Citrus Sinensis ID: 004730

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730---

MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGKYYFLKSLFYQY

ccEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEcEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEcccHHHHHccccccccccccEEEEEcccHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccccEEcccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccHHHccccHHHHHHHHccccccccccccccccccccEEHHHHHHccc

cccEEcccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccccccccccccHHHcccccccccEEEEEEEEEEccHHHHHHHHccHHHHccccEEEEEcccHHHHHHHHccccccEEEEccccccccccccHHHHHHHHcccEEEEEEcHccccHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHcccHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHcccccccccccccccccHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHcccccccccccccccccHccccEEccccccccccEEEcccccccccccEEEEccccccccccccccccEEEccccEEccccccccEcccccccccccccccccHHHHHHHccccccccEccccEEcccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHccccccEcEEEEEccccccEEEccccEEEccccccccEEcccccccEEcccEccccccccHHcccccccccHHHHHHHHHHHHHcccccccccccEEccccEEEccccccEEEcccccccEccccHcHHHcccccccccccccccEcEccccEEEEHHHHHccc

mgffdlnipyvesppsnatthknARVKIVIKAMELGYTgvaynrtmkgvmsdrdrcsipLLTLAALLKLApslsasvnfhrdllgvprcspfrqytrltVFADTIAQCqvlnsgnpvlktydlvavrplnqsafDHACEKAEVDIISINfaeklpfrlklPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRgknlilssgassvtelrgpydvanlSSLLGISMERAKAAVSKNCRALISNALRKKHFhretirvepissgeqfdskepwsgdwlkwdpissgegdlqldDMAESFtastkvsktvktINFASvidsipshsfrvndliygtqavshsrdsgksnlfvaganeksvasngvsenrrrldilhetdqnslhnaplnnqssscennresgspsafpetiintediesqptiieeddvaeksftaketerddqntkhgissHAVDLVLSKEivkcpaltgeielgaacnvdnklegdtlpdtfhssachneesktaessgvdfdsqnvamgevgmkidikdredasvaldnvsltdnvierEHFRELVDvvsgqnllqgshdemdnkngtsfanheTEVTMEELrdgerlrepgdgrllaDKISIQESCTEMIvkddssvanhEACEEVMVEKQkngvqfrepgerlitgqnlfldsskdfsvkenssdanqeglddakmeeqihgeadsetdrptlvpcvsgkyYFLKSLFYQY

mgffdlnipyvesppsnatthknARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILssgassvtelrgPYDVANLSSLLGISMERAKAAVSKNCRALISNalrkkhfhretirvepissgeqfdskEPWSGDWLKWDPISSGEGDLQLDDMAESFTastkvsktvktinfasvidsipshsFRVNDLIYGTQAVSHSRDSGKSNLFVAganeksvasngvsenrRRLDILhetdqnslhnaplnnqsssCENNRESGSPSAFPETIintediesqptiieeddvAEKSFTAketerddqntkhgisshavdlvLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNeesktaessgvdfdSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLqgshdemdnkngtsfanhetevtmeelrdgerlrepgdgrllaDKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSsdanqeglddAKMEEQIhgeadsetdrptlvpcvSGKYYFLKSLFYQY

MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCsiplltlaallklapslsasVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTAstkvsktvktINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGKYYFLKSLFYQY

*****LNIPY************NARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV**************WSGDWLKWDPI*******************TKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQA******************************************************************************************************************HAVDLVLSKEIVKCPALTGEIELGAACNVDNKL*****************************************KIDI*****ASVALDNVSLTDNVIEREHFRELVDVVSG*******************************************************C**MI**********************************************************************************TLVPCVSGKYYFLKSLFY**

MGFFDLNIPYVESP*********ARVKIVIKAMELGYTGVAYNRTMKGVM**************************************CSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIR***********************************************************************************************************************TDQNSL*NA************************************IIEEDDV******************************SKEIVKCPALTGEIELGAACNVDNKLE******************************************************DNVSLT**VI*******************************SFANHE**************************************************************************************************************************PCVSGKYYFLKSLFYQY

MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLN****************AFPETIINTEDIESQPTIIEEDDVAEKSF**************GISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACH***********VDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDF***********EGLDDAKMEEQ*********DRPTLVPCVSGKYYFLKSLFYQY

*GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDR***SIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPIS***********SGDWL**D**********L*********S******VKTINFASVIDSIPSHSFRVNDLIYGTQ********************************RRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLRE*GD*RL******I*ESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSS**NQEGLDDAK**E************PTLVPCVSGKYYFLKSLFYQY

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		733	2.2.26 [Sep-21-2011]
Q3SZ21		268	Ribonuclease P protein su	yes	no	0.230	0.630	0.476	8e-35
O88796		268	Ribonuclease P protein su	yes	no	0.230	0.630	0.464	3e-34
P78346		268	Ribonuclease P protein su	yes	no	0.230	0.630	0.464	1e-33
Q3ZE13		366	Ribonuclease P protein su	yes	no	0.308	0.617	0.309	4e-28
P87120		235	Probable ribonuclease P p	yes	no	0.313	0.978	0.282	1e-23
P38786		293	Ribonuclease P/MRP protei	yes	no	0.332	0.832	0.242	5e-15

>sp\|Q3SZ21\|RPP30_BOVIN Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	Back alignment and function desciption

 Score =  149 bits (376), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 102/170 (60%), Gaps = 1/170 (0%)

Query: 91  PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
           P +  TRLT+     + C VL + +  ++ YD+VAV P  +  F  AC   +VD++ I  
Sbjct: 70  PIKILTRLTIIVSDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129

Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
            EKLPF  K P I  AI+RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS
Sbjct: 130 TEKLPFYFKRPPINVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISS 189

Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 259
            A    E+RGPYDVANL  L G+S   AKAAVS NCRA L+    RK  F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAF 239

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp\|O88796\|RPP30_MOUSE Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=2 SV=1	Back alignment and function description

>sp\|P78346\|RPP30_HUMAN Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1 SV=1	Back alignment and function description

>sp\|Q3ZE13\|RPP30_DICDI Ribonuclease P protein subunit drpp30 OS=Dictyostelium discoideum GN=drpp30 PE=2 SV=1	Back alignment and function description

>sp\|P87120\|RNP3_SCHPO Probable ribonuclease P protein subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A12.04c PE=3 SV=2	Back alignment and function description

>sp\|P38786\|RPP1_YEAST Ribonuclease P/MRP protein subunit RPP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		733
297746159		667	unnamed protein product [Vitis vinifera]	0.803	0.883	0.548	1e-162
359478668		694	PREDICTED: uncharacterized protein LOC10	0.803	0.848	0.548	1e-162
255584138		666	protein with unknown function [Ricinus c	0.818	0.900	0.462	1e-144
297793553		680	hypothetical protein ARALYDRAFT_332265 [	0.474	0.511	0.628	1e-136
9757919		680	unnamed protein product [Arabidopsis tha	0.525	0.566	0.580	1e-135
238481602		705	ribonuclease P subunit Rpp30 [Arabidopsi	0.525	0.546	0.580	1e-135
30697320		581	ribonuclease P subunit Rpp30 [Arabidopsi	0.525	0.662	0.580	1e-134
224106561		324	predicted protein [Populus trichocarpa]	0.440	0.996	0.694	1e-133
449461019		605	PREDICTED: uncharacterized protein LOC10	0.789	0.957	0.445	1e-130
449529656		513	PREDICTED: uncharacterized LOC101218953	0.634	0.906	0.534	1e-130

>gi\|297746159\|emb\|CBI16215.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 330/602 (54%), Positives = 425/602 (70%), Gaps = 13/602 (2%)

Query: 1   MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPL 60
           MGFFDLNIPY     + A   K++R+K+V+KAMELGY+GVAYNR +KGVMSD D CSIP 
Sbjct: 1   MGFFDLNIPY---DGTTAAGDKSSRIKVVVKAMELGYSGVAYNRKIKGVMSDSDSCSIPP 57

Query: 61  LTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKT 120
           L+L++LLKLAPSLS+SV FHR LLGVP  SPFRQYTRLTV  D+  Q   LNSGNPVLK+
Sbjct: 58  LSLSSLLKLAPSLSSSVRFHRSLLGVPLSSPFRQYTRLTVAVDSSPQASALNSGNPVLKS 117

