Citrus Sinensis ID: 004618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
Protein Sequence
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHccccccccccHcccccccccccccccccccccccEEEEccccccccccccHHHcccccccccccccccEEEEEcccccccccccccccccEEEEEEEccccccccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MLLFSIFDLIGDLSRLFFLCFTWFraehigtkkAVQIRSHAQKFFSKLEKEALskgvpigqaididippprpkrkprnpyprktctnapmsqigakdgklrsSVSSLrcnqvldlekepicdrpngdekptytiesqkdncsEVFILHQeahcssvssvnknsmptpvglrdscnlrefvpslkevvnqdetreSYVTVELKAnekfgkpdaklalqdngsskplnlenacpsheksvhgekrddvadalptaevqatqnyprhvnvhildgslgtgtqspsdmpmqesifhpigevhgnpnlftnpaasattenesnvpksthqsfptfhppftqfrhdqddyrsFLHISSAFSSLIVSTLLQNPAAHAAASFaatfwpytnmetsadsptcpqggflsrqmssppsMAAIAAATVAAATAWWAAhgllplcapfhapficppacatavssmdtaqvpaaktdkndntppnpalkdhqpdleYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKAtdheknseenelhdsnktknrkqvdrsscgsntpssseveTDALEKqekgkeeskeidpslpatdpgnrrsrsssnitdswkEVSEVGRLAFQALfsrevlpqsfspphdlkdkmqqdnvedkqngnkkdgdkslfdlnsktwgscfghqevekstvsgvennggeglltiglghgklkarrtgfkpykrcsveakenrilntgnqaeekcpkrirvegatt
Flexible Loop (DISEMBL)
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEalskgvpigqaididippprpkrkprnpyprktctnapmsqigakdgklrsSVSSLRCnqvldlekepicdrpngDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPslkevvnqdetreSYVTVelkanekfgkpdaKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEvqatqnyprhVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAaktdkndntppnPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELkatdheknseenelhdsnktknrkqvdrsscgsntpsssevetdalekqekgkeeskeidpslpatdpgnrrsrsssnitdswkevSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEdkqngnkkdgdkSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTiglghgklkarrtgfkpykrcsveakenrilntgnqaeekcpkrirvegatt
Low Complexity Region (SEG)
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIppprpkrkprnpyprkTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPaahaaasfaaTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMaaiaaatvaaatawwaaHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALekqekgkeeskeIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEdkqngnkkdgdkSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
Disordered region (IsUnstruct)
*LLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKL********************************************************************************************CSEVFILHQEAHC********************CNLREFVPSL*****************************************************************************YPRHVNVHILD**************************************************************FTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTN***************************AIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAV**********************************************************************************************************************************************************EVGRLAFQALFS****************************************LNSKTWGSCFGHQEV*******V*NNGGEGLLTIGLGHGKLKARRTGFKPYKRCSV*****************************
Disordered Region (DISOPRED)
*LLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKF***************************PK********************************************************************************************************************************************************************************************PRHVNVH***********************************************************************************************************************************************IAAATVAAATAWWAAHGLLPLCAPFHAPFICP******************************************************************************************************************************************************************VGRLAFQALFSREVL*****************************************WG***********************************ARRTGFKPYKRCSVE*********************RVE****
Disordered Region (DISEMBL)
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIG***********SLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLEN***************DVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAA****************SFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNME********PQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKA*****************************************************************************TDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ***********KDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
Disordered Region (DISPRO)
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRK******************************************************************************************************E**PSLKEVVN**ETRESYVTVELKAN********************************************ALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAAS***************SFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNME*******************SPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDT************************************************************************************************************************************************WKEVSEVGRLAFQALFSREVLPQSFSPP************************KSLFDL*SKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKEN*************PK*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLFSIFDLIGDLSRLFFLCFTWFRAEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESAxxxxxxxxxxxxxxxxxxxxxLHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	741	2.2.26 [Sep-21-2011]
Q6R0H1	645	Protein LHY OS=Arabidopsi	yes	no	0.793	0.911	0.432	3e-94
P92973	608	Protein CCA1 OS=Arabidops	no	no	0.719	0.876	0.369	5e-67
Q54IF9	423	Myb-like protein G OS=Dic	yes	no	0.068	0.120	0.451	1e-06
Q6R0H0	287	Transcription factor ASG4	no	no	0.060	0.156	0.454	4e-06

>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2

 Score =  347 bits (889), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 322/744 (43%), Positives = 405/744 (54%), Gaps = 156/744 (20%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFF+KLEKEA  KG+P+ QA+DI+IPPPR
Sbjct: 36  LEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMS-QIG-AKDGKLRSSVSSLRCNQV-LDLEKEPICDRPNGDE 128
           PKRKP  PYPRK   N   S Q+  AKD KL SS SS + NQ  LDLEK P        E
Sbjct: 96  PKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFS------E 149

Query: 129 KPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVN 188
           K +   E+Q +NCS             VS+VNK  +PT                 K+V  
Sbjct: 150 KTSTGKENQDENCS------------GVSTVNKYPLPT-----------------KQVSG 180

Query: 189 QDETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVAD 248
             ET                             SK   ++NA     + V  + +D   D
Sbjct: 181 DIET-----------------------------SKTSTVDNAV----QDVPKKNKD--KD 205

Query: 249 ALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHGNPNLFTN 306
                 V + QNYP H +  I++G++    Q+ PS M  Q+ +FHP+ E  HG+ NL   
Sbjct: 206 GNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQAT 265

Query: 307 PAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNP 366
            A++ TT        ++HQ+FP  H         QDDYRSFL ISS FS+LI+STLLQNP
Sbjct: 266 TASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIMSTLLQNP 309

Query: 367 AAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAA 426
           AAHAAA+FAA+ WPY ++  S DS         +   SSPPS+ AIAAATVAAATAWWA+
Sbjct: 310 AAHAAATFAASVWPYASVGNSGDS--------STPMSSSPPSITAIAAATVAAATAWWAS 361

Query: 427 HGLLPLCAPFHAPFICPPACATAVSSMDTAQVPA-AKTDKNDNTPPNPALKDHQPDLEYS 485
           HGLLP+CAP  AP  C P    AV +      PA  + D  +NT         QP  + +
Sbjct: 362 HGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENT---------QPFEKQN 404

Query: 486 EALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH--EKNSEENELHDSNKTKNRKQV 543
            ALQ QN ASKS    + DS+E+   KL  + K  D   E+      +HDSN  + +  V
Sbjct: 405 TALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLV 464

Query: 544 DRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLP-ATDPGNRRSRSSSN------I 596
           DRSSCGSNTPS S+ ETDAL+K EK KE+ KE D + P   +  NR+ +   N       
Sbjct: 465 DRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNAT 524

Query: 597 TDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSL-F 655
           TDSWKEVSE GR+AFQALF+RE LPQSFSPP            +  +N N+K  D S+  
Sbjct: 525 TDSWKEVSEEGRIAFQALFARERLPQSFSPP------------QVAENVNRKQSDTSMPL 572

Query: 656 DLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK-LKARRTGFKPYKRCSVEA 714
             N K+  SC   Q               EG++ IG+G  K LK R+TGFKPYKRCS+E 
Sbjct: 573 APNFKSQDSCAADQ---------------EGVVMIGVGTCKSLKTRQTGFKPYKRCSMEV 617

Query: 715 KENRILNTGNQAEEKCPKRIRVEG 738
           KE+++ N  NQ++EK  KR+R+EG
Sbjct: 618 KESQVGNINNQSDEKVCKRLRLEG 641

Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself.
Arabidopsis thaliana (taxid: 3702)

>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1

 Score =  256 bits (654), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 270/731 (36%), Positives = 358/731 (48%), Gaps = 198/731 (27%)

Query: 27  EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCT 86
           EH+ TK AVQIRSHAQKFFSK+EKEA +KGV +GQA+DI IPPPRPKRKP NPYPRKT +
Sbjct: 51  EHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGS 110

Query: 87  NAP-MSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIES--QKDNCSE 143
               MS+ G  DGK           + L  EK    +  N D + +   E   Q+DNCS+
Sbjct: 111 GTILMSKTGVNDGK-----------ESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSD 159

Query: 144 VFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKA 203
            F  HQ  + S+ SS+NK+ + T     ++   REF+PS +E    +  R+         
Sbjct: 160 CFT-HQ--YLSAASSMNKSCIET----SNASTFREFLPSREEGSQNNRVRKE-------- 204

Query: 204 NEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPR 263
                            S+  LN                    A +L     Q  Q YP 
Sbjct: 205 -----------------SNSDLN--------------------AKSLENGNEQGPQTYPM 227

Query: 264 HVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKST 323
           H+ V +  GS            +  S+ HP  E   +P+                     
Sbjct: 228 HIPVLVPLGS-----------SITSSLSHPPSEPDSHPHTVAG----------------D 260

Query: 324 HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTN 383
           +QSFP                             I+STLLQ PA + AA+FA++FWP   
Sbjct: 261 YQSFPNH---------------------------IMSTLLQTPALYTAATFASSFWP--- 290

Query: 384 METSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPF------- 436
            ++S  SP            +SPP++AA+AAATVAAA+AWWAA+GLLPLCAP        
Sbjct: 291 PDSSGGSPV---------PGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTS 341

Query: 437 HAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASK 496
           H P    P+C    +   T Q  + ++ +                 E+SEA +A++S   
Sbjct: 342 HPPSTFGPSCDVEYTKASTLQHGSVQSREQ----------------EHSEASKARSSL-- 383

Query: 497 SLTVLTSDSEESASAKLKMELKATDHEKNSE--ENELHDSNKTKNRKQVDRSSCGSNTPS 554
                  DSE+     ++ + K   HE+ S   E++   S+   +RKQVDRSSCGSNTPS
Sbjct: 384 -------DSED-----VENKSKPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPS 431

Query: 555 SSE-VETDALEKQEKGKE-ESKEI--DPSLPATDPGN-RRSRSSSNITDSWKEVSEVGRL 609
           SS+ VE DA E+QE G   E KE   D + P T   N RRSR SSNITD WK VS+ GR+
Sbjct: 432 SSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITDPWKSVSDEGRI 491

Query: 610 AFQALFSREVLPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQ 669
           AFQALFSREVLPQSF+          ++   +++   ++       DLN     +    Q
Sbjct: 492 AFQALFSREVLPQSFT---------YREEHREEEQQQQEQRYPMALDLNFTAQLTPVDDQ 542

Query: 670 EVEKSTVSGVENNGGEGLLTIGLGHGKLKAR-RTGFKPYKRCSVEAKENRILNTGN--QA 726
           E +++T          G L IGL   KL +R RTGFKPYKRCS+EAKE+RILN       
Sbjct: 543 EEKRNT----------GFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHV 592

