetical protein SO1960 {Shewanella oneidensis | 98.54 | |
| d2c5sa1 | 218 | Thiamine biosynthesis protein ThiI, C-terminal dom | 98.52 | |
| d2pg3a1 | 230 | Queuosine biosynthesis protein QueC {Erwinia carot | 98.34 | |
| d1ni5a1 | 227 | tRNA-Ile-lysidine synthetase, TilS, N-terminal dom | 97.98 | |
| d1wy5a1 | 216 | TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId | 97.75 | |
| d1j20a1 | 165 | Argininosuccinate synthetase, N-terminal domain {T | 97.26 | |
| d1vl2a1 | 168 | Argininosuccinate synthetase, N-terminal domain {T | 96.6 | |
| d1gpma1 | 197 | GMP synthetase, central domain {Escherichia coli [ | 96.4 | |
| d1sura_ | 215 | Phosphoadenylyl sulphate (PAPS) reductase {Escheri | 96.35 | |
| d1zuna1 | 211 | Sulfate adenylyltransferase subunit 2, CysD {Pseud | 96.32 | |
| d1vbka1 | 132 | Hypothetical protein PH1313, C-terminal domain {Ar | 96.1 | |
| d1k92a1 | 188 | Argininosuccinate synthetase, N-terminal domain {E | 95.59 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 95.3 | |
| d1xnga1 | 255 | NH3-dependent NAD+-synthetase {Helicobacter pylori | 95.02 | |
| d1q15a1 | 296 | beta-Lactam synthetase {Pectobacterium carotovorum | 88.72 | |
| d1jgta1 | 299 | beta-Lactam synthetase {Streptomyces clavuligerus | 87.36 | |
| d1ct9a1 | 324 | Asparagine synthetase B, C-terminal domain {Escher | 85.74 | |
| d1dnpa2 | 200 | DNA photolyase {Escherichia coli [TaxId: 562]} | 83.55 |
| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=481.96 Aligned_cols=222 Identities=35% Similarity=0.604 Sum_probs=206.7
Q ss_pred CEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 90999940865799999999991990889998305999988667633444378999999998099869992279755444
Q 004613 1 MKVVALVSGGKDSCYAMMKCIQYGHQIVALANLMPADDSVDELDSYMYQTVGHQIIVSYAECMGLPLFRRRIHGSTRHQK 80 (742)
Q Consensus 1 Mk~val~SGGKDS~~al~~~~~~G~~vv~L~~~~p~~~~~~~~dS~m~q~v~~~~i~~~A~algiPl~~~~i~g~~~~~~ 80 (742)
|||++||||||||+||+++|+++||+|+||+|+.|++. ||+|||+++++++++||++|||||+...+.+.
T Consensus 4 ~~V~vl~SGGKDS~lAl~~a~~~G~eV~~L~t~~~~~~-----~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~----- 73 (226)
T d2d13a1 4 ADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENE-----ESYMYHTPNVELTSLQARALGIPIIKGFTKGE----- 73 (226)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC--------------CCTTHHHHHHHHTCCEEEEEC--C-----
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCC-----CCCCCCCCCHHHHHHHHHHCCCCCEEEECCCC-----
T ss_conf 21999926869999999999985990599999843789-----96716578899999999863898268734786-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEE
Q ss_conf 43458993059999999999885289930999832001667878999874339859640456698999999998699199
Q 004613 81 LSYRMTPGDEVEDMYILLNEVKRQIPSVTAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGINAI 160 (742)
Q Consensus 81 ~~y~~~~~de~e~l~~lL~~~k~~~~~v~~v~~GaI~s~yqr~rve~vc~rlgl~~l~pLW~~d~~~ll~em~~~G~~a~ 160 (742)
.++|++++..++++. ++++|++|||+|+|||.|+|++|.++|+++++|||++||++|+++|++.||+|+
T Consensus 74 ------~e~~~~~l~~~l~~~-----~v~~vv~Gdi~~~~~r~r~e~~c~~~gl~~~~PLW~~d~~~ll~e~i~~G~~ai 142 (226)
T d2d13a1 74 ------KEKEVEDLKNVLEGL-----KVDGIVAGALASRYQKERIENVARELGLKVYTPAWEKDPYQYMLEIIKLGFKVV 142 (226)
T ss_dssp ------TTSHHHHHHHHHHTB-----CCSEEECCCSSCHHHHHHHHHHHHHHTCEEECTTTTCCHHHHHHHHHHTTCEEE
T ss_pred ------CHHHHHHHHHHHHHC-----CCCCEEECCEECHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf ------129999999999860-----725367610003888999986687659489823568898999999998799599
Q ss_pred EEEEECCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCEEE
Q ss_conf 999816998974644841013-0679997434209954558832488862688988632599434699817998444157
Q 004613 161 TVKVAAMGLEPGKHLGKEIAF-LDPYLHKLKESYGINVCGEGGEYETLTLDCPLFVNARIVLDEFQVVLHSADSIAPVGV 239 (742)
Q Consensus 161 ivkVa~~gL~~~~~LG~~l~~-~~~~l~~l~~~~g~~~cGEgGEyeTlvlD~PlF~~~ri~i~~~~~~~~~~~~~~~~~~ 239 (742)
|++|++.||++ +||||+|++ ..+.|.+++++||+|||||||||||||+|||+|++ ||.+++.+++|+.. .||
T Consensus 143 i~~v~~~gL~~-~~lGr~id~~~~~~L~~~~~~~gvdp~GE~GEfhT~V~d~PlF~~-~i~i~~~e~~~~~~-----~g~ 215 (226)
T d2d13a1 143 FVAVSAYGLNE-SWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFETFVLDMPFFKA-KIVIDDAEKFWDGL-----SGK 215 (226)
T ss_dssp EEEECSTTCCG-GGTTCBCCHHHHHHHHHHHHHHCCCTTCGGGTEEEEEEECTTCSE-EEEEEEEEEEECSS-----CEE
T ss_pred EEEECCCCCCH-HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC-CEEEEEEEEEEECC-----EEE
T ss_conf 99972478997-893868568789999999987497766777318899962634576-43677307999798-----789
Q ss_pred EEEEEEEEEEC
Q ss_conf 98412599763
Q 004613 240 LHPLAFHLEYK 250 (742)
Q Consensus 240 l~~~~~~l~~k 250 (742)
+.|++++|++|
T Consensus 216 ~~i~~~~L~~K 226 (226)
T d2d13a1 216 FIIKRAHLEWK 226 (226)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEC
T ss_conf 99999997409
|
| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
| >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor TM0215 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
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| >d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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| >d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein, L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
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| >d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
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| >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
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| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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| >d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
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| >d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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| >d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
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| >d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
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| >d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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