Query: 121 YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDL 180
           YDLVAVRPLNQ+AFD AC+ +EVD+I+I+F+EKLPFRLKLPM+KAAI+RGVYFE+TYS+L
Sbjct: 118 YDLVAVRPLNQNAFDQACQVSEVDLIAIDFSEKLPFRLKLPMVKAAIKRGVYFEITYSNL 177

Query: 181 ILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 240
           I DVQ R+Q+ISNAKLLVDWTRG NLI SS A SV ELRGPYDVANLSSLLG+SMERAKA
Sbjct: 178 ISDVQSRKQVISNAKLLVDWTRGNNLIFSSAAPSVNELRGPYDVANLSSLLGLSMERAKA 237

Query: 241 AVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQL 300
           A+SKNCR+LI+NALRKK F++E IRVE I S E FDS EPWSG+ LKWDPISSGEGDL L
Sbjct: 238 AISKNCRSLIANALRKKQFYKEAIRVELIPSSE-FDSNEPWSGNGLKWDPISSGEGDLLL 296

Query: 301 DDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVA 360
           DDMA+SF+A+ KVSKTVK I+FAS++D++P H  ++ DL+ GT++V    D+ K+++ V 
Sbjct: 297 DDMAKSFSAAGKVSKTVKAIDFASIVDNMPPHGLQLKDLLSGTKSVLQPVDNIKNSMSVD 356

Query: 361 GANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIIN 420
           G     V +NG SE    L +  ET+Q S +N P   Q S  E++++S SP+   +  I+
Sbjct: 357 GKIGAPVPTNGGSEQPDMLKLFPETEQTSSYNTPSKCQISGHEDSKKSFSPNDTSKADID 416

Query: 421 TEDIESQPTIIEEDDVAEKS---FTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALT 477
           +E+I++  TI EE+         F+   TE D+  ++   +    ++VL  + +    + 
Sbjct: 417 SEEIKTHTTITEEEPNISNGLVDFSPVRTEIDNLQSEECTAGSEANVVLPDDNLTLCTVL 476

Query: 478 GEIELGAACN--VDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKI 535
            +IE  A CN   D K E  T     + S   NEES+ A+   V   +++V + EV +  
Sbjct: 477 MDIECDAVCNADADGKFEVPTQTRDVNLSVLQNEESRNAKGFDVVLGARSVTVDEVLVDT 536

Query: 536 DIKDREDASVALDNVSLTDNVIEREHFRELVD---VVSGQNLLQGSHDEMDNKNGTSFAN 592
           D+K+    S+A +NV L DN  ERE FRE VD   ++S        +DE+   N +S AN
Sbjct: 537 DMKNEASLSLASNNVLLHDNSSERE-FREPVDDSVLLSDGTPSVECYDELKGSNDSSVAN 595

Query: 593 HE 594
           HE
Sbjct: 596 HE 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359478668\|ref\|XP_002281631.2\| PREDICTED: uncharacterized protein LOC100241609 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255584138\|ref\|XP_002532809.1\| protein with unknown function [Ricinus communis] gi\|223527429\|gb\|EEF29566.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|297793553\|ref\|XP_002864661.1\| hypothetical protein ARALYDRAFT_332265 [Arabidopsis lyrata subsp. lyrata] gi\|297310496\|gb\|EFH40920.1\| hypothetical protein ARALYDRAFT_332265 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|9757919\|dbj\|BAB08366.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|238481602\|ref\|NP_001154789.1\| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gi\|332009879\|gb\|AED97262.1\| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30697320\|ref\|NP_200806.2\| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gi\|332009878\|gb\|AED97261.1\| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224106561\|ref\|XP_002314208.1\| predicted protein [Populus trichocarpa] gi\|222850616\|gb\|EEE88163.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449461019\|ref\|XP_004148241.1\| PREDICTED: uncharacterized protein LOC101218953 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449529656\|ref\|XP_004171814.1\| PREDICTED: uncharacterized LOC101218953 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		733
TAIR\|locus:2168068		705	GAF1 "AT5G59980" [Arabidopsis	0.525	0.546	0.541	8.7e-115
UNIPROTKB\|E1BZ65		267	RPP30 "Uncharacterized protein	0.221	0.606	0.462	8.1e-35
UNIPROTKB\|F1SCX5		268	RPP30 "Uncharacterized protein	0.261	0.716	0.448	2.1e-33
UNIPROTKB\|Q3SZ21		268	RPP30 "Ribonuclease P protein	0.259	0.708	0.445	4.6e-33
UNIPROTKB\|J9NSV8		268	RPP30 "Uncharacterized protein	0.230	0.630	0.470	4.6e-33
UNIPROTKB\|F1MDQ8		268	RPP30 "Ribonuclease P protein	0.259	0.708	0.439	9.7e-33
RGD\|1595116		268	Rpp30 "ribonuclease P/MRP subu	0.255	0.697	0.441	2e-32
MGI\|MGI:1859683		268	Rpp30 "ribonuclease P/MRP 30 s	0.230	0.630	0.464	2.6e-32
UNIPROTKB\|P78346		268	RPP30 "Ribonuclease P protein	0.251	0.686	0.440	4.3e-32
UNIPROTKB\|Q5VU11		254	RPP30 "Ribonuclease P protein	0.218	0.629	0.468	3.2e-31