Query: 727 EEKCPKRIRVE 737
           E+K PKR+R+E
Sbjct: 593 EQKDPKRMRLE 603

Transcription factor involved in the circadian clock and in the phytochrome regulation. Binds to the promoter regions of APRR1/TOC1 and TCP21/CHE to repress their transcription. Binds to the promoter regions of CAB2A and CAB2B to promote their transcription. Represses both LHY and itself.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 11/62 (17%)

Query: 23  WFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYP 81
           W + E  +G+K  +QIRSHAQK+F K++K    +           IPPPRPKRK   PYP
Sbjct: 63  WKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGE----------RIPPPRPKRKSIQPYP 112

Query: 82  RK 83
           +K
Sbjct: 113 QK 114

Dictyostelium discoideum (taxid: 44689)

>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 10/55 (18%)

Query: 29  IGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRK 83
           +G+K  +QIRSHAQK+F K++K    +           +PPPRPKRK  +PYP+K
Sbjct: 90  VGSKTVIQIRSHAQKYFLKVQKNGTKE----------HLPPPRPKRKANHPYPQK 134

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
255548073	768	conserved hypothetical protein [Ricinus	0.975	0.941	0.671	0.0
51980218	768	late elongated hypocotyl [Castanea sativ	0.971	0.937	0.662	0.0
225453650	771	PREDICTED: protein LHY-like [Vitis vinif	0.968	0.931	0.645	0.0
147856747	857	hypothetical protein VITISV_012722 [Viti	0.968	0.837	0.645	0.0
219687743	768	transcription factor LHY [Populus nigra]	0.977	0.942	0.648	0.0
219687745	764	transcription factor LHY [Populus nigra]	0.973	0.943	0.631	0.0
118488480	764	unknown [Populus trichocarpa]	0.973	0.943	0.634	0.0
224128077	750	predicted protein [Populus trichocarpa]	0.954	0.942	0.624	0.0
224064384	710	predicted protein [Populus trichocarpa]	0.935	0.976	0.641	0.0
356520209	750	PREDICTED: protein LHY [Glycine max]	0.946	0.934	0.605	0.0

>gi|255548073|ref|XP_002515093.1| conserved hypothetical protein [Ricinus communis] gi|223545573|gb|EEF47077.1| conserved hypothetical protein [Ricinus communis]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/731 (67%), Positives = 559/731 (76%), Gaps = 8/731 (1%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFFSKLEKEA++KGVPIGQA+DIDIPPPR
Sbjct: 37  LEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAIAKGVPIGQALDIDIPPPR 96

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRKT      SQ+ AKDGKL S VS  RC QVLDLEKEP+ +R NG EK T
Sbjct: 97  PKRKPSNPYPRKTGAGPTPSQVAAKDGKLPSLVSFPRCTQVLDLEKEPLPERLNGHEKQT 156

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              E+Q DNCSEVF L QEAHCSSVSS NKNS+ T   L++SC+ REFVPSLK+VVNQD 
Sbjct: 157 DATENQGDNCSEVFTLLQEAHCSSVSSANKNSVVTAEALKNSCSFREFVPSLKKVVNQDA 216

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
           T ESYVT+EL+ N+K  KPDAK  +QDNGSSK    E +C  HEK    +K D+   ALP
Sbjct: 217 TNESYVTIELEGNQKLDKPDAKQTVQDNGSSKASKSE-SCLFHEKFDQAKKSDEFNSALP 275

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSP-SDMPMQESIFHPIGEVHGNPNLFTNPAAS 310
           T E++  Q YPRHV VH+L+GSLGT  Q+P SD+  QE IF P GEVHG+PNL+++PAAS
Sbjct: 276 TDEMETMQGYPRHVPVHVLEGSLGTCMQTPTSDVSFQEPIFCPTGEVHGHPNLYSHPAAS 335

Query: 311 ATTENESNVPKS-THQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAH 369
           ATTE+++  P+S THQSFP+F PPF   +H+QDDYRSFLHISS FSSLIVSTLLQNPAAH
Sbjct: 336 ATTEHQNTAPRSSTHQSFPSF-PPFNSTQHNQDDYRSFLHISSTFSSLIVSTLLQNPAAH 394

Query: 370 AAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGL 429
           +AASFAATFWPY N+E+SADSP CPQGGF SRQM+S PSMAAIAAATVAAATAWWAAHGL
Sbjct: 395 SAASFAATFWPYANLESSADSPICPQGGFPSRQMNSAPSMAAIAAATVAAATAWWAAHGL 454

Query: 430 LPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQ 489
           LPLCAP HA F CPPA  TAV+S    QVPAAKT++   T  NP L++ Q D+E+S+ LQ
Sbjct: 455 LPLCAPLHAAFTCPPASGTAVASTGAGQVPAAKTERK-LTVENPLLQNQQFDVEHSKVLQ 513

Query: 490 AQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCG 549
           AQNSASKSL +  SDSEES   K     KATDHE  +   E+ D +K K RK  DRSSCG
Sbjct: 514 AQNSASKSLEMSLSDSEESGGPKKNTGSKATDHEMATPAPEVQDPSKAKARKPADRSSCG 573

Query: 550 SNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRL 609
           SNT SSSEVETDALEK EKG EE KE D +   T+   RRSRS+S+I+DSWKEVSE GRL
Sbjct: 574 SNTSSSSEVETDALEKLEKGNEELKETDTNPEPTESSCRRSRSNSSISDSWKEVSEEGRL 633

Query: 610 AFQALFSREVLPQSFSPPHDLKDKM-QQDNV-EDKQNGNKKDGDKSLFDLNSKTWGSCFG 667
           AFQALFSREVLPQSFSPPH LK++  Q+D + EDKQN  +K+ +  L  LN    G C  
Sbjct: 634 AFQALFSREVLPQSFSPPHVLKNEARQKDEIEEDKQNTVEKNENALLLSLNGNISGFCTS 693

Query: 668 HQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAE 727
           HQE EK  +   ENNG +GLLT GLGHGKLKARRTGFKPYKRCSVEAKENR+L  G+Q E
Sbjct: 694 HQEAEKIEMPRCENNGEDGLLTFGLGHGKLKARRTGFKPYKRCSVEAKENRMLTAGSQGE 753

Query: 728 EKCPKRIRVEG 738
           EK PKRIRVEG
Sbjct: 754 EKGPKRIRVEG 764

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51980218|gb|AAU20773.1| late elongated hypocotyl [Castanea sativa]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/735 (66%), Positives = 549/735 (74%), Gaps = 15/735 (2%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFFSKLEKEAL KGVPIGQA+DIDIPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQALDIDIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRKT    P SQ+G KDGKL +S SS  C Q LDLEKEP+ ++PNGDEKP 
Sbjct: 96  PKRKPSNPYPRKTSIGVPTSQVGTKDGKLFTSASSSDCKQALDLEKEPLPEKPNGDEKPE 155

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              ++Q DNCSEVF LHQE HCSSVSS N++S+PTPV LR+   LREFVPS+K  + QDE
Sbjct: 156 NAKDNQDDNCSEVFTLHQEVHCSSVSSANRSSVPTPVALRNLNTLREFVPSMKRSITQDE 215

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
           T ESYVT+ELK N+K  K DAK  +QD G+S    L N    HEK + G+K  D+  ALP
Sbjct: 216 TNESYVTIELKGNQKLEKADAKQTIQDTGTSNGSKLGNHNVLHEKPIQGDKTQDLNCALP 275

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSP-SDMPMQESIFHPIGEVHGNPNLFTNPAAS 310
             E+QATQNYPRHV V ++DGSLGT TQ+P SDM  Q+SIFHP+GEVH + N FTNPAAS
Sbjct: 276 MDEMQATQNYPRHVPVQVVDGSLGTCTQTPSSDMSFQDSIFHPMGEVHRHHNPFTNPAAS 335

Query: 311 ATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHA 370
           ATTE+++NVP+S +QSFP FHPPFT  RH+QDDY+SFLH+SS FSSLIVSTL+QNPAAHA
Sbjct: 336 ATTEHQNNVPRSVNQSFPAFHPPFTPIRHNQDDYQSFLHMSSTFSSLIVSTLMQNPAAHA 395

Query: 371 AASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLL 430
           AASFAAT WPY N+E SADSP   QG F  RQM S PSMAAIAAATVAAATAWWAAHGL+
Sbjct: 396 AASFAATVWPYANVEASADSPASTQGVFPPRQMGSTPSMAAIAAATVAAATAWWAAHGLV 455

Query: 431 PLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQA 490
           PLCAP    F C PA   AV   D+ Q PAAKT+   NT   P L+  Q D EYSEA+QA
Sbjct: 456 PLCAPLPTAFTCNPASTAAVPPTDSGQAPAAKTEGEVNTLQTPPLQ--QLDPEYSEAVQA 513

Query: 491 QNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGS 550
           Q+S SK     +SDSEES  AKL    KATDHE      ELHDSNKTK RKQVDRSSCGS
Sbjct: 514 QHSDSKLPIPSSSDSEESGGAKLNSGPKATDHENAVTATELHDSNKTKGRKQVDRSSCGS 573

Query: 551 NTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSN-----ITDSWKEVSE 605
           NT SSS+ ETDALEKQE GKEE KE D +  A D  NRR  SSS+     + DSWK VSE
Sbjct: 574 NTASSSDRETDALEKQEMGKEEPKEPDANHSAADTSNRRCCSSSSRSFSYMNDSWKSVSE 633

Query: 606 VGRLAFQALFSREVLPQSFSPPHDLKDK-MQQDN-VEDKQNGNKKDGDKSLFDLNSKTWG 663
            GRLAFQALFSREVLPQSFSPPHDLK+   Q+DN  +DKQN N+ DG+ SL DLNS+  G
Sbjct: 634 EGRLAFQALFSREVLPQSFSPPHDLKNMGNQKDNTTDDKQNANENDGNASLLDLNSQKSG 693

Query: 664 SCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTG 723
           SC     V++  ++   NN GEGLLTIGL +GKLKARRTGFKPYKRCSVEAKENR+ N  
Sbjct: 694 SC----SVQQGILNFEPNNNGEGLLTIGLAYGKLKARRTGFKPYKRCSVEAKENRVANAS 749

Query: 724 NQAEEKCPKRIRVEG 738
            Q EEK PKRIR+EG
Sbjct: 750 GQGEEKGPKRIRLEG 764

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453650|ref|XP_002267720.1| PREDICTED: protein LHY-like [Vitis vinifera]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/740 (64%), Positives = 558/740 (75%), Gaps = 22/740 (2%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFFSKLEKEAL KGVPIGQAIDI+IPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQAIDIEIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLR-CNQVLDLEKEPICDRPNGDEKP 130
           PKRKP NPYPRKT   AP  Q G KDGKL +SVSS     Q+LDLEK+P+ +RP+GDEKP
Sbjct: 96  PKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSSHPGKQILDLEKDPLPERPSGDEKP 155

Query: 131 TYTIESQ-KDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQ 189
               E+Q +DNCSEVF L QEA C+S+SS NKNS+PTPV LR+SC  REFVP +KE  NQ
Sbjct: 156 GNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSNQ 215