TAIR\|locus:2168068 GAF1 "AT5G59980" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1095 (390.5 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
 Identities = 213/393 (54%), Positives = 282/393 (71%)

Query:     1 MGFFDLNIPYVESPPSNATT---HKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCX 57
             MGFFDL+IPY E P S        K  R+K+  KAMELGY G+A+NR++KGVMSD+D C 
Sbjct:     1 MGFFDLSIPYNEPPRSGGKEIAGGKTLRLKLATKAMELGYVGIAHNRSIKGVMSDKDSCT 60

Query:    58 XXXXXXXXXXXXXXXXXXXVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPV 117
                                V FHRDLLGVPR +PFRQYTRLTV  ++ AQCQ LNSGNP+
Sbjct:    61 IPLLTLGSLIKVAPRLASSVGFHRDLLGVPRTTPFRQYTRLTVHVESNAQCQSLNSGNPI 120

Query:   118 LKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTY 177
             LK+YD++AVRP+NQ+AFD+ACEKAEVD+ISI+F +K+ FRLK PM+KAAI+RG+YFE+ Y
Sbjct:   121 LKSYDIIAVRPMNQNAFDYACEKAEVDLISIDFTDKMLFRLKHPMVKAAIQRGIYFEIKY 180

Query:   178 SDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMER 237
             SD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP DV NL  LLG+S ER
Sbjct:   181 SDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGPNDVINLMFLLGLSAER 240

Query:   238 AKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGD 297
             A+AA+SKNCR +I+  L+KK FH+E +RVE +S+G+ F  ++P S D +KWD +SSGEGD
Sbjct:   241 ARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPLSEDCMKWDRLSSGEGD 300

Query:   298 LQLDDMAESFTAXXXXXXXXX-XINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSN 356
             + LDD+A++F A           I+F SV+D +P H FRV D++ GT++V+    +   +
Sbjct:   301 MLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV-GTESVTQPSAAKVID 359

Query:   357 LFVAGANEKS---VASNGVSENRRRLDILHETD 386
               V  +N+ S   +A+    +N R ++ + + D
Sbjct:   360 TQVHSSNQVSELRMATASSDDNLREIETISQID 392

GO:0000213 "tRNA-intron endonuclease activity" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008033 "tRNA processing" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

GO:0008295 "spermidine biosynthetic process" evidence=RCA

UNIPROTKB\|E1BZ65 RPP30 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SCX5 RPP30 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SZ21 RPP30 "Ribonuclease P protein subunit p30" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NSV8 RPP30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MDQ8 RPP30 "Ribonuclease P protein subunit p30" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1595116 Rpp30 "ribonuclease P/MRP subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1859683 Rpp30 "ribonuclease P/MRP 30 subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P78346 RPP30 "Ribonuclease P protein subunit p30" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VU11 RPP30 "Ribonuclease P protein subunit p30" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	0.691
3rd Layer	3.1.26.5	0.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024424001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (648 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037142001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (154 aa)	•	•	•	0.890

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		733
pfam01876		152	pfam01876, RNase_P_p30, RNase P subunit p30	7e-51
COG1603		229	COG1603, RPP1, RNase P/RNase MRP subunit p30 [Tran	8e-21
PRK00912		237	PRK00912, PRK00912, ribonuclease P protein compone	2e-06

>gnl\|CDD\|216757 pfam01876, RNase_P_p30, RNase P subunit p30	Back alignment and domain information

 Score =  173 bits (442), Expect = 7e-51
 Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 7/155 (4%)

Query: 95  YTRLT-VFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEK 153
           Y+R+T V +D  +  Q+L+    + + YD+VAVRP ++ A   ACE  +VDIIS++   +
Sbjct: 1   YSRVTIVASDPKSLRQLLS---KLRQKYDIVAVRPGSEKALRAACENLDVDIISLDLTSR 57

Query: 154 LPFRLKLPMIKAAIERGVYFELTYSDLIL-DVQLRRQMISNAKLLVDWTRG--KNLILSS 210
           LPF LK  + K A+ERGV FE++YS L+  D   RR  ISNA+ L+  +R   + +++SS
Sbjct: 58  LPFGLKHKLAKLAVERGVAFEISYSPLLRRDGYARRNFISNARKLIRLSRKYDRPIVISS 117

Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKN 245
           GA S  ELR PYDV NL +LLG+  E AK A+S N
Sbjct: 118 GARSPLELRSPYDVINLLALLGLDEEEAKEALSTN 152

This protein is part of the RNase P complex that is involved in tRNA maturation. Length = 152

>gnl\|CDD\|224519 COG1603, RPP1, RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234862 PRK00912, PRK00912, ribonuclease P protein component 3; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		733
KOG2363		247	consensus Protein subunit of nuclear ribonuclease	100.0
) that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01876">PF01876		150	RNase_P_p30: RNase P subunit p30; InterPro: IPR002	100.0
COG1603		229	RPP1 RNase P/RNase MRP subunit p30 [Translation, r	100.0
PRK00912		237	ribonuclease P protein component 3; Provisional	100.0
PRK03892		216	ribonuclease P protein component 3; Provisional	99.93
PRK06361		212	hypothetical protein; Provisional	98.86
PRK09248		246	putative hydrolase; Validated	98.23
PRK07328		269	histidinol-phosphatase; Provisional	97.24
PRK07945		335	hypothetical protein; Provisional	97.18
COG1387		237	HIS2 Histidinol phosphatase and related hydrolases	97.16
PRK08609		570	hypothetical protein; Provisional	97.09
PRK08392		215	hypothetical protein; Provisional	96.88
PRK08123		270	histidinol-phosphatase; Reviewed	95.13
PRK05588		255	histidinol-phosphatase; Provisional	92.11
TIGR00010		252	hydrolase, TatD family. Several genomes have multi	91.2
PRK07329		246	hypothetical protein; Provisional	88.44
PRK06740		331	histidinol-phosphatase; Validated	87.77
cd01310		251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	86.57
PRK09875		292	putative hydrolase; Provisional	86.05
cd00530		293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	82.48
COG3964		386	Predicted amidohydrolase [General function predict	80.53

>KOG2363 consensus Protein subunit of nuclear ribonuclease P (RNase P) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=3.4e-39  Score=327.05  Aligned_cols=231  Identities=35%  Similarity=0.538  Sum_probs=199.5

Q ss_pred             ceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCccccccccc
Q 004730            2 GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHR   81 (733)
Q Consensus         2 GFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~   81 (733)
                      +|||+||+|+.++.       ..|.+++.++.++||++||||++++....  ..++. |  +++...             
T Consensus         1 m~~D~nv~~~~~~~-------~lr~~sv~~l~~~gyt~iaIn~~~~~~e~--~~~~~-p--i~~~~~-------------   55 (247)
T KOG2363|consen    1 MFIDLNVSSSYDGS-------ALRLASVDTLEELGYTGIAINTVVDPSEN--EVIPN-P--IKEELD-------------   55 (247)
T ss_pred             CeEEeccCCCcchH-------hhhhhhhhHHHhcccceEEEEEEecHhHc--ccccC-c--hHHHHH-------------
Confidence            69999999998742       22336788999999999999999886432  22222 2  222111             