Query: 190 DETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADA 249
           DET ESY+TVE K N+K  KPD +   QD+G SK  NLEN+ PSHEK V  EK D+ + +
Sbjct: 216 DETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQS 275

Query: 250 -----LPTAEVQATQNYPRHVNVHILDGSLGTGTQSPS-DMPMQESIFHPIGEVHGNPNL 303
                 P  E+QA QN+PRHV VH+LDGSLGT TQ+PS +M   ES+ H IG +HG+PNL
Sbjct: 276 ENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGTCTQAPSSEMTYGESLVHQIG-IHGHPNL 334

Query: 304 FTNPAASATTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTL 362
           F NPAASA TE+++N  +S+ HQSFPTFH PF   R +QDDYRSFL ISS FSSLIVSTL
Sbjct: 335 FQNPAASAATEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTL 394

Query: 363 LQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATA 422
           LQNPAAHAAASFAATFWP +NME SADSP+   GGF +RQ++  PSMAAIAAATVAAATA
Sbjct: 395 LQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATA 454

Query: 423 WWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDL 482
           WWAAHG+LPLCAP H  F C PA AT+V   +T Q PAA T++ +NTP     +D Q DL
Sbjct: 455 WWAAHGVLPLCAPLHTGFTCAPASATSVPPTNTGQAPAANTERRENTP-----QDQQLDL 509

Query: 483 EYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEE-NELHDSNKTKNRK 541
           E SEALQAQ+SASKS  + +SDSEES  AK   E  A D+EKN+    EL+D  K K+RK
Sbjct: 510 ECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRK 569

Query: 542 QVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWK 601
           QVDRSSCGSNTPSSSEVETDALEK E G+EE KE D +  A +  NRR RS+S + +SWK
Sbjct: 570 QVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSILNESWK 629

Query: 602 EVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ--DNVEDKQNGNKKDGDKSLFDLNS 659
           EVSE GRLAF+ALFSREVLPQSFSPPHDLK+K  Q  D +E++Q G++K  +    DLNS
Sbjct: 630 EVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNS 689

Query: 660 KTWGSCFGHQEVEKSTVSGVEN-NGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENR 718
           K WG C  HQ+VEK+ +  +EN N  EGLLTIGLG+GK+K RRTGFKPYKRCSVEA ++R
Sbjct: 690 KAWGPCSSHQDVEKNGL--MENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSR 747

Query: 719 ILNTGNQAEEKCPKRIRVEG 738
           + N  +Q EEK PKRIR+EG
Sbjct: 748 VTNCCSQGEEKGPKRIRLEG 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856747|emb|CAN81352.1| hypothetical protein VITISV_012722 [Vitis vinifera]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/740 (64%), Positives = 558/740 (75%), Gaps = 22/740 (2%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFFSKLEKEAL KGVPIGQAIDI+IPPPR
Sbjct: 122 LEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPIGQAIDIEIPPPR 181

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLR-CNQVLDLEKEPICDRPNGDEKP 130
           PKRKP NPYPRKT   AP  Q G KDGKL +SVSS     Q+LDLEK+P+ +RP+GDEKP
Sbjct: 182 PKRKPSNPYPRKTGVAAPTLQAGTKDGKLLASVSSXHPGKQILDLEKDPLPERPSGDEKP 241

Query: 131 TYTIESQ-KDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQ 189
               E+Q +DNCSEVF L QEA C+S+SS NKNS+PTPV LR+SC  REFVP +KE  NQ
Sbjct: 242 GNENENQDEDNCSEVFTLFQEAPCTSMSSANKNSIPTPVPLRNSCTFREFVPLMKEGSNQ 301

Query: 190 DETRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADA 249
           DET ESY+TVE K N+K  KPD +   QD+G SK  NLEN+ PSHEK V  EK D+ + +
Sbjct: 302 DETNESYITVEPKGNQKLDKPDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQS 361

Query: 250 -----LPTAEVQATQNYPRHVNVHILDGSLGTGTQSPS-DMPMQESIFHPIGEVHGNPNL 303
                 P  E+QA QN+PRHV VH+LDGSLGT TQ+PS +M   ES+ H IG +HG+PNL
Sbjct: 362 ENFGSQPKNEMQAAQNFPRHVPVHVLDGSLGTCTQAPSSEMTYGESLVHQIG-IHGHPNL 420

Query: 304 FTNPAASATTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTL 362
           F NPAASA TE+++N  +S+ HQSFPTFH PF   R +QDDYRSFL ISS FSSLIVSTL
Sbjct: 421 FQNPAASAATEHQNNGSRSSIHQSFPTFHTPFGPIRSNQDDYRSFLQISSTFSSLIVSTL 480

Query: 363 LQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATA 422
           LQNPAAHAAASFAATFWP +NME SADSP+   GGF +RQ++  PSMAAIAAATVAAATA
Sbjct: 481 LQNPAAHAAASFAATFWPCSNMEASADSPSGTIGGFPARQINPAPSMAAIAAATVAAATA 540

Query: 423 WWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDL 482
           WWAAHG+LPLCAP H  F C PA AT+V   +T Q PAA T++ +NTP     +D Q DL
Sbjct: 541 WWAAHGVLPLCAPLHTGFTCAPASATSVPPTNTGQAPAANTERRENTP-----QDQQLDL 595

Query: 483 EYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEE-NELHDSNKTKNRK 541
           E SEALQAQ+SASKS  + +SDSEES  AK   E  A D+EKN+    EL+D  K K+RK
Sbjct: 596 ECSEALQAQHSASKSPAMSSSDSEESGGAKPNTESTAPDNEKNTTAVTELNDPTKMKSRK 655

Query: 542 QVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWK 601
           QVDRSSCGSNTPSSSEVETDALEK E G+EE KE D +  A +  NRR RS+S + +SWK
Sbjct: 656 QVDRSSCGSNTPSSSEVETDALEKHENGEEECKEADVNQAAGEANNRRCRSTSILNESWK 715

Query: 602 EVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ--DNVEDKQNGNKKDGDKSLFDLNS 659
           EVSE GRLAF+ALFSREVLPQSFSPPHDLK+K  Q  D +E++Q G++K  +    DLNS
Sbjct: 716 EVSEEGRLAFRALFSREVLPQSFSPPHDLKNKGLQNKDFIENEQGGDEKHENALQLDLNS 775

Query: 660 KTWGSCFGHQEVEKSTVSGVEN-NGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENR 718
           K WG C  HQ+VEK+ +  +EN N  EGLLTIGLG+GK+K RRTGFKPYKRCSVEA ++R
Sbjct: 776 KAWGPCSSHQDVEKNGL--MENDNREEGLLTIGLGYGKIKGRRTGFKPYKRCSVEAIDSR 833

Query: 719 ILNTGNQAEEKCPKRIRVEG 738
           + N  +Q EEK PKRIR+EG
Sbjct: 834 VTNCCSQGEEKGPKRIRLEG 853

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219687743|dbj|BAH09382.1| transcription factor LHY [Populus nigra] gi|219687747|dbj|BAH09384.1| PnLHY1 [Populus nigra]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/729 (64%), Positives = 560/729 (76%), Gaps = 5/729 (0%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK AVQIRSHAQKFFSKLEKEA++KGVPIGQA++IDIPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAVAKGVPIGQALEIDIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRKT    P SQ GAKDGKL +S SS  C +VLDLEKEP  ++PNGDE+PT
Sbjct: 96  PKRKPSNPYPRKTGVGPPASQAGAKDGKLLTSTSSPHCRKVLDLEKEPRPEKPNGDERPT 155

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              E+Q DNCSEVF L QEAHCSSV+SVNKN +P    L+ + + REFVPS K+  N D 
Sbjct: 156 NAKENQDDNCSEVFTLLQEAHCSSVASVNKNCVPALEVLKKTSSFREFVPSPKKG-NDDA 214

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
             ES++TVE +AN+K    DA   + DNG+ K    EN+C  HE     +K DD   +LP
Sbjct: 215 CNESFITVEHEANQKLDSSDANQTVLDNGTVKASKSENSCSLHEILFQQKKSDDFIGSLP 274

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASA 311
           T E+QA QNYPRHV VH+LDGSLGT  ++PSD+  Q+S+FHP+G++   P L+++PA S 
Sbjct: 275 TDEMQAMQNYPRHVPVHVLDGSLGTCIETPSDLSFQDSMFHPVGDIPACPILYSHPAGST 334

Query: 312 TTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHA 370
           TT++ +N+P+S+ HQSFP F PPFT   H+QDDYRSFLHISS FSS +VSTLLQNPAAHA
Sbjct: 335 TTDHPTNLPRSSMHQSFPFFPPPFTPTHHNQDDYRSFLHISSTFSSPVVSTLLQNPAAHA 394

Query: 371 AASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLL 430
           AASFAATFWPY N+E+SADSP C Q GF S Q++S PSMAAIAAATVAAATAWWAAHGLL
Sbjct: 395 AASFAATFWPYGNVESSADSPACAQEGFQSGQINSAPSMAAIAAATVAAATAWWAAHGLL 454

Query: 431 PLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQA 490
           P+CAP H  F CPPA ATA+ S DT QVP AK ++ + TP NP L+    DLE+SEA+QA
Sbjct: 455 PICAPLHTAFACPPASATAIQSADTDQVPPAKPERKETTPDNPPLQGQIQDLEHSEAVQA 514

Query: 491 QNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGS 550
           QNSASK  T+ +SDSEES   KL    K TD E NS+  E+ DS KTK+RKQVDRSSCGS
Sbjct: 515 QNSASKPPTLSSSDSEESGGTKLNTGPKVTDDELNSKAPEVQDSGKTKSRKQVDRSSCGS 574

Query: 551 NTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLA 610
           NTPSSSE+ETDALEK EKGKEE KE D + PA++   RRSRSSS+++DSWKEVSE GRLA
Sbjct: 575 NTPSSSEIETDALEKTEKGKEEPKEADANHPASESNCRRSRSSSSMSDSWKEVSEEGRLA 634

Query: 611 FQALFSREVLPQSFSPPHDLKDKM-QQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQ 669
           FQALF+RE+LPQSFSPPHDLK KM Q+++ E+K+N ++KDGD SL DLNSKTWG C G+Q
Sbjct: 635 FQALFTREILPQSFSPPHDLKSKMHQKEDTEEKKNPDEKDGDASLLDLNSKTWGYCSGYQ 694

Query: 670 EVEK-STVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEE 728
           E EK + V    N+G EGLLTIGLGHG LKA  TGFKPYKRCS+EAKE+R+  TG Q EE
Sbjct: 695 EGEKNAVVPRCVNDGEEGLLTIGLGHGNLKAHLTGFKPYKRCSLEAKESRMATTGGQGEE 754