Q ss_pred             ccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHH
Q 004730           82 DLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLP  161 (733)
Q Consensus        82 dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhk  161 (733)
                       .     -..+++|+||||+++++.+.+...   +...+|||+|++|.+++.|..+|..+++|+|++||+.++||.+||+
T Consensus        56 -~-----l~~~kiy~riti~~~~~~~~~~~s---~~~~k~di~a~~p~~~~~~s~~~t~l~~dvitfn~~~~~~~~~k~~  126 (247)
T KOG2363|consen   56 -L-----LRDKKIYSRITILVSDMPATRSTS---KRATKFDILAVRPKNIEGLSGACTMLDPDVITFNYTERLPFLFKRK  126 (247)
T ss_pred             -H-----hhcccceeeEEEEEEcCCccccch---hhccceeeeeecccChhhcccccccCCcceEEEechhccCcccCCc
Confidence             1     123789999999999999886543   4568999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHH
Q 004730          162 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAA  241 (733)
Q Consensus       162 laraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~A  241 (733)
                      .+..|+.||++|||.|++.++++..|++||+||+.|++.++|+|||+||||..++++|+|+||+||+.+|||++++|+++
T Consensus       127 ~~~~av~r~i~~ei~y~~g~~d~~~r~~~isna~~L~~~~~~~nvv~sSgA~~~~e~r~~~dV~~l~~~lgl~~dq~k~~  206 (247)
T KOG2363|consen  127 EIMTAVKRGIFLEIPYSSGLYDSDDRRMWISNARRLLRITRGKNVVFSSGAMRPTEERGPYDVANLLIILGLSSDQAKAA  206 (247)
T ss_pred             ceeeeecCCceeEeeecccccCCcchhhhhhhHHHHHHhcCCceeEeecccccchhhcChhhhhhhHHHcCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHhhhhcccceeeeEEE
Q 004730          242 VSKNCRALISNALRKKHFHRETIRV  266 (733)
Q Consensus       242 LS~nPrsLL~~AlRRKs~~KgvV~V  266 (733)
                      |+.+||.++.++.+|++.++..+..
T Consensus       207 l~~s~r~~~l~a~~R~~~~~s~~~~  231 (247)
T KOG2363|consen  207 LSESCRLLLLCAETRRSKAASISES  231 (247)
T ss_pred             HhhhhhhhhhHHHHhhccceeEeec
Confidence            9999999999998787755555444

>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex (Back alignment and domain information

>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00912 ribonuclease P protein component 3; Provisional	Back alignment and domain information

>PRK03892 ribonuclease P protein component 3; Provisional	Back alignment and domain information

>PRK06361 hypothetical protein; Provisional	Back alignment and domain information

>PRK09248 putative hydrolase; Validated	Back alignment and domain information

>PRK07328 histidinol-phosphatase; Provisional	Back alignment and domain information

>PRK07945 hypothetical protein; Provisional	Back alignment and domain information

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK08609 hypothetical protein; Provisional	Back alignment and domain information

>PRK08392 hypothetical protein; Provisional	Back alignment and domain information

>PRK08123 histidinol-phosphatase; Reviewed	Back alignment and domain information

>PRK05588 histidinol-phosphatase; Provisional	Back alignment and domain information

>TIGR00010 hydrolase, TatD family	Back alignment and domain information

>PRK07329 hypothetical protein; Provisional	Back alignment and domain information

>PRK06740 histidinol-phosphatase; Validated	Back alignment and domain information

>cd01310 TatD_DNAse TatD like proteins; E	Back alignment and domain information

>PRK09875 putative hydrolase; Provisional	Back alignment and domain information

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon	Back alignment and domain information

>COG3964 Predicted amidohydrolase [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		733
1v77_A		212	PH1877P, hypothetical protein PH1877; RNAse P prot	2e-40
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* Length = 212	Back alignment and structure

 Score =  146 bits (370), Expect = 2e-40
 Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 93  RQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAE 152
           ++Y ++ +         V ++         L+ V   +     ++ EK  VD I   +  
Sbjct: 50  KEYGKVAILLSNPKPSLVRDTVQK--FKSYLIYVESNDLRVIRYSIEK-GVDAIISPWVN 106

Query: 153 KLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTR--GKNLILS 209
           +    +   + K  +++ V    +   L+      R  ++                  L+
Sbjct: 107 RKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLT 166

Query: 210 SGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNA 253
           S A    ++R P D+ +L  ++G+ + +AKA++S     ++   
Sbjct: 167 SSAQEKWDVRYPRDLISLGVVIGMEIPQAKASISMYPEIILKRL 210

PyMOL of 1v77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		733
1v77_A		212	PH1877P, hypothetical protein PH1877; RNAse P prot	99.97
1m65_A		245	Hypothetical protein YCDX; structural genomics, be	98.17
2wje_A		247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	97.47
3qy7_A		262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	97.42
2w9m_A		578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	97.09
3b0x_A		575	DNA polymerase beta family (X family); structural	97.02
2yxo_A		267	Histidinol phosphatase; metal-dependent, hydrolase	96.51
2yb1_A		292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	94.43
2anu_A		255	Hypothetical protein TM0559; predicted metal-depen	93.17
2y1h_A		272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	89.9

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*	Back alignment and structure

Probab=99.97  E-value=1.4e-29  Score=247.49  Aligned_cols=200  Identities=16%  Similarity=0.173  Sum_probs=171.4

Q ss_pred             CceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCcccccccc
Q 004730            1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFH   80 (733)
Q Consensus         1 MGFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~   80 (733)
                      |+|||||+|   .            .+++.+|.++ |++|||+...+. ++        .+  ..+..+           
T Consensus         7 M~~~D~hvh---~------------~e~~~~A~~~-~~~i~itdH~~~-~~--------~~--~~~~~l-----------   48 (212)
T 1v77_A            7 VKFIEMDIR---D------------KEAYELAKEW-FDEVVVSIKFNE-EV--------DK--EKLREA-----------   48 (212)
T ss_dssp             CCCEEEEEC---S------------HHHHHHHHHH-CSEEEEEEEESS-CC--------CH--HHHHHH-----------
T ss_pred             eEEEEeCcC---H------------HHHHHHHHHH-hcEEEEeeccCc-cc--------ch--hhHHHH-----------
Confidence            569999999   1            4678899999 999999887443 11        11  111111           


Q ss_pred             cccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCH
Q 004730           81 RDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKL  160 (733)
Q Consensus        81 ~dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKh  160 (733)
                      +        .++++ .|+++.+.++.++..+..  ++ + |||++|+|+|.+.++.||++ .||||++|...|.|+.+++
T Consensus        49 ~--------~~~~I-~GvEi~~~~~~~l~~~~~--~~-r-~di~~v~~~~~~~n~~a~~~-~vDII~Hp~~~~~~~~~~~  114 (212)
T 1v77_A           49 R--------KEYGK-VAILLSNPKPSLVRDTVQ--KF-K-SYLIYVESNDLRVIRYSIEK-GVDAIISPWVNRKDPGIDH  114 (212)
T ss_dssp             H--------HHHSC-EEEEEESCCHHHHHHHHH--HC-S-SSEEEEECSCHHHHHHHHHT-TCSEEECTTTTSSSCSCCH
T ss_pred             H--------hcCCe-eEEEEecCCHHHHHHHHH--hc-C-cEEEEEEeCCHHHHHHHHhC-CCCEEecccccccCCCCCH
Confidence            0        12567 999999999998775432  11 2 99999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHcCeEEEEEecccccC-hHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHH
Q 004730          161 PMIKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMER  237 (733)
Q Consensus       161 klaraAIeRGV~FEI~YSplI~D-s~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseee  237 (733)
                      ..+++|.++||+|||+|+++++. ...|++++.|++.+++++|  |.+|||||+|.+++++|+|+++++|+..+||++++
T Consensus       115 ~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDAh~~~~v~~~~~~~~l~~~~G~~~e~  194 (212)
T 1v77_A          115 VLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVIGMEIPQ  194 (212)
T ss_dssp             HHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhcCCHHHHHHHHHHcCCCHHH
Confidence            99999999999999999998876 6789999999999999998  89999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHh
Q 004730          238 AKAAVSKNCRALISN  252 (733)
Q Consensus       238 AK~ALS~nPrsLL~~  252 (733)
                      ++.+++.+|+.++.+
T Consensus       195 ~~~~l~~~~~~i~~~  209 (212)
T 1v77_A          195 AKASISMYPEIILKR  209 (212)
T ss_dssp             HHHTTTHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999853

PyMOL of 1v77

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A	Back alignment and structure