Query: 729 KCPKRIRVE 737
           K PKR+R+E
Sbjct: 755 KGPKRLRLE 763

Source: Populus nigra

Species: Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219687745|dbj|BAH09383.1| transcription factor LHY [Populus nigra] gi|219687749|dbj|BAH09385.1| PnLHY2 [Populus nigra]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/730 (63%), Positives = 547/730 (74%), Gaps = 9/730 (1%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK  VQIRSHAQKFFSKLEKEA+ KGVPIGQA+DIDIPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTVVQIRSHAQKFFSKLEKEAIVKGVPIGQALDIDIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRK     P SQ+GAKDGKL +S S   C QVL LEKEP+ ++ NG+E+PT
Sbjct: 96  PKRKPSNPYPRKIGVGPPASQVGAKDGKLLTSASFPCCKQVLGLEKEPLPEKLNGNERPT 155

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              E+Q DNCSEVF L QE HCSSV SVNKNS+PT   L+ +   REFV S KE  N D 
Sbjct: 156 DAKENQDDNCSEVFSLLQEPHCSSVPSVNKNSVPTLDILKKASPFREFVSSPKEG-NHDA 214

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
           + +S VTV+L AN+K    D K   QDN +S+    EN C   EK    +K DD   AL 
Sbjct: 215 SNQSSVTVDLGANQKLDNSDVK---QDNSTSEFSKSENFCSFSEKLFQQKKSDDFIGALR 271

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSP-SDMPMQESIFHPIGEVHGNPNLFTNPAAS 310
           T  +QA QNYPRHV VH+LDGSLGT  Q+P SD   QESIFHPIGE+   PNL+++PAAS
Sbjct: 272 TDGMQAMQNYPRHVPVHVLDGSLGTCMQTPPSDFSFQESIFHPIGEIPACPNLYSHPAAS 331

Query: 311 ATTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAH 369
            TT++ +  P+S+ HQSFP+F PPFT   H+QDDYRSFLH+SS FSSL+VS+LLQNPAAH
Sbjct: 332 KTTDHPNISPRSSMHQSFPSFPPPFTPTHHNQDDYRSFLHMSSTFSSLVVSSLLQNPAAH 391

Query: 370 AAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGL 429
           AAASFA+TFWPY N+E+SADSP C QGGF SRQ++S PSMAAI AATVAAATAWW AHGL
Sbjct: 392 AAASFASTFWPYGNVESSADSPACAQGGFQSRQLNSAPSMAAIVAATVAAATAWWTAHGL 451

Query: 430 LPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQ 489
           LP+CAP H  F CPPA ATA+ S+DT QV A KT++ + T  NP+L+    D E++EALQ
Sbjct: 452 LPMCAPLHTSFACPPASATAIQSVDTGQVSATKTERKE-TAENPSLQGQIQDQEHTEALQ 510

Query: 490 AQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCG 549
           AQNSASKS  + +SDSEES   +L    +  DHE  ++ +E+ DS+KTK+RK +DRSSCG
Sbjct: 511 AQNSASKSPKITSSDSEESGGPQLNTRPEVIDHELTTKPHEVQDSSKTKSRKLIDRSSCG 570

Query: 550 SNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRL 609
           SNTPSSSE+ETDALEK EKG EE KE D + PA++  +R SRSSS++ DSWKEVSE GRL
Sbjct: 571 SNTPSSSEIETDALEKAEKGTEEPKEDDANHPASESSSRHSRSSSSMNDSWKEVSEEGRL 630

Query: 610 AFQALFSREVLPQSFSPPHDLKDKMQQ-DNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGH 668
           AFQ LF+REVLPQSFSPPHDLK KM Q ++  +K++ ++KDGD SL +LN+KTW  C GH
Sbjct: 631 AFQTLFAREVLPQSFSPPHDLKSKMHQNEDAGEKKDADEKDGDASLINLNTKTWECCSGH 690

Query: 669 QEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEE 728
           QE EK+ +S  EN G EGLLTIGLGHGKLK RRTGFKPYKRCS+EAKE+R      Q EE
Sbjct: 691 QEGEKNALSRCENYGEEGLLTIGLGHGKLKVRRTGFKPYKRCSLEAKESRTGTGSGQGEE 750

Query: 729 KCPKRIRVEG 738
           K PKR+R+EG
Sbjct: 751 KGPKRLRLEG 760

Source: Populus nigra

Species: Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488480|gb|ABK96054.1| unknown [Populus trichocarpa]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/730 (63%), Positives = 546/730 (74%), Gaps = 9/730 (1%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK  VQIRSHAQKFFSKLEKEA+ KGVPIGQA+DIDIPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTVVQIRSHAQKFFSKLEKEAVVKGVPIGQALDIDIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRK     P SQ+GAKDGKL +S S   C QVL LEKEP+ ++ NGDE+PT
Sbjct: 96  PKRKPSNPYPRKIGVGPPASQVGAKDGKLLTSASFPCCKQVLGLEKEPLPEKLNGDERPT 155

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              E+Q DNCSEVF L QE HCSSV S+NKNS+PT   L+ +   REFV S KE  N D 
Sbjct: 156 NAKENQDDNCSEVFSLLQEPHCSSVPSINKNSVPTLDILKKASPFREFVSSPKEG-NHDA 214

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
           + +S VTVEL AN+K    D K   QDN +S+    EN C   EK    +K DD   AL 
Sbjct: 215 SNQSSVTVELGANQKLDNSDVK---QDNSTSEFSKSENFCSFSEKLFQQKKSDDFIGALR 271

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSP-SDMPMQESIFHPIGEVHGNPNLFTNPAAS 310
           T  +QA QNYPRHV VH+LDGSLGT  Q+P SD   QES+FHPIGE+   PNL+++PAAS
Sbjct: 272 TDGMQAMQNYPRHVPVHVLDGSLGTCMQTPPSDFSFQESMFHPIGEIPACPNLYSHPAAS 331

Query: 311 ATTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAH 369
            TT++ +  P+S+ HQSFP+F PPFT   H+QDDYRSFLHISS FSSL+VS+LLQNPAAH
Sbjct: 332 KTTDHPNISPRSSMHQSFPSFPPPFTPTHHNQDDYRSFLHISSTFSSLVVSSLLQNPAAH 391

Query: 370 AAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGL 429
           AAASFA+TFWPY N+E+SADSP C QGGF SRQ++S PSMAAI AATVAAATAWW AHGL
Sbjct: 392 AAASFASTFWPYGNVESSADSPACAQGGFQSRQLNSAPSMAAIVAATVAAATAWWTAHGL 451

Query: 430 LPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQ 489
           LP+CAP H  F CPPA ATA+ S+DT QV A KT++ + T  NP+L+      E++EALQ
Sbjct: 452 LPMCAPLHTSFACPPASATAIQSVDTGQVSATKTERKE-TAENPSLQGQIQGPEHTEALQ 510

Query: 490 AQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCG 549
           AQNSASKS  + +SDSEES   KL    +  DHE  ++ +E+ DS+KTK+RK +DRSSCG
Sbjct: 511 AQNSASKSPKITSSDSEESGGPKLNTGPEVIDHELTTKPHEVQDSSKTKSRKLIDRSSCG 570

Query: 550 SNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRL 609
           SNTPSSSE+ETDALEK EKG EE KE D + PA++  +R SRSSS++ DSWKEVSE GRL
Sbjct: 571 SNTPSSSEIETDALEKAEKGTEEPKEDDANHPASESSSRHSRSSSSMNDSWKEVSEEGRL 630

Query: 610 AFQALFSREVLPQSFSPPHDLKDKMQQ-DNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGH 668
           AFQALF+REVLPQSFSPPHDLK KM Q ++  +K++ ++KDGD SL +LNSKTW  C GH
Sbjct: 631 AFQALFAREVLPQSFSPPHDLKSKMHQNEDAGEKKDADEKDGDASLINLNSKTWECCSGH 690

Query: 669 QEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEE 728
           QE EK+ +S  EN G E LLTIGLGHGKLK RRTGFKPYKRCS+EAKE+R      Q EE
Sbjct: 691 QEGEKNALSRCENYGEEELLTIGLGHGKLKVRRTGFKPYKRCSLEAKESRTGTGSGQGEE 750

Query: 729 KCPKRIRVEG 738
           K PKR+R+EG
Sbjct: 751 KGPKRLRLEG 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128077|ref|XP_002320238.1| predicted protein [Populus trichocarpa] gi|222861011|gb|EEE98553.1| predicted protein [Populus trichocarpa]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/730 (62%), Positives = 535/730 (73%), Gaps = 23/730 (3%)

Query: 13  LSRLFFLCFTWFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPR 71
           L  L      W R E HIGTK  VQIRSHAQKFFSKLEKEA+ KGVPIGQA+DIDIPPPR
Sbjct: 36  LEALKLYGRAWQRIEEHIGTKTVVQIRSHAQKFFSKLEKEAVVKGVPIGQALDIDIPPPR 95

Query: 72  PKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPT 131
           PKRKP NPYPRK     P SQ+GAKDGKL +S S   C QVL LEKEP+ ++ NGDE+PT
Sbjct: 96  PKRKPSNPYPRKIGVGPPASQVGAKDGKLLTSASFPCCKQVLGLEKEPLPEKLNGDERPT 155

Query: 132 YTIESQKDNCSEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDE 191
              E+Q DNCSEVF L QE HCSSV S+NKNS+PT   L+ +   REFV S KE  N D 
Sbjct: 156 NAKENQDDNCSEVFSLLQEPHCSSVPSINKNSVPTLDILKKASPFREFVSSPKEG-NHDA 214

Query: 192 TRESYVTVELKANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALP 251
           + +S VTVEL AN+K    D K   QDN +S+    EN C   EK    +K DD   AL 
Sbjct: 215 SNQSSVTVELGANQKLDNSDVK---QDNSTSEFSKSENFCSFSEKLFQQKKSDDFIGALR 271

Query: 252 TAEVQATQNYPRHVNVHILDGSLGTGTQSP-SDMPMQESIFHPIGEVHGNPNLFTNPAAS 310
           T  +QA QNYPRHV VH+LDGSLGT  Q+P SD   QES+FHPIGE+   PNL+++PAAS
Sbjct: 272 TDGMQAMQNYPRHVPVHVLDGSLGTCMQTPPSDFSFQESMFHPIGEIPACPNLYSHPAAS 331

Query: 311 ATTENESNVPKST-HQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAH 369
            TT++ +  P+S+ HQSFP+F PPFT   H+QDDYRSFLHISS FSSL+VS+LLQNPAAH
Sbjct: 332 KTTDHPNISPRSSMHQSFPSFPPPFTPTHHNQDDYRSFLHISSTFSSLVVSSLLQNPAAH 391

Query: 370 AAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGL 429
           AAASFA+TFWPY N+E+SADSP C QGGF SRQ++S PSMAAI AATVAAATAWW AHGL
Sbjct: 392 AAASFASTFWPYGNVESSADSPACAQGGFQSRQLNSAPSMAAIVAATVAAATAWWTAHGL 451

Query: 430 LPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQ 489
           LP+CAP H  F CPPA ATA+ S                T  NP+L+      E++EALQ
Sbjct: 452 LPMCAPLHTSFACPPASATAIQS---------------ETAENPSLQGQIQGPEHTEALQ 496

Query: 490 AQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCG 549
           AQNSASKS  + +SDSEES   KL    +  DHE  ++ +E+ DS+KTK+RK +DRSSCG
Sbjct: 497 AQNSASKSPKITSSDSEESGGPKLNTGPEVIDHELTTKPHEVQDSSKTKSRKLIDRSSCG 556

Query: 550 SNTPSSSEVETDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRL 609
           SNTPSSSE+ETDALEK EKG EE KE D + PA++  +R SRSSS++ DSWKEVSE GRL
Sbjct: 557 SNTPSSSEIETDALEKAEKGTEEPKEDDANHPASESSSRHSRSSSSMNDSWKEVSEEGRL 616

Query: 610 AFQALFSREVLPQSFSPPHDLKDKMQQ-DNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGH 668
           AFQALF+REVLPQSFSPPHDLK KM Q ++  +K++ ++KDGD SL +LNSKTW  C GH
Sbjct: 617 AFQALFAREVLPQSFSPPHDLKSKMHQNEDAGEKKDADEKDGDASLINLNSKTWECCSGH 676

Query: 669 QEVEKSTVSGVENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEE 728
           QE EK+ +S  EN G E LLTIGLGHGKLK RRTGFKPYKRCS+EAKE+R      Q EE
Sbjct: 677 QEGEKNALSRCENYGEEELLTIGLGHGKLKVRRTGFKPYKRCSLEAKESRTGTGSGQGEE 736

Query: 729 KCPKRIRVEG 738
           K PKR+R+EG
Sbjct: 737 KGPKRLRLEG 746

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064384|ref|XP_002301449.1| predicted protein [Populus trichocarpa] gi|222843175|gb|EEE80722.1| predicted protein [Populus trichocarpa]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/697 (64%), Positives = 538/697 (77%), Gaps = 4/697 (0%)

Query: 44  FFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSS 103
           + ++LEKEA++KGVPIG+A++IDIPPPRPKRKP NPYPRKT    P SQ GAKDGKL +S
Sbjct: 10  WITELEKEAVAKGVPIGKALEIDIPPPRPKRKPSNPYPRKTGVGPPASQAGAKDGKLLTS 69

Query: 104 VSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSVSSVNKNS 163
            SS  C +VLDLEKEP  ++PNGDE+PT   E+Q DNCSEVF L QEAHCSSV+SVNKN 
Sbjct: 70  TSSPHCRKVLDLEKEPRPEKPNGDERPTNAKENQDDNCSEVFTLLQEAHCSSVASVNKNC 129

Query: 164 MPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLALQDNGSSK 223
           +P    L+ + + REFVPS K+  N D   ES++TVE +AN+K    DA   + DNG+ K
Sbjct: 130 VPALEVLKKTSSFREFVPSPKKG-NHDACNESFITVEHEANQKLDSSDANQTVLDNGTVK 188

Query: 224 PLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQSPSD 283
               EN+C  HE     +K DD   +LPT E++A QNYPRHV VH+LDGSLGT  ++PSD
Sbjct: 189 ASKSENSCSLHEILFQQKKSDDFIGSLPTDEMKAMQNYPRHVPVHVLDGSLGTCMETPSD 248

Query: 284 MPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKST-HQSFPTFHPPFTQFRHDQD 342
           +  Q+S+FHP+G++   P L+++P  S TT++ +N+P+S+ HQSFP F PPFT   H+QD
Sbjct: 249 LSFQDSMFHPVGDIPACPILYSHPTGSTTTDHPTNLPRSSMHQSFPFFPPPFTPTHHNQD 308

Query: 343 DYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQ 402
           DYRSFLHISS FSS +VSTLLQNPAAHAAASFAATFWPY N+E+SADSP C Q GF S Q
Sbjct: 309 DYRSFLHISSTFSSPVVSTLLQNPAAHAAASFAATFWPYGNVESSADSPACAQEGFQSGQ 368

Query: 403 MSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAK 462
           ++S PSMAAIAAATVAAATAWWAAHGLLP+CAP H  F CPPA ATA+ S DT QVP AK
Sbjct: 369 INSAPSMAAIAAATVAAATAWWAAHGLLPICAPLHTAFACPPASATAIQSADTDQVPPAK 428

Query: 463 TDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDH 522
            ++ + TP NP L+    DLE+SEA+QAQNSASK  T+ +SDSEES   KL    K TDH
Sbjct: 429 PERKETTPDNPPLQGQIQDLEHSEAVQAQNSASKPPTLSSSDSEESGGTKLNTAPKVTDH 488

Query: 523 EKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEIDPSLPA 582
           E NS+  E+ DS KTK+RKQVDRSSCGSNTPSSSE+ETDALEK EKGKEE KE D + PA
Sbjct: 489 ELNSKAPEVQDSGKTKSRKQVDRSSCGSNTPSSSEIETDALEKNEKGKEEPKEADANHPA 548

Query: 583 TDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKM-QQDNVED 641
           ++   RRSRSSS+++DSWKEVSE GRLAFQALF+RE LPQSFSPPHDLK KM Q+++ E+
Sbjct: 549 SELNCRRSRSSSSMSDSWKEVSEEGRLAFQALFTRERLPQSFSPPHDLKSKMHQKEDTEE 608

Query: 642 KQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEK-STVSGVENNGGEGLLTIGLGHGKLKAR 700
           K+N ++KDGD SL DLNSKTWG C G+QE EK + V    N+G EGLLTIGLGHG LKA 
Sbjct: 609 KKNPDEKDGDASLLDLNSKTWGYCSGYQEGEKNAVVPRCVNDGEEGLLTIGLGHGNLKAH 668

Query: 701 RTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVE 737
            TGFKPYKRCS+EAKE+R+  TG Q EEK PKR+R+E
Sbjct: 669 LTGFKPYKRCSLEAKESRMGTTGGQGEEKGPKRLRLE 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520209|ref|XP_003528756.1| PREDICTED: protein LHY [Glycine max]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/722 (60%), Positives = 513/722 (71%), Gaps = 21/722 (2%)

Query: 23  WFRAE-HIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYP 81
           W R E HIGTK AVQIRSHAQKFF+KLEKEAL KGVPIG+A+DIDIPPPRPKRKP NPYP
Sbjct: 46  WQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGKALDIDIPPPRPKRKPNNPYP 105

Query: 82  RKTCTNAPMSQIGAKDGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNC 141
           RKT   +     GAKDGKL + V S   NQ L+LEKEP+ ++ + DE  T   E++ +N 
Sbjct: 106 RKTRIGSASLHSGAKDGKL-NLVESSHVNQALNLEKEPLPEKHDLDEGITTVKENKDENR 164

Query: 142 SEVFILHQEAHCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVEL 201
             VF L QE  CSSVSS NK+S+   V L + C  +E  PS+KEV+ +DE  ES+VT+EL
Sbjct: 165 GAVFTLLQEVPCSSVSSANKSSITMSVPLGNPCAFKEITPSVKEVIPRDEKTESFVTIEL 224

Query: 202 KANEKFGKPDAKLALQDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNY 261
           + N      D K   Q NG+SK   LEN+   H K V  EK D +  AL    +Q  QNY
Sbjct: 225 E-NGTLEINDRK---QTNGTSKDSTLENSDALHMKLVQNEKTDGLDCALTIDGMQGNQNY 280

Query: 262 PRHVNVHILDGSLGTGTQSPS-DMPMQESIFHPIGEVHGNPNLFTNPAASATTENESN-V 319
           PRHV VH++DG+LGT TQ+PS DM  ++S+F PIG V+G  N+FTN A S T+E+++N V
Sbjct: 281 PRHVTVHVVDGNLGTNTQNPSQDMLFRDSMFQPIGGVNGQQNVFTNSAPSNTSESQNNTV 340

Query: 320 PKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFW 379
             S HQSF  + PPFTQ  H+QDD +SF H+SS FS+LI+STL+QNPAAHAAASFAATFW
Sbjct: 341 RSSVHQSFLPY-PPFTQ--HNQDDCQSFFHMSSTFSNLIISTLMQNPAAHAAASFAATFW 397

Query: 380 PYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHAP 439
           PY N ETSA+SP C QGGF +RQ+ SPPS+AAIAAATVAAATAWWAAHGLLPLCAP H  
Sbjct: 398 PYANPETSANSPRCSQGGFTNRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTS 457

Query: 440 FICPPACATAVSSMDTAQVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLT 499
           F C PA  TAV SM+T + PA K ++   T  NP L+D   D EYSEA QAQ+SASKS  
Sbjct: 458 FACSPASVTAVPSMNTGEAPALKAEQEKTTLQNPPLQDQMLDPEYSEAQQAQHSASKSPA 517

Query: 500 VLTSDSEESASAKLKMELKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVE 559
            + SDS ES  AKL    KATDHE N    E  DSNKTK RK VDRSSCGS+T SSS+VE
Sbjct: 518 AILSDS-ESGDAKLNTSSKATDHETNKTIPEHLDSNKTKGRKPVDRSSCGSHTASSSDVE 576

Query: 560 TDALEKQEKGKEESKEIDPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREV 619
           TDALEK EKGKEE +  D +  A D  NRR RS SN+TDSWKEVSE GRLAFQALFSREV
Sbjct: 577 TDALEKGEKGKEEPETPDANQLAIDFSNRR-RSVSNLTDSWKEVSEEGRLAFQALFSREV 635

Query: 620 LPQSFSPPHDLKDKMQQDNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGV 679
           LPQSFSPPH LK+K QQ    D  N NK++ D    D +SK    C  + E  +  +  V
Sbjct: 636 LPQSFSPPHALKNKNQQ---MDNANNNKQNIDDKDEDPDSK---KCSSNYEAMQKNLPFV 689

Query: 680 ENNGGEGLLTIGLGHGKLKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGA 739
           ENN  EGLLTIGLG GKLK RRTGFKPYKRCS+EAKENR+  + NQ EE+  KRIR+EG 
Sbjct: 690 ENN--EGLLTIGLGQGKLKTRRTGFKPYKRCSMEAKENRVGASNNQGEEQGCKRIRLEGE 747

Query: 740 TT 741
           T+
Sbjct: 748 TS 749

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
TAIR|locus:2200970	645	LHY "LATE ELONGATED HYPOCOTYL"	0.469	0.539	0.351	4.3e-80
TAIR|locus:2044345	608	CCA1 "circadian clock associat	0.398	0.485	0.322	8.6e-44
TAIR|locus:504955668	336	AT3G10113 [Arabidopsis thalian	0.052	0.116	0.666	2.9e-05
TAIR|locus:2014114	372	EPR1 "EARLY-PHYTOCHROME-RESPON	0.052	0.104	0.666	3.6e-05
TAIR|locus:2169135	287	RVE2 "REVEILLE 2" [Arabidopsis	0.039	0.101	0.666	4.1e-05

TAIR|locus:2200970 LHY "LATE ELONGATED HYPOCOTYL" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 4.3e-80, Sum P(3) = 4.3e-80
 Identities = 139/395 (35%), Positives = 193/395 (48%)

Query:   242 KRDDVADALPTAEVQATQNYPRHVNVHILDGSLGTGTQS-PSDMPMQESIFHPIGE-VHG 299
             K++   D      V + QNYP H +  I++G++    Q+ PS M  Q+ +FHP+ E  HG
Sbjct:   199 KKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHG 258

Query:   300 NPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQFRHDQDDYRSFLHISSAFSSLIV 359
             + NL    A++ TT        ++HQ+FP  H         QDDYRSFL ISS FS+LI+
Sbjct:   259 HANLQATTASATTT--------ASHQAFPACH--------SQDDYRSFLQISSTFSNLIM 302

Query:   360 STLLQNPXXXXXXXXXXTFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMXXXXXXXXXX 419
             STLLQNP          + WPY ++  S DS T P         SSPPS+          
Sbjct:   303 STLLQNPAAHAAATFAASVWPYASVGNSGDSST-PMS-------SSPPSITAIAAATVAA 354

Query:   420 XXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPA-AKTDKNDNTPP----NPA 474
                    HGLLP+CAP  AP  C P    AV +      PA  + D  +NT P    N A
Sbjct:   355 ATAWWASHGLLPVCAP--APITCVPFSTVAVPT------PAMTEMDTVENTQPFEKQNTA 406

Query:   475 LKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHEKNS-EENELHD 533
             L+D Q     S A  + +S    +T L +DS+ +     ++ + A  H+ N+ ++  L D
Sbjct:   407 LQD-QNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVD 465

Query:   534 SNKTKNRKQVDRSSCGSNTPSSSEVETDALXXXXXXXXXXXXIDPSLPATDPGNRRSRSS 593
              +   +      S   + T +  ++E D              I+  L       R + S+
Sbjct:   466 RSSCGSNTP---SGSDAETDALDKMEKDKEDVKETDENQPDVIE--LNNRKIKMRDNNSN 520

Query:   594 SNIT-DSWKEVSEVGRLAFQALFSREVLPQSFSPP 627
             +N T DSWKEVSE GR+AFQALF+RE LPQSFSPP
Sbjct:   521 NNATTDSWKEVSEEGRIAFQALFARERLPQSFSPP 555

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0048574 "long-day photoperiodism, flowering" evidence=IGI;RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IGI;RCA

GO:0009409 "response to cold" evidence=IGI

GO:0042754 "negative regulation of circadian rhythm" evidence=IMP

GO:0009639 "response to red or far red light" evidence=RCA

TAIR|locus:2044345 CCA1 "circadian clock associated 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 8.6e-44, Sum P(3) = 8.6e-44
 Identities = 110/341 (32%), Positives = 156/341 (45%)

Query:   404 SSPPSMXXXXXXXXXXXXXXXXXHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKT 463
             +SPP++                 +GLLPLCAP  +        +T   S D     A+  
Sbjct:   302 NSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKAS-- 359

Query:   464 DKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKMELKATDHE 523
                  T  + +++  +   E+SEA +A++S       L S+  E+ S       K   HE
Sbjct:   360 -----TLQHGSVQSREQ--EHSEASKARSS-------LDSEDVENKS-------KPVCHE 398

Query:   524 KNSE--ENELHDSNKTKNRKQVDRSSCGSNTPSSSE-VETDALXXXXXXXXXX---XXID 577
             + S   E++   S+   +RKQVDRSSCGSNTPSSS+ VE DA                 D
Sbjct:   399 QPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNED 458

Query:   578 PSLPATDPGN-RRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ 636
              + P T   N RRSR SSNITD WK VS+ GR+AFQALFSREVLPQSF+   + +++ QQ
Sbjct:   459 TNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQ 518

Query:   637 DNVEXXXXXXXXXXXXSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK 696
                +               DLN     +    QE +++T  G    G +    +  G   
Sbjct:   519 QQEQRYPMA---------LDLNFTAQLTPVDDQEEKRNT--GFLGIGLDASKLMSRGRTG 567

Query:   697 LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVE 737
              K  +      K   +    N I++     E+K PKR+R+E
Sbjct:   568 FKPYKRCSMEAKESRI-LNNNPIIHV----EQKDPKRMRLE 603

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0048574 "long-day photoperiodism, flowering" evidence=IGI;RCA

GO:0007623 "circadian rhythm" evidence=IEP;IGI;RCA;IMP;TAS

GO:0019904 "protein domain specific binding" evidence=ISS

GO:0043496 "regulation of protein homodimerization activity" evidence=IMP

GO:0009409 "response to cold" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0042754 "negative regulation of circadian rhythm" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:504955668 AT3G10113 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 26/39 (66%), Positives = 30/39 (76%)

Query:    27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDI 65
             EHIGTK AVQIRSHAQKFFSK+ +EA S+     +AI I
Sbjct:    92 EHIGTKTAVQIRSHAQKFFSKMAQEADSRSEGSVKAIVI 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2014114 EPR1 "EARLY-PHYTOCHROME-RESPONSIVE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
 Identities = 26/39 (66%), Positives = 30/39 (76%)

Query:    27 EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDI 65
             EHIGTK AVQIRSHAQKFFSK+ +EA S+     +AI I
Sbjct:   103 EHIGTKTAVQIRSHAQKFFSKMAQEADSRSEGSVKAIVI 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2169135 RVE2 "REVEILLE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query:    23 WFRAE-HIGTKKAVQIRSHAQKFFSKLEKE 51
             W R E H+GTK AVQIRSHAQKFF+K+ ++
Sbjct:    58 WRRIEEHVGTKTAVQIRSHAQKFFTKVARD 87

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007623 "circadian rhythm" evidence=IEP;RCA

GO:0009845 "seed germination" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	741
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.46
KOG0724	335	consensus Zuotin and related molecular chaperones	98.92
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.77
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.05
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.23
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.57
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.15
PLN03162	526	golden-2 like transcription factor; Provisional	95.53
KOG1279	506	consensus Chromatin remodeling factor subunit and	94.36
PLN03212	249	Transcription repressor MYB5; Provisional	93.26
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.25
PLN03091	459	hypothetical protein; Provisional	91.65
KOG4329	445	consensus DNA-binding protein [General function pr	90.09
KOG0724	335	consensus Zuotin and related molecular chaperones	89.28
smart00426	68	TEA TEA domain.	87.19
PLN03212	249	Transcription repressor MYB5; Provisional	86.31
PLN03091	459	hypothetical protein; Provisional	85.19
KOG3841	455	consensus TEF-1 and related transcription factor,	82.87

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.46  E-value=2.6e-14  Score=117.09  Aligned_cols=47  Identities=23%  Similarity=0.101  Sum_probs=43.0

Q ss_pred             cchhhhHHHHHHHHHHhcCc-CC---cee-Ee-eccc-chHHHHHHHHHHHHHH
Q 004618            2 LLFSIFDLIGDLSRLFFLCF-TW---FRA-EH-IGTK-KAVQIRSHAQKFFSKL   48 (741)
Q Consensus         2 ~l~s~~eh~~FLeaL~lyGR-dW---kkI-e~-VgTR-T~~QIRSHAQKYF~Kl   48 (741)
                      +.|+.|||.+||+||+.||+ +|   ++| ++ +.|+ |..||+|||||||+|+
T Consensus         4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            57999999999999999999 99   999 65 4588 9999999999999873

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.8e-10  Score=118.82  Aligned_cols=79  Identities=24%  Similarity=0.055  Sum_probs=72.5

Q ss_pred             chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHHHHhhhcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYP   81 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~~~G~~~~~~~~i~iPPpRpKRkp~hpYP   81 (741)
                      .|..++|.+|+++|.+|++.|.+| +|+|.++.+|||+|+|+||-++.+..      .+.+..|.||+||++||+.||||
T Consensus        55 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~k~~~~y~  128 (335)
T KOG0724|consen   55 RRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD------TSLAEVEEFYNFWPKFKSWRQYP  128 (335)
T ss_pred             ccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc------cccccccccCCccccccccccCC
Confidence            388999999999999999999999 99999999999999999999998875      45567889999999999999999


Q ss_pred             CCCCCC
Q 004618           82 RKTCTN   87 (741)
Q Consensus        82 rK~~~~   87 (741)
                      ++...+
T Consensus       129 ~~~~~~  134 (335)
T KOG0724|consen  129 QKDEPD  134 (335)
T ss_pred             CCCCcc
Confidence            998654

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.77  E-value=2.7e-09  Score=82.75  Aligned_cols=42  Identities=17%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             chhhhHHHHHHHHHHhcCcC-Ccee-Eeec-ccchHHHHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCFT-WFRA-EHIG-TKKAVQIRSHAQKF   44 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRd-WkkI-e~Vg-TRT~~QIRSHAQKY   44 (741)
                      -|+.+|+.+|++|+++||.+ |++| .+|+ +||..|+++|.++|
T Consensus         3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            49999999999999999998 9999 9999 99999999999987

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.22  E-value=6.2e-07  Score=65.28  Aligned_cols=42  Identities=10%  Similarity=0.045  Sum_probs=39.8

Q ss_pred             hhhhHHHHHHHHHHhcC-cCCcee-EeecccchHHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLC-FTWFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyG-RdWkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      |+.+|+..|+.++..|| .+|..| .++++||..||+.|.++++
T Consensus         2 Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            99999999999999999 899999 9999999999999988764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.05  E-value=1.8e-06  Score=63.57  Aligned_cols=43  Identities=9%  Similarity=0.010  Sum_probs=40.3

Q ss_pred             chhhhHHHHHHHHHHhcC-cCCcee-EeecccchHHHHHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLC-FTWFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyG-RdWkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      .|+.+|...|+.++..|| .+|..| .++++||..||+.+...++
T Consensus         3 ~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        3 EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            599999999999999999 899999 9999999999999887765

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.23  E-value=0.00011  Score=58.79  Aligned_cols=41  Identities=17%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKF   44 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKY   44 (741)
                      |+.+|-.+.+++++.||.+|++| +++|+||..||+.+-.++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH
Confidence            88999999999999999999999 999999999999887763

...

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.57  E-value=0.0011  Score=73.24  Aligned_cols=44  Identities=27%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             hhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSK   47 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~K   47 (741)
                      |.-+|.+++|+|+..||- +|..| .||||||..++..|=-|+|..
T Consensus        75 WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   75 WTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            999999999999999999 89999 999999999999999999874

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.15  E-value=0.0019  Score=72.02  Aligned_cols=38  Identities=26%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSH   40 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSH   40 (741)
                      -||-.|....|||+++||-||.+| .||||||+-|---|
T Consensus       281 ~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~  319 (531)
T COG5259         281 NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILH  319 (531)
T ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHH
Confidence            499999999999999999999999 99999999998766

>PLN03162 golden-2 like transcription factor; Provisional

Probab=95.53  E-value=0.016  Score=63.77  Aligned_cols=80  Identities=20%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             cchhhhHHHHHHHHHHhcCc---CCcee-Ee--ecccchHHHHHHHHHHHHHHHHhhhcC---CCCCCccccCCCCCCCC
Q 004618            2 LLFSIFDLIGDLSRLFFLCF---TWFRA-EH--IGTKKAVQIRSHAQKFFSKLEKEALSK---GVPIGQAIDIDIPPPRP   72 (741)
Q Consensus         2 ~l~s~~eh~~FLeaL~lyGR---dWkkI-e~--VgTRT~~QIRSHAQKYF~Kl~r~~~~~---G~~~~~~~~i~iPPpRp   72 (741)
                      |.|+.|=|.+|++|+...|-   .=|+| ++  |.-=|..+|.||-|||.+.+.+.....   +...........|-+|-
T Consensus       238 LrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~~~~P~~rs  317 (526)
T PLN03162        238 VDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYTQAPWPRS  317 (526)
T ss_pred             ccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhhccCCcccC
Confidence            68999999999999999993   35677 55  556689999999999999887544332   22222223344455666


Q ss_pred             CCCCCCCCC
Q 004618           73 KRKPRNPYP   81 (741)
Q Consensus        73 KRkp~hpYP   81 (741)
                      +|+..||+=
T Consensus       318 ~~~~g~p~~  326 (526)
T PLN03162        318 SRRDGLPYL  326 (526)
T ss_pred             CCCCCCccc
Confidence            777666653

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=94.36  E-value=0.021  Score=64.63  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=39.1

Q ss_pred             chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEK   50 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r   50 (741)
                      -|+-.|-.+-|||+++||-+|.+| .||||||.-|--.|    |++|-.
T Consensus       255 ~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k----FL~LPi  299 (506)
T KOG1279|consen  255 NWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK----FLRLPI  299 (506)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH----HHhcCc
Confidence            399999999999999999999999 99999999998887    555443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=93.26  E-value=0.15  Score=53.60  Aligned_cols=43  Identities=12%  Similarity=-0.020  Sum_probs=37.7

Q ss_pred             hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFS   46 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~   46 (741)
                      |+.||-..-|+....||..|.+| .++..||..||+-+=..+..
T Consensus        81 WT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr  124 (249)
T PLN03212         81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR  124 (249)
T ss_pred             CChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999 99999999999876443333

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.25  E-value=0.089  Score=57.27  Aligned_cols=44  Identities=20%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSK   47 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~K   47 (741)
                      |..+|...|+++++..|= +|..| .|||+|+-.-|++|--|||..
T Consensus        66 WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e  111 (432)
T COG5114          66 WGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE  111 (432)
T ss_pred             cCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence            889999999999999998 89999 999999999999999999873

>PLN03091 hypothetical protein; Provisional

Probab=91.65  E-value=0.34  Score=54.59  Aligned_cols=45  Identities=13%  Similarity=0.074  Sum_probs=39.4

Q ss_pred             hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHH
Q 004618            4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKL   48 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl   48 (741)
                      |+.||-.+.|+..+.||..|.+| .++.-||..||+-+=.....|.
T Consensus        70 WT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         70 FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             CCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 9999999999987655444443

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=90.09  E-value=0.14  Score=56.46  Aligned_cols=38  Identities=8%  Similarity=-0.067  Sum_probs=34.9

Q ss_pred             CcchhhhHHHHHHHHHHhcCcCCcee--EeecccchHHHH
Q 004618            1 MLLFSIFDLIGDLSRLFFLCFTWFRA--EHIGTKKAVQIR   38 (741)
Q Consensus         1 ~~l~s~~eh~~FLeaL~lyGRdWkkI--e~VgTRT~~QIR   38 (741)
                      |+-|+-+|-..|-+||++||+|+-.|  --|.||++.-..
T Consensus       277 l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElV  316 (445)
T KOG4329|consen  277 LSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELV  316 (445)
T ss_pred             cccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHH
Confidence            57899999999999999999999999  669999988765

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=89.28  E-value=0.27  Score=51.67  Aligned_cols=49  Identities=18%  Similarity=0.051  Sum_probs=44.1

Q ss_pred             chhhhHHHHHHHHHHhcCc-CCcee--EeecccchHHHHHHHH-----HHHHHHHHh
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA--EHIGTKKAVQIRSHAQ-----KFFSKLEKE   51 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI--e~VgTRT~~QIRSHAQ-----KYF~Kl~r~   51 (741)
                      .|-..+|..|+.++..||+ +|..|  ..+.+|+..|+-+|||     +||.+....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~  222 (335)
T KOG0724|consen  166 PVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSG  222 (335)
T ss_pred             hhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhh
Confidence            5778899999999999999 89999  8899999999999999     888887433

>smart00426 TEA TEA domain

Probab=87.19  E-value=0.5  Score=41.46  Aligned_cols=40  Identities=20%  Similarity=-0.019  Sum_probs=31.8

Q ss_pred             chhhhHHHHHHHHHHhcCc-CCcee--E--------------ee-----cccchHHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA--E--------------HI-----GTKKAVQIRSHAQ   42 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI--e--------------~V-----gTRT~~QIRSHAQ   42 (741)
                      +|+.+=...|++||++|-. .+++|  .              ||     ..||..||-||-|
T Consensus         5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ   66 (68)
T smart00426        5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ   66 (68)
T ss_pred             cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence            6999999999999999987 45543  1              12     3699999999987

>PLN03212 Transcription repressor MYB5; Provisional

Probab=86.31  E-value=0.42  Score=50.36  Aligned_cols=43  Identities=9%  Similarity=-0.015  Sum_probs=37.1

Q ss_pred             chhhhHHHHHHHHHHhcCc-CCcee-Eeec-ccchHHHHHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIG-TKKAVQIRSHAQKFF   45 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~Vg-TRT~~QIRSHAQKYF   45 (741)
                      .|+.||=.+-+++++.||. +|+.| .++| .||..|.|-.=..|+
T Consensus        27 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L   72 (249)
T PLN03212         27 PWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL   72 (249)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence            5999999999999999996 89999 8886 899999997644443

>PLN03091 hypothetical protein; Provisional

Probab=85.19  E-value=0.44  Score=53.74  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=35.4

Q ss_pred             chhhhHHHHHHHHHHhcCc-CCcee-Eeec-ccchHHHHHHH
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIG-TKKAVQIRSHA   41 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~Vg-TRT~~QIRSHA   41 (741)
                      .|+.||-.+.+++++.||. +|++| .++| .||..|.|-.=
T Consensus        16 ~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW   57 (459)
T PLN03091         16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW   57 (459)
T ss_pred             CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH
Confidence            6999999999999999997 89999 8887 89999998653

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=82.87  E-value=1.8  Score=48.37  Aligned_cols=51  Identities=20%  Similarity=0.009  Sum_probs=39.3

Q ss_pred             chhhhHHHHHHHHHHhcCc-CCcee----Ee------------e-----cccchHHHHHHHHHHHHHHHHhhh
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA----EH------------I-----GTKKAVQIRSHAQKFFSKLEKEAL   53 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI----e~------------V-----gTRT~~QIRSHAQKYF~Kl~r~~~   53 (741)
                      .||++=..-|+|||.+|.. .=+||    +.            |     .|||-.||-||-|=.=+|..|+-.
T Consensus        78 vWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq  150 (455)
T KOG3841|consen   78 VWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQ  150 (455)
T ss_pred             ccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999855 33343    22            1     399999999999987777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	741
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-09
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 5e-09
 Identities = 72/504 (14%), Positives = 135/504 (26%), Gaps = 143/504 (28%)

Query: 104 VSSLRCNQVLDLEK--------EPICDRPNGDEKPTY----TIESQKDNCSEVFILHQEA 151
           V +  C  V D+ K        + I    +     T     T+ S+++   + F+     
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQEEMVQKFV----- 83

Query: 152 HCSSVSSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGK-- 209
               V  +N   + +P  ++         PS+                    N+ F K  
Sbjct: 84  --EEVLRINYKFLMSP--IKTEQR----QPSMMT-----RMYIEQRDRLYNDNQVFAKYN 130

Query: 210 ---PDAKLALQDNGSSKPLNLENACPSHEKSVHGE----KRDDVADALPTAEVQATQNYP 262
                  L L+         L    P+    + G     K     D   + +VQ   ++ 
Sbjct: 131 VSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF- 182

Query: 263 RHVNVHILDGSLGTGTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKS 322
               +  L  +L       + + M + + + I     +PN  +        ++ SN+   
Sbjct: 183 ---KIFWL--NLKNCNSPETVLEMLQKLLYQI-----DPNWTSRS------DHSSNIKLR 226

Query: 323 THQSFPTFHPPFTQFRHDQ-----DDYRSFLHISSAFS----------------SLIVST 361
            H              ++       + ++     +AF+                 L  +T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 362 LLQNPAAHAAASFAAT-----FWPYTNMETSADSPTCPQGGFLSRQMS--SPPSMAAIAA 414
                  H + +            Y +               L R++   +P  ++ IA 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----------LPREVLTTNPRRLSIIAE 335

Query: 415 ATVAAATAW--WAAHGLLPLCAPFHAPFICPPACATAVSSMDTAQVPAAKTDK------- 465
           +       W  W       L               T + S      PA            
Sbjct: 336 SIRDGLATWDNWKHVNCDKL--------------TTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 466 NDNTP-PNPALKDHQPDLEYSEALQ-AQNSASKSLTVLTSDSEESASA--KLKMELKATD 521
             +   P   L     D+  S+ +         SL  +    +ES  +   + +ELK   
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKV-- 437

Query: 522 HEKNSEENELHDSNKTKNRKQVDR 545
             K   E  LH       R  VD 
Sbjct: 438 --KLENEYALH-------RSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 40/227 (17%), Positives = 64/227 (28%), Gaps = 68/227 (29%)

Query: 98  GKLRSSVSSLRCNQVLDLEKEP-ICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSV 156
               S  + L   Q L  + +P    R +        I S +     +       +C  V
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 157 SSVNKNSMPTPVGLRDSCN---LREFVPSLKEVVNQDETRESYVTVELKANEK------- 206
                        L +  N      F  S K ++    TR   VT  L A          
Sbjct: 250 -------------LLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATTTHISLDH 293

Query: 207 ----FGKPDAKLALQDNGSSKPLNLENAC-PSHEKSVH-------GEK-RDDVADALPTA 253
                   + K  L      K L+      P    + +        E  RD +       
Sbjct: 294 HSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------- 341

Query: 254 EVQATQNYPRHVNV----HILDGSLGTGTQSPSDMPMQE-----SIF 291
              AT +  +HVN      I++ SL      P++   ++     S+F
Sbjct: 342 ---ATWDNWKHVNCDKLTTIIESSL--NVLEPAE--YRKMFDRLSVF 381

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 52.1 bits (125), Expect = 6e-09
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 26 AEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVP 58
          ++ IG++  +Q++S+A+++F    K  L K  P
Sbjct: 35 SKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 26 AEHIGTKKAVQIRSHAQKFFSKLEKEALSKGVP 58
          A+ +G + A Q+ S  QK+F KL K  +    P
Sbjct: 40 ADELGNRTAKQVASQVQKYFIKLTKAGIPVSGP 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	741
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.07
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.56
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.15
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.9
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	97.89
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.74
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.43
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	96.72
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	96.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.98
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.42
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.17
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	94.16
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.93
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	92.47
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	91.68
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	84.44
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	82.28

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=2.3e-11  Score=90.97  Aligned_cols=50  Identities=20%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC---CEE-EE--ECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6300667999999987429687---605-84--01354679997799999999995
Q 004618            2 LLFSIFDLIGDLSRLFFLCFTW---FRA-EH--IGTKKAVQIRSHAQKFFSKLEKE   51 (741)
Q Consensus         2 ~l~s~~eh~~FLeaL~lyGRdW---kkI-e~--VgTRT~~QIRSHAQKYF~Kl~r~   51 (741)
                      +.|+.++|.+|++||..||++|   ++| ++  |.++|..||+||+||||+++.+.
T Consensus         8 ~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           8 VLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             98999999999999999585435367899870888887999998999999999804

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-08  Score=73.28  Aligned_cols=51  Identities=22%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             300667999999987429687605-840135467999779999999999552
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEAL   53 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~   53 (741)
                      -|+.+|+..|++++..||++|.+| .+|++||..||++|.++||.+..+.+.
T Consensus         4 ~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~   55 (65)
T d2cu7a1           4 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   55 (65)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             9799999999999998652499999892999999999999999779975699

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.6e-07  Score=64.09  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCEE-EEECCCCHHHHHHHHHHHH
Q ss_conf             006679999999874296-87605-8401354679997799999
Q 004618            4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      |+.+|+.++|++++.||. +|++| .+|++||+.|+|.|-++||
T Consensus         4 Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           4 WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             89999999999999988760999997869997799999999769

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.8e-06  Score=58.64  Aligned_cols=40  Identities=5%  Similarity=-0.169  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHH
Q ss_conf             6300667999999987429687605-840135467999779
Q 004618            2 LLFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHA   41 (741)
Q Consensus         2 ~l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHA   41 (741)
                      -.|+.+|..+|++|+..||++|.+| .+|++||..||+.|-
T Consensus        18 ~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~y   58 (68)
T d1xc5a1          18 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY   58 (68)
T ss_dssp             TCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf             89999999999999999887699999876997999999999

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.7e-07  Score=61.03  Aligned_cols=47  Identities=11%  Similarity=0.157  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             300667999999987429687605-84013546799977999999999
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLE   49 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~   49 (741)
                      -|+-+|..+|+++|..||++|..| .+|++||+.||+.|-.+|..++.
T Consensus         7 ~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~~~   54 (65)
T d2iw5b1           7 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN   54 (65)
T ss_dssp             SCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             989999999999999939609999978499999999999999996617

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=4.8e-06  Score=55.73  Aligned_cols=41  Identities=12%  Similarity=-0.167  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCEE-E-EECCCCHHHHHHHH
Q ss_conf             96300667999999987429687605-8-40135467999779
Q 004618            1 MLLFSIFDLIGDLSRLFFLCFTWFRA-E-HIGTKKAVQIRSHA   41 (741)
Q Consensus         1 ~~l~s~~eh~~FLeaL~lyGRdWkkI-e-~VgTRT~~QIRSHA   41 (741)
                      |--|+.+|+..|++||..||++|.+| . +|++||+.||..|-
T Consensus         1 ~d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fY   43 (57)
T d2crga1           1 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY   43 (57)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9989999999999999997625999999994999899999999

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.43  E-value=5.3e-05  Score=48.82  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCC----CCEE-EEECCCCHHHHHHHHHHH
Q ss_conf             30066799999998742968----7605-840135467999779999
Q 004618            3 LFSIFDLIGDLSRLFFLCFT----WFRA-EHIGTKKAVQIRSHAQKF   44 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRd----WkkI-e~VgTRT~~QIRSHAQKY   44 (741)
                      -|+.+|..+|+++++.||.+    |.+| .+|++||+.|++.|-++.
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             98999999999999997778834999999895999999999999999

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00032  Score=43.63  Aligned_cols=43  Identities=12%  Similarity=-0.046  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHHHHCCC-CCCEE-EEECCCCHHHHHHHHHHHH
Q ss_conf             3006679999999874296-87605-8401354679997799999
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      -|+.+|..+.++++..||- +|.+| .++++||..|+|.+-++|.
T Consensus         3 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           3 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             989999999999999978899999998877998899999998427

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00038  Score=43.11  Aligned_cols=41  Identities=7%  Similarity=-0.131  Sum_probs=37.4

Q ss_pred             CHHHHHHHHHHHHHHHCCCC----CCEE-EEECCCCHHHHHHHHHH
Q ss_conf             30066799999998742968----7605-84013546799977999
Q 004618            3 LFSIFDLIGDLSRLFFLCFT----WFRA-EHIGTKKAVQIRSHAQK   43 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRd----WkkI-e~VgTRT~~QIRSHAQK   43 (741)
                      -|+.+|..+|++++..||.+    |.+| ++|++||..|++-|-+.
T Consensus        14 ~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          14 PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             9699999999999998088664599999988499999999999987

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0015  Score=39.27  Aligned_cols=42  Identities=10%  Similarity=-0.046  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHH
Q ss_conf             300667999999987429687605-840135467999779999
Q 004618            3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKF   44 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKY   44 (741)
                      -|+.+|-..+++.++.||..|..| .+++.||..||+.+-..+
T Consensus         3 ~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             9999999999999999863899999686999999999999987

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0022  Score=38.12  Aligned_cols=43  Identities=9%  Similarity=0.021  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHHHHHCCC-CCCEE-EEECCCCHHHHHHHHHHHH
Q ss_conf             3006679999999874296-87605-8401354679997799999
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      -|+.+|-.+.+++++.||- .|..| .++++||..|+|.+=++|+
T Consensus         5 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           5 PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             989999999999999978897999999977998899999999657

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.01  Score=33.63  Aligned_cols=42  Identities=12%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCC----CCEE-EEECCCCHHHHHHHHHHHH
Q ss_conf             30066799999998742968----7605-8401354679997799999
Q 004618            3 LFSIFDLIGDLSRLFFLCFT----WFRA-EHIGTKKAVQIRSHAQKFF   45 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRd----WkkI-e~VgTRT~~QIRSHAQKYF   45 (741)
                      -|+.+|-..|-.||..|..+    |.+| ++|| ||+-||..++++..
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg-kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf             899999999999998879997179999999989-79999999999999

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.01  Score=33.72  Aligned_cols=40  Identities=10%  Similarity=0.053  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHHHHCCC-CCCEE-EE--ECCCCHHHHHHHHH
Q ss_conf             3006679999999874296-87605-84--01354679997799
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EH--IGTKKAVQIRSHAQ   42 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~--VgTRT~~QIRSHAQ   42 (741)
                      -|+.+|....+++++.||. .|..| .+  ..+||..|++-.-.
T Consensus         4 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwr   47 (55)
T d1w0ua_           4 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR   47 (55)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             98999999999999981897199988666898969999999999

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.93  E-value=0.031  Score=30.50  Aligned_cols=45  Identities=7%  Similarity=-0.049  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf             006679999999874296-87605-8401354679997799999999
Q 004618            4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSKL   48 (741)
Q Consensus         4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~Kl   48 (741)
                      |+--|-..|+.|+.+||| |-..| ..|.+||.-.|+.-|.-|+.+.
T Consensus         2 WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry   48 (52)
T d1ofcx1           2 WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC   48 (52)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             87999999999999988755999999866999999999999999987

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.027  Score=30.86  Aligned_cols=41  Identities=10%  Similarity=0.050  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHHHHHHHCCC-CCCEE-EE--ECCCCHHHHHHHHHH
Q ss_conf             3006679999999874296-87605-84--013546799977999
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EH--IGTKKAVQIRSHAQK   43 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~--VgTRT~~QIRSHAQK   43 (741)
                      -|+.+|....+++++.||. .|..| ..  .+.||..|++-.-..
T Consensus         4 ~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~n   48 (52)
T d1w0ta_           4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT   48 (52)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             989999999999999978998999874657899799999999999

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.68  E-value=0.022  Score=31.39  Aligned_cols=45  Identities=13%  Similarity=-0.052  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCC------CCEE-EEECCCCHHHHHHHHHHHHHH
Q ss_conf             30066799999998742968------7605-840135467999779999999
Q 004618            3 LFSIFDLIGDLSRLFFLCFT------WFRA-EHIGTKKAVQIRSHAQKFFSK   47 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGRd------WkkI-e~VgTRT~~QIRSHAQKYF~K   47 (741)
                      -|+.+|-...++.+++||..      |.+| .+++.||..|+|.+=..|...
T Consensus         3 ~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p   54 (86)
T d1igna1           3 SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   54 (86)
T ss_dssp             CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             9899999999999999686767746899999786898788999999987083

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.44  E-value=0.15  Score=25.95  Aligned_cols=46  Identities=13%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHHHCCC-CCCEE-EE----ECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3006679999999874296-87605-84----01354679997799999999995
Q 004618            3 LFSIFDLIGDLSRLFFLCF-TWFRA-EH----IGTKKAVQIRSHAQKFFSKLEKE   51 (741)
Q Consensus         3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~----VgTRT~~QIRSHAQKYF~Kl~r~   51 (741)
                      -|+.+|-...++|++.||- .|..| ..    +..||..|++-   +|..-|...
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~---RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH---HHHHHHHHH
T ss_conf             9899999999999999786559999999875426999899999---999985131

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.28  E-value=0.67  Score=21.61  Aligned_cols=51  Identities=14%  Similarity=0.018  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC---CCEE-EEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             630066799999998742968---7605-840135467999779999999999552
Q 004618            2 LLFSIFDLIGDLSRLFFLCFT---WFRA-EHIGTKKAVQIRSHAQKFFSKLEKEAL   53 (741)
Q Consensus         2 ~l~s~~eh~~FLeaL~lyGRd---WkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~   53 (741)
                      .+|..+|-...|+..+.+|-.   |.+| ..++-||..|||--=| ++.+|.....
T Consensus        34 ~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~-~Lm~lf~~~~   88 (95)
T d1ug2a_          34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFR-ELMQLFHTAC   88 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHH-HHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHH
T ss_conf             775788889999999983994879999999858999999999999-9999999743