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A	Back alignment and structure

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A	Back alignment and structure

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}	Back alignment and structure

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*	Back alignment and structure

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A	Back alignment and structure

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A	Back alignment and structure

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1	Back alignment and structure

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		733
d1v77a_		202	c.6.3.2 (A:) Ribonuclease P protein component 3, R	6e-29

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 202	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  112 bits (281), Expect = 6e-29
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 121 YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDL 180
             L+ V   +     ++ E   VD I   +  +    +   + K  +++ V    +   L
Sbjct: 70  SYLIYVESNDLRVIRYSIE-KGVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPL 128

Query: 181 ILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTELRGPYDVANLSSLLGISMER 237
           +      R  ++                  L+S A    ++R P D+ +L  ++G+ + +
Sbjct: 129 LYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVIGMEIPQ 188

Query: 238 AKAAVSKNCRALI 250
           AKA++S     ++
Sbjct: 189 AKASISMYPEIIL 201

PyMOL of d1v77a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		733
d1v77a_		202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	99.97
d1m65a_		244	Hypothetical protein YcdX {Escherichia coli [TaxId	96.87
d1bf6a_		291	Phosphotriesterase homology protein {Escherichia c	88.27

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=1.7e-30  Score=254.01  Aligned_cols=184  Identities=14%  Similarity=0.116  Sum_probs=156.8

Q ss_pred             HHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCcccccccccccCCCCCCCCceeEEEEEEEeCChhhhhh
Q 004730           31 KAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQV  110 (733)
Q Consensus        31 ~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~dllgv~~ssgLrILsRLTIvvsD~sql~~  110 (733)
                      ++.+.||+.|+|++.++..        +||..+.+..+..                   .    -..|+|+..+|.+++.
T Consensus        15 ~l~~~~~~~v~~~~~~~~~--------~~~~~~~e~~~~~-------------------~----~~~i~i~~~~p~~i~~   63 (202)
T d1v77a_          15 ELAKEWFDEVVVSIKFNEE--------VDKEKLREARKEY-------------------G----KVAILLSNPKPSLVRD   63 (202)
T ss_dssp             HHHHHHCSEEEEEEEESSC--------CCHHHHHHHHHHH-------------------S----CEEEEEESCCHHHHHH
T ss_pred             HHHHhcCCeeEEeeeecCc--------CChhHhhHHhhhc-------------------c----ceeEEEEcCChHHHHH
Confidence            3455599999999997752        3343332222210                   0    1256777778888887


Q ss_pred             ccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccC-hHHHHH
Q 004730          111 LNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILD-VQLRRQ  189 (733)
Q Consensus       111 L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~D-s~sRrn  189 (733)
                      +.+  +  .++|||+|+|+|++++|+||++ +||||++|+..+++++|+|+++++|++|||+|||+|+++++. +..|++
T Consensus        64 ~~~--~--~~~~iv~V~ggd~~~Nr~A~e~-~VDiL~~p~~~r~~~~~~hvlak~A~e~gV~lEI~~s~ll~~~~~~R~~  138 (202)
T d1v77a_          64 TVQ--K--FKSYLIYVESNDLRVIRYSIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERAN  138 (202)
T ss_dssp             HHH--H--CSSSEEEEECSCHHHHHHHHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHH
T ss_pred             HHH--h--cCCcEEEEeCCCHHHHHHHHhC-CccEEecCccccCcccccHHHHHHHHHCCeEEEEEchhhhccCcccHHH
Confidence            753  2  3479999999999999999997 799999999999999999999999999999999999999986 778889


Q ss_pred             HHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHH
Q 004730          190 MISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALI  250 (733)
Q Consensus       190 ~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~nPrsLL  250 (733)
                      +++|++.+++++|  |.++||||||.++++||+|+|+++|+.+|||++++|+++++.+|+.+|
T Consensus       139 ~i~~~~~~l~l~kky~~piVisSdAh~~~dlr~p~dv~~L~~~~Gl~~~~ak~als~~P~~il  201 (202)
T d1v77a_         139 LLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVIGMEIPQAKASISMYPEIIL  201 (202)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHTTCCHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEEecCCCChhhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            9999999999997  677999999999999999999999999999999999999999999987

PyMOL of d1v77a_

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure