Citrus Sinensis ID: 004813
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMF6 | 730 | Pentatricopeptide repeat- | yes | no | 0.888 | 0.887 | 0.255 | 3e-53 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.864 | 0.835 | 0.239 | 6e-52 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.851 | 0.710 | 0.258 | 6e-48 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.866 | 0.828 | 0.238 | 5e-45 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.676 | 0.881 | 0.268 | 8e-45 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.636 | 0.731 | 0.261 | 3e-44 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.828 | 0.660 | 0.241 | 9e-44 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.831 | 0.961 | 0.235 | 1e-43 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.820 | 0.686 | 0.248 | 2e-43 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.776 | 0.516 | 0.246 | 2e-43 |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 170/666 (25%), Positives = 312/666 (46%), Gaps = 18/666 (2%)
Query: 54 IQSLR---HNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAG 110
+ SLR H ++P L ++L+ ++S+++++F W Q ++H+ D Y +I KLG G
Sbjct: 66 LDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANG 125
Query: 111 NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM-NSGGFKLSVDVF 169
+ ++ L M E IS++ + R+++ M N + + +
Sbjct: 126 EFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSY 185
Query: 170 NVVLGAIVEEK-RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228
NVVL +V A VF +M+ I P + T +++ N I+SAL R M
Sbjct: 186 NVVLEILVSGNCHKVAANVFY--DMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243
Query: 229 HKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKL 288
K GC PNS ++ +I L +RV++++ +L EMF +G + + +I LC+ +++
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 303
Query: 289 EEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDI 348
EA ++ M PD++TY L+N LC+ R+D A D+ + P +F +
Sbjct: 304 NEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTL 359
Query: 349 VRGLCEVGKFDESVNFLEDK-CGYVTSP----HNALLECCCNAGKFFLAKCILEKMADRK 403
+ G G+ D++ L D Y P +N+L+ G LA +L M ++
Sbjct: 360 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419
Query: 404 I-ADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDAL 462
+ S+ I + C+ +I +AY +L M + P+ ++ + CK +A+
Sbjct: 420 CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 479
Query: 463 RVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522
+FR++ + D +++ L+ GLC+V++I A+ + M G ++ ++N LI
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAF 539
Query: 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV 582
++ +A +L + G+ TY ++ GL + + +ML +G A
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINK 642
+ ILI + +++ F MV G PD T SL++GL ++ + K
Sbjct: 600 ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRK 659
Query: 643 LVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE- 701
L ++ D+ +N L++ L K G A LLD + G+VP+ T +L+ S + +E
Sbjct: 660 LQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQET 719
Query: 702 IDSRRF 707
+D RRF
Sbjct: 720 LDRRRF 725
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 161/671 (23%), Positives = 300/671 (44%), Gaps = 41/671 (6%)
Query: 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE 125
L+ L + D S+AL++F S + F Y +++L+LG +G+ ++M+ + ++M
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112
Query: 126 RYPNVREALISLVFSFVNHYRVNGAMRVLVNM-NSGGFKLSVDVFNVVLGAIVEEKRGFA 184
R + L+ S+ + + V+ M + G K +N +L +V+
Sbjct: 113 RCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLK 171
Query: 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244
+ +M GI P+V T N L++ L +++ A+ M G P+ +TF V+
Sbjct: 172 LVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVM 231
Query: 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALD-L 303
+G I +D ++ I +M + G I+ C+E ++E+A+ + M D
Sbjct: 232 QGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF 291
Query: 304 MPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVN 363
PD+ T+ L+N LC+ + A +I++ M+ G P + ++ GLC++G+ E+V
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVE 351
Query: 364 FLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEI 423
L+ SP+ ++N I LC+ ++
Sbjct: 352 VLDQMITRDCSPNTV------------------------------TYNTLISTLCKENQV 381
Query: 424 RKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKL 483
+A EL + ++PD T+++ + G C N+ A+ +F ++ ++ D +Y+ L
Sbjct: 382 EEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441
Query: 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT 543
++ LC K+ EA+ + M +GC+ S ++N LI G C K +A + G
Sbjct: 442 IDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGV 501
Query: 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCAL 603
S + TY ++ GL K +R +D ++ QM++EG D Y L+ +K A
Sbjct: 502 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 604 FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW 663
M G PD T +L+ GL ++ + S + + L YN +I GL+
Sbjct: 562 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLF 621
Query: 664 KEGLTSQASYLLDLMLGKGWV-PDATTHGLLV------GSSVGEEIDSRRFAFDSSSFPD 716
++ T++A L ML + PDA ++ ++ G + E +D + P+
Sbjct: 622 RKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE 681
Query: 717 SVS-DILAEGL 726
S +LAEGL
Sbjct: 682 FSSLYMLAEGL 692
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 173/668 (25%), Positives = 314/668 (47%), Gaps = 47/668 (7%)
Query: 69 VLDNTNDLSSALKIFKWV-SIQKRFQH-----TADTYCKMILKLGLAGNVEEMEGLCQNM 122
+L NTN+ A +IFK + S H T +++++ + ++E+ L +
Sbjct: 9 LLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSS 68
Query: 123 VKERYPNVREALISLV--FSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEK 180
++ +L+S+V F+ NH LV K SV ++N++L + ++E+
Sbjct: 69 SIQK--TKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKER 126
Query: 181 RGFADFV-FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239
R +FV ++YK+MV GI P T N L+ L +++ +++A + F M +KGC PN T
Sbjct: 127 R--VEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184
Query: 240 FEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299
F I+++G D + +L M G+ Y I+ CRE + +++ ++ + MR
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR 244
Query: 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIV---IGLT-PTDDVFVDIVRGLCEV 355
L+PD +T+ I+ LC+ ++ DA+ I DM + +GL P + +++G C+V
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304
Query: 356 GKFDESVNFLE-----DKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADC-DS 409
G +++ E D + S +N L+ GKF A+ +L++M D+ I S
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQS-YNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYS 363
Query: 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVS 469
+NI + LC+ + A ++G M + V PD TY + G C + + A + +++
Sbjct: 364 YNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMM 423
Query: 470 AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD 529
+ + ++ + + L+ L ++ +I+EA E+ M++ G L + + NI++ GLC ++D
Sbjct: 424 RNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELD 483
Query: 530 KAIRL-------RSLAYSS-GTSYTT---------------STYTKIMLGLVKLQRAKDL 566
KAI + S A + G SY TY+ ++ GL K R +
Sbjct: 484 KAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEA 543
Query: 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626
+ A+M+ E D AY I I +Q K+ M K G ET SL+ G
Sbjct: 544 KNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILG 603
Query: 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686
L +Q+ + ++++ + YN I L + A+ LLD M+ K P+
Sbjct: 604 LGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPN 663
Query: 687 ATTHGLLV 694
+ L+
Sbjct: 664 VFSFKYLI 671
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 153/642 (23%), Positives = 293/642 (45%), Gaps = 10/642 (1%)
Query: 61 LSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQ 120
L P H+ V+ D AL++F + + F+HT TY +I KLG G E ME +
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 121 NMVKERYPNVREAL-ISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEE 179
+M + ++ E + + + ++ +V A+ V M+ + +V +N ++ +V+
Sbjct: 65 DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDS 124
Query: 180 KRGFADFVF-VYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSR 238
G+ D VY M GI P+V + ++ +T+R +AL M +GC N
Sbjct: 125 --GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVV 182
Query: 239 TFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298
+ V+ G + + + G+M G+ L LS + ++ +LC++ ++E +L +
Sbjct: 183 AYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKV 242
Query: 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKF 358
++P+ TY I LC+ LD A ++ +I G P + +++ GLC+ KF
Sbjct: 243 IKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKF 302
Query: 359 DESVNFLEDKCGYVTSP----HNALLECCCNAGKFFLAKCIL-EKMADRKIADCDSWNIP 413
E+ +L P +N L+ C G LA+ I+ + + + + D ++
Sbjct: 303 QEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSL 362
Query: 414 IRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSL 473
I LC E +A L + + P+ Y+ + G +A ++ ++S + L
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422
Query: 474 VLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533
+ + +++ LV GLC++ +++A + M G +FNILI+G K++ A+
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALE 482
Query: 534 LRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593
+ + +G TY ++ GL K + +D++ M+ +GCA ++ + IL++S+
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 594 EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS 653
KL + M + PD T +L+ G L + K+ +V S+
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSST 602
Query: 654 -MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
YNI+I+ ++ + A L M+ + PD T+ L+V
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMV 644
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 134/499 (26%), Positives = 232/499 (46%), Gaps = 6/499 (1%)
Query: 137 LVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196
L+ F +++ A+ +L M G++ S+ + +L KR +D V + +MV+
Sbjct: 51 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR-ISDAVALVDQMVEM 109
Query: 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256
G P+ T L+ LF N+ A+ RM ++GC PN T+ +V+ GL +D +
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169
Query: 257 VSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINC 316
++L +M I+ ++ + II LC+ +++A+ LFK M + P+ +TY LI+C
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 317 LCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSP- 375
LC R DA+ +L DMI + P F ++ + GKF E+ +D P
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289
Query: 376 ---HNALLECCCNAGKFFLAKCILEKMADRK-IADCDSWNIPIRWLCENEEIRKAYELLG 431
+N+L+ C + AK + E M + D D++N I+ C+++ + EL
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR 349
Query: 432 RMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491
M +V D TY+ + G + ++A +VF+Q+ + + D ++YS L++GLC
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409
Query: 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT 551
K+ +A+EVF M K+ L + +I G+C KVD L G TY
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469
Query: 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611
++ GL + ++ +L +M +G D Y LI++ A M
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC 529
Query: 612 GLVPDRETMLSLLHGLADG 630
V D T+ + + L DG
Sbjct: 530 RFVGDASTIGLVANMLHDG 548
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 230/498 (46%), Gaps = 34/498 (6%)
Query: 137 LVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196
L+ F +++ A+ +L M G++ S+ + +L KR +D V + +MV+
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR-ISDAVALVDQMVEM 184
Query: 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256
G P+ T L+ LF N+ A+ RM ++GC PN T+ +V+ GL D +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 257 VSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINC 316
+++L +M I+ ++ + II LC+ +++A+ LFK M + P+ +TY LI+C
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 317 LCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPH 376
LC R DA+ +L DMI + P F
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTF------------------------------- 333
Query: 377 NALLECCCNAGKFFLAKCILEKMADRKI-ADCDSWNIPIRWLCENEEIRKAYELLGRMVV 435
NAL++ GKF A+ + + M R I D ++N + C ++ + KA ++ MV
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 436 SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITE 495
PD TY+ + G CK ED +FR++S + LV D+++Y+ L++GL
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 453
Query: 496 AVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555
A +VF M +G +++IL+ GLC K++KA+ + S YT ++
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513
Query: 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615
G+ K + D + + ++G +V Y +I + + L++ M + G +P
Sbjct: 514 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 573
Query: 616 DRETMLSLLHG-LADGSQ 632
+ T +L+ L DG +
Sbjct: 574 NSGTYNTLIRAHLRDGDK 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 161/666 (24%), Positives = 294/666 (44%), Gaps = 62/666 (9%)
Query: 54 IQSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKL---GLAG 110
++S+ +SP H+ + D +AL W+S R++H+ +Y ++ L G G
Sbjct: 81 LKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVG 140
Query: 111 NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFN 170
V ++ L M+K +V +AL L ++N R + +KL + +N
Sbjct: 141 VVFKIRLL---MIKS-CDSVGDALYVLDLC----RKMNKDERFELK-----YKLIIGCYN 187
Query: 171 VVLGAIVEEKRGFAD-FVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMH 229
+L ++ + G D VY EM++ + PN+ T N ++ + +E A ++
Sbjct: 188 TLLNSLA--RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 230 KKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLE 289
+ G P+ T+ +I G +D + + EM G + YT +I LC +++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 290 EAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349
EA+ LF M+ + P TY LI LC + R +A +++++M G+ P + ++
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 350 RGLCEVGKFDESVNFLEDKCGYVTSP----HNALLECCCNAGKFFLAKCILEKMADRKIA 405
LC KF+++ L P +NAL+ C G A ++E M RK++
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 406 -DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRV 464
+ ++N I+ C++ + KA +L +M+ V+PD TY++ + G+C+ N++ A R+
Sbjct: 426 PNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 465 FRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524
++ + LV D +Y+ +++ LC+ +++ EA ++F + + G + + + LI G C
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEA 584
KVD+A ++L +ML + C +
Sbjct: 545 AGKVDEA-----------------------------------HLMLEKMLSKNCLPNSLT 569
Query: 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLV 644
+ LI + KLK+ L MVK GL P T L+H L S +++
Sbjct: 570 FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQML 629
Query: 645 SDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDS 704
S D+ Y I +EG A ++ M G PD T+ L+ ++
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY--GDLGQ 687
Query: 705 RRFAFD 710
FAFD
Sbjct: 688 TNFAFD 693
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 146/619 (23%), Positives = 288/619 (46%), Gaps = 13/619 (2%)
Query: 81 KIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFS 140
++F S RF H + +L G G C V++ + VR + +
Sbjct: 3 RLFAISSTGNRFVH------RSLLGKGKCGTAPPSFSHCSFWVRD-FSGVRYDYRKISIN 55
Query: 141 FVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVP 200
+N +++ A+ + +M S+ F+ +L AI + + F + + ++M GI
Sbjct: 56 RLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNK-FDLVISLGEQMQNLGISH 114
Query: 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260
N+ T + L+ +++ AL +M K G P+ T ++ G +R+ D+VS++
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCEN 320
G+M ++G Q + + +I L R N+ EA+ L M PD +TY ++N LC+
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Query: 321 LRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSP----H 376
+D A +L+ M + P ++ I+ LC ++++N + P +
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 377 NALLECCCNAGKFFLAKCILEKMADRKI-ADCDSWNIPIRWLCENEEIRKAYELLGRMVV 435
N+L+ C CN G++ A +L M +RKI + +++ I + ++ +A +L M+
Sbjct: 295 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 354
Query: 436 SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITE 495
S+ PD TYS+ + G C ++A +F + ++ + ++Y+ L++G C+ +++ E
Sbjct: 355 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 496 AVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555
+E+F MS+ G ++ ++ LI+G R+ D A + S G TY+ ++
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615
GL + + LVV + D+ Y I+I+ M + K++D F + G+ P
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675
+ T +++ G + ++ + + DS YN LI ++G + ++ L+
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELI 594
Query: 676 DLMLGKGWVPDATTHGLLV 694
M +V DA+T GL+
Sbjct: 595 REMRSCRFVGDASTIGLVT 613
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/648 (24%), Positives = 283/648 (43%), Gaps = 50/648 (7%)
Query: 91 RFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGA 150
+F+ Y +I + + M L Q M + Y +L+ F RV+ A
Sbjct: 163 KFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSA 222
Query: 151 MRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA-GIVPNVDTLNYLL 209
+ +L M S + ++NV + + K G D + + ++A G+ P+ T ++
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSF--GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
Query: 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ 269
VL + NR++ A++ F + K P + + +I G + + D++ S+L G
Sbjct: 281 GVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSI 340
Query: 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDI 329
+ Y CI+ L + K++EA+++F+ M+ D P+ TY LI+ LC +LD A ++
Sbjct: 341 PSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 330 LEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHN----ALLECCCN 385
+ M GL P +V LC+ K DE+ E+ V +P +L++
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 386 AGKFFLAKCILEKMADRKIADCDSWNIPIRWLCEN--EEIRK--AYELLGRMVVSSVVPD 441
G+ A + EKM D +DC + +I L +N RK +++ M+ + PD
Sbjct: 460 VGRVDDAYKVYEKMLD---SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516
Query: 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFC 501
+ ++ K E +F ++ A+ V D+ SYS L+ GL + E E+F
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 502 CMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561
M + GC L + ++NI+I G C KV+KA +L + G T TY ++ GL K+
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKID 636
Query: 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML 621
R + ++ + + L+V Y LI + ++ + L +++ GL P+ T
Sbjct: 637 RLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWN 696
Query: 622 SLLHGLADGSQLH-----------------LVSSGI-----------NK-LVSDSEVLDS 652
SLL L +++ V+ GI NK V E+
Sbjct: 697 SLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Query: 653 SM------YNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
M Y +I+GL K G ++A L D G VPD+ + ++
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 151/612 (24%), Positives = 263/612 (42%), Gaps = 46/612 (7%)
Query: 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFV 187
P+V + LI + ++ + ++ + M GF SV N +LG++V+ + +
Sbjct: 123 PSVYDILIRV---YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179
Query: 188 FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGL 247
F+ KEM+K I P+V T N L+ VL E + ++M K G P T+ V+
Sbjct: 180 FL-KEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238
Query: 248 IANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDE 307
R ++ +L M G+ ++ Y +I LCR N++ + L + MR + P+E
Sbjct: 239 CKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298
Query: 308 LTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVN--FL 365
+TY LIN ++ A+ +L +M+ GL+P F ++ G G F E++ ++
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358
Query: 366 EDKCGYVTS--PHNALLECCCNAGKFFLAKCILEKMADRKI-ADCDSWNIPIRWLCENEE 422
+ G S + LL+ C +F LA+ +M + ++ I LC+N
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418
Query: 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY------------------------ 458
+ +A LL M + PD TYSA + G CK+ +
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478
Query: 459 -----------EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG 507
++A+R++ + + D +++ LV LC+ K+ EA E CM+ +G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538
Query: 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLL 567
++ SF+ LI G + KA + G T TY ++ GL K ++
Sbjct: 539 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 598
Query: 568 VVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627
L + A+D Y L+ +M + L F MV+ ++PD T SL+ GL
Sbjct: 599 KFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGL 658
Query: 628 ADGSQLHLVSSGINKLVSDSEVLDSS-MYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686
+ + + + VL + MY ++G++K G Y + M G PD
Sbjct: 659 CRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPD 718
Query: 687 -ATTHGLLVGSS 697
TT+ ++ G S
Sbjct: 719 IVTTNAMIDGYS 730
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 224122828 | 724 | predicted protein [Populus trichocarpa] | 0.991 | 0.998 | 0.598 | 0.0 | |
| 224124330 | 725 | predicted protein [Populus trichocarpa] | 0.993 | 0.998 | 0.593 | 0.0 | |
| 225450452 | 730 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.998 | 0.575 | 0.0 | |
| 147780248 | 730 | hypothetical protein VITISV_037758 [Viti | 1.0 | 0.998 | 0.572 | 0.0 | |
| 255543026 | 739 | pentatricopeptide repeat-containing prot | 0.993 | 0.979 | 0.557 | 0.0 | |
| 356574070 | 720 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.997 | 0.518 | 0.0 | |
| 449437884 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.997 | 0.459 | 1e-180 | |
| 242037815 | 699 | hypothetical protein SORBIDRAFT_01g00529 | 0.953 | 0.994 | 0.410 | 1e-143 | |
| 414873332 | 722 | TPA: hypothetical protein ZEAMMB73_94897 | 0.971 | 0.980 | 0.394 | 1e-139 | |
| 297601813 | 728 | Os03g0795400 [Oryza sativa Japonica Grou | 0.931 | 0.932 | 0.407 | 1e-137 |
| >gi|224122828|ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|222857302|gb|EEE94849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/725 (59%), Positives = 553/725 (76%), Gaps = 2/725 (0%)
Query: 5 LSSLTISNKIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSPD 64
LS T+S I KW+NL S ISS+SC N I ++ E + + TD++AKIQSLR+ L PD
Sbjct: 2 LSPSTLSKTIPKWLNLKSFISSVSCTNAIQINPEINQ-NAPNITDFDAKIQSLRNKLCPD 60
Query: 65 HLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVK 124
+LI+VL +T+D++SA+K+FKW S+Q+RF HT DTY +I KLG+A NVEEMEG CQNMVK
Sbjct: 61 YLIKVLKSTSDINSAVKLFKWASLQRRFNHTDDTYYWIIFKLGMAENVEEMEGFCQNMVK 120
Query: 125 ERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184
+R P V + L+SLV +FV + R+N A+RVL NMN G K S+DVFN VLGA+VEEKRGF
Sbjct: 121 DRCPGVEDVLLSLVDAFVRNCRLNEALRVLFNMNLAGIKPSIDVFNFVLGALVEEKRGFQ 180
Query: 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244
D VFVYKEMVKAG+ P++DTLNYLLEVLFET+R++SALDQ+RR++KKGC PNSRTFEIVI
Sbjct: 181 DVVFVYKEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCIPNSRTFEIVI 240
Query: 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLM 304
KGLIA +RVDDSV+IL EM +LG EL F+ I + C E++L++ IRLF+ M+ +
Sbjct: 241 KGLIAKNRVDDSVTILHEMLELGCLPELRFFRSTILLFCGEDRLQQGIRLFRKMKDSNFT 300
Query: 305 PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364
PD Y LI CLC++LRLD+A ++LE+M+ LTP ++VFVDIV G C++GK +E++
Sbjct: 301 PDPFIYGALIQCLCKHLRLDEAANLLEEMMESRLTPDNNVFVDIVNGFCKLGKINEAIKL 360
Query: 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIR 424
LEDK +VTSPHNALL CCC+A KFF+AK +LEKM++R I DCDSWNI IRWLCE +
Sbjct: 361 LEDKHVHVTSPHNALLRCCCDADKFFMAKGLLEKMSERNIDDCDSWNILIRWLCEKVGVM 420
Query: 425 KAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV 484
AYELLGRM++SS++PDCATYSA V G C+L YEDAL++F Q+ A+ +LD SYS+L+
Sbjct: 421 NAYELLGRMIISSLIPDCATYSALVAGNCRLSKYEDALQLFLQLHAKFWILDPASYSELI 480
Query: 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544
EGLC+ EK EAV+VFC MS+N CSL S SFN+LI G+C M +++A+RL+ L Y+SGTS
Sbjct: 481 EGLCRGEKYLEAVKVFCYMSENRCSLQSLSFNMLIEGVCNMGMLNEAVRLQLLGYNSGTS 540
Query: 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604
+ +T IMLGL K + K +L L+QMLV+G LD+EAYCILIQSM Q ++KDC LF
Sbjct: 541 CSNATCNYIMLGLSKSDKGKHMLAFLSQMLVQGTNLDMEAYCILIQSMIAQKQIKDCTLF 600
Query: 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664
NVMV GLVPD +T+ LL LA+ SQL+L+S ++KLVSD EVLDS+MYNILINGLWK
Sbjct: 601 LNVMVNEGLVPDSDTLYKLLSCLANHSQLYLISLSLDKLVSDCEVLDSAMYNILINGLWK 660
Query: 665 EGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVSDILAE 724
EG ++A LLDLML KGWVPD+ THGLL+GS E + + S DSVSDIL E
Sbjct: 661 EGNKNEAHRLLDLMLEKGWVPDSMTHGLLIGSGNREGTGKGKLTY-VDSIKDSVSDILVE 719
Query: 725 GLGNT 729
GLG T
Sbjct: 720 GLGET 724
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124330|ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|222871421|gb|EEF08552.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/725 (59%), Positives = 548/725 (75%), Gaps = 1/725 (0%)
Query: 5 LSSLTISNKIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSPD 64
LS T +I KWVNL + ISS+SC NTI ++ E + + D++ KIQSLR+ L PD
Sbjct: 2 LSPSTFLKRIPKWVNLKAFISSVSCTNTIQINPEINQ-NTPNFPDFDVKIQSLRNKLYPD 60
Query: 65 HLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVK 124
+LI+VL +T+D++SA+KIFKW ++Q++F HTADTY +I KLG+AGNVEEMEG CQNMVK
Sbjct: 61 NLIKVLKSTSDVNSAVKIFKWAALQRKFNHTADTYYWIIFKLGMAGNVEEMEGFCQNMVK 120
Query: 125 ERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184
ER + L+SLV +FV + R+N AMRVL NMN G K S+DVFN VLGA+VEEKRGF
Sbjct: 121 ERCTGEEDVLVSLVDAFVRNCRLNEAMRVLFNMNLAGIKPSIDVFNFVLGALVEEKRGFQ 180
Query: 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244
D VFVYKEMVKAG+ P++DTLNYLLEVLFET+R++SALDQ+RR++KKGC P+ +TFEIVI
Sbjct: 181 DVVFVYKEMVKAGVAPSIDTLNYLLEVLFETDRVDSALDQYRRINKKGCRPDGKTFEIVI 240
Query: 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLM 304
KGLIAN RVDDSVSIL EM +LG ELSFY IP+ CRE++LEE IRLF+ M+ +
Sbjct: 241 KGLIANDRVDDSVSILHEMLELGCLPELSFYRTTIPLFCREDRLEEGIRLFRKMKESNFT 300
Query: 305 PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364
PD Y LI CLC+ LRLD+A ++LE+M+ L ++VFVD+V G C++GK +E+V
Sbjct: 301 PDSFIYGALIQCLCKQLRLDEAVNLLEEMMESQLEGDNNVFVDVVNGFCKLGKINEAVKL 360
Query: 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIR 424
LEDK TSPHNALL CCC+A KF +AK +LEKM++R I DCDSWNI IRWLCE EE+
Sbjct: 361 LEDKHVLETSPHNALLRCCCDADKFLMAKGLLEKMSERNIDDCDSWNILIRWLCEREEMV 420
Query: 425 KAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV 484
KAYELLGRM++SS++PD ATYSA V G C+L YEDAL++F Q+ A+ +LD SYS+L+
Sbjct: 421 KAYELLGRMIISSLIPDYATYSALVAGNCRLSKYEDALQLFLQLHAKCWILDPASYSELI 480
Query: 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544
EGLC+ EK EAV+VFC MS+N CSL S F +LI G+C M + +A+RL+SLAY+SGTS
Sbjct: 481 EGLCRGEKYLEAVKVFCYMSENRCSLQSLPFIMLIKGICDMGMIGEAVRLQSLAYNSGTS 540
Query: 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604
+TY +ML L K ++ + +L L++MLV+G L+ EAYCILIQS+ QN++KDC++F
Sbjct: 541 CVNATYNYVMLRLSKSEQGRHVLAFLSRMLVQGGNLNTEAYCILIQSLIAQNRIKDCSMF 600
Query: 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664
NVM+ GLVPD +T+ +LL LA SQL+L+S ++KL SD EVLDS+MYNILING+WK
Sbjct: 601 LNVMINKGLVPDSDTLYNLLSCLAKHSQLYLISVSLDKLASDCEVLDSAMYNILINGMWK 660
Query: 665 EGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVSDILAE 724
EG + A LLDLML KGWVPDA THGLL+GS+ EE A+ S D V DILAE
Sbjct: 661 EGNKNDARRLLDLMLEKGWVPDAMTHGLLIGSADMEEKGEGMLAYVDLSTKDGVGDILAE 720
Query: 725 GLGNT 729
GLG T
Sbjct: 721 GLGET 725
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450452|ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62590-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/730 (57%), Positives = 532/730 (72%), Gaps = 1/730 (0%)
Query: 1 MAIKLSSLTISNKIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQT-TDYEAKIQSLRH 59
MA+KLSSLT+S++I KWV L + +SS+SCAN I E D K+ ++E K Q LR+
Sbjct: 1 MAVKLSSLTLSSRIPKWVPLIASMSSISCANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60
Query: 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLC 119
L PD LIRVLD T+DL+SA+K+FKW S QKRF+HTADTY ++ILKLG+ G +E+ME C
Sbjct: 61 RLMPDDLIRVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAFC 120
Query: 120 QNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEE 179
MV+E+ P E LI+L+ SFV H R++ A+RVLV M S G+K S+ FN +LGA+V E
Sbjct: 121 SEMVREKCPGGEETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEFNGLLGALVRE 180
Query: 180 KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239
+R F + + VYKE+VKAGIVPNVDTLNYL+E LFE N I+ ALDQ+RRM KKGC PNS+T
Sbjct: 181 RRDFREILLVYKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKT 240
Query: 240 FEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299
F+I+I GLIA + V+ SV +LGEM +L + +LSFYT +IP+ C +++EE + LF MR
Sbjct: 241 FDILISGLIARNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMR 300
Query: 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFD 359
A L+PD L Y LI CL E+L LDDA ++LE+MI GLTP DDVFV IV+G C++GKF+
Sbjct: 301 ASKLVPDLLIYRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGKFN 360
Query: 360 ESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419
E+ FL+DKC + T PHNALLE C AG F AK LEK+ DR I D SWNI +RWLCE
Sbjct: 361 EAEFFLKDKCVFGTDPHNALLEGYCTAGDFHGAKVFLEKIFDRNIIDNFSWNILVRWLCE 420
Query: 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSIS 479
N KA+ELL RM+VSS PD ATYSA V+G CKL +D L +F QV +++ VLDS S
Sbjct: 421 NAWTSKAFELLSRMIVSSFTPDSATYSALVIGNCKLSKCKDGLELFHQVCSKNWVLDSAS 480
Query: 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY 539
Y++LVE LCQ+E+I EA EVFC MS NGC+L SSS ++L+ G+CV KVD+AIRL LA
Sbjct: 481 YAELVETLCQMERIQEAAEVFCYMSSNGCALKSSSLDMLMKGICVTGKVDEAIRLLVLAC 540
Query: 540 SSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599
SGTS T ++Y IMLGL KL + D+LVVL++MLVEGC LDVEAYCIL+QSM ++ +
Sbjct: 541 YSGTSCTNASYKAIMLGLSKLGKDSDILVVLSKMLVEGCILDVEAYCILVQSMCALSRTE 600
Query: 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659
D A FFN+MV GLVPD ET+ +LL L SQLH + + I KL SD E+L+SSMYN+LI
Sbjct: 601 DIARFFNLMVSEGLVPDSETVATLLSCLTKHSQLHTILTAIGKLASDGEILNSSMYNLLI 660
Query: 660 NGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVS 719
GL KEG S+A LLDLML KGWVPDA+THGLL+GS V E +++S D +
Sbjct: 661 IGLLKEGYKSEACRLLDLMLEKGWVPDASTHGLLIGSVVSEVPHKEAVEYENSCMQDKIG 720
Query: 720 DILAEGLGNT 729
+ILAEGL T
Sbjct: 721 NILAEGLRET 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780248|emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/730 (57%), Positives = 529/730 (72%), Gaps = 1/730 (0%)
Query: 1 MAIKLSSLTISNKIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQT-TDYEAKIQSLRH 59
MA+KLSSLT+S +I KWV L + +SS+S AN I E D K+ ++E K Q LR+
Sbjct: 1 MAVKLSSLTLSRRIPKWVPLIASMSSISSANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60
Query: 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLC 119
L PD LIRVLD T+DL+SA+K+FKW S QKRF+HTADTY ++ILKLG+ G +E+ME C
Sbjct: 61 RLMPDDLIRVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDMEAFC 120
Query: 120 QNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEE 179
MV+E+ P E LI+L+ SFV H R++ A+RVLV M S G+K S+ FN +LGA+V E
Sbjct: 121 SEMVREKCPGGEETLIALISSFVKHRRLSEAIRVLVIMTSNGYKFSIIEFNGLLGALVRE 180
Query: 180 KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239
+R F + + VYKE+VKAGIVPNVDTLNYL+E LFE N I+ ALDQ+RRM KKGC PNS+T
Sbjct: 181 RRDFREILLVYKEIVKAGIVPNVDTLNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKT 240
Query: 240 FEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299
F+I+I GLIA + V+ SV +LGEM +L + +LSFYT +IP+ C +++EE + LF MR
Sbjct: 241 FDILISGLIARNLVEKSVVVLGEMIELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMR 300
Query: 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFD 359
A L+PD L Y LI CL E+L LDDA ++LE+MI GLTP DDVFV IV+G C++GKF+
Sbjct: 301 ASKLVPDLLIYRVLIQCLSESLWLDDAINLLEEMIGCGLTPEDDVFVYIVKGFCKLGKFN 360
Query: 360 ESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419
E+ FL+DKC + T PHNALLE C AG F AK LEK+ DR I D SWNI +RWLCE
Sbjct: 361 EAEFFLKDKCVFGTDPHNALLEGYCTAGDFHGAKVFLEKIFDRNIIDNFSWNILVRWLCE 420
Query: 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSIS 479
N KA+ELL RM+VSS PD ATYSA V+G CKL +D L +F QV +++ VLDS S
Sbjct: 421 NAWTSKAFELLSRMIVSSFTPDSATYSALVIGNCKLSKCKDGLELFHQVCSKNWVLDSAS 480
Query: 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY 539
Y++LVE LCQ+E+I EA EVFC MS N C+L SSS ++L+ G+CV KVD+AIRL LA
Sbjct: 481 YAELVETLCQMERIQEAAEVFCYMSSNRCALKSSSLDMLMKGICVTGKVDEAIRLLVLAC 540
Query: 540 SSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599
SGTS T ++Y IMLGL KL + D+LVVL++MLVEGC LDVEAYCIL+QSM ++ +
Sbjct: 541 YSGTSCTNASYKAIMLGLSKLGKDSDILVVLSKMLVEGCILDVEAYCILVQSMCALSRTE 600
Query: 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659
D A FFN+MV GLVPD ET+ +LL L SQLH + + I KL SD E+L+SSMYN+LI
Sbjct: 601 DIARFFNLMVSEGLVPDSETVATLLSCLTKHSQLHTILTAIGKLASDGEILNSSMYNLLI 660
Query: 660 NGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVS 719
GL KEG S+A LLDLML KGWVPDA+THGLL+GS V E +++S D +
Sbjct: 661 IGLLKEGYKSEACRLLDLMLEKGWVPDASTHGLLIGSVVSEVPHKEAVEYENSCMQDKIG 720
Query: 720 DILAEGLGNT 729
+ILAEGL T
Sbjct: 721 NILAEGLRET 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543026|ref|XP_002512576.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548537|gb|EEF50028.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/725 (55%), Positives = 534/725 (73%), Gaps = 1/725 (0%)
Query: 5 LSSLTISNKIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSPD 64
LS LT+S +I +WVNL S + S+SC ++I ++ E D TTD++AKI LR+ L PD
Sbjct: 16 LSPLTLSKRISRWVNLNSALFSVSCTSSIQINPEIDQ-SILNTTDFDAKIHILRNKLYPD 74
Query: 65 HLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVK 124
LI+VL +T+D++SA+KIFKW S+QKRF HT+DTY +ILKLGLAGN++EMEG CQN VK
Sbjct: 75 SLIKVLQSTSDINSAVKIFKWASLQKRFNHTSDTYFWIILKLGLAGNLKEMEGFCQNWVK 134
Query: 125 ERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184
+ V A+ SL+ SFV H+R+N A+ +LVN+ GG+K S++VFN++LGA+VE+K+GF
Sbjct: 135 DGCSGVEHAVFSLIASFVRHHRLNEAICILVNLCLGGYKPSINVFNMILGALVEDKKGFK 194
Query: 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244
+ VFVYKEMVKAG+ P +DTLN+L+EVLF+T R++SALDQ+RRM+KKGC NSRTF+IVI
Sbjct: 195 EVVFVYKEMVKAGVAPTIDTLNHLMEVLFDTGRVDSALDQYRRMNKKGCSRNSRTFQIVI 254
Query: 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLM 304
KGLI N++VD+S++IL EM ++G ELSFYTCIIP LCRE+K EEAIRLF+MMRA +
Sbjct: 255 KGLIVNNQVDESIAILHEMLNIGCLPELSFYTCIIPELCREHKSEEAIRLFRMMRASKFV 314
Query: 305 PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364
P+ + Y LI C C+NL+LDDA ++LE+M+ LTP +DV +D+V C +GK +E+ F
Sbjct: 315 PNSVIYGALIQCFCKNLQLDDAVNLLEEMVESCLTPDNDVVIDVVIAFCRLGKTNEAAKF 374
Query: 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIR 424
LED TSP+N LL CC+AGKF AK +LEKM++R +ADCDSWNI IR LCE IR
Sbjct: 375 LEDINVLETSPYNTLLGACCDAGKFIEAKGLLEKMSERSLADCDSWNILIRCLCEKAAIR 434
Query: 425 KAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV 484
KA ELLGRM++SS+VP+ ATYSA VLG C+L EDAL++F Q+ + +LD +SYS+L+
Sbjct: 435 KASELLGRMIISSLVPNRATYSALVLGHCRLNKCEDALQLFLQLCTKCWILDYVSYSELI 494
Query: 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544
EGLC+ K EA EVF M NGC SF+ LI G+C VDKA++L+ +A+ G
Sbjct: 495 EGLCEAGKHLEATEVFHYMFMNGCLPQYLSFSKLIKGICEKGMVDKAVKLQQMAHDFGMC 554
Query: 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604
+TY IMLGL K + +++LV L+QMLV+GC +D EAYCILI+SM Q++ KD ALF
Sbjct: 555 CANATYNSIMLGLSKSDKGRNVLVFLSQMLVKGCNVDAEAYCILIKSMIAQDQEKDSALF 614
Query: 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664
FN MV GL PD +T+ LL LA+ S+L+L+ + I+KL+ +SEVLDS MYNIL+ G WK
Sbjct: 615 FNAMVNEGLKPDSDTLHKLLSYLANRSRLYLILATIDKLILNSEVLDSGMYNILVYGFWK 674
Query: 665 EGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVSDILAE 724
E L ++ LLD ML KGWVPDA TH LL+GS GEE + + + + D V DILAE
Sbjct: 675 ERLKNEGRRLLDFMLEKGWVPDAATHRLLMGSVEGEESNEKMAIREKFTINDGVLDILAE 734
Query: 725 GLGNT 729
GL T
Sbjct: 735 GLSET 739
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574070|ref|XP_003555175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/731 (51%), Positives = 512/731 (70%), Gaps = 13/731 (1%)
Query: 1 MAIKLSSLTISNKIIKWVNLTS-CISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRH 59
MAIKL S + ++WV L+S CI+ +S ++K +++++ + L++
Sbjct: 1 MAIKLPSSAHPTRFLRWVYLSSSCIADIS--------ETPGILKPKDSSEFDQNLNFLKN 52
Query: 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLC 119
L+PD+LIR LD T+DL+SA++IFKW S QK F HT++TY ++ILKLG+AG V EM C
Sbjct: 53 KLAPDNLIRALDRTSDLNSAVRIFKWASRQKSFHHTSNTYFRIILKLGMAGKVLEMRDFC 112
Query: 120 QNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIV-E 178
+ MVK+R P EAL++LV +FV H+R+ A+ VLVNMN GG++ ++VFNV+LGA+V
Sbjct: 113 EYMVKDRCPGAEEALVALVHTFVGHHRIKEAIAVLVNMNLGGYRPPIEVFNVLLGALVGR 172
Query: 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSR 238
E R F +FVYKEMVKA ++P VDTLNYLLEVLF TNR E AL QFRRM+ KGC PNS+
Sbjct: 173 ESRDFQSALFVYKEMVKACVLPTVDTLNYLLEVLFATNRNELALHQFRRMNNKGCDPNSK 232
Query: 239 TFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298
TFEI++KGLI + +VD++ ++L +M Q +L FYTCIIP+ CRENK+EEA++LFKMM
Sbjct: 233 TFEILVKGLIESGQVDEAATVLEQMLKHKCQPDLGFYTCIIPLFCRENKVEEAVKLFKMM 292
Query: 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKF 358
+ D +PD YE L+ C C NL+LD A ++ +MI IG+ P +V VD++ CE+GK
Sbjct: 293 KDSDFVPDSFIYEVLVRCFCNNLQLDSAVSLINEMIEIGMPPKHNVLVDMMNCFCELGKI 352
Query: 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLC 418
+E++ FLED + T+P N LLE CCNAG+ A +LE M++R IADC SWNI IRWLC
Sbjct: 353 NEAIMFLEDTQVHETAPFNTLLEGCCNAGEVLAANVLLETMSERNIADCQSWNILIRWLC 412
Query: 419 ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI 478
ENEE KAY LLGRM+ S V+ D ATYSA V+GKC+L YE+A+ +F Q+ A+ VLD
Sbjct: 413 ENEETNKAYILLGRMIKSFVILDHATYSALVVGKCRLGKYEEAMELFHQIYARCWVLDFA 472
Query: 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538
SYS+LV GL ++ +A+EVF MS CSL S SF LI +C +V++AIRL LA
Sbjct: 473 SYSELVGGLSDIKHSQDAIEVFHYMSMKRCSLHSLSFYKLIKCVCDSGQVNQAIRLWQLA 532
Query: 539 YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL 598
Y G S +T+T IM L K +RA+DLL L+QML+ G LD+EAYCIL QSMS+ NK+
Sbjct: 533 YFCGISCCIATHTTIMRELSKSRRAEDLLAFLSQMLMVGSNLDLEAYCILFQSMSKHNKV 592
Query: 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658
K+C LFFN+MV GL+PD + + L +A+ SQL ++ S I++ +SD ++L+ +M+ +L
Sbjct: 593 KECVLFFNMMVHEGLIPDPDRLFDQLSFIANHSQLSMIPSAIDR-ISDGDILNPAMFGLL 651
Query: 659 INGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSV 718
I L KEG +A LLDLML KGW+PDATTH LL+GS V E S+ FD+S+ DSV
Sbjct: 652 ITALLKEGKEHEARRLLDLMLEKGWLPDATTHNLLIGSDVRER--SQAMLFDNSASLDSV 709
Query: 719 SDILAEGLGNT 729
S ILAEGLG+
Sbjct: 710 SYILAEGLGDA 720
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437884|ref|XP_004136720.1| PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Cucumis sativus] gi|449501182|ref|XP_004161300.1| PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 336/731 (45%), Positives = 479/731 (65%), Gaps = 5/731 (0%)
Query: 1 MAIKLSSLTISNKIIKWVNLTSCISSLSCANTIP--LSSETDMIKSHQTTDYEAKIQSLR 58
MA +L T+ K +K V SC+S + + L + + + Q+T + +
Sbjct: 1 MAARLMPSTLMKKFLKGVVPNSCLSPILSGIHVDTFLENNQNCPRLKQSTQF---LSDKS 57
Query: 59 HNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGL 118
+ + + ++ LD +L+S ++IFK ++IQK + TY + ILKLGL GN+EEME
Sbjct: 58 VSNNSVNSVKGLDYDKNLNSEVEIFKSLAIQKGIFQSVQTYYETILKLGLDGNIEEMEMT 117
Query: 119 CQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVE 178
C+++V E V E +++LV + V RV A+RVL +++ G + SV+ FNVVL +VE
Sbjct: 118 CRDLVNEGCSGVEEVIVTLVNTLVRRGRVREALRVLPHISLVGLRPSVETFNVVLAVLVE 177
Query: 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSR 238
E R + +FVYKEMVKAGIVPNVDTLN+LL LF +I++A++QFRRM KKGC PNS+
Sbjct: 178 EDRDIQEVLFVYKEMVKAGIVPNVDTLNFLLAALFHAEQIKTAMNQFRRMRKKGCSPNSK 237
Query: 239 TFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298
TFE+++ GLI + VD++V +LG M+ + +L LSFYTC I + CRE++++ LF MM
Sbjct: 238 TFEVLVNGLITKNLVDEAVLVLGIMYKIRCELHLSFYTCAISLFCREDRIDVGSWLFTMM 297
Query: 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKF 358
+A +++P L Y LI LC++L LD A +LE+M+ GL P + V+V IV E+GK
Sbjct: 298 KASNIVPGTLIYSTLIQSLCKSLSLDKALFLLEEMVENGLIPEESVYVSIVEVFFELGKT 357
Query: 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLC 418
DE++ F+ED+C + TSPHNALLE C NAGK LA CIL KM+ I DC SWNI I WLC
Sbjct: 358 DEAIKFVEDRCAFYTSPHNALLEGCTNAGKILLANCILGKMSKMNIDDCKSWNIVIGWLC 417
Query: 419 ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI 478
N +I A+E LG+M+V S VP+ TY+A ++G CK YE AL++ +V ++ +L++
Sbjct: 418 NNAKIGNAFEFLGKMIVLSFVPNEDTYAALIVGNCKSRRYEAALQLMNEVHSRCWILNAG 477
Query: 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538
YS+L+EGLCQ + EA EVFC MSKN L S F+ LI G+C + VD+A+ L LA
Sbjct: 478 CYSELIEGLCQANRTLEAAEVFCHMSKNRHPLHPSLFDTLIKGMCDLGHVDEALVLLQLA 537
Query: 539 YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL 598
+GTS + TY I+ L K +A+ L+VL+QMLV GC LD+E Y ILI S S N++
Sbjct: 538 SYAGTSCKSVTYASIIHELSKSNKAETALLVLSQMLVLGCNLDLETYYILIHSFSSINRV 597
Query: 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658
K+ L FN MV L+PD E + L +A+ SQLH++S+ I+KLV+ +++++++ YN+L
Sbjct: 598 KESILLFNHMVNEALLPDSERLYDLFLCIANHSQLHMISTTIDKLVTHTDLVNTATYNLL 657
Query: 659 INGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDSSSFPDSV 718
INGLWKE +A LLD ML KGWVPDATTHGLL+GS E+ + ++S+ D+V
Sbjct: 658 INGLWKEDRKYEACKLLDSMLEKGWVPDATTHGLLIGSLFQEKTGDKVLISENSAIEDNV 717
Query: 719 SDILAEGLGNT 729
S IL EGLGN+
Sbjct: 718 SSILVEGLGNS 728
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242037815|ref|XP_002466302.1| hypothetical protein SORBIDRAFT_01g005290 [Sorghum bicolor] gi|241920156|gb|EER93300.1| hypothetical protein SORBIDRAFT_01g005290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 287/699 (41%), Positives = 425/699 (60%), Gaps = 4/699 (0%)
Query: 28 SCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVS 87
SC ++ + + D S +++++ I+SL+ NL P+ L RVLD+T+D S AL+IF+WV
Sbjct: 4 SCPDSPSVRASADRASS---SEFDSAIRSLKDNLRPESLARVLDSTSDSSLALRIFRWVL 60
Query: 88 IQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRV 147
Q+ HT DTY MI +L N +EM+ L MV+ + P + +AL LV + +
Sbjct: 61 HQRYNIHTVDTYSCMISRLTAVENRDEMDSLLSEMVRLKVPALEQALNKLVECLSSKNQF 120
Query: 148 NGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY 207
+ + V+ +S KLSV N VL +V++ RG + + VY E+VKAG++P+VDTLN
Sbjct: 121 DEGLLVIQRASSAKLKLSVSACNGVLHGMVKQGRGLSLCMLVYTEIVKAGVLPDVDTLNL 180
Query: 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLG 267
L+E L E+ R++ AL QF RM KK C PNS TFE++I L ++SR D++V + +M L
Sbjct: 181 LIEALCESGRLDLALIQFGRMSKKRCTPNSHTFEVLITALCSHSRADEAVKLFDKMLQLR 240
Query: 268 IQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDAN 327
+ SF+ ++P+ C+ +K++EAI L +MM+ ++ Y LI CLCEN LDD
Sbjct: 241 CSPDSSFHAQVMPLFCKFSKVKEAITLHRMMKEDNIQLSMQLYSALIRCLCENQLLDDTT 300
Query: 328 DILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387
+ ++MI G P +VD++ C GKF +V FLE+ + P+NALL C
Sbjct: 301 IVFKEMIASGHAPMASTYVDMIHCYCTKGKFHSAVRFLEENDVTESEPYNALLSWLCRND 360
Query: 388 KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSA 447
+ + LEK+ +R DC+SWNI I C IR+A EL+GRMVVSS PD TYSA
Sbjct: 361 RLQDSVSCLEKLHNRGFVDCESWNIVITQFCNEGNIRRASELIGRMVVSSFAPDGTTYSA 420
Query: 448 FVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG 507
+ C+L Y DAL +FR+ S +L L+S S+S+LVE LC ++I EA+EVF G
Sbjct: 421 VISCYCRLGLYIDALNMFRRASISNLSLNSESFSQLVEVLCHAKRIEEAIEVFKYHYNRG 480
Query: 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLL 567
CSL++ S ++LI G C+ K+ +A++LR+LA +GTS T STY I+ L+ L++ KD+L
Sbjct: 481 CSLTNKSLDMLIQGSCMSGKIHEAVKLRTLAVCTGTSCTFSTYGIIIQALLHLKKGKDVL 540
Query: 568 VVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627
+ AQML+EGC LD AY IL++S + + + A+ FN MV PD+ET +++ +
Sbjct: 541 TLFAQMLMEGCPLDGYAYNILLRSFLTKETIIEAAILFNRMVNHSFFPDQETFELIVNDM 600
Query: 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687
A S L++V+ + K++ S + +YNI+I GL KEG S+A LD ML KGWVPD+
Sbjct: 601 ALFSFLNMVAQSLLKVIDTSGTVSPRIYNIIIYGLIKEGFKSEACKFLDQMLEKGWVPDS 660
Query: 688 TTHGLLVGSSVGEEIDSRRFAFDSSSFPDSVSDILAEGL 726
TH +LVGSS E A+ + D+V++IL E L
Sbjct: 661 RTHRVLVGSSGLVEARELVEAYQTVD-GDNVTNILLEAL 698
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414873332|tpg|DAA51889.1| TPA: hypothetical protein ZEAMMB73_948978 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/718 (39%), Positives = 431/718 (60%), Gaps = 10/718 (1%)
Query: 13 KIIKWVNLTSCISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSPDHLIRVLDN 72
+ +W L+ + SC ++ + + S +++++ I+SL+ +L P+ L R+LD+
Sbjct: 10 RFARWHLLSGRLMYCSCPDSPSARASAERASS---SEFDSAIRSLKDSLRPESLARILDS 66
Query: 73 TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVRE 132
T+D S AL+IF+W S Q+ T DTY MI +L + N +EM+ L MV+ R P + +
Sbjct: 67 TSDSSLALRIFRWASHQRYNIQTVDTYSCMISRLTVVENRDEMDSLLSEMVRLRVPALEQ 126
Query: 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKE 192
AL LV S + R + A+ V+ + S KLSV N VL +V + RG F+ Y E
Sbjct: 127 ALNKLVESLSSKNRCDEALLVIQHARSAKLKLSVSACNGVLHGMVRQGRGLRLFMLAYTE 186
Query: 193 MVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSR 252
++KAG++P+V+ LN+L++ L E+ R++ AL QF RM+KK C PNS TFEI+I L +SR
Sbjct: 187 IIKAGVLPDVEALNFLIQALCESGRLDLALIQFDRMNKKRCTPNSHTFEILITALCFHSR 246
Query: 253 VDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEE 312
D++V + +M L + SF+ ++P+ C+ +K++E I L ++M+ ++ Y
Sbjct: 247 ADEAVKLFDKMLQLRCSPDSSFHAQVMPLFCKFSKVKEVITLHRIMKEGNIQLSLQLYSA 306
Query: 313 LINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYV 372
L+ CLCEN LDDA + ++M+ G P +VD++ C KF ++ FLE+
Sbjct: 307 LVRCLCENELLDDATIVFKEMVASGHAPMAITYVDMINCYCTKSKFHNAMIFLEENGVTE 366
Query: 373 TSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGR 432
P+N LL C + + LEK+ R DC+SWNI I C IR+A+EL+GR
Sbjct: 367 LEPYNVLLTWLCRNDRLQDSVNYLEKLHSRGFVDCESWNIVITQFCNEGNIRRAFELIGR 426
Query: 433 MVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK 492
MVVSS PD TYSA + C+L +Y DAL +FR+VS ++ L+S S+S+LVE LC ++
Sbjct: 427 MVVSSFAPDKTTYSAVISCYCRLGSYIDALSMFRRVSISNMSLNSESFSQLVEVLCHSKR 486
Query: 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYS--SGTSYTTSTY 550
I EA+EVF GCSL++ S ++LI G C+ K+ +A++LR+LA S +GT T STY
Sbjct: 487 IKEAIEVFKYHYNRGCSLTNKSLDMLIQGSCLSGKIQEAVKLRTLAVSVCTGTFCTFSTY 546
Query: 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610
I+ L L+ K +L + AQML+EGC LD AY IL++S + + + A+ FN MV
Sbjct: 547 DIIIQALFHLKEGKHVLALFAQMLMEGCPLDGYAYNILLRSFLTKETIIEAAILFNRMVN 606
Query: 611 AGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670
PD+ET L++ +A S L++V+ + K+V S + MYNI+I GL KEG S+
Sbjct: 607 HSFFPDQETFELLVNDMALFSFLNMVAQSLLKVVDASGTVSPRMYNIIIYGLIKEGFKSE 666
Query: 671 ASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRF--AFDSSSFPDSVSDILAEGL 726
A LD ML KGWVPD+ TH +LVGSS + +++R A+ + D+V++IL EGL
Sbjct: 667 ACKFLDQMLEKGWVPDSRTHRVLVGSS--DLVEARELVEAYQTVD-GDNVANILLEGL 721
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297601813|ref|NP_001051548.2| Os03g0795400 [Oryza sativa Japonica Group] gi|222625958|gb|EEE60090.1| hypothetical protein OsJ_12941 [Oryza sativa Japonica Group] gi|255674962|dbj|BAF13462.2| Os03g0795400 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/680 (40%), Positives = 412/680 (60%), Gaps = 1/680 (0%)
Query: 47 TTDYEAKIQSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKL 106
++++++ I+SLR N P+ L +LD+ +D + AL+IF+W S Q+ HT DTY +MI KL
Sbjct: 49 SSEFDSAIRSLRINPQPERLAHILDSASDFNLALRIFRWASYQRMPIHTVDTYARMIAKL 108
Query: 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSV 166
G AGN +E+ G + MV+ P + + + LV R + A+ V+ + +SG FK+SV
Sbjct: 109 GDAGNHDEIGGFLKEMVRLDVPGLEKVMNDLVQFLSGKNRFDEALLVIQHASSGNFKISV 168
Query: 167 DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFR 226
N VL +V+E RG F+ Y E+VKAG++P+V+TLN+L+EVL E +E AL QF
Sbjct: 169 SSCNGVLCGLVKEGRGLRPFMRAYMEVVKAGVLPDVETLNWLIEVLCEAGHLELALVQFD 228
Query: 227 RMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286
+M KK C PNSRTF+I+I L ++ R D+S +M L + SF ++P+ C+ N
Sbjct: 229 KMSKKRCIPNSRTFKILITALCSHGRADESADAFDKMLQLRCIPDSSFCVQVLPLFCKFN 288
Query: 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFV 346
KL+EA +L +MM+ L D+ Y LI CLCEN LDDA + DMI G FV
Sbjct: 289 KLKEARKLHQMMKEYKLQSDQHLYSALIRCLCENQLLDDAVTTVNDMIASGHALMRSTFV 348
Query: 347 DIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIAD 406
+IV C +G+F ++VNFLE+ +N LL C G+ + L ++ R + +
Sbjct: 349 NIVDCYCTLGQFHKAVNFLEENDVAEIEAYNVLLRSLCKTGRVQDSVNYLTELHSRGLVN 408
Query: 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFR 466
C SWNI I C N IR+A EL+ RM+VSS D +TYS+ V CKL Y++AL +FR
Sbjct: 409 CQSWNIVIAQFCNNGNIRRASELICRMIVSSFTADESTYSSVVSCYCKLGLYKNALDMFR 468
Query: 467 QVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526
++ +L L+S S+S+LVE LC ++KI EA EVF K GC+L+S S +LI C++
Sbjct: 469 RLDVSNLSLNSESFSQLVESLCHMKKIQEAAEVFKYHCKRGCNLTSESLEMLIQESCMVG 528
Query: 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC 586
+ +AI++RSLA +GTS T +TY I L+ L++ KD+L++ A ML+EGC L+ Y
Sbjct: 529 MIREAIKMRSLAVCTGTSCTFTTYNTIFRALLHLKKEKDVLLLFAHMLMEGCLLNEYTYN 588
Query: 587 ILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646
+++ + + + A+ FN MVK G VPD+ET L+ +A S L+++S + +V+
Sbjct: 589 CILRYFLTKETIFEAAILFNRMVKDGFVPDQETFELLVPEMALSSLLNMISESLLTVVNM 648
Query: 647 SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRR 706
++ + NI+I GL KEG S+A LD M+ KGWVPD+ TH +L+ SS G E
Sbjct: 649 DGMMSPRISNIIIYGLIKEGFKSEACKFLDQMIEKGWVPDSRTHSILLSSS-GREEPRES 707
Query: 707 FAFDSSSFPDSVSDILAEGL 726
+ + D+VS+IL EGL
Sbjct: 708 DEVNHTVDDDNVSNILLEGL 727
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.880 | 0.879 | 0.248 | 4.6e-50 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.843 | 0.815 | 0.238 | 2.3e-45 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.829 | 0.692 | 0.249 | 7.7e-44 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.865 | 0.826 | 0.234 | 8.9e-44 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.825 | 0.955 | 0.241 | 1.8e-42 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.761 | 0.861 | 0.239 | 3.9e-41 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.854 | 0.680 | 0.235 | 5e-41 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.735 | 0.812 | 0.259 | 8.2e-41 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.685 | 0.788 | 0.260 | 9.6e-41 | |
| TAIR|locus:2095309 | 687 | AT3G09060 "AT3G09060" [Arabido | 0.865 | 0.918 | 0.237 | 1e-40 |
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 164/659 (24%), Positives = 304/659 (46%)
Query: 54 IQSLR---HNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAG 110
+ SLR H ++P L ++L+ ++S+++++F W Q ++H+ D Y +I KLG G
Sbjct: 66 LDSLRNSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANG 125
Query: 111 NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM-NSGGFKLSVDVF 169
+ ++ L M E IS++ + R+++ M N + + +
Sbjct: 126 EFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSY 185
Query: 170 NVVLGAIVEEK-RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228
NVVL +V A VF Y +M+ I P + T +++ N I+SAL R M
Sbjct: 186 NVVLEILVSGNCHKVAANVF-Y-DMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243
Query: 229 HKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKL 288
K GC PNS ++ +I L +RV++++ +L EMF +G + + +I LC+ +++
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRI 303
Query: 289 EEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDI 348
EA ++ M PD++TY L+N LC+ R+D A D+ + P +F +
Sbjct: 304 NEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTL 359
Query: 349 VRGLCEVGKFDESVNFLEDKC-GYVTSP----HNALLECCCNAGKFFLAKCILEKMADRK 403
+ G G+ D++ L D Y P +N+L+ G LA +L M ++
Sbjct: 360 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419
Query: 404 IA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDAL 462
+ S+ I + C+ +I +AY +L M + P+ ++ + CK +A+
Sbjct: 420 CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 479
Query: 463 RVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522
+FR++ + D +++ L+ GLC+V++I A+ + M G ++ ++N LI
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAF 539
Query: 523 CVMRKVDKAIRLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV 582
++ +A +L + ++ GL + + +ML +G A
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINK 642
+ ILI + +++ F MV G PD T SL++GL ++ + K
Sbjct: 600 ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRK 659
Query: 643 LVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701
L ++ D+ +N L++ L K G A LLD + G+VP+ T +L+ S + +E
Sbjct: 660 LQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 2.3e-45, P = 2.3e-45
Identities = 152/636 (23%), Positives = 286/636 (44%)
Query: 67 IRVLDNTN---DLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMV 123
+++LD+ D S+AL++F S + F Y +++L+LG +G+ ++M+ + ++M
Sbjct: 51 VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMK 110
Query: 124 KERYPNVREALISLVFSFVNHYRVNGAMRVLVNM-NSGGFKLSVDVFNVVLGAIVEEKRG 182
R + L+ S+ + + V+ M + G K +N +L +V+
Sbjct: 111 SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNS- 169
Query: 183 FADFVFV-YKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFE 241
V + + +M GI P+V T N L++ L +++ A+ M G P+ +TF
Sbjct: 170 -LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228
Query: 242 IVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRAL 301
V++G I +D ++ I +M + G I+ C+E ++E+A+ + M
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Query: 302 D-LMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDE 360
D PD+ T+ L+N LC+ + A +I++ M+ G P + ++ GLC++G+ E
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 361 SVNFLEDK----CGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIR 415
+V L+ C T +N L+ C + A + + + I D ++N I+
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408
Query: 416 WLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL 475
LC R A EL M PD TY+ + C ++AL + +Q+
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535
I+Y+ L++G C+ K EA E+F M +G S +S ++N LI GLC R+V+ A +L
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 536 SLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595
++ + K ++ M GC D+ Y LI + +
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Query: 596 NKLKDCA-LFFNVMVKA-GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL-DS 652
+++ + L ++ +K L P ++ GL + + +++ +E D+
Sbjct: 589 GRVEVASKLLRSIQMKGINLTPHAYN--PVIQGLFRKRKTTEAINLFREMLEQNEAPPDA 646
Query: 653 SMYNILINGLWKEG--LTSQASYLLDLMLGKGWVPD 686
Y I+ GL G + +L++L L KG+VP+
Sbjct: 647 VSYRIVFRGLCNGGGPIREAVDFLVEL-LEKGFVPE 681
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 7.7e-44, P = 7.7e-44
Identities = 162/649 (24%), Positives = 304/649 (46%)
Query: 69 VLDNTNDLSSALKIFKWV-SIQKRFQH--TAD---TYCKMILKLGLAGNVEEMEGLCQNM 122
+L NTN+ A +IFK + S H + D T +++++ + ++E+ L +
Sbjct: 9 LLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNLILSS 68
Query: 123 VKERYPNVREALISLVFSFVNHYRVNGAMRV--LVNMNSGGFKLSVDVFNVVLGAIVEEK 180
++ +L+S+V F ++ A LV K SV ++N++L + ++E+
Sbjct: 69 SIQK--TKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKER 126
Query: 181 RGFADFV-FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239
R +FV ++YK+MV GI P T N L+ L +++ +++A + F M +KGC PN T
Sbjct: 127 R--VEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFT 184
Query: 240 FEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299
F I+++G D + +L M G+ Y I+ CRE + +++ ++ + MR
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR 244
Query: 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIV---IGLTPTDDVFVDIV-RGLCEV 355
L+PD +T+ I+ LC+ ++ DA+ I DM + +GL + + +++ +G C+V
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304
Query: 356 GKFDESVNFLE-----DKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDS 409
G +++ E D + S +N L+ GKF A+ +L++M D+ I S
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQS-YNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYS 363
Query: 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVS 469
+NI + LC+ + A ++G M + V PD TY + G C + + A + +++
Sbjct: 364 YNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMM 423
Query: 470 AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD 529
+ + ++ + + L+ L ++ +I+EA E+ M++ G L + + NI++ GLC ++D
Sbjct: 424 RNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELD 483
Query: 530 KAIRLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589
KAI + +GLV D L+ C D+ Y L+
Sbjct: 484 KAIEIVK-GMRVHGSAALGNLGNSYIGLVD-----DSLIE------NNCLPDLITYSTLL 531
Query: 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649
+ + + + F M+ L PD +H + +SS +++ D E
Sbjct: 532 NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGK---ISSAF-RVLKDMEK 587
Query: 650 --LDSSM--YNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
S+ YN LI GL + + L+D M KG P+ T+ +
Sbjct: 588 KGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAI 636
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 8.9e-44, P = 8.9e-44
Identities = 151/643 (23%), Positives = 288/643 (44%)
Query: 61 LSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQ 120
L P H+ V+ D AL++F + + F+HT TY +I KLG G E ME +
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 121 NMVKERYPN--VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVE 178
+M +E N + + + ++ +V A+ V M+ + +V +N ++ +V+
Sbjct: 65 DM-RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD 123
Query: 179 EKRGFADFVF-VYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNS 237
G+ D VY M GI P+V + ++ +T+R +AL M +GC N
Sbjct: 124 S--GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNV 181
Query: 238 RTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKM 297
+ V+ G + + + G+M G+ L LS + ++ +LC++ ++E +L
Sbjct: 182 VAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDK 241
Query: 298 MRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGK 357
+ ++P+ TY I LC+ LD A ++ +I G P + +++ GLC+ K
Sbjct: 242 VIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSK 301
Query: 358 FDESVNFLEDKCGYVTSP----HNALLECCCNAGKFFLAKCIL-EKMADRKIADCDSWNI 412
F E+ +L P +N L+ C G LA+ I+ + + + + D ++
Sbjct: 302 FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361
Query: 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS 472
I LC E +A L + + P+ Y+ + G +A ++ ++S +
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 473 LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAI 532
L+ + +++ LV GLC++ +++A + M G +FNILI+G K++ A+
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481
Query: 533 RLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSM 592
+ + ++ GL K + +D++ M+ +GCA ++ + IL++S+
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 593 SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652
KL + M + PD T +L+ G L + K+ +V S
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSS 601
Query: 653 S-MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
+ YNI+I+ ++ + A L M+ + PD T+ L+V
Sbjct: 602 TPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMV 644
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.8e-42, P = 1.8e-42
Identities = 150/621 (24%), Positives = 294/621 (47%)
Query: 81 KIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFS 140
++F S RF H + +L G G C V++ + VR + +
Sbjct: 3 RLFAISSTGNRFVH------RSLLGKGKCGTAPPSFSHCSFWVRD-FSGVRYDYRKISIN 55
Query: 141 FVNHYRVNGAMRVLVNM-NSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIV 199
+N +++ A+ + +M S F V+ F+ +L AI + + F + + ++M GI
Sbjct: 56 RLNDLKLDDAVNLFGDMVKSRPFPSIVE-FSKLLSAIAKMNK-FDLVISLGEQMQNLGIS 113
Query: 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSI 259
N+ T + L+ +++ AL +M K G P+ T ++ G +R+ D+VS+
Sbjct: 114 HNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSL 173
Query: 260 LGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCE 319
+G+M ++G Q + + +I L R N+ EA+ L M PD +TY ++N LC+
Sbjct: 174 VGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK 233
Query: 320 NLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVN-FLE-DKCGYVTS--P 375
+D A +L+ M + P ++ I+ LC ++++N F E D G +
Sbjct: 234 RGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293
Query: 376 HNALLECCCNAGKFFLAKCILEKMADRKI-ADCDSWNIPIRWLCENEEIRKAYELLGRMV 434
+N+L+ C CN G++ A +L M +RKI + +++ I + ++ +A +L M+
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353
Query: 435 VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKIT 494
S+ PD TYS+ + G C ++A +F + ++ + ++Y+ L++G C+ +++
Sbjct: 354 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVD 413
Query: 495 EAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKA-IRLRSLAXXXXXXXXXXXXXKI 553
E +E+F MS+ G ++ ++ LI+G R+ D A I + + +
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI-L 472
Query: 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD-CALFFNVMVKAG 612
+ GL + + LVV + D+ Y I+I+ M + K++D LF ++ +K G
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-G 531
Query: 613 LVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672
+ P+ T +++ G + ++ + + DS YN LI ++G + ++
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591
Query: 673 YLLDLMLGKGWVPDATTHGLL 693
L+ M +V DA+T GL+
Sbjct: 592 ELIREMRSCRFVGDASTIGLV 612
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 3.9e-41, P = 3.9e-41
Identities = 136/568 (23%), Positives = 254/568 (44%)
Query: 104 LKLGLAG-NVEEMEGLCQNMVKER-YPNVREALISLVFSFVNHYRVNGAMRVLVN-MNSG 160
L GL G ++ L ++M++ R P V + + +FS + + + L M S
Sbjct: 60 LSSGLVGIKADDAVDLFRDMIQSRPLPTVID--FNRLFSAIAKTKQYELVLALCKQMESK 117
Query: 161 GFKLSVDVFNVVLGAIVE-EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIE 219
G S+ ++++ K +A F + K M K G P+ N LL L R+
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYA-FSTMGKIM-KLGYEPDTVIFNTLLNGLCLECRVS 175
Query: 220 SALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCII 279
AL+ RM + G P T ++ GL N +V D+V ++ M + G Q Y ++
Sbjct: 176 EALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVL 235
Query: 280 PMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLT 339
++C+ + A+ L + M ++ D + Y +I+ LC++ LD+A ++ +M + G
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK 295
Query: 340 PTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPH----NALLECCCNAGKFFLAKCI 395
+ ++ G C G++D+ L D SP+ + L++ GK A +
Sbjct: 296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355
Query: 396 LEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454
L++M R IA + ++N I C+ + +A +++ M+ PD T++ + G CK
Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCK 415
Query: 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS 514
+D L +FR++S + ++ ++++Y+ LV+G CQ K+ A ++F M S
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 515 FNILIYGLCVMRKVDKAIRLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQML 574
+ IL+ GLC +++KA+ + I+ G+ + D + +
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 575 VEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH 634
++G LD AY I+I + ++ L + F M + G PD T L+
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595
Query: 635 LVSSGINKLVSDSEVLDSSMYNILINGL 662
+ I ++ S D S ++IN L
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVINML 623
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 5.0e-41, P = 5.0e-41
Identities = 151/642 (23%), Positives = 287/642 (44%)
Query: 54 IQSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVE 113
++S+ +SP H+ + D +AL W+S R++H+ +Y ++ L G V
Sbjct: 81 LKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVG 140
Query: 114 EMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173
+ + M+K +V +AL L ++N R + +KL + +N +L
Sbjct: 141 VVFKIRLLMIKS-CDSVGDALYVLDLC----RKMNKDERFELK-----YKLIIGCYNTLL 190
Query: 174 GAIVEEKRGFADFVF-VYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKG 232
++ + G D + VY EM++ + PN+ T N ++ + +E A ++ + G
Sbjct: 191 NSLA--RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 233 CCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAI 292
P+ T+ +I G +D + + EM G + YT +I LC +++EA+
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 293 RLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGL 352
LF M+ + P TY LI LC + R +A +++++M G+ P + ++ L
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Query: 353 CEVGKFDESVNFLEDKCGYVTSP----HNALLECCCNAGKFFLAKCILEKMADRKIA-DC 407
C KF+++ L P +NAL+ C G A ++E M RK++ +
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNT 428
Query: 408 DSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQ 467
++N I+ C++ + KA +L +M+ V+PD TY++ + G+C+ N++ A R+
Sbjct: 429 RTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 468 VSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK 527
++ + LV D +Y+ +++ LC+ +++ EA ++F + + G + + + LI G C K
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 528 VDKAIRLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCI 587
VD+A + ++ GL + K+ ++ +M+ G V I
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607
Query: 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS 647
LI + + F M+ +G PD T + + +L + K+ +
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 648 EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689
D Y+ LI G G T+ A +L M G P T
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.2e-41, P = 8.2e-41
Identities = 145/558 (25%), Positives = 262/558 (46%)
Query: 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLC 119
++SP+ + V++N + + K+FK F+ T MI +G+ + +E L
Sbjct: 41 SVSPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLL 100
Query: 120 QNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM-NSGGFKLSVDVFNVVLGAIVE 178
+ E + + I + ++ + + A+ + M + K SV FN VL I+
Sbjct: 101 SRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIIN 160
Query: 179 E---KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP 235
E RG + +V + I PN + N +++ L + ++ A++ FR M ++ C P
Sbjct: 161 EGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLP 220
Query: 236 NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLF 295
+ T+ ++ GL R+D++V +L EM G Y +I LC++ L +L
Sbjct: 221 DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLV 280
Query: 296 KMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV 355
M +P+E+TY LI+ LC +LD A +LE M+ P D + ++ GL +
Sbjct: 281 DNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQ 340
Query: 356 GKFDESVNFLE--DKCGYVTSPH--NALLECCCNAGKFFLAKCILEKMADRKIA-DCDSW 410
+ ++V L ++ GY + H + L+ GK A + KMA++ + +
Sbjct: 341 RRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVY 400
Query: 411 NIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLG--KCKLCNYEDALRVFRQV 468
++ + LC + +A E+L RM+ S +P+ TYS+ + G K LC E+A++V++++
Sbjct: 401 SVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLC--EEAVQVWKEM 458
Query: 469 SAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV 528
+ YS L++GLC V ++ EA+ V+ M G + +++ +I GLC + +
Sbjct: 459 DKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSM 518
Query: 529 DKAIRL--RSLAXXXXXXXXXXXXXKIML-GLVK---LQRAKDLLVVLAQMLVEGCALDV 582
D A++L L I+L GL + RA DLL ML GC DV
Sbjct: 519 DAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLL---NSMLDRGCDPDV 575
Query: 583 EAYCILIQSMSEQNKLKD 600
+ ++SE++ D
Sbjct: 576 ITCNTFLNTLSEKSNSCD 593
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 133/510 (26%), Positives = 234/510 (45%)
Query: 137 LVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196
L+ F +++ A+ +L M G++ S+ + +L KR +D V + +MV+
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR-ISDAVALVDQMVEM 184
Query: 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256
G P+ T L+ LF N+ A+ RM ++GC PN T+ +V+ GL D +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 257 VSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINC 316
+++L +M I+ ++ + II LC+ +++A+ LFK M + P+ +TY LI+C
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 317 LCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSP- 375
LC R DA+ +L DMI + P F ++ + GKF E+ +D P
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 376 ---HNALLECCCNAGKFFLAKCILEKMADRK-IADCDSWNIPIRWLCENEEIRKAYELLG 431
+N+L+ C + AK + E M + D ++N I+ C+++ + EL
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424
Query: 432 RMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491
M +V D TY+ + G + ++A +VF+Q+ + + D ++YS L++GLC
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484
Query: 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAXXXXXXXXXXXXX 551
K+ +A+EVF M K+ L + +I G+C KVD L
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544
Query: 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611
++ GL + ++ +L +M +G + Y LI++ A M
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSC 604
Query: 612 GLVPDRETM---LSLLH-GLADGSQLHLVS 637
V D T+ ++LH G D S L ++S
Sbjct: 605 RFVGDASTIGLVANMLHDGRLDKSFLDMLS 634
|
|
| TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 1.0e-40, P = 1.0e-40
Identities = 153/644 (23%), Positives = 296/644 (45%)
Query: 60 NLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLC 119
+LSP H++++L + + +A +F + + H+A Y ++ +L V + +
Sbjct: 7 SLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIV 66
Query: 120 QNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNS-GGFKLSVDVFNVVLGAIVE 178
+ + + + +S++ ++ + + A+ V M G + ++ +N +L A VE
Sbjct: 67 ELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVE 126
Query: 179 EKRGF-ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNS 237
K+ + +F Y E AG+ PN+ T N L+++ + E A M K+G P+
Sbjct: 127 AKQWVKVESLFAYFET--AGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDV 184
Query: 238 RTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLF-K 296
++ VI L ++DD++ + EM + G+ +++ Y +I +E + A+ L+ +
Sbjct: 185 FSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDR 244
Query: 297 MMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356
++ + P+ T+ +I+ L + R+DD I E M + ++ GLC+ G
Sbjct: 245 LLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAG 304
Query: 357 KFD--ESV-NFLED-KCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNI 412
D ESV N L++ K +N +L C GK + + M + + S+NI
Sbjct: 305 NVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNI 364
Query: 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS 472
I+ L EN +I +A + M D TY F+ G C AL V ++V +
Sbjct: 365 LIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSG 424
Query: 473 LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKA- 531
LD +Y+ +++ LC+ +++ EA + MSK+G L+S N LI GL ++ +A
Sbjct: 425 GHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEAS 484
Query: 532 IRLRSLAXXXXXXXXXXXXXKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591
LR + ++ GL K + + + +ML G D++ Y IL+
Sbjct: 485 FFLREMGKNGCRPTVVSYNI-LICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCG 543
Query: 592 MSEQNKLKDCAL-FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650
+ K+ D AL ++ +++GL D L+HGL +L + + + +
Sbjct: 544 LCRDRKI-DLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTA 602
Query: 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
+ YN L+ G +K G +++A+ + M G PD ++ ++
Sbjct: 603 NLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIM 646
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 19/354 (5%)
Query: 147 VNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVF-VYKEMVKAGIVPNVDTL 205
++GA+RVL + G K ++ ++ K G D +F V+ EMV AG+ NV T
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCA--KSGKVDAMFEVFHEMVNAGVEANVHTF 510
Query: 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265
L++ ++ A + M K P+ F +I + VD + +L EM
Sbjct: 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 266 LG--IQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRL 323
I + ++ +++ A +++M+ ++ Y +N +
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 324 DDANDILEDMIVIGLTPTDDVF----VDIVRGLCEVGKFDESVNFLED--KCGYV--TSP 375
D A I +DM G+ P D+VF VD V G G D++ L+D K G T
Sbjct: 631 DFALSIYDDMKKKGVKP-DEVFFSALVD-VAG--HAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 376 HNALLECCCNAGKFFLAKCILEKMADRKIADCDS-WNIPIRWLCENEEIRKAYELLGRMV 434
+++L+ C NA + A + E + K+ S N I LCE ++ KA E+L M
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 435 VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC 488
+ P+ TYS ++ + + + L + Q + + + + GLC
Sbjct: 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 84/408 (20%), Positives = 165/408 (40%), Gaps = 35/408 (8%)
Query: 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVS 258
P + T N L+ V + I+ AL R + + G + + + +I + +VD
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 259 ILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318
+ EM + G++ + + +I R ++ +A + +MR+ ++ PD + + LI+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 319 ENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNA 378
++ +D A D+L +M E+ D A
Sbjct: 554 QSGAVDRAFDVLAEMKA------------------------ETHPIDPDHITV-----GA 584
Query: 379 LLECCCNAGKFFLAKCILEKMADRKIADC-DSWNIPIRWLCENEEIRKAYELLGRMVVSS 437
L++ C NAG+ AK + + + + I + + I + + + A + M
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 438 VVPDCATYSAFV--LGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITE 495
V PD +SA V G + A + + Q + L ++SYS L+ + +
Sbjct: 645 VKPDEVFFSALVDVAGHAGDL--DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 496 AVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555
A+E++ + + S+ N LI LC ++ KA+ + S G T TY+ +++
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCAL 603
+ A L +L+Q +G ++ C I + + K CAL
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNL-VMCRCITGLCLRRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 8e-09
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 275 YTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318
Y +I C++ K+EEA++LF M+ + P+ TY LI+ LC
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC 523
D ++Y+ L++G C+ K+ EA+++F M K G + +++ILI GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGL 247
P+V T N L++ + ++E AL F M K+G PN T+ I+I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 120/567 (21%), Positives = 219/567 (38%), Gaps = 73/567 (12%)
Query: 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGF 162
+ L G +E+ L ++M + R P +A ++L V RV S
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 163 KLSVDVFNVVLGAIVEEKRGFADFV---FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIE 219
L V + N +L V F + V +V+ +M + ++ + N L+ + +
Sbjct: 118 SLGVRLGNAMLSMFVR----FGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFD 169
Query: 220 SALDQFRRMHKKGCCPNSRTFEIVIK--GLIANSRVDDSVSILGEMFDLGIQLELSFYTC 277
AL + RM G P+ TF V++ G I + V + G +L++
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA--HVVRFGFELDVDVVNA 227
Query: 278 IIPMLCRENKLEEAIRLFKMMRALDLMP--DELTYEELINCLCENLRLDDANDILEDMIV 335
+I M + + A +F D MP D +++ +I+ EN + ++ M
Sbjct: 228 LITMYVKCGDVVSARLVF------DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 336 IGLTPTDDVFVDIVRGLCEV---GKFDESVNFLEDKCGYVT--SPHNALLECCCNAGKFF 390
+ + P D + + V CE+ + ++ K G+ S N+L++ + G +
Sbjct: 282 LSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 391 LAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVL 450
A+ + +M + D SW I +N KA E M +V PD T ++ VL
Sbjct: 341 EAEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS-VL 396
Query: 451 GKCK-LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK---- 505
C L + + +++ + L+ + + L+E + + I +A+EVF + +
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
Query: 506 ------NGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559
G L++ F LI+ R++ ++ S+ + S +M G K
Sbjct: 457 SWTSIIAGLRLNNRCFEALIF----FRQMLLTLKPNSVTLIAALSACARI-GALMCG--K 509
Query: 560 LQRAK-----------------DLLVVLAQMLV-----EGCALDVEAYCILIQSMSEQNK 597
A DL V +M DV ++ IL+ K
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569
Query: 598 LKDCALFFNVMVKAGLVPDRETMLSLL 624
FN MV++G+ PD T +SLL
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 409 SWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454
++N I C+ ++ +A +L M + P+ TYS + G CK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 119/550 (21%), Positives = 197/550 (35%), Gaps = 131/550 (23%)
Query: 234 CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIR 293
C R E +G SR S LG + L ++ M R +L A
Sbjct: 96 CEWKRAVE---EGSRVCSRALSSHPSLG--------VRLG--NAMLSMFVRFGELVHAWY 142
Query: 294 LFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFV------- 346
+F M DL ++ L+ + D+A + M+ G+ P DV+
Sbjct: 143 VFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP--DVYTFPCVLRT 196
Query: 347 -----DIVRGLCEVGK------FDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCI 395
D+ RG EV F+ V+ + NAL+ G A+ +
Sbjct: 197 CGGIPDLARGR-EVHAHVVRFGFELDVDVV-----------NALITMYVKCGDVVSARLV 244
Query: 396 LEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL 455
++M R DC SWN I EN E + EL M SV PD T ++ V+ C+L
Sbjct: 245 FDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS-VISACEL 300
Query: 456 -------------------------CN-----------YEDALRVFRQVSAQSLVLDSIS 479
CN + +A +VF ++ + D++S
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVS 356
Query: 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY 539
++ ++ G + +A+E + M ++ S + ++ + +D ++L LA
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 540 SSG-TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL 598
G SY I + K + L V + + DV ++ +I + N+
Sbjct: 417 RKGLISYVVVANALIEM-YSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRC 471
Query: 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL--------HLVSSGI-------NKL 643
+ +FF M L P+ T+++ L A L H++ +GI N L
Sbjct: 472 FEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530
Query: 644 VS---------------DSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688
+ +S D +NIL+ G G S A L + M+ G PD
Sbjct: 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 689 TH-GLLVGSS 697
T LL S
Sbjct: 591 TFISLLCACS 600
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 146 RVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTL 205
++ A +L + G KL ++ ++GA K + + +Y+++ + P V T+
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPTVSTM 722
Query: 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265
N L+ L E N++ AL+ M + G CPN+ T+ I++ D + +L + +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 266 LGIQLELSFYTCIIPMLCR 284
GI+ L CI + R
Sbjct: 783 DGIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 305 PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353
PD +TY LI+ C+ ++++A + +M G+ P + ++ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629
DV Y LI ++ K+++ FN M K G+ P+ T L+ GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 65/345 (18%), Positives = 132/345 (38%), Gaps = 56/345 (16%)
Query: 149 GAMRVLVNMNSGGFKLSVDVFNVVL------GAIVEEKRGFADFVFVYKEMVKAGIVPNV 202
V ++ S GF+ + N VL G +++ +R ++ EM + +
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR-------LFDEMPERNLA--- 190
Query: 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGE 262
+ ++ L + A FR M + G RTF ++++ + + LG
Sbjct: 191 -SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR----------ASAGLGS 239
Query: 263 MFDLGIQLEL----------SFYTC-IIPMLCRENKLEEAIRLFKMMRALDLMPDELT-- 309
G QL +F +C +I M + +E+A +F D MP++ T
Sbjct: 240 AR-AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF------DGMPEKTTVA 292
Query: 310 YEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDES----VNFL 365
+ ++ + ++A + +M G++ F ++R + + + +
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 366 EDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRK 425
+ AL++ G+ A+ + ++M + + SWN I + K
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI---SWNALIAGYGNHGRGTK 409
Query: 426 AYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY-EDALRVFRQVS 469
A E+ RM+ V P+ T+ A VL C+ E +F+ +S
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLA-VLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
D YN LI+G K+G +A L + M +G P+ T+ +L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 103/489 (21%), Positives = 182/489 (37%), Gaps = 62/489 (12%)
Query: 161 GFKLSVDVFNVVL------GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE 214
GF+L VDV N ++ G +V + V+ M + + + N ++ FE
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARL-------VFDRMPRRDCI----SWNAMISGYFE 265
Query: 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIK--GLIANSRVDDSVSILGEMFDLGIQLEL 272
L+ F M + P+ T VI L+ + R+ + G + G +++
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL--GREMHGYVVKTGFAVDV 323
Query: 273 SFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILED 332
S +I M EA ++F M D + ++ +I+ +N D A +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYAL 379
Query: 333 MIVIGLTPTDDVFVDIVRGLCE-VGKFDESVNF--LEDKCG---YVTSPHNALLE----C 382
M ++P D++ + V C +G D V L ++ G YV NAL+E C
Sbjct: 380 MEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA-NALIEMYSKC 437
Query: 383 CCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC 442
C + I EK D SW I L N +A +M++ ++ P+
Sbjct: 438 KCIDKALEVFHNIPEK-------DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489
Query: 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSL----VLDSISYSKLVEGLCQVEKITEAVE 498
T A L C AL +++ A L D + L++ + ++ A
Sbjct: 490 VTLIA-ALSACARIG---ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
Query: 499 VFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558
F K+ S+NIL+ G K A+ L + SG + T+ ++
Sbjct: 546 QFNSHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
Query: 559 KLQRAKDLLVVLAQMLVE-GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR 617
+ L M + +++ Y ++ + KL + F N M + PD
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDP 657
Query: 618 ETMLSLLHG 626
+LL+
Sbjct: 658 AVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 9e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 275 YTCIIPMLCRENKLEEAIRLFKMMRALDLMPDE 307
Y +I LC+ ++EEA+ LFK M+ + PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.002
Identities = 42/258 (16%), Positives = 92/258 (35%), Gaps = 8/258 (3%)
Query: 183 FADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK-GCCPNSRTFE 241
+ + E + + + L L +L + AL+ + +
Sbjct: 4 LLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL 63
Query: 242 IVIKGLIANSRVDDSVSILGEMFDLGIQLELSF-YTCIIPMLCRENKLEEAIRLFKMMRA 300
++ L+ R+++++ +L + +L + L+ + +L K EEA+ L + A
Sbjct: 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123
Query: 301 LDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRG--LCEVGKF 358
LD PD + L E ++A ++ E + + + + G L +G++
Sbjct: 124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY 183
Query: 359 DESVNF----LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPI 414
+E++ L+ L GK+ A EK + + ++
Sbjct: 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA 243
Query: 415 RWLCENEEIRKAYELLGR 432
L E +A E L +
Sbjct: 244 LLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 231 KGCCPNSRTFEIVIKGLIANSRVDDSVSILGEM 263
KG P+ T+ +I GL RVD++V +L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489
PD TY+ + G CK E+AL++F ++ + + + +YS L++GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 302 DLMPDELTYEELINCLCENLRLDDANDILEDM 333
L PD +TY LI+ LC R+D+A ++L++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 275 YTCIIPMLCRENKLEEAIRLFKMMR 299
Y +I LCR +++EA+ L M
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.37 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.77 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.14 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.69 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.34 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.31 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.04 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.88 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.87 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.58 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.23 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.36 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.27 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.98 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.68 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.16 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.09 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.95 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.9 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.66 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.6 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.52 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.08 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.73 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.65 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.95 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.9 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.83 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.58 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.4 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.3 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.82 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.94 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.74 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.24 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.08 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.81 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.72 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.65 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.62 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.46 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.91 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.64 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.6 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.92 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.77 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.67 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.64 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.59 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.51 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.29 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.21 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.54 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.33 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.93 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.72 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.43 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.31 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.27 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 80.56 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.55 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.23 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.2 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-81 Score=698.37 Aligned_cols=651 Identities=16% Similarity=0.145 Sum_probs=615.0
Q ss_pred hhcCCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 55 QSLRHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREAL 134 (729)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (729)
...++......++..+.+.|+++.|+.+|+.+... +.+|+..+|..++..+.+.+.++.+..++..+.+.+..++...+
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 33445566778899999999999999999998664 57899999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 135 ISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE 214 (729)
Q Consensus 135 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 214 (729)
+.++..|++.|+++.|.++|++|. .||..+|+.+|.++++. |++++|..+|++|...|+.||..||+.++.+|+.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~-g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA-GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 999999999999999999999995 57899999999999999 9999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.+++..+.+++..|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+ +|..+||++|.+|++.|++++|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7899999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.+...+..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 453 (729)
+|+.++.+|++.|++++|.++|++|.+.|+. |..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 454 KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999875 5888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 534 LRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGL 613 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 613 (729)
++..+.+.|+.++..++++|+.+|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 67999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLV-SDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGL 692 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 692 (729)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. ++||..+|++
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 56999999999999999999999999999999994 7999999999
Q ss_pred HHhhhhhcchhhhhhhccc---cCCCCc--hHHHHhccccC
Q 004813 693 LVGSSVGEEIDSRRFAFDS---SSFPDS--VSDILAEGLGN 728 (729)
Q Consensus 693 ll~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~ 728 (729)
|+++|...++.+.++.... ...|+. .+..|.+.|+.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 9999998888775543211 123333 36677777753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=671.38 Aligned_cols=597 Identities=17% Similarity=0.178 Sum_probs=569.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 64 DHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN 143 (729)
Q Consensus 64 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (729)
+.++..+.+.|+++.|+++|+.+. .++..+|+.++..|++.|++++|..+|++|...|+.|+..+|+.++.+|+.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 456777788999999999999984 467889999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 144 HYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALD 223 (729)
Q Consensus 144 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 223 (729)
.+++..+.+++..+.+.|+.|+..+++.++.+|++. |+++.|..+|++|. .||..+||++|.+|++.|++++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999 99999999999997 5799999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 224 QFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL 303 (729)
Q Consensus 224 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 303 (729)
+|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|..
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 351 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--- 351 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhc----CCCCCCchHH
Q 004813 304 MPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKC----GYVTSPHNAL 379 (729)
Q Consensus 304 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~l 379 (729)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.+. ..+..++++|
T Consensus 352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988643 3455578999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
+++|++.|++++|.++|++|.+. +..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999876 788999999999999999999999999986 58999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY 539 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 539 (729)
.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 540 SSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQML-VEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 540 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +.||..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~ 658 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA 658 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence 99999999999999999999999999999999999 57999999999999999999999999999999984 789999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+|++|+.+|...|+.+.+....+++.+. .+.+...|..|.+.|...|+|++|.++.+.|++.|++++.
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999987 4667778889999999999999999999999999998765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=604.13 Aligned_cols=523 Identities=20% Similarity=0.278 Sum_probs=401.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGF-KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLN 206 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 206 (729)
.++...|..++..|++.|++++|.++|++|.+.|+ .++...++.++..|.+. |..++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566677777777777777777777777776664 35566666677777777 777777777777753 6777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV--IGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy------------------- 582 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV------------------- 582 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH-------------------
Confidence 7777777777777777777777777777777777777777777777765 4667777777
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCA 443 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 443 (729)
++++.+|++.|++++|.++|+.|.+.++. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 583 ------------naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 583 ------------GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred ------------HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 67777777777777777777777777766 67777777777777777777777777777777777777
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC 523 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (729)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------
Q 004813 524 VMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE--------- 594 (729)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------- 594 (729)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~ 810 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777654321
Q ss_pred --------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 595 --------------QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 595 --------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
.+..+.|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.+...+..|+..+|+++++
T Consensus 811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~ 890 (1060)
T PLN03218 811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD 890 (1060)
T ss_pred hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence 122467999999999999999999999999999899999999999999988888999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 661 GLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
++.+. .++|..++++|...|+.|+..
T Consensus 891 g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 98432 368999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-70 Score=592.25 Aligned_cols=522 Identities=15% Similarity=0.223 Sum_probs=395.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERY-PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
++...|..++..+++.|++++|.++|++|.+.++ +++...+..++..|.+.|.+++|.++|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4455666666777777777777777777777764 34555566677777777777777777777743 777777777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSR 252 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 252 (729)
+.+|++. |+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~-g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASS-QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 7777777 777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 004813 253 VDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA--LDLMPDELTYEELINCLCENLRLDDANDIL 330 (729)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 330 (729)
+++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 456777777777777777777777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cccc
Q 004813 331 EDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDS 409 (729)
Q Consensus 331 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 409 (729)
++|.+.|+.|+..+| +.+|.+|++.|++++|.++|++|...|+. |..+
T Consensus 603 ~~M~e~gi~p~~~ty-------------------------------nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 603 QMIHEYNIKGTPEVY-------------------------------TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred HHHHHcCCCCChHHH-------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 777777777777777 66666677777777777777777776666 6667
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 410 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----------
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK---------- 559 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 559 (729)
.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777777777777777777777777777777777777777777777777777776654321
Q ss_pred -------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 560 -------------LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 560 -------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
.+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++++.+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 1224679999999999999999999999998888999999999999999888889999999999999
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSS 653 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 653 (729)
+++. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8543 478999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=548.37 Aligned_cols=510 Identities=15% Similarity=0.183 Sum_probs=377.1
Q ss_pred CHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 62 SPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSF 141 (729)
Q Consensus 62 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (729)
+...++..+.+.|++++|+++|+++....++.|+..+|+.++.++.+.++++.+.+++..|.+.|+.|+..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666666666666665554455666666666666666666666666666666666666666666666666
Q ss_pred HhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 142 VNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESA 221 (729)
Q Consensus 142 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A 221 (729)
++.|+++.|.++|++|. .||..+|+.++.+|++. |++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 66666666666666663 35666666666666666 66666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 222 LDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 222 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (729)
.+++..+.+.|+.||..+|+.||.+|++.|++++|.++|+.|.+ +|..+||++|.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666643 46666666666666666666666666666666
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHH
Q 004813 302 DLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLE 381 (729)
Q Consensus 302 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~ 381 (729)
|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..++ ++|++
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~-------------------------------~~Li~ 368 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN-------------------------------TALVD 368 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh-------------------------------HHHHH
Confidence 66666666666666666666666666666666666666666666 99999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHH
Q 004813 382 CCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDA 461 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 461 (729)
+|++.|++++|.++|++|.+. |..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999998765 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 462 LRVFRQVSA-QSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 462 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 999999976 689999999999999999999999999998876 4579999999999999999999999999999876
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH---HHHH--------hcCCHHHHHHHHHHH
Q 004813 541 SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILI---QSMS--------EQNKLKDCALFFNVM 608 (729)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~---~~~~--------~~~~~~~A~~~~~~~ 608 (729)
.+ +.+..+|..|++.|++.|++++|.+++++|.+.|+... ..+|..+- ..+. ...-++...++..+|
T Consensus 523 ~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 523 MG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred CC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 54 23567899999999999999999999999999987532 22221110 0000 001134566777888
Q ss_pred HHCCCCCCHH
Q 004813 609 VKAGLVPDRE 618 (729)
Q Consensus 609 ~~~~~~p~~~ 618 (729)
.+.|+.||..
T Consensus 602 ~~~gy~~~~~ 611 (697)
T PLN03081 602 SEYGYVAEEN 611 (697)
T ss_pred HHcCCCCCcc
Confidence 8889888854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=547.41 Aligned_cols=475 Identities=16% Similarity=0.160 Sum_probs=418.1
Q ss_pred ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004813 164 LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAG-IVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI 242 (729)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 242 (729)
.+...|+.++..+.+. |++++|.++|+.|...+ ..||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3445667777777776 77777777777776543 567777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 243 VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
++.+|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 77777777777777777777753 67788888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR 402 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 402 (729)
.+.+.+++..+.+.|+.||..++ ++|+++|++.|++++|.++|++|...
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~-------------------------------n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVS-------------------------------CALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeH-------------------------------HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 88888888888888888888888 88888888888888888888888655
Q ss_pred CCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 403 KIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK 482 (729)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (729)
+..+||.++.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.
T Consensus 289 ---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 289 ---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred ---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
|+++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999964 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 563 AKDLLVVLAQMLV-EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 563 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|..+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999987 599999999999999999999999999998876 588999999999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
++.+. .+.+..+|..|++.|++.|+|++|.+++++|.+.|+++
T Consensus 519 ~l~~~-~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 519 KLYGM-GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHhCC-CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99876 34467899999999999999999999999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=350.41 Aligned_cols=618 Identities=13% Similarity=0.045 Sum_probs=436.2
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..|+++.|+..|+.+.+.. +.....+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.
T Consensus 273 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555544332 1112233333444555566666666666555543 344555555666666666666666
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..++.+.... +.+...+..+...+.+. |++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.
T Consensus 350 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 350 ATLSPALGLD-PDDPAALSLLGEAYLAL-GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 6666665443 33455556666666666 66666666666666543 224555556666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYE 311 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 311 (729)
... +......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.|+++.+... .+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHH
Confidence 211 22344455566667777777777777776532 34566777777778888888888888877776542 3455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCC
Q 004813 312 ELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGK 388 (729)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~ 388 (729)
.+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|+.++|...++..... +...+..+...|.+.|+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 67777778888888888888877653 235566777777777888888888887764333 33345667778888888
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQV 468 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 468 (729)
+++|..+++++....+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|..+++.+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888877666677788888888888888888888888887654 235566777778888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004813 469 SAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS 548 (729)
Q Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 548 (729)
.+.... +...+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+ |+..
T Consensus 662 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 776433 57778888888888888888888888887764 4566777778888888888888888888888764 4446
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
++..+..++.+.|++++|.+.++++.+..+. +...+..+...|...|++++|.+.|+++.+.. +.+...++.+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 6777888888888888888888888877543 67788888888888899999999998888763 346778888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFA 708 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 708 (729)
..|+ .+|+.+++++.+. .+.++..+..++..+...|++++|.++++++.+.+. .+..++..+..++.+.|..+.|..
T Consensus 816 ~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888 7788888888876 455677788888888899999999999999988653 377888888888888888887765
Q ss_pred c
Q 004813 709 F 709 (729)
Q Consensus 709 ~ 709 (729)
.
T Consensus 893 ~ 893 (899)
T TIGR02917 893 E 893 (899)
T ss_pred H
Confidence 4
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=345.67 Aligned_cols=620 Identities=12% Similarity=0.017 Sum_probs=371.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 65 HLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNH 144 (729)
Q Consensus 65 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (729)
.+..++...|+++.|.+.++.+.... +.+...+..+...+...|++++|...|+...+.+ +.+..++..++..+...
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEA 240 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 35555667777777777777776543 4556667777777777777777777777776665 45666677777777777
Q ss_pred CChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--------------------------
Q 004813 145 YRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI-------------------------- 198 (729)
Q Consensus 145 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~-------------------------- 198 (729)
|++++|...++.+.+... .+...+......+... |++++|...|+++.+.+.
T Consensus 241 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 318 (899)
T TIGR02917 241 GEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318 (899)
T ss_pred CCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776655421 1111111112222233 444444444444443321
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004813 199 -------VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE 271 (729)
Q Consensus 199 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 271 (729)
+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+
T Consensus 319 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 396 (899)
T TIGR02917 319 NQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-EN 396 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 1233344444555555555555555555554432 22444555555566666666666666666554322 23
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 272 LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRG 351 (729)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 351 (729)
...+..+...+...|++++|.+.|+.+.+.+. .+......++..+.+.|++++|..+++++... .+++..++..+...
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 44455555555555566666555555554332 12223344455555666666666666665543 23445566666677
Q ss_pred HHccCChHHHHHHHHhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHH
Q 004813 352 LCEVGKFDESVNFLEDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 352 ~~~~~~~~~a~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+...|++++|.+.|++....++ ..+..+...+...|++++|.+.++++....+.+..++..+...+.+.|+.++|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665433332 2345556666667777777777777766655566666666677777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004813 429 LLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC 508 (729)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 508 (729)
.++++...+ ..+...+..+...+...|++++|..+++.+.+... .+...|..+..++...|++++|...|+++.+..
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777666553 22445555666666677777777777776665432 356666677777777777777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
+.+...+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.++ .+...+..+
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 709 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELE 709 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHH
Confidence 3355566666667777777777777777766543 34455666666666666777777777766666543 255556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
...+...|++++|.+.|+++.+. .|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCH
Confidence 66666677777777777766663 344455556666666666777776666666665 355566666666666666777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcch
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEI 702 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 702 (729)
++|.++|+++.+.+ +++...+..+...+...|+
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 77777776666542 3344555666555555555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-28 Score=275.85 Aligned_cols=627 Identities=9% Similarity=0.013 Sum_probs=430.8
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-----------
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREAL----------- 134 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------- 134 (729)
-+++....++.+.|.+.++.+.... +.++..+..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCC
Confidence 3455667899999999999998765 5678889999999999999999999999998886 4443332
Q ss_pred -----HHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 135 -----ISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLL 209 (729)
Q Consensus 135 -----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 209 (729)
..+...+.+.|++++|.+.|+++.+.+ +|+...-..+........|+.++|...|+++.+.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344557889999999999999997754 34432212222222222389999999999999874 33677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--hhh-----------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPN--SRT-----------------FEIVIKGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~-----------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
..+...|+.++|++.++++.+...... ... +...+..+-.....+.|...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999866421000 001 1111111111122344555555544332223
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhH----
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP-TDDVF---- 345 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~---- 345 (729)
+... ......+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3221 2335567778999999999988887642 367788888888999999999999999888653211 11111
Q ss_pred --------HHHHHHHHccCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 004813 346 --------VDIVRGLCEVGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPI 414 (729)
Q Consensus 346 --------~~l~~~~~~~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 414 (729)
......+.+.|++++|+..+++....++. .+..+...+...|++++|++.|+++.+..+.+...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12244567888999999988875554443 4566778888899999999999998887766666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 415 RWLCENEEIRKAYELLGRMVVSSVV--------PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
..|. .++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 6664 45778888887765332100 01123445566677888999999999888877544 66677778888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------hHHHHHHHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS---------TYTKIMLGL 557 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 557 (729)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 888999999999999887643 3345555555555667888888888887764332222211 123445667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
...|+.++|.++++. ...+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 788888888888772 13355566777888888888888888888888752 224677788888888888888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC---CHHHHHHHHhhhhhcchhhhhhhc
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGW--VP---DATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+.++.+.+. .+.+...+..++.++...|++++|.++++++....- .| +...+..+...+...|..+.|...
T Consensus 658 ~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 658 AQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888887765 344566777788888888888888888888876421 11 223445555666677776666544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-26 Score=264.30 Aligned_cols=600 Identities=11% Similarity=0.017 Sum_probs=437.8
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTY----------------CKMILKLGLAGNVEEMEGLCQNMVKERYPN 129 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 129 (729)
...++...|+.++|.+.++.+.+.. |.+.... ......+.+.|++++|...|+.+.+.+ ++
T Consensus 68 ~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~ 144 (1157)
T PRK11447 68 RFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PP 144 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CC
Confidence 4566678999999999999998764 3333221 233456888999999999999998775 44
Q ss_pred CHHH-HHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HH---
Q 004813 130 VREA-LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN--VD--- 203 (729)
Q Consensus 130 ~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~--- 203 (729)
+... ...........|+.++|++.++++.+.. +-+...+..+...+... |++++|+..++++.+...... ..
T Consensus 145 ~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~-g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 145 ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS-GRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 4322 2222222334699999999999998764 44566777788888888 999999999999876421100 01
Q ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004813 204 --------------TLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ 269 (729)
Q Consensus 204 --------------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 269 (729)
.+...+..+-.....+.|...+..+......|+... ......+...|++++|+..|++..+...
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P- 300 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP- 300 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 111112222222234456666655544322333221 2335567789999999999999998643
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHH------------HHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMP-DELTYE------------ELINCLCENLRLDDANDILEDMIVI 336 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~ 336 (729)
.+...+..+...|.+.|++++|+..|++..+..... +...|. .....+.+.|++++|+..|+++.+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467788899999999999999999999998765321 111121 2234577899999999999999986
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCC--------
Q 004813 337 GLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIA-------- 405 (729)
Q Consensus 337 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------- 405 (729)
. +.+...+..+...+...|++++|++.|++....++. .+..+...|. .++.++|...++.+......
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 234556777889999999999999999986655444 3445555564 46789999888765432111
Q ss_pred -CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 406 -DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV 484 (729)
Q Consensus 406 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 484 (729)
....+..+...+...|++++|++.|++.++..+. +...+..+...+.+.|++++|...++.+.+.... +...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 1234556777888999999999999999887533 5567778888999999999999999999876443 555555555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSS---------SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
..+...++.++|...++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+..
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~ 611 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHH
Confidence 66778999999999998875432222221 223456778899999999999872 2456667788899
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 634 (729)
.+.+.|++++|++.|++..+..+. +...+..++..|...|++++|++.++.+.+. .| +...+..+..++...|+++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998554 7888999999999999999999999988864 44 4556677888899999999
Q ss_pred HHHHHHHHHHhCCC--CC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCC
Q 004813 635 LVSSGINKLVSDSE--VL---DSSMYNILINGLWKEGLTSQASYLLDLMLG-KGWV 684 (729)
Q Consensus 635 ~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~ 684 (729)
+|.++++++..... ++ +...+..++..+...|++++|.+.|++... .|+.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 99999999987621 22 234677789999999999999999999874 3444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-22 Score=220.24 Aligned_cols=574 Identities=12% Similarity=0.023 Sum_probs=307.6
Q ss_pred HcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 004813 71 DNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGA 150 (729)
Q Consensus 71 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 150 (729)
...|+++.|...|+.+.+.. |.+..++..+...+.+.|++++|+..+++..+.+ |.+...+..+ ..+ +++++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 34599999999999998875 5668889999999999999999999999999886 4444444444 222 999999
Q ss_pred HHHHHHHHhCCCcccHHhHHHHHHH--------HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 004813 151 MRVLVNMNSGGFKLSVDVFNVVLGA--------IVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYL-LEVLFETNRIESA 221 (729)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~~~~A 221 (729)
..+++++.+.. +-+..++..+... |.+ .+.|.+.++ .......|+..+.... ...|...|++++|
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 99999998763 3334444444443 443 466666665 4443344455545554 8999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 222 LDQFRRMHKKGCCPNSRTFEIVIKGLIA-NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 222 ~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
++++.++.+.+.. +..-...|..+|.. .++ +.+..+++. .+..+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 9999999998533 44556667777777 466 777777553 3346888899999999999999999999998765
Q ss_pred CCCC-CCHhhHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 301 LDLM-PDELTYEE------------------------------LINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 301 ~~~~-p~~~~~~~------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
.... |...+|.- ++..+.+.++++.++++.. +.|.......-.
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~ 349 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERY 349 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHH
Confidence 4221 22222211 1344555666665544421 223322211111
Q ss_pred HHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC---CcccchHHHHHHHhc---
Q 004813 350 RGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGKFFLAKCILEKMADRKIA---DCDSWNIPIRWLCEN--- 420 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~--- 420 (729)
.+....+...++......+-.. +......+.-...+.|+.++|.++|+........ +.....-++..|.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 1111223333333332222211 1111222222334445555555555544432110 111111222222222
Q ss_pred ----------------------CCHHHHHHHHHHHHHCC-C-CC--CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 004813 421 ----------------------EEIRKAYELLGRMVVSS-V-VP--DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV 474 (729)
Q Consensus 421 ----------------------~~~~~a~~~~~~~~~~~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 474 (729)
|+..++...++.....- . .+ +...|..+..++.. ++.++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 12222222222221110 1 11 23344444443333 45555555444444332
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 23222222233334555555555555554432 2333334444445555555555555555555443 11222222222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQL 633 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 633 (729)
......|++++|...+++.++. .|+...|..+..++.+.|++++|...+++..+. .|+ ...++.+..++...|+.
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 2333345555555555555544 234445555555555555555555555555553 222 33444455555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++|+..+++..+. .|.++..+..+..++...|++++|...+++..+
T Consensus 660 eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 660 AQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555554 234445555555555555555555555555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-21 Score=214.04 Aligned_cols=572 Identities=10% Similarity=-0.001 Sum_probs=410.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChh
Q 004813 105 KLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184 (729)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (729)
.+...|++++|...|+...+.. |.+..++..+...|...|+.++|+..+++..+. .|+...|..++..+ ++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i----~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI----PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh----ccCh
Confidence 3444599999999999999987 666999999999999999999999999999886 45555555444333 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhH
Q 004813 185 DFVFVYKEMVKAGIVPNVDTLNYLLEV--------LFETNRIESALDQFRRMHKKGCCPNSRTFEIV-IKGLIANSRVDD 255 (729)
Q Consensus 185 ~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~ 255 (729)
+|..+++++.+..+ -+..++..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 99999999998743 245555555554 5544 56666665 3333334455555555 899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 256 SVSILGEMFDLGIQLELSFYTCIIPMLCR-ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
|+.++..+.+.+. .+......|...|.. .++ +++..+++.. ++.+...+..+...|.+.|+.++|..+++++.
T Consensus 201 Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999999875 445556777778887 466 8888886642 33578889999999999999999999999876
Q ss_pred HcCCC-CCHHhHHHH------------------------------HHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHH
Q 004813 335 VIGLT-PTDDVFVDI------------------------------VRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECC 383 (729)
Q Consensus 335 ~~~~~-p~~~~~~~l------------------------------~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~ 383 (729)
..-.. |...++... +..+.+.+.++-+.++.. ..+.++ ...++..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~r~~ 350 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE---MLEERYA 350 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch---HHHHHHh
Confidence 43211 222222211 233334455554444422 222222 1122222
Q ss_pred H--hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHhhcCC--
Q 004813 384 C--NAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVS-S-VVPDCATYSAFVLGKCKLCN-- 457 (729)
Q Consensus 384 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~-- 457 (729)
. ..+...++...+..|-...+.+......+.....+.|+.++|..+|+..... + -.++......++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 1 3356667777777777665555555666666678899999999999998762 1 22334445567777776655
Q ss_pred -HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004813 458 -YEDALRV----------------------FRQVSAQ-SL-VL--DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL 510 (729)
Q Consensus 458 -~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 510 (729)
...+..+ ....... +. .+ +...|..+..++.. ++.++|...+.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 2333222 2222111 11 23 56677888887776 8999999988888775 46
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQ 590 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 590 (729)
+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++.++.++. +...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 6555444555567899999999999998654 455555667788889999999999999999887532 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
.+...|++++|...+++.++ ..|+...+..+..++.+.|+.++|+..+++..+. .|.+...++.+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHH
Confidence 55566999999999999998 4678889999999999999999999999999998 46678889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHhhhhhcchhhhhhhc
Q 004813 671 ASYLLDLMLGKGWVPD-ATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 671 A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
|++.+++..+. .|+ ...+..+-.++...|+.+.|..+
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999984 454 45678888888899998887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-21 Score=194.63 Aligned_cols=568 Identities=11% Similarity=0.011 Sum_probs=336.4
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLV 155 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 155 (729)
.+.|.+.|..+.++. +++.-.+-.-+.+....+++..|..+|..++.......+.....+..++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 577777777777664 455545444455555667777888877776665443344455556667777777777777777
Q ss_pred HHHhCCCcccHHhHHHHHHHHHhc--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 156 NMNSGGFKLSVDVFNVVLGAIVEE--KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGC 233 (729)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 233 (729)
++.+.+ +.++.++..|-..-... ...+..+...+...-... +-|....+.|.+.|...|++..+..+...+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 776643 12222222221111111 123444555555554432 33566677777777777777777777777665421
Q ss_pred C--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 004813 234 C--PNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYE 311 (729)
Q Consensus 234 ~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 311 (729)
. .-...|-.+.++|...|++++|...|.+..+.....-+..+-.|...|.+.|+++.+...|+.+.+... .+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHH
Confidence 1 112346667777777777777777777766543222233344566777777777777777777766431 2344555
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 312 ELINCLCENL----RLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 312 ~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.|...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+.. +..+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~--------------------- 437 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYG--------------------- 437 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHH---------------------
Confidence 5555555543 3455666665555432 2344445444333332222111 22111
Q ss_pred ChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HhHHHHHHHHhhcCC
Q 004813 388 KFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVS---SVVPDC------ATYSAFVLGKCKLCN 457 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~ll~~~~~~~~ 457 (729)
.|..+ +...+.. .+...|.+...+...|++++|...|...... .-.+|. .+-..+....-..++
T Consensus 438 ---~A~d~---L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 438 ---NALDI---LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred ---HHHHH---HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 11111 1122222 5556666666666666666666666665443 112222 112223334445567
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSL 537 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (729)
.+.|.+.|..+.+..+. -+..|-.++......++..+|...+++..... ..++..+..+...+.....+..|.+-|..
T Consensus 512 ~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 77777777777765321 22233333322333466777777777776643 45566666666667776777777665555
Q ss_pred HHHcC-CCCCHHhHHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 538 AYSSG-TSYTTSTYTKIMLGLV------------KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 538 ~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
..+.- ..+|+.+.-.|.+.|. ..+..++|+++|.+.++..++ |...-|.+.-.++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHH
Confidence 54432 1245555555555443 223467788888888887655 777777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
|.+..+... -+..+|..+..+|..+|++-.|+++|+..... ....+..+...|.+++.+.|.+.+|.+.+......
T Consensus 669 FsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 669 FSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 888887633 24457778888888888888888888887766 33446677888888888888888888888877764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-20 Score=181.83 Aligned_cols=443 Identities=13% Similarity=0.064 Sum_probs=304.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH-HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL-GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVL 212 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 212 (729)
...|..-..+.|++.+|++.-..+-..+ |....-..++ ..+.+. .+.+....--....+. .+.-..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~-~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQG-SRLDKSSAGSLLAIRK-NPQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcc-cchhhhhhhhhhhhhc-cchHHHHHHHHHHHH
Confidence 4445555567777777777666553321 2211112222 233333 4444433332222222 233466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcCCHHHH
Q 004813 213 FETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTC-IIPMLCRENKLEEA 291 (729)
Q Consensus 213 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A 291 (729)
-..|++.+|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.....+ +-...-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 88888888888888887752 124567777777888888888888888777763 355443333 23333346778888
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhc
Q 004813 292 IRLFKMMRALDLMPD-ELTYEELINCLCENLRLDDANDILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKC 369 (729)
Q Consensus 292 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~ 369 (729)
...|.+..+.. |. .+.|+.|...+-.+|+...|++-|++.++. .|+- ..|
T Consensus 204 ~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAY------------------------ 255 (966)
T KOG4626|consen 204 KACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAY------------------------ 255 (966)
T ss_pred HHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHH------------------------
Confidence 88877776643 33 456777777788888888888888887763 3542 334
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004813 370 GYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFV 449 (729)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 449 (729)
-.|...|...+.+++|...+.+.....+.....+..+...|..+|..+-|+..|++.++..+. =...|+.+.
T Consensus 256 -------iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 256 -------INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred -------hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 556666667777777777777776666656677777777788888888888888888776432 356788888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004813 450 LGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-SSSFNILIYGLCVMRKV 528 (729)
Q Consensus 450 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 528 (729)
.++-..|++.+|.+.++......+. .....+.|...|...|.+++|..+|....+- .|. ...++.|...|.++|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 8888888888888888888876543 5566777888888888888888888888774 343 45678888888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 529 DKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
++|+..|++.+.. .|+ ...|+.+...|-..|+.+.|.+.+.+.+..++. -...++.|...|-..|++.+|++-|++
T Consensus 405 ~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 8888888888764 454 457888888888888888888888888876433 356777888888888999999998888
Q ss_pred HHHCCCCCC-HHHHHHHHHHH
Q 004813 608 MVKAGLVPD-RETMLSLLHGL 627 (729)
Q Consensus 608 ~~~~~~~p~-~~~~~~l~~~~ 627 (729)
.++ ++|| ...|..++.++
T Consensus 482 aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 482 ALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHc--cCCCCchhhhHHHHHH
Confidence 887 5666 34555555553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-19 Score=180.85 Aligned_cols=588 Identities=11% Similarity=0.038 Sum_probs=398.1
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004813 77 SSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVN 156 (729)
Q Consensus 77 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 156 (729)
..|...|+.+-+..-..++...+......+....+.+.|.+.|..+.+.. |++.-.+..-.......+++..|..+|..
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34555555544333223333333333322222223578888888887775 55544444444444466788999999988
Q ss_pred HHhCC--CcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 004813 157 MNSGG--FKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFET---NRIESALDQFRRMHKK 231 (729)
Q Consensus 157 ~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 231 (729)
+.... .+||+.. .+-..+.+. |+.+.|...|++..+.++ .++.++-.|.-.-... ..+..++.++...-..
T Consensus 190 al~inp~~~aD~rI--gig~Cf~kl-~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 190 ALRINPACKADVRI--GIGHCFWKL-GMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHhcCcccCCCccc--hhhhHHHhc-cchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 64432 3344432 222455667 888888888888887642 2333333333222222 3345566666655443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ--LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL- 308 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 308 (729)
. .-|+...+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++|...|++++|...|.+..+.. ++.+
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~ 342 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFV 342 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcc
Confidence 2 236677778888888888888888888888754311 112346667888888888888888887777654 4433
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 309 -TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 309 -~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.+--|...+.+.|+++.+...|+.+.+.. +-+..|. ..|...|...+
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm-------------------------------~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM-------------------------------KILGCLYAHSA 390 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH-------------------------------HHHHhHHHhhh
Confidence 34456777888888888888888887742 2234444 33333343332
Q ss_pred ----ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 388 ----KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM----VVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 388 ----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
..+.|..++.+.....+.|...|-.+...+.+..-+.. +..|... ...+-.+.....|.+...+...|+++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 45677777777777766688888888877766554444 6666554 34455577888999999999999999
Q ss_pred HHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 004813 460 DALRVFRQVSAQ---SLVLDS------ISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSS-SFNILIYGLCVMRKVD 529 (729)
Q Consensus 460 ~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 529 (729)
.|...|+..... ...+|. .+--.+..++-..++++.|.+.+..+.+. .|+-+ .|..++..-...++..
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcH
Confidence 999999988754 122222 22223555666778999999999999886 35543 3444442333457888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cC
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE-GCALDVEAYCILIQSMSE------------QN 596 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~~ 596 (729)
+|...++.....+ ..++..++.+...+.+...+..|.+-|..+.+. ...+|..+...|.+.|.+ .+
T Consensus 548 ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 9999999988765 566677777888888888999999988777765 233677777777775542 24
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
..++|+++|.+.++... -|...-+.+.-.++..|++.+|..+|.+..+. ......+|-.++.+|...|+|..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHH-HhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 56789999999998532 25666677888899999999999999999998 34567789999999999999999999999
Q ss_pred HHHhCCC-CCCHHHHHHHHhhhhhcchhhhhhhcc
Q 004813 677 LMLGKGW-VPDATTHGLLVGSSVGEEIDSRRFAFD 710 (729)
Q Consensus 677 ~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~ 710 (729)
...+.-+ .-+......|.+++.+.|....+..+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9887533 456677889999999999888777653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-21 Score=182.88 Aligned_cols=445 Identities=13% Similarity=0.056 Sum_probs=225.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
.|..-..+.|++++|++.-...-.+. +.+....-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 33444445566666665544332221 111112222223333444444433322222221 1123445666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHH-HHHHHHccCChHHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVD-IVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~l 365 (729)
++++|+.+|+.+.+... .....|..+..++...|+.+.|.+.|.+.++ +.|+.....+ +...+...|++++|...+
T Consensus 131 ~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 66666666666665432 2345566666666666666666666666655 2344433321 111222233333333333
Q ss_pred HhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004813 366 EDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC 442 (729)
Q Consensus 366 ~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 442 (729)
.+.....+ ..|..|...+-..|+...|+..|++....++.-...|-.|...|...+.+++|+..|.+.....+. ..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A 286 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HA 286 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-ch
Confidence 22221111 124555555666666666666666666555544455555666666666666666666555443211 23
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
..+..+...|...|..+.|+..+++.++..+. -+..|+.|..++-..|++.+|++.+.+.+... +......+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 44445555555666666666666666554322 34456666666666666666666666665532 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 600 (729)
...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.++- .|+ ...|+.+...|-..|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHH
Confidence 6666666666666655543 222 334555555566666666666666655543 333 3455555566666666666
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCC
Q 004813 601 CALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-SSMYNILINGLWKEGL 667 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 667 (729)
|++.|.+.+. +.|. ....+.|...|...|++.+|+.-+++..+. +|| +..|..++.++.---+
T Consensus 441 A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 441 AIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 6666665554 3343 344555555666666666666666665554 232 2344444444433333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-19 Score=191.09 Aligned_cols=433 Identities=9% Similarity=-0.061 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
..+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+... .+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34556777788888999999998888764 56777788888888888888888888888887542 3456777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 004813 283 CRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESV 362 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 362 (729)
...|++++|+..|......+...+. ....++..+.. ..+.....+..+.. +++......+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~------------ 266 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN------------ 266 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH------------
Confidence 8888888888887766554321121 11122221111 12222222222221 111111111111
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH---HhcCCHHHHHHHHHHHHHCC-C
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWL---CENEEIRKAYELLGRMVVSS-V 438 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~ 438 (729)
|...........-+....+........+..+...+ ...+++++|.+.|+.....+ .
T Consensus 267 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 267 --------------------YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred --------------------HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 11110111111111111010000011111111111 22456778888888777654 2
Q ss_pred CC-CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 439 VP-DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 439 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
.| ....+..+...+...|++++|...++...+..+. +...|..+...+...|++++|...|+++.+.. +.+..+|..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 22 3345666667777788888888888888776432 45567777777888888888888888887753 345677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++.++..+. +...|+.+...+...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccC
Confidence 8888888888888888888887764 345666777778888888888888888888776332 56777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRE------TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 671 (729)
+++|++.|++.++.....+.. .++.....+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888887742111111 11112222334688888888888887763 44556788888888888888888
Q ss_pred HHHHHHHHhC
Q 004813 672 SYLLDLMLGK 681 (729)
Q Consensus 672 ~~~~~~~~~~ 681 (729)
+++|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 8888888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-21 Score=195.04 Aligned_cols=311 Identities=11% Similarity=0.009 Sum_probs=259.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHhhcC
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD---CATYSAFVLGKCKLC 456 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~ 456 (729)
...+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456789999999999999998877778899999999999999999999999987543222 246778888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----SSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~ 532 (729)
+++.|..+|+.+.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999987643 4678899999999999999999999999988642222 124566777888999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 533 RLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG 612 (729)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 612 (729)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998764 34566788888999999999999999999998754433567888999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 613 LVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK---EGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++|..++++|.+.+++|+..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 577777788999999999999999999999886 5788889888888775 569999999999999988877765
Q ss_pred HHHHHhhhhhcch
Q 004813 690 HGLLVGSSVGEEI 702 (729)
Q Consensus 690 ~~~ll~~~~~~~~ 702 (729)
..|..+|.
T Consensus 355 -----~~c~~cg~ 362 (389)
T PRK11788 355 -----YRCRNCGF 362 (389)
T ss_pred -----EECCCCCC
Confidence 34555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-18 Score=184.88 Aligned_cols=429 Identities=9% Similarity=-0.053 Sum_probs=301.3
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004813 168 VFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGL 247 (729)
Q Consensus 168 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 247 (729)
.+...-..+.+. |+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345566777888 9999999999999875 6778889999999999999999999999998753 23566888899999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 004813 248 IANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDAN 327 (729)
Q Consensus 248 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 327 (729)
...|++++|+.-|..+...+...+.. ...++..+.. ..+........+... ++...+..+.. +..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch
Confidence 99999999999888776543222222 1222222212 223333333333221 22223332222 22211111111
Q ss_pred HHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHH---HHhcCChhHHHHHHHHHHhCC
Q 004813 328 DILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLEC---CCNAGKFFLAKCILEKMADRK 403 (729)
Q Consensus 328 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 403 (729)
.-+.+..+ ..+.. ..+ ..+... ....+++++|.+.|++....+
T Consensus 278 ~~~~~~~~--~~~~~~~~~-------------------------------~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQ-------------------------------LQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhhcccc--cccccccch-------------------------------HHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 11111111 01110 000 011100 123467888999998888764
Q ss_pred C--C-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004813 404 I--A-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISY 480 (729)
Q Consensus 404 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (729)
. + ....|+.+...+...|++++|+..+++.....+. +...|..+...+...|++++|...|+.+.+.... +...|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 2 2 5567888888888999999999999998876422 3557788888889999999999999999887544 67888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL 560 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 560 (729)
..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...++.+...+...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 889999999999999999999998864 3456777888889999999999999999988764 45577888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 004813 561 QRAKDLLVVLAQMLVEGCALDVE------AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQL 633 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 633 (729)
|++++|++.|++..+.....+.. .++..+..+...|++++|.+++++.++. .|+ ...+..+...+...|++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCH
Confidence 99999999999988764321111 1222222334469999999999998875 344 45688899999999999
Q ss_pred HHHHHHHHHHHhC
Q 004813 634 HLVSSGINKLVSD 646 (729)
Q Consensus 634 ~~A~~~~~~~~~~ 646 (729)
++|++.|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=188.99 Aligned_cols=300 Identities=12% Similarity=0.042 Sum_probs=163.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHccCCh
Q 004813 282 LCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTD---DVFVDIVRGLCEVGKF 358 (729)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~ 358 (729)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++. ..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~------------- 110 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL------------- 110 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH-------------
Confidence 4455666666666666665432 23445666666666666666666666666553211111 111
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSV 438 (729)
Q Consensus 359 ~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 438 (729)
..+...|.+.|+++.|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+...+.
T Consensus 111 ------------------~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 111 ------------------QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ------------------HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 44555555666666666666665554333445555566666666666666666666655432
Q ss_pred CCCH----HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004813 439 VPDC----ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 439 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 514 (729)
.+.. ..+..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++|.++++++...+......+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 2211 12334444555666666666666666554322 344555556666666666666666666655321111234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 5555666666666666666666665542 34444455556666666666666666665554 4555555555555443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 595 ---QNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 595 ---~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
.|+.+++..++++|.+.++.|++.
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 335566666666666554444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-17 Score=179.79 Aligned_cols=358 Identities=11% Similarity=0.052 Sum_probs=213.8
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004813 214 ETNRIESALDQFRRMHKK--GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEA 291 (729)
Q Consensus 214 ~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (729)
+..+|+.-.-+|....+. .-.-+......++..+.+.|+++.|..+++......... ...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 445555554444443321 001122333445566677777777777777777654433 33334444555667778888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcC
Q 004813 292 IRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCG 370 (729)
Q Consensus 292 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~ 370 (729)
.+.|+++....+ .+...+..+...+...|++++|...++++.+. .|+ ...+
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~------------------------- 147 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIF------------------------- 147 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-------------------------
Confidence 887777776542 34456666677777777888887777777763 344 3333
Q ss_pred CCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 371 YVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVL 450 (729)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 450 (729)
..+...+...|++++|...++.+....+.+...+..+ ..+...|++++|...++.+......++...+..+..
T Consensus 148 ------~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 148 ------ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred ------HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4455556666666666666666555444433333332 235566777777777766655533333344444455
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 451 GKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITE----AVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 451 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (729)
.+...|++++|...++.+.+.... +...+..+...+...|++++ |...|+++.+.. +.+...+..+...+...|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 666677777777777776665433 55566666677777777664 667777776642 334556666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++++|...++++.+.. +.+...+..+..++.+.|++++|...|+++...++. +...+..+..++...|++++|.+.|+
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776654 233445556666777777777777777777665322 22223334556667777777777777
Q ss_pred HHHHC
Q 004813 607 VMVKA 611 (729)
Q Consensus 607 ~~~~~ 611 (729)
+..+.
T Consensus 377 ~al~~ 381 (656)
T PRK15174 377 HYIQA 381 (656)
T ss_pred HHHHh
Confidence 76663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-17 Score=176.29 Aligned_cols=328 Identities=12% Similarity=0.023 Sum_probs=162.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCC
Q 004813 102 MILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKR 181 (729)
Q Consensus 102 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (729)
++..+.+.|++++|..+++...... +.+...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+. |
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~-g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS-K 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-C
Confidence 3444555566666666655555543 3344444455555555566666666666655432 23334444444555555 5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 182 GFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILG 261 (729)
Q Consensus 182 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (729)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHHH
Confidence 6666666666555542 223445555555555566666666655555443211 1112212 223445566666666655
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH----HHHHHHHHHHcC
Q 004813 262 EMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDD----ANDILEDMIVIG 337 (729)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~ 337 (729)
.+.+....++...+..+...+...|++++|...|++...... .+...+..+...+...|++++ |...|++..+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 555443223333333344555556666666666665555432 234445555555555665553 55555555543
Q ss_pred CCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 004813 338 LTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRW 416 (729)
Q Consensus 338 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 416 (729)
.|+ ...+ ..+...+.+.|++++|...+++.....+.+...+..+...
T Consensus 280 -~P~~~~a~-------------------------------~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 280 -NSDNVRIV-------------------------------TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred -CCCCHHHH-------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 232 2233 3444444455555555555555554444444444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 004813 417 LCENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQ 471 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 471 (729)
+.+.|++++|...|+++...+ |+. ..+..+..++...|+.++|...|+...+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555555555554432 222 12222334445555555555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-17 Score=177.87 Aligned_cols=421 Identities=11% Similarity=0.058 Sum_probs=243.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (729)
..-.+......|+.++|++++.+..... ..+...+..+...+...|++++|..++++..+..+ .+...+..++..+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3344444555566666666655554311 22333455555555555666666666665554321 223344455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.|++++|+..+++..+... .+.. +..+...+...|+.++|+..++++.+. .|+....
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~------------------- 152 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQY------------------- 152 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-------------------
Confidence 5666666665555554421 2233 555555555555555555555555553 2332221
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCAT 444 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 444 (729)
+..+...+...+..+.|...++.... .+ + + ....+ ...
T Consensus 153 -----------~~~la~~l~~~~~~e~Al~~l~~~~~-~p-~---~-------------~~~l~-------------~~~ 190 (765)
T PRK10049 153 -----------PTEYVQALRNNRLSAPALGAIDDANL-TP-A---E-------------KRDLE-------------ADA 190 (765)
T ss_pred -----------HHHHHHHHHHCCChHHHHHHHHhCCC-CH-H---H-------------HHHHH-------------HHH
Confidence 03334444455555555555544332 10 0 0 00000 000
Q ss_pred HHHHHHHH-----hhcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHCCCC-
Q 004813 445 YSAFVLGK-----CKLCNY---EDALRVFRQVSAQ-SLVLDSI-SY----SKLVEGLCQVEKITEAVEVFCCMSKNGCS- 509 (729)
Q Consensus 445 ~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 509 (729)
...++... ...+++ ++|...++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 00111111 111223 6677777777643 1122211 11 11123345668888888888888776421
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------
Q 004813 510 LSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY---TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-------- 578 (729)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------- 578 (729)
|+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+....+
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 221 22224667888888888888888877643211 123455566677888888888888888876532
Q ss_pred ---CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 004813 579 ---ALD---VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652 (729)
Q Consensus 579 ---~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (729)
.|+ ...+..+...+...|++++|+++++++... .+-+...+..+...+...|+.++|++.++++.+. .|.+.
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCh
Confidence 123 234456677888899999999999999875 2334677888888999999999999999999987 35567
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
..+..++..+...|++++|..+++++++. .|+......+=...
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 78888888999999999999999999974 67766554444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-16 Score=174.94 Aligned_cols=418 Identities=11% Similarity=0.010 Sum_probs=237.3
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI 242 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 242 (729)
+.+.....-.+...... |+.++|+.++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33444444455555566 77777777777776521 3445567777777777777777777777766541 223455556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 243 VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
+...+...|++++|...++++.+... .+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 66677777777777777777776532 3344 66677777777888888888877777542 234445556666677777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHH-----HhcCCh---hHHHH
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECC-----CNAGKF---FLAKC 394 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~ 394 (729)
.+.|+..++.... .|+.... +. ...+ ..++..+ ...+++ ++|+.
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~---l~-------~~~~---------------~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRD---LE-------ADAA---------------AELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHH---HH-------HHHH---------------HHHHHhhcccccChhHHHHHHHHHHH
Confidence 7777777765543 2321000 00 0000 1111111 112223 55666
Q ss_pred HHHHHHhCCCCCcccchH-------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 395 ILEKMADRKIADCDSWNI-------PIRWLCENEEIRKAYELLGRMVVSSVV-PDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
.++.+......++..... .+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|...|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666432211111111 123345667777777777777766432 322 12223556777777777777777
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 004813 467 QVSAQSLVL---DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-----------SLS---SSSFNILIYGLCVMRKVD 529 (729)
Q Consensus 467 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~ 529 (729)
.+.+..... .......+..++...|++++|..+++.+....- .|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 766543211 123445555566777777777777777765420 011 123344555566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+|+++++++.... +.+...+..+...+...|++++|++.+++.+...+. +...+...+..+...|++++|..++++++
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666665543 334555666666666666666666666666655322 34444455555666666666666666666
Q ss_pred HCCCCCCHHH
Q 004813 610 KAGLVPDRET 619 (729)
Q Consensus 610 ~~~~~p~~~~ 619 (729)
+ ..|+...
T Consensus 455 ~--~~Pd~~~ 462 (765)
T PRK10049 455 A--REPQDPG 462 (765)
T ss_pred H--hCCCCHH
Confidence 5 3444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-15 Score=151.93 Aligned_cols=608 Identities=12% Similarity=0.066 Sum_probs=405.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
+..+..+|+.+.|.+++..+.++. +.....|..+..+|-..|+.+.+...+-..-..+ |.+...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 444556799999999999999986 6677889999999999999999998887776655 6677999999999999999
Q ss_pred hhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHH
Q 004813 147 VNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY----LLEVLFETNRIESAL 222 (729)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~~~~~~A~ 222 (729)
+++|.-.|.++++.. +++...+-.-...|.+. |+...|...|.++.....+.|..-+.. .++.+...++-+.|.
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999998875 45555555566778888 999999999999998754333333333 355666778889999
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH--------------------------
Q 004813 223 DQFRRMHKK-GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFY-------------------------- 275 (729)
Q Consensus 223 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------- 275 (729)
+.++..... +-.-+...+++++..+.+...++.+......+.....++|..-|
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999887763 22345567888888899999999999888887662222222211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRALDL--MPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
--++-++.+.+..+....+...+.+.++ .-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1223334444445555555555555553 33456788889999999999999999999998765566778989999999
Q ss_pred ccCChHHHHHHHHhhcCCCCCC---chHHHHHHHhcCChhHHHHHHHHHHhCCCC---------CcccchHHHHHHHhcC
Q 004813 354 EVGKFDESVNFLEDKCGYVTSP---HNALLECCCNAGKFFLAKCILEKMADRKIA---------DCDSWNIPIRWLCENE 421 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 421 (729)
..|..++|.+.++......+.. -..|...+.+.|+.++|.+.++.+...+.. +........+.+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999866655554 455667888999999999999987644422 1222334556677889
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCH-----------------HhHHHHHHHHhhcCCHHHHHHHHH------HHHhCCC
Q 004813 422 EIRKAYELLGRMVVSS-----VVPDC-----------------ATYSAFVLGKCKLCNYEDALRVFR------QVSAQSL 473 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~-----~~p~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~ 473 (729)
+.++-+.+...|+... +-|+. .+...+..+-.+.++......-.. .....+.
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 9888777777776532 11111 111111222222222111111111 1111122
Q ss_pred CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--
Q 004813 474 VLDS--ISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLSS---SSFNILIYGLCVMRKVDKAIRLRSLAYSS-GT-- 543 (729)
Q Consensus 474 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-- 543 (729)
.-+. ..+.-++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|... +.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 2222 2356677788899999999999988876421 1122 12245566777889999999998888765 11
Q ss_pred -CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 544 -SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 544 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
.--...|+..++.+.+.++-.--.+.+.........-+..............+.+.-|+..|-+.... .||....+.
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl 778 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINL 778 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHH
Confidence 12234566555666655544333444444433322212233333344556778899999988887774 566444333
Q ss_pred HH-HHHh----------ccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 623 LL-HGLA----------DGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 623 l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
++ -++. ++-.+-.+...+++..+.... .-...+..++++|-..|-..-|..+|++.++-
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 32 2322 122234566666666665211 13456777999999999999999999999964
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-15 Score=163.09 Aligned_cols=449 Identities=13% Similarity=0.073 Sum_probs=258.8
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 004813 176 IVEEKRGFADFVFVYKEMVKAGIVPNV--DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV 253 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 253 (729)
..+. |+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|++
T Consensus 44 ~~r~-Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARA-GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhC-CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3444 77777777777777652 332 233 66666666677777777777766210 11112222224456666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 254 DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
++|+++++++.+..+ .+...+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 777777777776543 234555566666777777777777777766643 44444433433343445554577777777
Q ss_pred HHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchH
Q 004813 334 IVIGLTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNI 412 (729)
Q Consensus 334 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (729)
.+.. |+ ...+ ..+...+.+.|-...|.++..+-...- +...+.-
T Consensus 196 l~~~--P~n~e~~-------------------------------~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~ 240 (822)
T PRK14574 196 VRLA--PTSEEVL-------------------------------KNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ 240 (822)
T ss_pred HHhC--CCCHHHH-------------------------------HHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH
Confidence 6643 43 3333 555566666676666666555422110 1111000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCH-HH----HHHHHHH
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQ-SLVLDS-IS----YSKLVEG 486 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~ 486 (729)
+ +.+.|.+..+. +..++..- . .+.--.+.|..-++.+... +..|.. .. ..-.+-+
T Consensus 241 l--------~~~~~a~~vr~----a~~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 241 L--------ERDAAAEQVRM----AVLPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred H--------HHHHHHHHHhh----cccccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 0 01111111111 11110000 0 0000134444444444431 111211 11 1223445
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHhcC
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-----SYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 561 (729)
+...|++.++++.++.+...+.+....+-..+.++|...+++++|..+|+.+..... .++......|.-++...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 666778888888888887776555566777778888888888888888887765431 223333466777788888
Q ss_pred ChhHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGC-------------ALDVE-AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (729)
++++|..+++++.+..+ .||-. .+..++..+...|++.+|.+.++++.... +-|......+...+
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~ 460 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIY 460 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88888888888876321 12222 23344566777888888888888887652 33667777888888
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
...|...+|++.++..... .+.+..+....+..+...|+|++|..+.+.+.+. .|+....
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 461 LARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 8888888888888766665 4556667777888888888888888888877763 4655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-13 Score=134.88 Aligned_cols=575 Identities=13% Similarity=0.080 Sum_probs=313.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH--
Q 004813 74 NDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM-- 151 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-- 151 (729)
++...|..+++.+.+..+. .+..|-.-.+.=-..|++..|..+...--+. ++-+..+|.-.+ +....+.|.
T Consensus 265 ~DikKaR~llKSvretnP~--hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK--HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 4667888888888765432 3333433333344456666666555443332 233333333322 122222233
Q ss_pred -----------------------------HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 004813 152 -----------------------------RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNV 202 (729)
Q Consensus 152 -----------------------------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 202 (729)
+++.+..+. ++.++..|-..+ .. .+.+.|.-++.+..+- ++.+.
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----el-E~~~darilL~rAvec-cp~s~ 410 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----EL-EEPEDARILLERAVEC-CPQSM 410 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hc-cChHHHHHHHHHHHHh-ccchH
Confidence 333333332 233333333222 22 4444455566655553 22223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHhHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF----DLGIQLELSFYTCI 278 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l 278 (729)
..| .+|.+..-++.|..+++...+. ++.+..+|.+....--.+|+.+...+++++-. ..|+..+...|-.=
T Consensus 411 dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 322 3444555566677777666653 45566666665555566666666666665543 34666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 004813 279 IPMLCRENKLEEAIRLFKMMRALDLMP--DELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 356 (729)
...+-+.|..-.+..+.......|+.- -..||..-...|.+.+.++-|..+|...++- .+-+...+......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC
Confidence 666666666666666666666555432 2345666666666777777777776666552 1222333433333334455
Q ss_pred ChHHHHHHHHhhcCCCC---CCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 357 KFDESVNFLEDKCGYVT---SPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 357 ~~~~a~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
..++...+|++.....+ ..|-.....+-..|++..|..++...-+..+.+..+|-.-+.....+.+++.|..+|.+.
T Consensus 565 t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 56665555555333222 234444444555566666666666666665556666666666666666666666666665
Q ss_pred HHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 434 VVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSS 513 (729)
Q Consensus 434 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 513 (729)
... .|+...|..-++.---.++.++|.+++++.++. +..-...|..+.+.+-+.++++.|.+.|..-.+. ++..+.
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 543 445555555444445556666666666666654 2223345555666666666666666666554443 233455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (729)
.|-.|...--+.|++-+|..++++..-.+ +.+...|...|+.-.+.|+.+.|..+..+.++. +.-+...|.--|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 56555555556666666666666665554 445566666666666666666666666666554 2224445555554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 594 EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
+.++-...... +.+ ..-|..+...+...+-...++++|++.|.+..+. .+..-.+|..+...+.++|.-++-.+
T Consensus 799 ~~~rkTks~DA---Lkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 799 RPQRKTKSIDA---LKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-DPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred CcccchHHHHH---HHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCccchHHHHHHHHHHHhCCHHHHHH
Confidence 44442222222 222 2334555555566666666667777777766665 24445566666666666666666666
Q ss_pred HHHHHHh
Q 004813 674 LLDLMLG 680 (729)
Q Consensus 674 ~~~~~~~ 680 (729)
++.....
T Consensus 873 v~~~c~~ 879 (913)
T KOG0495|consen 873 VLKKCET 879 (913)
T ss_pred HHHHHhc
Confidence 6665553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-15 Score=157.35 Aligned_cols=202 Identities=8% Similarity=-0.039 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS-----LVLDSISYSKLVEGL 487 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 487 (729)
.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+.... ..++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 345566677777777777777777655444566677777777777777777777776532 122333346677777
Q ss_pred HccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 004813 488 CQVEKITEAVEVFCCMSKNGC-----------SLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKI 553 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 553 (729)
...+++++|..+++++.+... .|+ ...+..++..+...|+..+|++.++++.... +-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 777788888777777766210 011 1122334555666677777777777776554 4556666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
...+...|.+.+|++.++......+. +..+....+.++...+++.+|..+.+.+.+. .|+..
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 77777777777777777655554322 4455556666666677777777777766663 44443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-15 Score=138.17 Aligned_cols=436 Identities=13% Similarity=0.128 Sum_probs=267.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--Chh-hHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHY--RVN-GAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
..+|...++--+|+.|...|++.+..+-..|++.-+-.+ ++- .-.+.|-.|...| ..+..+| +. |+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~-G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS-GAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc-ccH
Confidence 345666666666777766666666655555544332222 221 1233344444333 1122222 11 322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEM 263 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 263 (729)
|. ++-+.. +.+..+|.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|
T Consensus 196 --Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EM 264 (625)
T KOG4422|consen 196 --AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEM 264 (625)
T ss_pred --HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHH
Confidence 22 222222 446778888888888888888888888888877777788888888876543322 7788888
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHc--
Q 004813 264 FDLGIQLELSFYTCIIPMLCRENKLEEA----IRLFKMMRALDLMPDELTYEELINCLCENLRLDD-ANDILEDMIVI-- 336 (729)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~-- 336 (729)
....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 8888888888888888888888877654 4566788888888888888888888888777644 44444554431
Q ss_pred --C---CCCC-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCC------C
Q 004813 337 --G---LTPT-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRK------I 404 (729)
Q Consensus 337 --~---~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 404 (729)
. +.|+ ...|...+..|....+.+-| .++-.-..... .
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-------------------------------~~v~~ll~tg~N~~~ig~ 393 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELA-------------------------------YQVHGLLKTGDNWKFIGP 393 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHH-------------------------------HHHHHHHHcCCchhhcCh
Confidence 1 2232 33444444444444444444 33333222111 1
Q ss_pred C--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 405 A--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK 482 (729)
Q Consensus 405 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (729)
. ...-|..+....|+....+.....|+.|.-+-.-|+..+...++.+..-.+.++-..++|.++...|.........-
T Consensus 394 ~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee 473 (625)
T KOG4422|consen 394 DQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE 473 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 22345566777888888999999999998888888999999999998888999999999998888765433333333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSSS---SFNILIYGLCVMRKVDKA-IRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
++..++ .....|+.. -+.....-|+ -++.++ ...-.++.+. .......+.++-.+.
T Consensus 474 il~~L~----------------~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 474 ILMLLA----------------RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHh----------------cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 333333 222222222 1222111111 112222 1222344443 344455666677788
Q ss_pred hcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004813 559 KLQRAKDLLVVLAQMLVEGC----ALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV 614 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 614 (729)
+.|+.++|.+++.-+.+.+- .|......-+++.-.+.++..+|..+++-|...+..
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 88999999999988866532 234444445666677778888888888888765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-14 Score=143.01 Aligned_cols=578 Identities=13% Similarity=0.094 Sum_probs=324.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHh
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVE 178 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (729)
.-..+..+...|++++|..++.+++++. |.....|..|...|-.+|+.+++...+-.+...+ +-|...|..+-....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3334445556699999999999999997 7788999999999999999999999887776654 5566788888888888
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCChh
Q 004813 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFE----IVIKGLIANSRVD 254 (729)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~ 254 (729)
. |+++.|.-+|.+.++.. +++...+---+..|-+.|+...|.+-|.++.....+.|..-+. ..++.+...++-+
T Consensus 220 ~-~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 L-GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred c-ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 7 99999999999999875 4455555556778889999999999999998863322322222 3456677778889
Q ss_pred HHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----------------------H
Q 004813 255 DSVSILGEMFDL-GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTY----------------------E 311 (729)
Q Consensus 255 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----------------------~ 311 (729)
.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-| .
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999988888752 23455667888999999999999999988877763222222211 1
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHccCChHHHHHHHHhhcCC----CCCCchHHHH
Q 004813 312 ----ELINCLCENLRLDDANDILEDMIVIGLTP--TDDVFVDIVRGLCEVGKFDESVNFLEDKCGY----VTSPHNALLE 381 (729)
Q Consensus 312 ----~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~~~l~~ 381 (729)
-+.-++......+....+...+.+..+.| +...|..+..++.+.|++.+|.++|...... +..+|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 11222333333344444444444444222 3444555555566666666665555542221 1224555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHhHHHHHHHHh
Q 004813 382 CCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV--------SSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~~~~ 453 (729)
+|...|.+++|.+.++......+.+...-..|...+.+.|+.++|.+.++.+.. .+..|+..........+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 555555555555555555555554444445555555555555555555555421 112222222223333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 454 KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 454 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+.|+.++-..+-..|.... ....++. -+..++... .....+.+........++.+-.+.++.....+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 604 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDF------LKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEK 604 (895)
T ss_pred HhhhHHHHHHHHHHHHHHH------HHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhh
Confidence 4444444333333322210 0000000 000000000 00000011112222223333333333221111
Q ss_pred HH------HHHHHcCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHH
Q 004813 534 LR------SLAYSSGTSYTT--STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC--ALDV---EAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 534 ~~------~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~ 600 (729)
-. ......++..+. ..+..++..+++.+++++|+.+...+..... .++. ..=...+.+....+++..
T Consensus 605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 11 111112222221 2345566778888888888888887776421 1111 112334556677888888
Q ss_pred HHHHHHHHHHC-CCC--CC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 601 CALFFNVMVKA-GLV--PD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 601 A~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
|...++.|+.. +.. |. ...|+..++...+.++-.--...+..+.......++..+......+..+|.+..|+..+-
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ 764 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYM 764 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHH
Confidence 88888888865 221 22 234444445555555544444444444433222223333344455667788888888877
Q ss_pred HHHhCCCCCCHHHHHHHHh
Q 004813 677 LMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 677 ~~~~~g~~p~~~~~~~ll~ 695 (729)
+.... .||....+..|.
T Consensus 765 ra~~~--~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 765 RAFRQ--NPDSPLINLCLG 781 (895)
T ss_pred HHHHh--CCCCcHHHHHHH
Confidence 77664 577555444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-13 Score=131.70 Aligned_cols=569 Identities=10% Similarity=0.020 Sum_probs=409.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH------------HHHHHH
Q 004813 110 GNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV------------VLGAIV 177 (729)
Q Consensus 110 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------ll~~~~ 177 (729)
++...|..++....+.+ |.++..|.+-.+.=-..|++..|..+..+--+. .+.+...|.. ++.-.+
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 56788999999999887 555566666665556667777776666544222 1222222221 111111
Q ss_pred hc--------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 004813 178 EE--------------KRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIV 243 (729)
Q Consensus 178 ~~--------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 243 (729)
+. ..+...=.+++.+..+. ++.++..|-. .+.....++|.-++.+..+- ++.+. -|
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~----dL 412 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM----DL 412 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----HH
Confidence 10 01122223344444443 2334444433 33445556677777777663 22222 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHhhHHHHHHHHHh
Q 004813 244 IKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKM----MRALDLMPDELTYEELINCLCE 319 (729)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~~~~li~~~~~ 319 (729)
.-++++..-++.|..+++...+. ++.+..+|.+-...--.+|+.+...+++++ +...|+..+...|-.=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44667777888899998888773 556777887777777788888888888754 4456787888888888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHhhcCC---CCCCchHHHHHHHhcCChhHHHH
Q 004813 320 NLRLDDANDILEDMIVIGLTPT--DDVFVDIVRGLCEVGKFDESVNFLEDKCGY---VTSPHNALLECCCNAGKFFLAKC 394 (729)
Q Consensus 320 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 394 (729)
.|..-.+..+....+.-|+.-. ..|+..-...|.+.+.++-++.+|...... ..+.|......--..|..++...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888877766433 457777788888999999888888765443 34457777766777888999999
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 004813 395 ILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV 474 (729)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 474 (729)
+|++....-+.....|......+-..|+...|..++....+.... +...|...+..-.....++.|..+|...... .
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 999988887767778888888888889999999999998887544 6677777778888888999999999888764 4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
|+...|.--+....-.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+. ++..+..|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 56667666666666678999999999998885 2334557788888888889999988887765544 345567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (729)
..-.+.|..-.|..++++..-++++ +...|-..|+.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccch
Confidence 8888888999999999999888776 8888999999999999999999998888875 4445667777777777777766
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHhhhhhcchhhh
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA-TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 705 (729)
.....+++. .-|+.+.-.+...+....++++|.++|++.... .||. .+|.-+..-....|..+.
T Consensus 805 ks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 805 KSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHH
Confidence 666665544 347788889999999999999999999999974 5665 456777777777775443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-14 Score=130.63 Aligned_cols=449 Identities=16% Similarity=0.163 Sum_probs=254.5
Q ss_pred ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHH-HHHHHHHHHHhCCCCCChhhH
Q 004813 164 LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF--ETNRIE-SALDQFRRMHKKGCCPNSRTF 240 (729)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~~~~~-~A~~~~~~m~~~~~~p~~~~~ 240 (729)
..+.+=|.|+..... |....+--+|+.|...|++.+...-..|...-+ ...++- .-.+.|-.|...|- .+..+|
T Consensus 114 ~~V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW 190 (625)
T KOG4422|consen 114 LQVETENNLLKMISS--REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW 190 (625)
T ss_pred hhhcchhHHHHHHhh--cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc
Confidence 344566777776654 788999999999999988877776666555433 222322 22344555555442 233444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004813 241 EIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCEN 320 (729)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 320 (729)
+.|++.+ -+++. .+-+..+|..+|.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 --------K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 --------KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred --------ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3344333 22222 23456789999999999999999999999998887788999999998875533
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHH
Q 004813 321 LRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMA 400 (729)
Q Consensus 321 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 400 (729)
. ..+++.+|....+.||..|+ |+++.+..+.|+++.|..
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~Tf-------------------------------NalL~c~akfg~F~~ar~------ 294 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTF-------------------------------NALLSCAAKFGKFEDARK------ 294 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhH-------------------------------HHHHHHHHHhcchHHHHH------
Confidence 3 27888999999999999999 666666666666554432
Q ss_pred hCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHH-HHHHHHHHHh----CCCC-
Q 004813 401 DRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYED-ALRVFRQVSA----QSLV- 474 (729)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~- 474 (729)
.|.+++.+|++-|+.|...+|..++..+++.++..+ +..+..++.. ..++
T Consensus 295 ------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 295 ------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred ------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 234445555555555555555555555555554432 2222222221 1111
Q ss_pred ---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004813 475 ---LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG----CSLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 475 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (729)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 133344444555555555555555444332210 1111 122344445555555555555556555555555
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------------------CHHHHHH-
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN--------------------KLKDCAL- 603 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------------------~~~~A~~- 603 (729)
|+..+...++++....+.++-.-++|..+...|...+...-.-++..+++.. ++.++-+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555443333332222222222222 1111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCCCHHhHH---HHHHHHHhcCChhHHHHHHHHHH
Q 004813 604 FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVLDSSMYN---ILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
--.+|.+ ..-.....+.++-.+.+.|+.++|.+++..+...+ --|-....| .+.+.-.+.++...|...++-|.
T Consensus 511 ~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1122332 23334455666667788888888888888885542 223333344 55666667788888888888887
Q ss_pred hCCCCCCHHHHHHHHhhh
Q 004813 680 GKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 680 ~~g~~p~~~~~~~ll~~~ 697 (729)
..++..-....+-+...|
T Consensus 589 ~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 589 AFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HcCchhhhHHHHHHHHhc
Confidence 665443333334444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-14 Score=132.71 Aligned_cols=280 Identities=9% Similarity=0.002 Sum_probs=205.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCC
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIA--DCDSWNIPIRWLCENE-EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCN 457 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 457 (729)
..|.+.|+++.|.++++-..+.+-. +...-|.-+--|.+.| ++..|.+.-+..+... .-+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3477889999999998888777543 2222232233333333 5666666666554322 1222222222333456789
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSL 537 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (729)
+++|.+.+++.+..........|+ +.-.+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998764332333333 333466789999999999888653 234677777888889999999999999887
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004813 538 AYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR 617 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 617 (729)
.... ++.|+.....|...|-+.|+..+|.+.+-+--+. +..+..+...|...|....-+++++.+|++..- ++|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7654 4677888999999999999999998876655443 445788888888888888889999999998765 78999
Q ss_pred HHHHHHHH-HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 618 ETMLSLLH-GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 618 ~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
.-|..++. ++.+.|++.+|.++++....+ ++.|..++..|++.+...|..
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 99988776 456789999999999999888 888999999999999888853
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-15 Score=139.11 Aligned_cols=482 Identities=12% Similarity=0.044 Sum_probs=303.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHH
Q 004813 205 LNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI-VIKGLIANSRVDDSVSILGEMFDLGIQLE----LSFYTCII 279 (729)
Q Consensus 205 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li 279 (729)
...|..-|.......+|+..|+-+.+....|+...... +...+.+...+.+|+++++...+.-+..+ ..+.+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33445556566667788888888877777777654332 34556677788888888887765422222 22344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH------------HH
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVF------------VD 347 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~~ 347 (729)
..+.+.|+++.|+.-|+...+.. ||..+-..|+-++..-|+-++..+.|.+|+.-...||..-| +.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 56778888999988888877653 77776666666666778888888888888764433443322 11
Q ss_pred HHH-----HHHccCChHHHHHHHH-hhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC
Q 004813 348 IVR-----GLCEVGKFDESVNFLE-DKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENE 421 (729)
Q Consensus 348 l~~-----~~~~~~~~~~a~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (729)
.+. -..+.+ -..|.+.+- ...-..+..-.....+ .+-..+.++.-....+ -...--.-..-+.++|
T Consensus 362 ai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g------~dwcle~lk~s~~~~l-a~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 362 AIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAG------CDWCLESLKASQHAEL-AIDLEINKAGELLKNG 433 (840)
T ss_pred HHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcc------cHHHHHHHHHhhhhhh-hhhhhhhHHHHHHhcc
Confidence 111 000000 000111000 0000000000000000 0111111111110000 0000111233477899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHH--HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAF--VLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
+++.|+++++-+.+..-+.-+..-+.| +.....-.++..|.++-+......- -+......-.+.-..+|++++|.+.
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999999988765433222222222 2222223457777777776654321 1333333333344568999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA 579 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 579 (729)
+++.+...-.-....||. .-.+-..|++++|+..|-++... +..+......+...|....+..+|++++.+.... +.
T Consensus 513 ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 999987532222333332 33456789999999999887543 2456667777888899999999999999887655 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 580 LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 580 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
-|+....-|.+.|-+.|+-.+|.+.+-+-.+. ++.+..+...|..-|....-+++++.+|++..- +.|+.+-|..|+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 47888999999999999999999987766553 555778888888888888889999999999875 689999999877
Q ss_pred H-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhh
Q 004813 660 N-GLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDS 704 (729)
Q Consensus 660 ~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~ 704 (729)
. ++.+.|++.+|+++++...+. ++-|......|++.|...|..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 5 455779999999999999875 7778888999999987666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-12 Score=122.90 Aligned_cols=477 Identities=10% Similarity=0.051 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA 175 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (729)
...|-...+.=..++++..|..+|++.++.+ ..+...|..-+..=.+...+..|..++++....-...|.. |-..+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHH
Confidence 3334333344444555666666666666554 3445555556666666666666666666665432122222 2222222
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 004813 176 IVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDD 255 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 255 (729)
--.. |+...|.++|++..+ ..|+..+|++.|+.=.+.+.++.|..++++..-- .|++.+|-...+.-.+.|+...
T Consensus 151 EE~L-gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEML-GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHh-cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 2233 666666666666654 3566666666666666666666666666665532 3566666555555555666666
Q ss_pred HHHHHHHHHHC-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 256 SVSILGEMFDL-GI-QLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 256 a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
+..+|+...+. |- ..+...+.+....-.++.. ++.|.-+|+-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE-----------------------------------~ERar~iykyA 270 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE-----------------------------------YERARFIYKYA 270 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHH
Confidence 66666555431 10 0112223333333333334 44444444444
Q ss_pred HHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 004813 334 IVIGLTPT--DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWN 411 (729)
Q Consensus 334 ~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (729)
+.. ++.+ ...|..+..---+-|+.....+.. + . .-.--++.+...++.|-.+|-
T Consensus 271 ld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I--------------v----~-----KRk~qYE~~v~~np~nYDsWf 326 (677)
T KOG1915|consen 271 LDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI--------------V----G-----KRKFQYEKEVSKNPYNYDSWF 326 (677)
T ss_pred HHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH--------------h----h-----hhhhHHHHHHHhCCCCchHHH
Confidence 332 1111 111211111111111111111000 0 0 001124555566655777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H------hHHHHHHHH---hhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDC-A------TYSAFVLGK---CKLCNYEDALRVFRQVSAQSLVLDSISYS 481 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (729)
..+......|+.+...++|++...+ ++|-. . .|..+=.+| ....+++.+.++++..++. ++....||.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 7777777778888888888888765 33321 1 111111122 2457788888888888774 333444444
Q ss_pred HHH----HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 004813 482 KLV----EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL 557 (729)
Q Consensus 482 ~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 557 (729)
-+- ..-.+..++..|.+++..++. .-|...+|...|..-.+.++++....+|++.++-+ +-+..+|......-
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 433 333467788888888888764 46888888888888888888888888888888775 45677887777777
Q ss_pred HhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccC
Q 004813 558 VKLQRAKDLLVVLAQMLVEG-CALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA-----DGS 631 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g 631 (729)
...|+.+.|..+|.-.++.. .......|...|+.-...|.+++|..+|+++++. .+...+|.++..--. ..+
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccc
Confidence 78888888888888877652 2223456777777777888888898888888875 233345555544322 223
Q ss_pred -----------ChHHHHHHHHHHHh
Q 004813 632 -----------QLHLVSSGINKLVS 645 (729)
Q Consensus 632 -----------~~~~A~~~~~~~~~ 645 (729)
+...|.++|+++..
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHH
Confidence 45567777776654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-11 Score=117.15 Aligned_cols=466 Identities=10% Similarity=0.037 Sum_probs=316.1
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
.+++.+.|..+|+++...+ ..+...|-..+..=.+++.+..|..++++.+..- |--...|...+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 4678899999999998765 4556678888888999999999999999998764 445667777777777899999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
++|++..+ ..|+...|++.+..-.+. ...+.|..++++.+- +.|++.+|--....=.+.|+...|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRy-keieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRY-KEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999977 479999999999999999 999999999999986 4799999999888888999999999999998774
Q ss_pred -CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 004813 232 -GC-CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE-LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL 308 (729)
Q Consensus 232 -~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 308 (729)
|- .-+...+.+....-.++..++.|.-+|.-..+.-+... ...|..+...--+.|+.....+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I------------- 303 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI------------- 303 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH-------------
Confidence 21 11122333333333456678888888877776422110 112222222111222221111110
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCC
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGK 388 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~ 388 (729)
++ +-.--|+++++.+ +-|-.++-.. ++.....|+
T Consensus 304 v~--------------KRk~qYE~~v~~n-p~nYDsWfdy-------------------------------lrL~e~~g~ 337 (677)
T KOG1915|consen 304 VG--------------KRKFQYEKEVSKN-PYNYDSWFDY-------------------------------LRLEESVGD 337 (677)
T ss_pred hh--------------hhhhHHHHHHHhC-CCCchHHHHH-------------------------------HHHHHhcCC
Confidence 00 0001134444432 3455666333 344444455
Q ss_pred hhHHHHHHHHHHhCCCC--CcccchHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh----h
Q 004813 389 FFLAKCILEKMADRKIA--DCDSWNIPIRW--------LCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC----K 454 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~----~ 454 (729)
.+...++|++....-++ ....|.-.|.. -....+.+.+.++|...++. ++-..+||..+--.|+ +
T Consensus 338 ~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHH
Confidence 55555555555554443 22222222211 12356788888888888774 3445566665544443 5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
+.++..|.+++...+. ..|-..+|...|..=.+.+++|.+..++++.++.+ +-+..+|......-...|+.+.|..+
T Consensus 417 q~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 6788889988887764 46777888888888888899999999999998865 44777888887777888999999999
Q ss_pred HHHHHHcC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------C
Q 004813 535 RSLAYSSG-TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-----EQN-----------K 597 (729)
Q Consensus 535 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~-----------~ 597 (729)
|+.+.+.. +......|.+.|+--...|.++.|..+|+.+++. .+...+|.++...-. ..+ +
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 99888643 2223456667777777889999999999999886 344556666554333 233 4
Q ss_pred HHHHHHHHHHHHH
Q 004813 598 LKDCALFFNVMVK 610 (729)
Q Consensus 598 ~~~A~~~~~~~~~ 610 (729)
...|..+|++...
T Consensus 572 ~~~AR~iferAn~ 584 (677)
T KOG1915|consen 572 IKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHH
Confidence 5567777776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-14 Score=145.00 Aligned_cols=577 Identities=13% Similarity=0.034 Sum_probs=337.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHh
Q 004813 89 QKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDV 168 (729)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 168 (729)
..|..|+..+|..++.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|.+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3567888899999999999999999998 8888888888888999999999998888887775 688899
Q ss_pred HHHHHHHHHhcCCChhHHHHH---HHHHH----HCCCCCC-HHHH-------------HHHHHHHHhcCCHHHHHHHHHH
Q 004813 169 FNVVLGAIVEEKRGFADFVFV---YKEMV----KAGIVPN-VDTL-------------NYLLEVLFETNRIESALDQFRR 227 (729)
Q Consensus 169 ~~~ll~~~~~~~~~~~~a~~~---~~~~~----~~g~~~~-~~~~-------------~~li~~~~~~~~~~~A~~~~~~ 227 (729)
|..|+.+|.+. ||......+ ++.+. ..|+.-. ...+ ...+......|-++.+++++..
T Consensus 86 yt~Ll~ayr~h-GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 86 YTNLLKAYRIH-GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 887653332 22222 2232111 1111 1223334445666666666665
Q ss_pred HHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 228 MHKKG-CCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD 306 (729)
Q Consensus 228 m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 306 (729)
+.... ..|.. ..++-+.. +..-.+++........-.|+..+|..+++.-.-.|+++.|..++.+|++.|++.+
T Consensus 165 ~Pvsa~~~p~~----vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 165 VPVSAWNAPFQ----VFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CCcccccchHH----HHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 54321 11111 12433332 2333444444444332258999999999999999999999999999999999878
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhc
Q 004813 307 ELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNA 386 (729)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~ 386 (729)
.+-|..|+-+ .++...++.+++-|.+.|+.|+..|+...+..+...|....+.+............+..+.++....
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 8777777755 7888889999999999999999999998888888755533333322221111111112222211111
Q ss_pred CChh-----HHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHhhcCC
Q 004813 387 GKFF-----LAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS---VVPDCATYSAFVLGKCKLCN 457 (729)
Q Consensus 387 ~~~~-----~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~ 457 (729)
..++ -....+.+..-.|.. ...+|.... -...+|.-++..++...|..-. -..+...|..++.-|.+.-.
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111 111112222222333 223333222 2233677777777766664221 11133345555555544332
Q ss_pred HHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-------CCHHHHHHHHHHHHh
Q 004813 458 YEDALRVFR--QVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK----NGCS-------LSSSSFNILIYGLCV 524 (729)
Q Consensus 458 ~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-------~~~~~~~~l~~~~~~ 524 (729)
......++. +..... .+....-.+.....+. +...+.+-+..+.. +.+. +-...-+.++..+++
T Consensus 395 ~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred hhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 222222221 111110 0011111111111110 11111111111111 0011 111233556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE--GCALDVEAYCILIQSMSEQNKLKDCA 602 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~ 602 (729)
.-+..+++..-++....-+ + ..|..|++-+...++.+.|..+.++.... .+..|..-+..+.+.+.+.+....+.
T Consensus 472 e~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 6666666654444333211 2 56788888888888888888888887654 33446666778888888888888888
Q ss_pred HHHHHHHHC-CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 603 LFFNVMVKA-GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 603 ~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+++++.+. -..|+ ..++..++...+..|+.+...++++-+...|+..+ .-++....+.++...|.++.+.-.+
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHH
Confidence 888888774 12222 34455566666778888888888877777665442 3344556677888888888777665
Q ss_pred CCCCCCHHHHHHHHhhhhh
Q 004813 681 KGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 681 ~g~~p~~~~~~~ll~~~~~ 699 (729)
. ++|.......+.+.+.+
T Consensus 625 k-yk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 625 K-YKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred H-hcCChHHHHHHHHHHHh
Confidence 4 67777776666666653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=138.41 Aligned_cols=512 Identities=15% Similarity=0.074 Sum_probs=269.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 117 GLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
.++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.....|+.++.+..+. ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC---------
Confidence 35566777888999999999999999999999998 888887777788888899998888877 7766555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHhH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF-DLGIQLELSFY 275 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 275 (729)
.|-..+|..|..+|...|++.. ++..++ ..-.++..+...|.......++..+. ..+..||...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5778899999999999998766 222222 11122333444444444444443322 2223333322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRALDL-MPDELTYEELINCLCENL-RLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
.+....-.|-++.+++++..+....- .|-.+ .++-+.... .+++-..+.+...+ .|+..+|
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l-------- 207 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETL-------- 207 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHH--------
Confidence 23333444555555555544432210 01111 122222211 12222222222222 3566666
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGR 432 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 432 (729)
.++++.-...|+.+.|..++.+|.+.|.+ +..-|..++-+ .++..-+..+++.
T Consensus 208 -----------------------~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 208 -----------------------HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred -----------------------HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHH
Confidence 66666666667777777777777777776 55555555444 5666666677777
Q ss_pred HHHCCCCCCHHhHHHHHHHHhhcCCHHH------------------------HHHHHHH------------HHhCCCCCC
Q 004813 433 MVVSSVVPDCATYSAFVLGKCKLCNYED------------------------ALRVFRQ------------VSAQSLVLD 476 (729)
Q Consensus 433 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~------------------------a~~~~~~------------~~~~~~~~~ 476 (729)
|.+.|+.|+..|+...+..+...|.... |.+.++. ..-.|+...
T Consensus 262 mqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~ 341 (1088)
T KOG4318|consen 262 MQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDIL 341 (1088)
T ss_pred HHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccc
Confidence 7777777777777665555544222110 1111111 001122222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCCH------HHHHH-------------H
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNG--CSL-SSSSFNILIYGLCVMRKV------DKAIR-------------L 534 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~------~~A~~-------------~ 534 (729)
..+|...+.. ...|.-++..++...+..-- +.+ ++..|..++.-|.+.-+. ..|.+ +
T Consensus 342 ~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~v 420 (1088)
T KOG4318|consen 342 EAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRV 420 (1088)
T ss_pred hHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHH
Confidence 3333333322 22566666666666554311 112 223343333333321110 00000 0
Q ss_pred HHHHHHcCCCCCHH----------------------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 535 RSLAYSSGTSYTTS----------------------------TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC 586 (729)
Q Consensus 535 ~~~~~~~~~~~~~~----------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 586 (729)
-+.+.. ..||.. .-+.++..|++.-+..+++..-++....-+ ...|.
T Consensus 421 sell~~--lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya 495 (1088)
T KOG4318|consen 421 SELLEN--LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYA 495 (1088)
T ss_pred HHHHHH--hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHH
Confidence 000000 011110 112333334444344444433333222111 14566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKA--GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGL 662 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~ 662 (729)
.||+-+......+.|..+.++.... .+..|...+..+.+.+.+.+....+..+++++.+. +.+....+...+.+..
T Consensus 496 ~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~ 575 (1088)
T KOG4318|consen 496 LLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSG 575 (1088)
T ss_pred HHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhh
Confidence 7777777777777777777766543 23445555666777777777777777777777664 2222234455666677
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhh
Q 004813 663 WKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRF 707 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 707 (729)
...|+.+.-.++.+-+...|+.-+ ..++....+.++...+.
T Consensus 576 a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 576 APAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 777777777777776666665432 44445555555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-11 Score=113.26 Aligned_cols=310 Identities=13% Similarity=0.029 Sum_probs=233.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHhhcC
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIA-DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSV--VPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~ 456 (729)
..++....+.+++..-.+.....|.+ +...-+....+.-...++++|+.+|+++.++.+ --|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34455555667777777777777766 444445555566677888899999998887742 126677777765432221
Q ss_pred CH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 457 NY-EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 457 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
.. --|..+++ +.+ + -+.|...+.+.|.-.++.++|..+|+..++.+ +.....|+.+.+-|...++...|++-+
T Consensus 314 kLs~LA~~v~~-idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN-IDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-hcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 11222221 111 2 34577788888999999999999999999865 445678899999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
+.+.+.. +.|-..|-.|.++|.-.+.+.-|+-.|++..+..+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999876 678889999999999999999999999999987554 88999999999999999999999999999864 33
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD--SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+...+..|...|.+.++.++|.+.+++.++. |...+ ....--|..-+.+.+++++|..+....... .+.-.-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6688999999999999999999999888774 33333 223334778888999999999888777653 677677
Q ss_pred HHHHHhhhhhc
Q 004813 690 HGLLVGSSVGE 700 (729)
Q Consensus 690 ~~~ll~~~~~~ 700 (729)
-+.|++.+++.
T Consensus 543 ak~LlReir~~ 553 (559)
T KOG1155|consen 543 AKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHh
Confidence 78888777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-12 Score=131.68 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=197.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHH
Q 004813 384 CNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALR 463 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 463 (729)
...|+++.|.+.+.+..+..+.+...+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45688888888888776665434444455566677788999999999888765323222233334666778888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 004813 464 VFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFN-ILIYGL---CVMRKVDKAIRLRSLAY 539 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~A~~~~~~~~ 539 (729)
.++.+.+..+. ++..+..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99988887654 6677888888888999999999999998887643 333221 111111 22222233333444444
Q ss_pred HcCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 540 SSGT---SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY-CILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 540 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
+... +.+...+..+...+...|+.++|.+.+++..+..+......+ ..........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 4321 236778888888888999999999999988886433221111 11112223457778888888887764 34
Q ss_pred C-H--HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 616 D-R--ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 616 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+ . ....++.+.|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 3 456688888889999999999998544333467888888899999999999999988887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-09 Score=104.26 Aligned_cols=551 Identities=10% Similarity=0.056 Sum_probs=295.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
++.+..+++.......|+.+...-+.......|...+...-..+-++-+.++|++.++.. +..-.--+..++..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccc
Confidence 444556677777777777766553333444566666666666777777777777766543 3335556666677777
Q ss_pred hhhHHHHHHHHHhC------CCcccHHhHHHHHHHHHhcCCChh---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 004813 147 VNGAMRVLVNMNSG------GFKLSVDVFNVVLGAIVEEKRGFA---DFVFVYKEMVKAGIVPN--VDTLNYLLEVLFET 215 (729)
Q Consensus 147 ~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~ 215 (729)
+++|.+.+..+... ..+.+...|..+...+.+. .+.- .+..++..+... -+| ...|.+|.+.|.+.
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence 77777777766321 1134445566666555554 2111 122333333322 233 23577777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 004813 216 NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLF 295 (729)
Q Consensus 216 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (729)
|.++.|.++|++.... .-...-|+.+.++|+.-..-.-+..+ +...+.+..+. ..-+++-.+.-|
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~a~~ 326 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHMARF 326 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHHHHH
Confidence 7777777777776653 22444555555555532211111110 00000111000 011222333333
Q ss_pred HHHHhCC-----------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHccCCh
Q 004813 296 KMMRALD-----------LMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT------DDVFVDIVRGLCEVGKF 358 (729)
Q Consensus 296 ~~m~~~~-----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~ 358 (729)
+.+.... -..++..|..-+. ...|+..+....|.+..+. +.|. ...+..+.+.|...|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3333321 1123334443332 2345566666667666653 2222 12233444444444555
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 004813 359 DESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS- 437 (729)
Q Consensus 359 ~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 437 (729)
+.|+.+|++....+-...+-|.. +|......-.+..+++.|+++++.....-
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~---------------------------vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAE---------------------------VWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHH---------------------------HHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 55555544433333222222222 22222233333444444444444432110
Q ss_pred ----------------CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 438 ----------------VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 438 ----------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
+.-+...|...+..--..|-++....+++.+++..+. ++.........+-...-++++.++++
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0112334555555555667888888899998887665 44443333334445666788888887
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHhcCChhHHHHHHHHHHH
Q 004813 502 CMSKNGCSLSS-SSFNILIYGLCV---MRKVDKAIRLRSLAYSSGTSYTTSTYTKIM--LGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 502 ~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+-+..--.|+. .+|+..+.-+.+ ...++.|..+|+++++ |.+|...-+--|+ ..-...|-...|+.++++...
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 76554323443 356655544432 2468899999999998 5555443222222 222345778888999988765
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCChHHHHHHHHHHHhC-CCC
Q 004813 576 EGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML---SLLHGLADGSQLHLVSSGINKLVSD-SEV 649 (729)
Q Consensus 576 ~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 649 (729)
. +++. ...||+.|.-....=-......+|++.++. -||...-. -+...=.+.|.++.|..++....+. +..
T Consensus 615 ~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 615 A-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 4 3332 346777776544444455667888888874 56654433 3334456789999999999888776 333
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
.+...|++.=..-.++|+-+--.++
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566788888888899994443333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=143.65 Aligned_cols=261 Identities=14% Similarity=0.072 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV 490 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (729)
.+...+.+.|++++|++++++.......|+. ..|..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3355566677777777777554433212333 33333444455567777777777777665443 45555566655 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 491 EKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG-TSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 491 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
+++++|.+++++..+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777666543 2455566666777777777777777777765432 234556666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (729)
+++.++..+. |....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.++|+..+++..+. .+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 7777776433 46666677777777777777777777666542 334455667777777777777777777777765 35
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.|+.....+++++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 567777777777777777777777766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-12 Score=128.20 Aligned_cols=284 Identities=10% Similarity=-0.010 Sum_probs=191.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHhhcCCHHHHHH
Q 004813 386 AGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYS--AFVLGKCKLCNYEDALR 463 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 463 (729)
.|+++.|.+.+....+........|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577887777776655442112222333334446788888888888888764 44443322 23456677888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 464 VFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS-------SSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888877654 6777778888888888888888888888876533222 122233333334445556666666
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 616 (729)
.+.+. .+.++.....+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++++..++..+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 65433 2456777777888888888888888888888774 3344222 2333345588888888888887742 224
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677788888888888888888888875 57777878888888888888888888887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-12 Score=127.35 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=129.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHH
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-------ATYSAFVLGK 452 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~ll~~~ 452 (729)
...+...|+++.|...++++.+..+.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666556666666666666667777777777766665433221 1222223333
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 453 CKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (729)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence 3334455555555555433 2235666666777777777777777777776663 3444222 222333446666666
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 533 RLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.++|++...
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666553 344445566666666666677776666666654 45666666666666666666666666665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-11 Score=116.47 Aligned_cols=285 Identities=10% Similarity=-0.036 Sum_probs=204.1
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+.-+. ...+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHH
Confidence 3344444555666778888888888877664 334455555566777788877777777777765433 66677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDL 566 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 566 (729)
|...|+..+|.++|.+..... +-=...|-.+.+.|+-.|..++|+..+..+-+.- +-...-+--+..-|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 777888888888888887642 2235678888888888888888888887776542 11111222344557778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHhccCChHHHHHHH
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA--GL---VP-DRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..+.. .+ .+ -..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 8888887765333 6666666666666678888888888877632 11 11 2346788888999999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhh
Q 004813 641 NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
++.... .+.+..++.+++-.|...|+++.|.+.|.+.+. +.||..+...+++.+..
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 998887 677888999999999999999999999998885 68988888777776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-10 Score=110.08 Aligned_cols=309 Identities=13% Similarity=0.116 Sum_probs=162.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHccCC
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGL--TPTDDVFVDIVRGLCEVGK 357 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~ 357 (729)
.++-...+.+++..-.......|...+...-+....+.....++++|+.+|+++.+... ..|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556666666666666666544444444444455566677777777777766521 1133444322211111000
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 358 FDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 358 ~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
+. -.|..++ .+.+- -+.|...+.+-|.-.++.++|...|++.++.+
T Consensus 315 Ls------------------------------~LA~~v~-~idKy---R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 315 LS------------------------------YLAQNVS-NIDKY---RPETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred HH------------------------------HHHHHHH-HhccC---CccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 00 0011111 01111 34455555666666666666666666665554
Q ss_pred CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 438 VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 438 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
+. ....|+.+.+-|...++...|.+-++..++-.+. |-..|-.|.++|.-.+...=|+-+|++..+-. +.|...|.+
T Consensus 361 p~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~a 437 (559)
T KOG1155|consen 361 PK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVA 437 (559)
T ss_pred cc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHH
Confidence 22 3445566666666666666666666666665443 55666666666666666666666666666532 335666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQS 591 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~ 591 (729)
|.++|.+.++.++|++.|......| ..+...+..|.+.|-+.++.++|...|++.++. |..-+ ...-..|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 6666666666666666666666554 334456666666666666666666666655542 22211 1122223444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
+.+.+++++|..+...... | .+...--..|++.+.
T Consensus 517 f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlReir 551 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLK-G-ETECEEAKALLREIR 551 (559)
T ss_pred HHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHHH
Confidence 5566666666655544443 1 334444444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=116.11 Aligned_cols=428 Identities=10% Similarity=0.045 Sum_probs=234.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH
Q 004813 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPN-SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE-LSFYTCIIPMLC 283 (729)
Q Consensus 206 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 283 (729)
-...+-|.+.|++++|++.|.+.++. .|| +.-|.....+|...|+|+++.+.-....+. .|+ +..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455678889999999999998874 577 777888888888899999988877777764 343 334555566677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-cC--CCCCHHhHHHHHHHHHccCChHH
Q 004813 284 RENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV-IG--LTPTDDVFVDIVRGLCEVGKFDE 360 (729)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~--~~p~~~~~~~l~~~~~~~~~~~~ 360 (729)
..|++++|+.=..-..-.+--.|..+- .++.-..+ ..|..-.++-.+ .+ +.|......+....+...-..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~-- 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP-- 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc--
Confidence 777777776432222111110111111 11111111 111111111111 11 334443333333322110000
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHH----h-cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 361 SVNFLEDKCGYVTSPHNALLECCC----N-AGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV 435 (729)
Q Consensus 361 a~~~l~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 435 (729)
............+..++. . ...+..|.+.+.+-...... ...+ +..+.-. +.|
T Consensus 268 ------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~-~~~~----------n~~d~~l---e~~-- 325 (606)
T KOG0547|consen 268 ------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSES-SLSV----------NEIDAEL---EYM-- 325 (606)
T ss_pred ------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhh-hccc----------cccchhH---HHH--
Confidence 000000000011111110 0 01122222222221110000 0000 0000000 000
Q ss_pred CCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004813 436 SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF 515 (729)
Q Consensus 436 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 515 (729)
..+.......+.-.|+.-.+..-|+..+.....++ ..|--+...|...++.++....|.+....+ +-++.+|
T Consensus 326 ------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvY 397 (606)
T KOG0547|consen 326 ------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVY 397 (606)
T ss_pred ------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchh
Confidence 11111111223345677777777777777654432 225566666777788888888888877754 4466677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..-.+.+.-.+++++|..-|++..... +.+...|--+.-+..+.++++++...|++.+++ +.--+..|+.....+...
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH
Confidence 777777777778888888888877654 344556666666667777888888888887776 333566777778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------HHHH--HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 004813 596 NKLKDCALFFNVMVKAGLVPD-------RETM--LSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 666 (729)
+++++|.+.|+..++. .|+ ...+ -.++ .+.-.+++..|.+++++.++.+ +.....|.+|+....+.|
T Consensus 476 qqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHh
Confidence 8888888888887763 332 1111 1111 1223478888888888888762 334457888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 004813 667 LTSQASYLLDLMLG 680 (729)
Q Consensus 667 ~~~~A~~~~~~~~~ 680 (729)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888887664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=139.96 Aligned_cols=227 Identities=13% Similarity=0.075 Sum_probs=75.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+.......++++.|...++++...+..+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.+
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 3344444445555555555555555444344444444444 4555666666655554433 234444555555566666
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
+++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++..+.. +.|......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 6666666666654322 23355555566666666666666666666666542 223555556666666666666665555
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+...+.. +.|+..+..+..++...|++++|+..|++..+..+. |......+.+++...|+.++|.++..++.
T Consensus 204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5555443 334444555566666666666666666665554322 55555556666666666666666555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-13 Score=130.52 Aligned_cols=283 Identities=12% Similarity=0.013 Sum_probs=196.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHhhcCCHHHHHHHH
Q 004813 388 KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS--VVPDCATYSAFVLGKCKLCNYEDALRVF 465 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 465 (729)
+..+|...|.++...-.........+..+|...+++++|.++|+.+.+.. ..-+..+|.+.++.+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777877555544344555667777888888888888888876653 12256677777765432 1222222
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004813 466 -RQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT 543 (729)
Q Consensus 466 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 543 (729)
+++.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+.+-+....++|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332 236778888888888888888888888888775 34 66777777777777888888888888876432
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSL 623 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (729)
.-+-.+|--+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.++|+++++++...... |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 122234455667788888888888888888876655 6667777777888888888888888888875433 33344445
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 624 LHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+..+...+++++|+..++++.+. .+.+...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55666678888888888888886 5666677788888888888888888777777653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-12 Score=128.04 Aligned_cols=287 Identities=8% Similarity=-0.071 Sum_probs=213.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 418 CENEEIRKAYELLGRMVVSSVVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
...|+++.|.+.+.+..+.. |+. ..+-....+..+.|+++.|.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998887653 443 334444667788899999999999988764333333444457888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH-HHHHHH---HhcCChhHHHHHHHH
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT-KIMLGL---VKLQRAKDLLVVLAQ 572 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~A~~~~~~ 572 (729)
...++.+.+.. +-+..+...+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 456778889999999999999999999999998743 333231 111221 222333334445555
Q ss_pred HHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 573 MLVEGCA---LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRET---MLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 573 ~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+.+..+. .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5554221 37888889999999999999999999999985 444432 112222234457889999999998887
Q ss_pred CCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 647 SEVLDS--SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 647 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
.+.|+ ....++++.+.+.|+|++|.+.|+........||...+..+...+.+.|+.+++..+-+
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566 67889999999999999999999954443457999999999999999999998876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-11 Score=109.53 Aligned_cols=293 Identities=14% Similarity=0.056 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.++.++|.++|-+|.+.+. -+..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. |+..-+.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl------------ 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLAL------------ 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHH------------
Confidence 3456666666666655321 12233344555566666666666666666543 222 121111111
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-- 442 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 442 (729)
..|..-|...|-++.|+.+|..+.+.+..-......|+..|-+..++++|+++-+++.+.+..+..
T Consensus 111 ------------~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 111 ------------QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred ------------HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 344555666666666666666666554434445566677777777777777777777666544332
Q ss_pred --HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 443 --ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 443 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
..|.-+...+....+.+.|...+....+.+.+ .+..--.+.+.....|++..|.+.++.+.+.+..--..+...|..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 23455555555667788888888888776544 444445667777888888888888888887654334556777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCC
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE---QNK 597 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~ 597 (729)
+|.+.|+.++....+..+.+.. ++...-..+........-.+.|..++.+-+.. +|+...+..+|+.-.. .|.
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888887764 44444444444445555567777776666665 6788888888876543 344
Q ss_pred HHHHHHHHHHHHHC
Q 004813 598 LKDCALFFNVMVKA 611 (729)
Q Consensus 598 ~~~A~~~~~~~~~~ 611 (729)
..+-+.++.+|+..
T Consensus 334 ~k~sL~~lr~mvge 347 (389)
T COG2956 334 AKESLDLLRDMVGE 347 (389)
T ss_pred hhhhHHHHHHHHHH
Confidence 55566666666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-11 Score=108.01 Aligned_cols=290 Identities=14% Similarity=0.063 Sum_probs=189.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLEL------SFYTCIIPMLCRENKL 288 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 288 (729)
+++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++++.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356677777777777642 113334455667777777777777777777763 332 2344566778888899
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhh
Q 004813 289 EEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDK 368 (729)
Q Consensus 289 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 368 (729)
|.|+.+|..+.+.+. --......|+..|-...+|++|+++-+++.+.+-.+...-. ..-
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aqf----------------- 182 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQF----------------- 182 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HHH-----------------
Confidence 999999988887542 23456777888999999999999999888876543332211 111
Q ss_pred cCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 004813 369 CGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAF 448 (729)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 448 (729)
|..|...+....+.+.|..++.+..+.++.++..--.+.+.+...|++++|.+.++...+.++.--+.+...|
T Consensus 183 -------yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 183 -------YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -------HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1445555556667777777777777776666666667777777788888888888887777555555666777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 004813 449 VLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV---M 525 (729)
Q Consensus 449 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 525 (729)
..+|.+.|+.++....+..+.+... ....-..+.+.-....-.+.|..++.+-..+ +|+...+..+++.-.. .
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc
Confidence 7788888888888888877776533 2223333333333444455666555555544 5777777777776543 3
Q ss_pred CCHHHHHHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYS 540 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~ 540 (729)
|...+...+++.|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 344555555555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-08 Score=98.79 Aligned_cols=532 Identities=9% Similarity=0.026 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLL 209 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 209 (729)
+..|..-+.....+|++..-...|++.... .+.-....|...+...-.. +-++-+.+++++..+. +...-+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 357777888888999999999999988543 3334456688888877777 8889999999999874 333467778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCC--HHhHHHH
Q 004813 210 EVLFETNRIESALDQFRRMHKK------GCCPNSRTFEIVIKGLIANSRV---DDSVSILGEMFDLGIQLE--LSFYTCI 278 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~--~~~~~~l 278 (729)
..+++.+++++|.+.+...... ..+.+...|..+....++.-+. -....+++.+... -+| ...|++|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 8899999999999999887642 1233455666666665554332 2344455555432 233 4578999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH--HcCCCCCHHhHHHHHHHHHcc-
Q 004813 279 IPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI--VIGLTPTDDVFVDIVRGLCEV- 355 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~~~~~l~~~~~~~- 355 (729)
.+.|.+.|.+++|..+|++....- -+..-|+.+..+|+.-....-+..+ + +. +.+-.-+.......+..+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHHHHHHHHHHHH
Confidence 999999999999999998877642 3444566666666543222111111 1 11 111111111111111111000
Q ss_pred -CChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----CcccchHHHHHHHhcCCHHHHHH
Q 004813 356 -GKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR-KIA-----DCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 356 -~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+..--.-.++-...+.++..|.. +.-+..|+..+-...+.+.... ++. ....|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 00000001111111111111211 1222345566666666665443 221 34467788888888999999999
Q ss_pred HHHHHHHCCCCCC---HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHH
Q 004813 429 LLGRMVVSSVVPD---CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-----------------LDSISYSKLVEGLC 488 (729)
Q Consensus 429 ~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~ 488 (729)
+|++..+...+-- ..+|..-...=.+..+++.|.++++......-. .+...|+.+++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998876532211 234444444445667788888888776532111 13345666777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc---CChh
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKL---QRAK 564 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~ 564 (729)
..|-++....+++++....+. ++.+.-.....+-.+.-++++.++|++-...-..|+. ..|+..+.-+.+. ...+
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 788999999999999876542 3333223333445667789999999887776555665 3677766655442 3689
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCILIQS--MSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.|..+|++.++ |..|...-+-.|+.+ --+.|-...|+.++++.... +.+. ...|+..|.--...=-+..-..++
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 99999999998 565544332222222 23468888899999997653 4443 346777775443333345567788
Q ss_pred HHHHhCCCCCCHHh---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 641 NKLVSDSEVLDSSM---YNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 641 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.++. -|+... .--....-.+.|..+.|..++.---+
T Consensus 646 ekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 646 EKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 888876 344432 33455666788999999888865544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-12 Score=126.78 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHH
Q 004813 288 LEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIG--LTPTDDVFVDIVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 288 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~l 365 (729)
..+|...|..+.++- .-+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----------- 402 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----------- 402 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----------
Confidence 466666666644432 1223444556666777777777777777766532 11134445333332211
Q ss_pred HhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 004813 366 EDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATY 445 (729)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 445 (729)
.-+---+-+.+.+.++..+.+|.++..+|.-+++.+.|++.|++..+.+.. ...+|
T Consensus 403 -----------------------~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYay 458 (638)
T KOG1126|consen 403 -----------------------EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAY 458 (638)
T ss_pred -----------------------hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhh
Confidence 001111222333444446777777777777777888888877777665321 56677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 446 SAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSK---LVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 446 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
+.+.+-+.....+|.|...|+..+.. |+..|++ +...|.+.++++.|+-.|+++.+.+ +.+.+....+...+
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 77777777777788888887776654 4444443 5666777888888888888877754 34556666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCA 602 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 602 (729)
.+.|+.++|+++++++...+ +.|+..--..+..+...+++++|+..++++.+.-+. +...|..+...|.+.|+.+.|+
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHH
Confidence 77788888888888877765 344444444556666777888888888887775222 4556667777788888888888
Q ss_pred HHHHHHHHC
Q 004813 603 LFFNVMVKA 611 (729)
Q Consensus 603 ~~~~~~~~~ 611 (729)
.-|.-+.+.
T Consensus 612 ~~f~~A~~l 620 (638)
T KOG1126|consen 612 LHFSWALDL 620 (638)
T ss_pred HhhHHHhcC
Confidence 777777764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-10 Score=108.61 Aligned_cols=299 Identities=13% Similarity=0.033 Sum_probs=213.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.|+|..|.++..+-.+.+-.| ...|..-..+.-+.||.+.+-.++.+..+....++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876665332 3455556667777888888888888888765567777788888888888999999888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
.+++.+.+. .+.........+|.+.|++.....++.++.+.|.-.+...-..=-.+
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a----------------------- 231 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA----------------------- 231 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH-----------------------
Confidence 888887764 45667788888999999999999999999988876554432111111
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
|+.+++-....+..+.-...++.....--.++..-..++.-+.+.|+.++|.++..+..+++..|+ . .....+.+
T Consensus 232 -~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~ 306 (400)
T COG3071 232 -WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLR 306 (400)
T ss_pred -HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcC
Confidence 134444333344444444455555443322566677777888888888888888888888766655 2 22334566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
.++...-++..+.-.+.... ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHH
Confidence 77777777777666654333 5578888888888888999999988877775 68888888888888888888888888
Q ss_pred HHHHHHcCCCCC
Q 004813 535 RSLAYSSGTSYT 546 (729)
Q Consensus 535 ~~~~~~~~~~~~ 546 (729)
+++....-.+|+
T Consensus 384 r~e~L~~~~~~~ 395 (400)
T COG3071 384 RREALLLTRQPN 395 (400)
T ss_pred HHHHHHHhcCCC
Confidence 887765443443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-09 Score=109.14 Aligned_cols=531 Identities=12% Similarity=0.078 Sum_probs=298.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC--C-cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGG--F-KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLE 210 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 210 (729)
+..+.+.|.+.|-+..|++.+..+.... + ......-..++.-+.+ -.++.+.++++.|...++..|..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~--lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGS--LSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3446677778888888887777663210 0 0000001122333333 568888999999988888878777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-C----------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH------------HHCC
Q 004813 211 VLFETNRIESALDQFRRMHKK-G----------CCPNSRTFEIVIKGLIANSRVDDSVSILGEM------------FDLG 267 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~-~----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~------------~~~~ 267 (729)
-|...=-.+..+++|+..+.- | +.-|+...-..|.+.++.|++.+.+++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777666667777777776542 2 3456666667889999999999888876642 1211
Q ss_pred ---------------CCCCHHhH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHH
Q 004813 268 ---------------IQLELSFY------TCIIPMLCRENKLEEAIRLFKMMRALDLM-----------PDELTYEELIN 315 (729)
Q Consensus 268 ---------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~ 315 (729)
+.+|...| -..|..|...=+....-.+...+.+-++. .....-..|+.
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 11122222 11233333322222221122122111110 01112334566
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhc------------CCCCC---------
Q 004813 316 CLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKC------------GYVTS--------- 374 (729)
Q Consensus 316 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~------------~~~~~--------- 374 (729)
-.-+.++..--..+++.....|. .|..+++.+.+.|...++-.+- ++++.. ..++.
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 77788888888888888888886 4788888888888766542221 111100 11111
Q ss_pred --------------CchHHHHHHHhcCChhHHH-----------HHHHHHHhCCCC---CcccchHHHHHHHhcCCHHHH
Q 004813 375 --------------PHNALLECCCNAGKFFLAK-----------CILEKMADRKIA---DCDSWNIPIRWLCENEEIRKA 426 (729)
Q Consensus 375 --------------~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 426 (729)
.+....+.+.+..+.+.-. .+.++....+++ |+...+.-+.++...+-+.+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 0122223333333332222 334444444444 566667778888888888888
Q ss_pred HHHHHHHHHCC--CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-----------------------CCCHHHHH
Q 004813 427 YELLGRMVVSS--VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSL-----------------------VLDSISYS 481 (729)
Q Consensus 427 ~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~ 481 (729)
++++++..-.. +.-+...-+.++-...+ -+.....++.+++...+. ..+....+
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88888875332 11111112222222222 122233333333322110 11222222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.|+. ..+.++.|.++-++. ..+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|
T Consensus 1083 VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcC
Confidence 2222 123444444433332 2355677777777777777777665544 245667777777778888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
.|++-.+++....++.-.|.+.+ .|+-+|++.++..+..+++ .-||......+.+-|...|.++.|.-++.
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 88887777776666655554443 5677777777776655443 34666666677777777777777666554
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+...|.-|...+...|++..|...-.+. .+..||..+.-+|...+...-|+..
T Consensus 1219 ---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiC 1271 (1666)
T KOG0985|consen 1219 ---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQIC 1271 (1666)
T ss_pred ---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhc
Confidence 3344777777888888887776554333 4567888888888888777776655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-10 Score=102.78 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC-ILIQSMSEQNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~ 600 (729)
+.-..++++.+..++.+..--...|...+| +..+++..|++.+|+++|-.+....++ |..+|. .|.++|.+.+.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 333344444444444444333223333332 344455555555555555444332222 333332 23344445555554
Q ss_pred HHHHH
Q 004813 601 CALFF 605 (729)
Q Consensus 601 A~~~~ 605 (729)
|.+++
T Consensus 447 AW~~~ 451 (557)
T KOG3785|consen 447 AWDMM 451 (557)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=108.77 Aligned_cols=287 Identities=11% Similarity=0.019 Sum_probs=176.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
.|++..|+++..+-.+.+-.| ...|..-..+-.+.|+.+.+-.++.+.-+..-.++....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~------------------- 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE------------------- 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH-------------------
Confidence 455555555555544443211 223334444455555555555555555543111222222
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC-- 442 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 442 (729)
-+..+.....|+++.|..-+.++.+.++.++.......++|.+.|++.....++..+.+.|.-.+.
T Consensus 157 ------------ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 157 ------------LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred ------------HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 233334444555555555555555555445555555556666666666666666666555543332
Q ss_pred -----HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 443 -----ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 443 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
.+|..++.-....+..+.-...|+..... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|+. .
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 45666777666666666666777776544 3446667778888888889999999988888887655551 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
..-.+.+-++.+.-++..+...+.. +.++..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|+.+.+++.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 2223455667666666666655443 344567778888888888888888888877665 6788888888888888888
Q ss_pred HHHHHHHHHHHHHC
Q 004813 598 LKDCALFFNVMVKA 611 (729)
Q Consensus 598 ~~~A~~~~~~~~~~ 611 (729)
..+|.+.+++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888776643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-09 Score=106.59 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=143.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
-|..+...|+..+-..+=.++.+..|....+|-++.--|.-.|+..+|.+.|.+....+.. =...|..+.+.|.-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH
Confidence 3445555666555555556666666656667777777776677777777777665443211 123566666666677777
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 459 EDALRVFRQVSAQ--SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 459 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
|+|...+....+. |.. -+..| +.--|.+.+++..|.++|.++.... +-|+.+.+-+.-.....+.+.+|..+|+
T Consensus 363 dQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 7777666655543 111 11122 3334556677777777777776542 3455566666655566667777777776
Q ss_pred HHHHcC------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 537 LAYSSG------TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 537 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..+..- ...-..+++.|..+|.+.+.+++|+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+.+.
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 655210 0112345666667777777777777777777666444 666677777777777777777777776664
Q ss_pred CCCCCCHHHHHHHHH
Q 004813 611 AGLVPDRETMLSLLH 625 (729)
Q Consensus 611 ~~~~p~~~~~~~l~~ 625 (729)
+.|+..+-..++.
T Consensus 518 --l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 --LKPDNIFISELLK 530 (611)
T ss_pred --cCCccHHHHHHHH
Confidence 5666555444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-10 Score=111.13 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccc-HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSGGFKLS-VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN-VDTLNYLLEV 211 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 211 (729)
+-....-|.+.|++++|+++|.+.++. .|+ +..|...-.+|... |+++.+.+.-.+.++. .|+ +..+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~l-gd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESL-GDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHH-hhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 334456677888888888888888774 566 55666666667777 8888888877777764 344 3345555556
Q ss_pred HHhcCCHHHHH
Q 004813 212 LFETNRIESAL 222 (729)
Q Consensus 212 ~~~~~~~~~A~ 222 (729)
+-..|++++|+
T Consensus 193 ~E~lg~~~eal 203 (606)
T KOG0547|consen 193 HEQLGKFDEAL 203 (606)
T ss_pred HHhhccHHHHH
Confidence 66666666654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-08 Score=93.80 Aligned_cols=278 Identities=12% Similarity=0.069 Sum_probs=160.6
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 70 LDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 70 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
+...+++..|..+++.....+. .....+-..+...+.+.|++++|...|.-+.... .++...+..|.-++.-.|.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 4456778888888887654321 1222344556777889999999999999887765 6677788888888888899999
Q ss_pred HHHHHHHHHhCCCcccHHhH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVF-NVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
|..+-.+. |+.... ..++...-+. ++-++-...-+.+.+. ...--+|.......-.+.+|++++.+.
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 98887665 333333 3444444555 7666666655555432 222334444444445678999999988
Q ss_pred HhCCCCCChhhHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004813 229 HKKGCCPNSRTFEIVI-KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDE 307 (729)
Q Consensus 229 ~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 307 (729)
... .|+-...|.-+ -+|.+..-++-+.++++-.... ++.++...|..+....|.=.-..|..-..++.+.+- ..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~--~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID--QE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc--cc
Confidence 765 24544555433 3556777788888888777653 323444555544444443222233333344443321 11
Q ss_pred hhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCC
Q 004813 308 LTYEELINCLCEN-----LRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVT 373 (729)
Q Consensus 308 ~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~ 373 (729)
|. .+.-.++. .+-+.|++++--+.+. .|... ..++--|.+.+++++|..+.++..+..+
T Consensus 253 --~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP 316 (557)
T KOG3785|consen 253 --YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTP 316 (557)
T ss_pred --ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCCCCh
Confidence 11 12222222 2346677776665542 23222 2233445666677777666666554444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-08 Score=96.54 Aligned_cols=429 Identities=12% Similarity=0.046 Sum_probs=204.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
+++...+...+.+.+. .+-...+.....-.+...|+.++|.+..+.-....+. +.+.|+.+.-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5566666666666552 2333444444444455567777777776665554322 4556666665566667777777777
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIG-LT 339 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~ 339 (729)
......+. .|..++.-+.-.-+..++++..........+... .....|..+..++.-.|+...|..++++..+.. -.
T Consensus 99 ~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77766442 4555666666666667777777776666665431 234456667777777788888888887777654 24
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 340 PTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 340 p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
|+...+......+- -.....+.|..+.|.+.+......-+.....-..-...+.+
T Consensus 177 ~s~~~~e~se~~Ly-------------------------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 177 PSKEDYEHSELLLY-------------------------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred CCHHHHHHHHHHHH-------------------------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 55555432211110 01112233334444433333222211112222233444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC-KLCNYEDAL-RVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAV 497 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 497 (729)
.+++++|..++..++.. .||..-|...+..+. +-.+.-++. .+|....+.-....... ..=++......-.+..-
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHH
Confidence 56666666666666554 444444444333222 222222222 44443333211100000 00011111111222333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcC----------CCCCHHhH--HHHHHHHHhcC
Q 004813 498 EVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAY----SSG----------TSYTTSTY--TKIMLGLVKLQ 561 (729)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~~ 561 (729)
.++..+.+.|+++-.....+ .|-.....+-..++.-.+. ..| -+|.+..| -.++..+-+.|
T Consensus 309 kyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 44445555554332222221 1211111110111111110 000 13333333 33445566667
Q ss_pred ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDV-EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
+++.|+.+++..+.. .|+. ..|..-.+.+...|++++|..++++..+... ||...-.--..-..+.++.++|.++.
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHH
Confidence 777777776666654 4443 2344445566666777777777766665431 23333223444445666667777666
Q ss_pred HHHHhCC
Q 004813 641 NKLVSDS 647 (729)
Q Consensus 641 ~~~~~~~ 647 (729)
......|
T Consensus 463 skFTr~~ 469 (700)
T KOG1156|consen 463 SKFTREG 469 (700)
T ss_pred HHhhhcc
Confidence 6666553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-08 Score=97.55 Aligned_cols=456 Identities=12% Similarity=0.074 Sum_probs=277.5
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+++...+++.+.+.+.. +....+.....-.+...|+-++|......-...+ .-+...|..+.-.+....++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 4577888888888887743 4344455545555777899999999888887765 445678888888888888999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..|..+...+ +.+...+.-+--.-.+. |+++.......++.+.. +.....|..+.-++.-.|+...|..++++..+.
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998764 45556666555455555 78888888887777753 335667888888888889999999999998775
Q ss_pred C-CCCChhhHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004813 232 G-CCPNSRTFEIVI------KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLM 304 (729)
Q Consensus 232 ~-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 304 (729)
. -.|+...|.... ......|..+.|.+.+..-... +......-..-...+.+.+++++|..+|..+...+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 3 245665554433 2345667777777777655432 21222223344566788899999999999998875
Q ss_pred CCHhhHHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHH
Q 004813 305 PDELTYEELINCLC-ENLRLDDAN-DILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLEC 382 (729)
Q Consensus 305 p~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~ 382 (729)
||...|...+..+. +-.+.-++. .+|....+. .|.......+--......++
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel------------------------ 303 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL------------------------ 303 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh------------------------
Confidence 77777776655444 233333333 555555432 12111110000000000111
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHhH--H
Q 004813 383 CCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV----SS----------VVPDCATY--S 446 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~--~ 446 (729)
.+....++..+.++|++ ..+..+...|-.....+-..++...+.. .| -+|....| .
T Consensus 304 ------~~~vdkyL~~~l~Kg~p--~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 304 ------KEIVDKYLRPLLSKGVP--SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred ------HHHHHHHHHHHhhcCCC--chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 11222333344444432 2222232222221111111111111110 00 13444333 3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004813 447 AFVLGKCKLCNYEDALRVFRQVSAQSLVLD-SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM 525 (729)
Q Consensus 447 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (729)
.+...+-+.|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..++++..+.. .+|..+-..-..-..+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 4566777888999999999888876 333 3345555677888899999999999888764 45555544555666678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHh--------HHH--HHHHHHhcCChhHHHHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTST--------YTK--IMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~--------~~~--l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
++.++|.++.....+.|. +... |-. =..+|.+.|++..|++-|..+.+
T Consensus 453 n~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 888889888888877664 2222 211 12457777777777776665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-08 Score=97.07 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGL 627 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 627 (729)
.|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... +.|+ .....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 44556667788888999988888877653 22566677777788889999999999999887 4565 55778889999
Q ss_pred hccCChHHHHH--HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 628 ADGSQLHLVSS--GINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 628 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+.|+-..|.. ++..+.+. .+.+...|..++..+.+.|+.++|.+.|+...+
T Consensus 729 le~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99998777777 99999988 477889999999999999999999999998776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-09 Score=101.26 Aligned_cols=146 Identities=14% Similarity=0.012 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLA--------QMLVEGCALDVEAYCILIQSMSEQNKL 598 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~ 598 (729)
....+.+++....+........+...++......|+++.|++++. .+.+.+..|-.+ ..+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 356666666666554333334455555666677788888887777 444444444433 3455556666666
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 599 KDCALFFNVMVKA--GLVPDRETMLSL----LHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 599 ~~A~~~~~~~~~~--~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
+.|..++.+.+.- .-.+......++ ...-.+.|+-++|..+++++.+. .++|..+...++.+|++. |.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 6666666655532 111222222222 23334567777777777777776 366777777777777664 445555
Q ss_pred HHHH
Q 004813 673 YLLD 676 (729)
Q Consensus 673 ~~~~ 676 (729)
.+-.
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-07 Score=95.06 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=79.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhc
Q 004813 73 TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKER--------YPNVREALISLVFSFVNH 144 (729)
Q Consensus 73 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 144 (729)
-|+.+.|.+-.+.++ +...|..|.+.|.+.++.+-|.-.+-.|.... ...+...=....-.-...
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 477777766666553 34578888888888887777766555553220 011111112222233467
Q ss_pred CChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 145 YRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQ 224 (729)
Q Consensus 145 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 224 (729)
|.+++|..+|.+-.+. ..+=..|... |.+++|.++-+.--.. . =..||......+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~-g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQ-GMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhc-ccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHH
Confidence 7888888888777553 2333344444 8888888776543221 1 234565666666667778888777
Q ss_pred HHHH
Q 004813 225 FRRM 228 (729)
Q Consensus 225 ~~~m 228 (729)
|++.
T Consensus 881 yEK~ 884 (1416)
T KOG3617|consen 881 YEKA 884 (1416)
T ss_pred HHhc
Confidence 7653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-10 Score=104.44 Aligned_cols=238 Identities=13% Similarity=0.033 Sum_probs=199.6
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS-FNILI 519 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 519 (729)
|..--+.+..+|.+.|-+.+|...++...+. .|-+.||..|-++|.+..+...|+.++.+-.+. .|..+| ..-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 4444467788999999999999999988876 456778888999999999999999999998875 354444 45567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
..+-..++.++|.++|++..+.. +.++.....+...|.-.++++-|+.+|+++++.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888899999999999998875 566777777777888889999999999999999987 8899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
-++.-|++....--.|+ ..+|..+.......||+..|.+.|+-.... -+.+...++.|.-.-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887644454 467888888888999999999999988876 356778999999999999999999999998
Q ss_pred HHhCCCCCCH
Q 004813 678 MLGKGWVPDA 687 (729)
Q Consensus 678 ~~~~g~~p~~ 687 (729)
... +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 876 45664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-10 Score=118.61 Aligned_cols=250 Identities=10% Similarity=-0.028 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKC---------KLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI 493 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 493 (729)
.++|...|++..+..+. +...|..+..++. ..+++++|...+++..+.++. +...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 45666666666654322 2333333333222 224467777778777776544 666677777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 494 TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 573 (729)
++|...|+++.+.+ +.+...+..+..++...|++++|...++++.+.... +...+..++..+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888877753 334556777777777888888888888887776422 2222333444455677778888887777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH
Q 004813 574 LVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR-ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS 652 (729)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (729)
.+....-+...+..+..++...|++++|.+.+.++... .|+. ...+.+...|...| +.|...++.+.+. .....
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~~~ 507 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQRID 507 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhHhh
Confidence 65532223445666677777788888888887776553 3333 23344444555555 4666666666554 11111
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1122245555666777666655 6666543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-10 Score=104.58 Aligned_cols=201 Identities=8% Similarity=-0.050 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556667777777888888888888777653 3346667777777888888888888888877664 344556677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (729)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 788888888888888888764222 234456667778888889999999888888752 224567777888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|...+++..+. .+.+...+..++..+...|+.++|.++.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888876 455667777888888888999999888887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-10 Score=118.39 Aligned_cols=244 Identities=11% Similarity=-0.009 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC---------QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (729)
++.++|...|++..+..+. +...|..+..++. ..+++++|...++++.+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3468899999999987543 4555666655443 2345899999999999864 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999876 445677888899999999999999999999988554 23333344555667899999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC
Q 004813 607 VMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK-GWV 684 (729)
Q Consensus 607 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~ 684 (729)
++.+.. .| +...+..+..++...|+.++|...++++... .+.+...++.+...|...|+ +|...++.+.+. .-.
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 988753 34 3455677888899999999999999998765 34455566777778888884 888888887753 234
Q ss_pred CCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 685 PDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 685 p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
|....+..++.++ .|+.+.+..+
T Consensus 507 ~~~~~~~~~~~~~--~g~~~~~~~~ 529 (553)
T PRK12370 507 DNNPGLLPLVLVA--HGEAIAEKMW 529 (553)
T ss_pred hcCchHHHHHHHH--HhhhHHHHHH
Confidence 5545555555544 4555555555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-08 Score=95.91 Aligned_cols=450 Identities=14% Similarity=0.072 Sum_probs=245.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH--Hh
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML--CR 284 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~ 284 (729)
+=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+.+++|+.+.+.-.. ...+...+ +=.+| .+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yr 91 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYR 91 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHH
Confidence 34566778899999999999998865 44566677777788889999999855543221 01111111 23444 47
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHccCChHHHHH
Q 004813 285 ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDV-FVDIVRGLCEVGKFDESVN 363 (729)
Q Consensus 285 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~ 363 (729)
.++.|+|+..++.... -+..+...-...+.+.|++++|.++|+.+.+++..--..- -..++.+-. .-.+-
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-
Confidence 8999999999883332 2334566666778899999999999999988764321111 111111100 00000
Q ss_pred HHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC------
Q 004813 364 FLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS------ 437 (729)
Q Consensus 364 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 437 (729)
+++........+|..+ ......+...|++.+|+++++.....+
T Consensus 163 ~~q~v~~v~e~syel~-------------------------------yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELL-------------------------------YNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred HHHhccCCCcchHHHH-------------------------------HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 1111111111122111 111223334455555555555441110
Q ss_pred -------CCCCH-HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHccCCHH--HHHHHHHHHH
Q 004813 438 -------VVPDC-ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE---GLCQVEKIT--EAVEVFCCMS 504 (729)
Q Consensus 438 -------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~--~A~~~~~~~~ 504 (729)
+.-+. ..-..+...+...|+.++|..++..+++.... |........+ ++....++- .++..++...
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 00000 11123334555677888888888777776543 4322222221 111111111 1122222111
Q ss_pred HCCC----------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cCChhHHHHHHH
Q 004813 505 KNGC----------SLSSSSF-NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK--LQRAKDLLVVLA 571 (729)
Q Consensus 505 ~~~~----------~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~ 571 (729)
.... .-..... +.++..|. +..+.+.++-..... ..|. ..+..++..+.+ ...+..+.+++.
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1000 0011111 22333332 333444433222211 1222 344455544432 235777888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004813 572 QMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN--------VMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 572 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (729)
...+..+.-...+.-.++......|+++.|++++. .+.+.+..|.. ...+...+.+.++.+.|..++...
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHH
Confidence 77766433334556667777889999999999999 66665555654 445666677777777777777766
Q ss_pred HhC------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 644 VSD------SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 644 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
+.. +..--..++..++..-.+.|+-++|..+++++.+.+ .+|..+...++.++++-+. +.+..++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~-eka~~l~k 515 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP-EKAESLSK 515 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH-HHHHHHhh
Confidence 543 111223355556666678899999999999999853 6888889999999887654 44444444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-09 Score=101.11 Aligned_cols=200 Identities=13% Similarity=0.030 Sum_probs=128.8
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555566666667777777777666654322 45556666666777777777777777766643 3345566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
+...|++++|.+.++++.+.... .....+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776653211 22345555666777777777777777777765332 45566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 601 CALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777765 233455555666667777777777777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-06 Score=92.04 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 004813 75 DLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVL 154 (729)
Q Consensus 75 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 154 (729)
+...|+..|-++.+.+ +.-...|..|...|....+...|...|+...+.+ +.+......+...|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4566666666665543 2224578888888888888888999999888876 667788888999999999999999884
Q ss_pred HHHHhCCCcccHHhHH--HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004813 155 VNMNSGGFKLSVDVFN--VVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKG 232 (729)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 232 (729)
-..-+.. +.....++ .+--.+.+. ++...+..-|+...... +.|...|..++.+|.++|++..|+++|.+...-
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 4432221 11122222 222334455 88888888898888764 347889999999999999999999999887764
Q ss_pred CCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHH
Q 004813 233 CCPNSRTFEIVIK--GLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 233 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 265 (729)
.|+ .+|...-. ..+..|.+.++...+..+..
T Consensus 626 -rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 33333322 33557888888888777653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-06 Score=87.88 Aligned_cols=128 Identities=17% Similarity=0.081 Sum_probs=75.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
|......+.+.++.++|...+.+..+.. +.....|......+...|..++|.+.|......+ +-++.+..++...+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444555556666666666666665532 3344455555555566666666666666665543 2334455666666666
Q ss_pred cCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 560 LQRAKDLLV--VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 560 ~~~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|+..-|.. ++.++.+.++. +...|-.+...+.+.|+.++|.+.|+...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 666555555 66666665544 566666666666666666666666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=104.73 Aligned_cols=291 Identities=14% Similarity=0.047 Sum_probs=177.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh------h
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC------K 454 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~------~ 454 (729)
..+...|++++|++.++.-...-+............+.+.|+.++|..+|..++.. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 34456677777777776644443334455566677777778888888888877776 345555544444333 1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI-TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
..+.+....+++++...-+. ......+.-.+.....+ ..+..++..+..+|++ .+|+.|-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 22456667777777655322 22222221112221222 2345566666666643 344445445554444444455
Q ss_pred HHHHHHHc----C----------CCCCHHhH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 534 LRSLAYSS----G----------TSYTTSTY--TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 534 ~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
++...... + -.|....| .-+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 55444322 1 12333333 44566677888899999998888887433 36677778888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH------hH--HHHHHHHHhcCChh
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS------MY--NILINGLWKEGLTS 669 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 669 (729)
+.+|.+.++........ |...-+..+..+.++|++++|.+++......+..|-.. +| ...+.+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999888888876443 55565666777788899999988888887765322221 33 34677888888888
Q ss_pred HHHHHHHHHHh
Q 004813 670 QASYLLDLMLG 680 (729)
Q Consensus 670 ~A~~~~~~~~~ 680 (729)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=82.14 Aligned_cols=50 Identities=38% Similarity=0.631 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004813 200 PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 200 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 249 (729)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-09 Score=98.01 Aligned_cols=231 Identities=10% Similarity=-0.053 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
--+.+.++|.+.|.+.+|.+.|+.-.+.. |-..||..|-++|.+..+++.|+.++.+-++. .|-.+|+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l------- 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL------- 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-------
Confidence 34667778888888888888887766653 55557777778888888888888888777663 46666651
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
.-..+.+...++.++|.++++...+....++.+...+...|.-.++++-|+..|+++
T Consensus 294 -----------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 344455566667777777777776666556666666666666666777777777777
Q ss_pred HHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004813 434 VVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLD--SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS 511 (729)
Q Consensus 434 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 511 (729)
+..|+. +...|+.+.-+|.-.+++|-++.-|......--.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence 666654 556666666666666666666666666554322222 2234445555555666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
...++.|.-.-.+.|++++|..+++....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 45556655555666666666666665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-09 Score=91.14 Aligned_cols=189 Identities=11% Similarity=-0.054 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN 596 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 596 (729)
.|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445566666666666666666554 333445555556666666666666666666655433 4455555555666666
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLV-PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++..+. .+-.+...-.+.+...+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 666666666666654111 12345555555556666666666666666665 2333445555666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhc
Q 004813 676 DLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 676 ~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
+.....+. ++.......|+.-.+.|+...+..|
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66655543 5666666666666666666555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=80.69 Aligned_cols=49 Identities=41% Similarity=0.747 Sum_probs=29.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 318 (729)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666666666666666665554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-06 Score=87.18 Aligned_cols=515 Identities=16% Similarity=0.088 Sum_probs=240.6
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 70 LDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 70 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
|...|+++.|...|-.+. ..-..+.+...++.|..|..+++.+.++.. ...-|..+...|+..|+++.
T Consensus 716 l~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 556677777777765541 223345556667777777777777766542 23345666677777777777
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
|.++|-+. ..++-.|..|.+. |+++.|.++-++.. |...+...|-+-..-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~-~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKA-GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhcc-ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 77777554 2244456667777 77777766655443 233344444444444444555554444432211
Q ss_pred h----------CC-----------CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 004813 230 K----------KG-----------CCPN--SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCREN 286 (729)
Q Consensus 230 ~----------~~-----------~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (729)
. .| ..|+ ..|...+..-+...|++..|+..|-+..+ |.+-+.+|-..+
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 0 00 0111 23444455555566666666665544433 444455555555
Q ss_pred CHHHHHHHHHHHHhCC------------CCCCHh--------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHH
Q 004813 287 KLEEAIRLFKMMRALD------------LMPDEL--------TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFV 346 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~------------~~p~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 346 (729)
-+++|.++-+.--..+ +--+.. ....-+...+.++.++-|.++-+-..+.. .|. ...
T Consensus 923 lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhl 999 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHL 999 (1636)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chh
Confidence 5555554432110000 000000 00111122233344444444433332221 111 122
Q ss_pred HHHHHHHccCChHHHHHHHHhhcCCCCCC--c-------------------hHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 347 DIVRGLCEVGKFDESVNFLEDKCGYVTSP--H-------------------NALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 347 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~--~-------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
.+..-+...|++++|.+.+-+....+..- | ...+.++....++..|.++-+.-...-
T Consensus 1000 k~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~-- 1077 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDL-- 1077 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhh--
Confidence 33344556677777766554433322210 1 222344455555555555443321111
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHH----------------HH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQ----------------VS 469 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----------------~~ 469 (729)
-...+..-..+-...|++.+|..++-+. -+|+.. ++.|...+-+..|+++-+. ..
T Consensus 1078 l~dv~tgqar~aiee~d~~kae~fllra----nkp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~ 1148 (1636)
T KOG3616|consen 1078 LADVLTGQARGAIEEGDFLKAEGFLLRA----NKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEAL 1148 (1636)
T ss_pred hHHHHhhhhhccccccchhhhhhheeec----CCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHH
Confidence 1122233333334455555555544332 244432 3333344444444443322 12
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------------------CCCCH--HHHHHHHHHHHhcC
Q 004813 470 AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG---------------------CSLSS--SSFNILIYGLCVMR 526 (729)
Q Consensus 470 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~~~~--~~~~~l~~~~~~~~ 526 (729)
+.|-+ .+..|..-..-+-+.|++.+|...+-++-+.. +.++. ....+...++-..|
T Consensus 1149 k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~ 1227 (1636)
T KOG3616|consen 1149 KKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAG 1227 (1636)
T ss_pred hcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhccc
Confidence 22322 33445555555566677766666555542211 11111 22222222333333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH---------------HHHHcCCCCCH---HHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLA---------------QMLVEGCALDV---EAYCIL 588 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------------~~~~~~~~p~~---~~~~~l 588 (729)
..+.|-+++-.+-. -..-|++++....|.+|.++-+ +.++..-+.+. +-....
T Consensus 1228 ~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaa 1298 (1636)
T KOG3616|consen 1228 CHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAA 1298 (1636)
T ss_pred ccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHH
Confidence 33444333222110 1123455555555555554433 33332111111 112234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCChHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH-GLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 644 (729)
++.+...++|++|++ ...+.+++|-..-|..+-. .+.+.|+...|+.++.+--
T Consensus 1299 idl~ien~qwdk~id---tak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~g 1352 (1636)
T KOG3616|consen 1299 IDLMIENDQWDKAID---TAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHG 1352 (1636)
T ss_pred HHHHHhcccHHHHHH---HHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC
Confidence 677788888888764 4555677777666665543 3567888888888776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-08 Score=99.26 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+.+.|-..|++++|++.+++.+++. +..+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 334455556666666666666666553 222445555556666666666666666666655443 555555555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHhccCChHHHHHHHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRE------TM--LSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
|+.++|.+++....+.+..|-.. .| .-...+|.+.|++..|++-|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666655544322211 11 223445666666666665554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-07 Score=89.82 Aligned_cols=386 Identities=11% Similarity=0.045 Sum_probs=175.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
.++.+|+.+|-+-- .-...|..|....+|++|+.+-+.. |.+.-...-.+.++++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 34666666663211 1123456666667777777654321 22211222334455555566665554321
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
.+ +-. -.+.|..|.+.|.+..|.+.-..=.. +..|......+..++.+..-+++|-++|+++.. |
T Consensus 613 ----~s----dgd-~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~ 677 (1636)
T KOG3616|consen 613 ----ES----DGD-GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F 677 (1636)
T ss_pred ----cc----cCc-cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H
Confidence 11 111 12356777777777776654311111 124555666666666666667777777766642 1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC-CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 341 TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS-PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
...+..|.+-.-+.+|+++-.-..+..+. .-......+...|+++.|...|-+... .-.-+.+-..
T Consensus 678 -----dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~ 744 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIG 744 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhh
Confidence 12223333333344444443221111111 012222333444555555544433211 1122333344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
..++.+|+.+++.++.... ...-|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|++..|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 4555555555555554421 22334444555555566666555554321 223345555566666665555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA 579 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 579 (729)
-++.... ......|-.-..-+-.+|++.+|.++|-.+. .|+. -|..|-+.|..++.+++.++---.
T Consensus 814 a~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d--- 879 (1636)
T KOG3616|consen 814 AEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--- 879 (1636)
T ss_pred HHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---
Confidence 5444321 2233334444444445555555555543322 2332 234455555555555544432110
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 580 LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 580 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
.-..|-..+..-|...|++..|.+-|-+.- -|.+-+..|...+-|++|.++.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 011233334444555555555555443322 2333444455555555554444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-05 Score=84.25 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
+..|..+..+-.+.|...+|++-|-+. -|...|.-.++...+.|.|++-.+++....+..-.|...+ .|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 345666667766777777776655432 2566777788888888888888888777777666666554 67777
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
|++.+++.+..+.+ .-|+......+++-|...|.++.|.-+|...
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88888777665554 3467777778888888888888877666544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=102.39 Aligned_cols=237 Identities=15% Similarity=0.058 Sum_probs=166.0
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHC-----C--C
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQ-----SL-VLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKN-----G--C 508 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~ 508 (729)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666777777777777777666543 21 122222 234666788888888888888888652 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS-----GTS-YTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVE---GC 578 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 578 (729)
+.-..+++.|..+|.+.|++++|...++.+.+. +.. |.+ ..++.+...|...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112346777778888999988888877776532 111 222 24566777888899999999998876653 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC-
Q 004813 579 ALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKA-----G-LVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD- 646 (729)
Q Consensus 579 ~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 646 (729)
.++ ..+++.|...|...|++++|.+++++++.. | ..+. ...++.+...|.+.++.++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999988753 1 1222 456778888999999999888888776543
Q ss_pred -----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 647 -----SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 647 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+.+....+|..|+..|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 333344588899999999999999999988766
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-06 Score=78.50 Aligned_cols=398 Identities=11% Similarity=0.016 Sum_probs=198.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 130 VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF-ADFVFVYKEMVKAGIVPNVDTLNYL 208 (729)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l 208 (729)
+...-...+.+|-..++-+.|...+....... ....-+.++..+...+++- +++...-+-+.+. + .... .
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p---~aL~-~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P---MALQ-V 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c---hHHH-H
Confidence 45566667777777888888887776553221 1222333444444331222 2222221112221 0 0111 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhc
Q 004813 209 LEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA--NSRVDDSVSILGEMFDL-GIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 209 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 285 (729)
|.+..+.+ +..+..-=..|-...+.|+..+...-+.+++. .++...+...+-.+... -++-|+.....+.+.+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111110 01111111223333344555555555655544 45555555555444432 3556677888888888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELT-YEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNF 364 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 364 (729)
|+.++|+..|+.....+ |+..+ ...-...+.+.|+.+....+...+.... .-+...+
T Consensus 246 Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w------------------- 303 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW------------------- 303 (564)
T ss_pred cCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh-------------------
Confidence 99999999998877643 33222 1222223456777777777777665421 0111112
Q ss_pred HHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 004813 365 LEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCAT 444 (729)
Q Consensus 365 l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 444 (729)
-.-........++..|..+-++..+.+..+...+-.-...+.+.|++++|.-.|+..+... +-+...
T Consensus 304 ------------fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 304 ------------FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred ------------hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 1112222334455555555555555444444444444445555566666666665554432 124455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLV-EGLC-QVEKITEAVEVFCCMSKNGCSLS-SSSFNILIYG 521 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 521 (729)
|..++.+|...|.+.+|.-.-+...+. +..+..+...+. ..+. ...--++|..++++..+. .|+ ....+.+...
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 666666666666666555554444332 112333333331 2221 122335566666665553 333 3344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG 577 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 577 (729)
+...|..++++.+++..... .||....+.|.+.+...+.+.+|.+.|...+..+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66666666666666665553 4666666666666666666666666666666553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.6e-08 Score=86.22 Aligned_cols=193 Identities=9% Similarity=0.096 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH-HHHHHh
Q 004813 100 CKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV-LGAIVE 178 (729)
Q Consensus 100 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~ 178 (729)
...+..+.+..++.+|.+++....+.. +.+...++.|..+|....++..|.+.++++-.. .|...-|... ...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444555666777777777777666654 446667777777777777777777777777543 3444444322 234445
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 004813 179 EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEV--LFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 256 (729)
. +.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 91 A-~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 A-CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred h-cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 5 6777777777666542 222221112222 224566677777776665432 333333333334567777777
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 257 VSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL 303 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 303 (729)
.+-|+...+-+--.....||..+. ..+.|+++.|++...++.++|+
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 777777765433233445654443 3356677777777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-08 Score=94.92 Aligned_cols=230 Identities=13% Similarity=-0.033 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 457 NYEDALRVFRQVSAQS-LVL--DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555321 111 12345555666666677777777777766643 3345666667777777777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004813 534 LRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGL 613 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 613 (729)
.|+...+.. +.+..+|..+..++...|++++|.+.|++..+..+. +. ........+...+++++|.+.+.+.... .
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 777776653 223455666666666777777777777777665332 21 1111122233456677777777654432 2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC---C---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLVSD---S---EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.|+...+ .+. ....|+...+ +.++.+.+. . .+.....|..++..+.+.|++++|...|++..+.+ .||.
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2222111 122 2223444333 233333321 0 01123467778888888888888888888887643 4466
Q ss_pred HHHHHHHhh
Q 004813 688 TTHGLLVGS 696 (729)
Q Consensus 688 ~~~~~ll~~ 696 (729)
+-+...+--
T Consensus 271 ~e~~~~~~e 279 (296)
T PRK11189 271 VEHRYALLE 279 (296)
T ss_pred HHHHHHHHH
Confidence 666554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-07 Score=90.24 Aligned_cols=238 Identities=11% Similarity=-0.027 Sum_probs=166.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI------- 517 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------- 517 (729)
...+.++..+..+++.+.+-+....+.. -+..-++....+|...|.+..+...-....+.|- -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4566777778888999999998888765 3666677788888888888888887777766652 12222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+..+|.+.++++.++..|.+.......|+.. .+....++++...+...-.++.- ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3346666788889999988876554343332 23334455555555443332221 1112223567788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+..|...|.+++... +-|...|....-+|.+.|.+..|++-.+..++. -++....|.-=+-++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999864 336778889999999999999999999988887 344455666566677777889999999999
Q ss_pred HHhCCCCCCHHHHHHHHhhhhh
Q 004813 678 MLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 678 ~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
.++. .|+..-+.--+.-|..
T Consensus 452 ale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhc--CchhHHHHHHHHHHHH
Confidence 9874 5877776666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-06 Score=85.94 Aligned_cols=455 Identities=11% Similarity=-0.021 Sum_probs=252.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHH
Q 004813 111 NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVY 190 (729)
Q Consensus 111 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 190 (729)
+...+...|-+..+.+ +.-...|..|...|+...+...|.+.|++..+.+ ..+..........+++. .+++.|..+.
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~-~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE-STWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc-ccHHHHHHHH
Confidence 3555666665555554 3446789999999998889999999999997754 55677788889999999 9999999884
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004813 191 KEMVKAGIV-PNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ 269 (729)
Q Consensus 191 ~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 269 (729)
-...+.... .-...|..+.-.|.+.++...|+.-|+...+... -|...|..+..+|...|.+..|.++|.+.....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 433332110 0112233345557788999999999998887532 367889999999999999999999999887643
Q ss_pred CCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-------H
Q 004813 270 LEL-SFYTCIIPMLCRENKLEEAIRLFKMMRALD------LMPDELTYEELINCLCENLRLDDANDILEDMI-------V 335 (729)
Q Consensus 270 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~ 335 (729)
|+. ..---....-+..|++.+|...+....... -.--..++-.+...+.-.|-..++.+++++-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 322 222223344567899999999888776421 00112233333333333343333333333322 1
Q ss_pred cCCCCCHHhHHH-------------------HHHHH----HccCCh---H---HHHHHHHh--hcCCCCCCchHHHHHHH
Q 004813 336 IGLTPTDDVFVD-------------------IVRGL----CEVGKF---D---ESVNFLED--KCGYVTSPHNALLECCC 384 (729)
Q Consensus 336 ~~~~p~~~~~~~-------------------l~~~~----~~~~~~---~---~a~~~l~~--~~~~~~~~~~~l~~~~~ 384 (729)
.....+...+.. ++.++ .+.+.. | -+.+.+-. .....+.+|..|+..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 111111111111 11111 111111 1 01111100 11122444444444333
Q ss_pred h----c----CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 385 N----A----GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 385 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
+ . .+...|...+.+..+..-.+...||.|.-. ...|++.-+..-|-+-.... +....+|..+.-.+.+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 3 1 123356666666655544456666666554 45566666666555544432 224556666666667777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCM--SK--NGCSLSSSSFNILIYGLCVMRKVDKAI 532 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (729)
+++.|...|.......+. +...|-.........|+.-++..+|..- .. .|--++..-|-.-.......|+.++-+
T Consensus 865 d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 888888888777665332 4444444433444566666777666652 11 122333333333333334455544433
Q ss_pred HHHHHHHH---------cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 533 RLRSLAYS---------SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 533 ~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
...+.+.. .+.+.+...|........+.+.++.|.+...+.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 32222211 1234455666666666666666666666655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-08 Score=96.78 Aligned_cols=246 Identities=18% Similarity=0.119 Sum_probs=128.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH
Q 004813 273 SFYTCIIPMLCRENKLEEAIRLFKMMRAL-----DL-MPDELT-YEELINCLCENLRLDDANDILEDMIVI---GLTPTD 342 (729)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~ 342 (729)
.+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455777788888888888887665542 11 133222 233556777888888888888887642 111221
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 004813 343 DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEE 422 (729)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (729)
...... ++.|...|.+.|++++|...+++
T Consensus 280 ~~va~~---------------------------l~nLa~ly~~~GKf~EA~~~~e~------------------------ 308 (508)
T KOG1840|consen 280 PAVAAT---------------------------LNNLAVLYYKQGKFAEAEEYCER------------------------ 308 (508)
T ss_pred HHHHHH---------------------------HHHHHHHHhccCChHHHHHHHHH------------------------
Confidence 111111 15555667777777777666544
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHhhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCCHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCA-TYSAFVLGKCKLCNYEDALRVFRQVSAQ---SLVL----DSISYSKLVEGLCQVEKIT 494 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~ 494 (729)
|++++++.... ..|... .++.+...|+..+.+++|..++....+. -+.+ -..+++.|...|...|+++
T Consensus 309 ---Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 309 ---ALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred ---HHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 33344431111 112222 2444555666777777777777654432 0111 2345666777777777777
Q ss_pred HHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCCHHhHHHHHHHHHhcC
Q 004813 495 EAVEVFCCMSKNG-------CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS----GT--SYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 495 ~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~ 561 (729)
+|.+++++++... ..-....++.|...|.+.+++.+|.++|.+.... |. +-...+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 7777777665421 0111233455555555555555555555443321 10 111233444444444444
Q ss_pred ChhHHHHHHHHH
Q 004813 562 RAKDLLVVLAQM 573 (729)
Q Consensus 562 ~~~~A~~~~~~~ 573 (729)
++++|.++.+..
T Consensus 465 ~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 465 NYEAAEELEEKV 476 (508)
T ss_pred cHHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-06 Score=84.14 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=94.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
......|..++|+.+|.+-.+.+ .|=..|-..|.+++|.++-+.-.+. .. ..+|.....-+-.. ++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear-~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEAR-RDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhh-ccH
Confidence 33456789999999999876543 3345566788999998887654332 22 23344344444444 888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEM 263 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 263 (729)
+.|++.|++... |--..+. ++. .++.....+.+.+. |...|.-....+-..|+.+.|+.+|...
T Consensus 875 ~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 875 EAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 888888876431 1111111 111 11122222222222 2233333333344455555555555555
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 264 FDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
.+ |-++++..|-.|+.++|-++-++- -|..+...|.+.|-..|++.+|..+|.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44 444455555555555555544332 13333444455555555555555555444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-06 Score=78.33 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+...|+.++|...|++....++.+..........+.+.|+++....+...+.... +-....|-.-+......+
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEK 314 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhh
Confidence 4444444445555555555554444433322222223333444555555555555544321 111222222223334445
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
+++.|..+-+..++.... +...|-.-...+...|+.++|.-.|+...... +-+...|.-|+++|...|++.+|..+-+
T Consensus 315 ~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 566666666655554333 34444444455555666666666666665431 2355566666666666666666655444
Q ss_pred H
Q 004813 537 L 537 (729)
Q Consensus 537 ~ 537 (729)
.
T Consensus 393 ~ 393 (564)
T KOG1174|consen 393 W 393 (564)
T ss_pred H
Confidence 3
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-07 Score=81.16 Aligned_cols=208 Identities=9% Similarity=-0.049 Sum_probs=152.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
...|.-.|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++..+.. +.+-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667788888888888888888763 3355677788888888888888888888888765 3455666777777788
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGC-ALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
.|++++|...|++....-. .--..+|..+.-+..+.|+.+.|.+.|++.++.... .......+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888877521 113457777777777888888888888888875211 24456677777888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 639 GINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
.+++....+ .++..+....|+.-.+.||.+.|-++=..+.+. -|...-+..+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 888888774 377888888888888888888887776666653 4665555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-07 Score=90.88 Aligned_cols=228 Identities=12% Similarity=-0.067 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 420 NEEIRKAYELLGRMVVSS-VVPD--CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+...+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345666777777776542 1222 345666677788888888888888888887554 677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
...|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99888888753 3346677778888888899999999888888764 43322222222334567788888888765543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA---G--LVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (729)
. .|+...+ .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|+..|++..+.+ ++
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2 2232222 2222335555444 344444432 1 111 23567888888889999999999999998873 44
Q ss_pred CHHhHHH
Q 004813 651 DSSMYNI 657 (729)
Q Consensus 651 ~~~~~~~ 657 (729)
|.+-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 5554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-06 Score=76.78 Aligned_cols=352 Identities=14% Similarity=0.108 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY-LL 209 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li 209 (729)
..-+.+.+..+.+-.+++.|++++..-.+.. +.+......+-..|... .++..|..+++++-.. .|...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 3456777888889999999999999887653 33555666677777788 8999999999999875 555555543 34
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKG--LIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENK 287 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (729)
..+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+|+..+..++++.... .+..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 5667889999999999888763 333332222332 23578999999999887642 344455555666678999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHccCC-hHHHH
Q 004813 288 LEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVF----VDIVRGLCEVGK-FDESV 362 (729)
Q Consensus 288 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~-~~~a~ 362 (729)
++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++...++++.|++-.+..- ...+.+- ..|+ ...+.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHH
Confidence 999999999988765445566787655 455778999999999999988764222110 0000000 0000 00000
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA--DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVP 440 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 440 (729)
..+-+ .+|.-...+.+.|+++.|.+.+-.|..+.-. |+.+...+.-.-. .+++.+..+-+.-++...+ -
T Consensus 238 Sal~e-------AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SALVE-------AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HHHHH-------HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-C
Confidence 00000 0122333456778888888888888776654 6666655443222 2334444444444444444 3
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCM 503 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 503 (729)
...||..++-.||+..-++.|.+++.+-.....+ .+...|+.+-......-..++|.+-++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888888888888888777654332111 23344443322222234555555544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-05 Score=78.53 Aligned_cols=224 Identities=11% Similarity=0.062 Sum_probs=146.9
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+++..|++-...+.++.+-.+...++..+ .+.+.|+.++|..+++.....+ ..+..++..+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 4577899999999988875333333344333 4678999999998888876665 448889999999999999999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------HHHH
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETN-R---------IESA 221 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~---------~~~A 221 (729)
.+|++.... .|+......+..++.|. +++..-.++--+|-+. .+-+...+=+++..+.... . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999764 46677778888889988 8877666655555543 2334444434444443321 1 2235
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 222 LDQFRRMHKKG-CCPNSRTFEIVIKGLIANSRVDDSVSIL-GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 222 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-..-+...-+--++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666665543 1112222222234455677788888887 333343333444444566677777888888888777777
Q ss_pred hCC
Q 004813 300 ALD 302 (729)
Q Consensus 300 ~~~ 302 (729)
.+|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 766
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-06 Score=88.76 Aligned_cols=299 Identities=11% Similarity=-0.037 Sum_probs=183.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc---cchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCD---SWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKC 453 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 453 (729)
..+...+...|+.+.+...+.+.......+.. ........+...|++++|.+.+++..+..+. +...+.. ...+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHH
Confidence 44445555667777766666665554443222 2223344566789999999999988876422 3333332 11222
Q ss_pred ----hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004813 454 ----KLCNYEDALRVFRQVSAQSLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV 528 (729)
Q Consensus 454 ----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (729)
..+..+.+.+.+.... ...| .......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2344555555554421 1223 33444566677888999999999999998864 44567788888999999999
Q ss_pred HHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHH
Q 004813 529 DKAIRLRSLAYSSGTS-YTT--STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALDVEAY-C--ILIQSMSEQNKLKDC 601 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~A 601 (729)
++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 9999999988875422 222 3455678888999999999999999865432 1222211 1 223333344433333
Q ss_pred HHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHhcCCh
Q 004813 602 ALFFNVMVK---AGL--VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV--------LDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 602 ~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~ 668 (729)
.+. +.+.. ... ............++...|+.+.|..+++.+...... ......-....++...|++
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 322 22211 111 111122235666788899999999999988764211 1123334455666789999
Q ss_pred hHHHHHHHHHHhC
Q 004813 669 SQASYLLDLMLGK 681 (729)
Q Consensus 669 ~~A~~~~~~~~~~ 681 (729)
++|.+.+.+....
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-05 Score=78.82 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=82.2
Q ss_pred HHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004813 69 VLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVN 148 (729)
Q Consensus 69 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (729)
.....|+++.|+..|-.+...+ +++...|..-..+++..|++++|+.=-.+-++.. |.-...|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 3456789999999999988775 5688889999999999999999887766666654 555678999999999999999
Q ss_pred hHHHHHHHHHhCCCcccHHhHHHHHHHH
Q 004813 149 GAMRVLVNMNSGGFKLSVDVFNVVLGAI 176 (729)
Q Consensus 149 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (729)
+|+.-|.+-.+.. +.+...++-+..+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999987753 34445555555555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-06 Score=83.87 Aligned_cols=200 Identities=14% Similarity=0.019 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH--
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERY-PNV-REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV-- 171 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-- 171 (729)
...|..+...+...|+.+.+...+....+... ..+ ..........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44455555556666666666555555444321 111 2223333444556777777777777776542 233333331
Q ss_pred -HHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004813 172 -VLGAIVEEKRGFADFVFVYKEMVKAGIVPN-VDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 172 -ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 249 (729)
........ +....+.+.++... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 85 ~~~~~~~~~-~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFS-GMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccc-cCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 11111112 44444554444311 11222 3334455566777788888888888877653 2345566677777778
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 250 NSRVDDSVSILGEMFDLGI-QLEL--SFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 250 ~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
.|++++|...++...+... .++. ..|..+...+...|++++|..+|++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888888888877765432 1222 2355677777788888888888887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-05 Score=85.34 Aligned_cols=372 Identities=10% Similarity=-0.033 Sum_probs=195.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 207 YLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEI----VIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 207 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
.....+...|++.+|........ +...... ........|+++.+...++.+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 33444666777776665443331 1111111 1223445677777777666553211111222233344455
Q ss_pred HhcCCHHHHHHHHHHHHhCCC------CCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 283 CRENKLEEAIRLFKMMRALDL------MPDE--LTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~------~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
...|++++|...+......-- .+.. .....+...+...|++++|...+++..+.- +....+.... +
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~-a--- 493 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIV-A--- 493 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHH-H---
Confidence 677888888888877654210 0111 111222334567888888888888876531 1111110000 0
Q ss_pred cCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC----CCC--CcccchHHHHHHHhcCCHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR----KIA--DCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
.+.+...+...|++++|...+++.... +.. ...++..+...+...|++++|..
T Consensus 494 ---------------------~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~ 552 (903)
T PRK04841 494 ---------------------TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE 552 (903)
T ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 033444455666777666666655432 111 11233455556677788888887
Q ss_pred HHHHHHHC----CCC--C-CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHH
Q 004813 429 LLGRMVVS----SVV--P-DCATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVLDSISYSKLVEGLCQVEKITEAV 497 (729)
Q Consensus 429 ~~~~~~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 497 (729)
.+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|++++|.
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77765432 211 1 1223334444566678888888777776542 11112233444555666788888888
Q ss_pred HHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCChhHHHH
Q 004813 498 EVFCCMSKNGCS-LSSSSF-----NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT---STYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 498 ~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 568 (729)
+.+.++....-. .....+ ...+..+...|+.+.|.+++............ ..+..+..++...|++++|..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887776442100 011111 11123344567788887776665432111111 113345566777788888888
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 569 VLAQMLVE----GCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 569 ~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 713 ~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 713 ILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88777653 22221 234555666777888888888888887765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-06 Score=74.91 Aligned_cols=188 Identities=13% Similarity=0.015 Sum_probs=86.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 488 CQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
...|+...|++.+..+++.. +-|...+..-..+|...|++..|+.-++...+.. ..++.++-.+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 33455555555555555431 2244444444455555555555554444443332 233333334444445555555555
Q ss_pred HHHHHHHHcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccC
Q 004813 568 VVLAQMLVEGCALDVEA----YCIL---------IQSMSEQNKLKDCALFFNVMVKAGLVPDR---ETMLSLLHGLADGS 631 (729)
Q Consensus 568 ~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g 631 (729)
...++.++. .||... |..+ +......++|.++++-.+...+....... ..+..+-.++...|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 555555443 222211 1100 11123344555555555555443211111 12223344455555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.+|++...+..+. .+.|+.++..-+.+|.-..+++.|+.=|+...+
T Consensus 322 ~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred CHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666655554 233355555555566555556666555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-05 Score=69.31 Aligned_cols=307 Identities=9% Similarity=0.037 Sum_probs=166.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEEL---INCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
+...+...|++..|+.-|....+.+ +..|.++ ...|...|+..-|+.=+.++++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-------- 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-------- 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC----chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH--------
Confidence 4445556677777777777766632 2233333 3456667777777776776665 346543321
Q ss_pred cCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMV 434 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 434 (729)
-.-...+.+.|.++.|..-|+.+.+..+.+ |...++.+-+....
T Consensus 110 ----------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~--------------~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 110 ----------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSN--------------GLVLEAQSKLALIQ 153 (504)
T ss_pred ----------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCc--------------chhHHHHHHHHhHH
Confidence 111233456666666666666666554420 11111111111000
Q ss_pred HCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004813 435 VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 435 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 514 (729)
........+..+...|+...|+.....+++..+ .|...|..-..+|...|++..|+.=++...+.. ..+...
T Consensus 154 ------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~ 225 (504)
T KOG0624|consen 154 ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEG 225 (504)
T ss_pred ------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHH
Confidence 011112223334455666666666666665432 255566666666666666666666555554432 234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh----HHH-------H--HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTST----YTK-------I--MLGLVKLQRAKDLLVVLAQMLVEGCALD 581 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~-------l--~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 581 (729)
+-.+-..+...|+.+.++...++.++. .||... |.. | +......++|.++++..+..++..+...
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 445555556666666666666666554 233221 111 0 1223445667777777777766644422
Q ss_pred HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 582 VEAYC---ILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 582 ~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...|+ .+-.++...+++.+|++...+.++ +.|| ..++..-..+|.-...++.|+.-++...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 33333 344455667778888877777776 4555 666777777777777778888777777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=90.15 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV-DKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 536 (729)
+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+....+ +-+..+...++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 22344444444444444444444444444444332 22333333334333344443 33344444
Q ss_pred HHHH
Q 004813 537 LAYS 540 (729)
Q Consensus 537 ~~~~ 540 (729)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-05 Score=89.30 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=135.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHhHHHHHHH
Q 004813 211 VLFETNRIESALDQFRRMHKKGCCPNS----RTFEIVIKGLIANSRVDDSVSILGEMFDL----GI-QLELSFYTCIIPM 281 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~ 281 (729)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. ......+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666665442111111 22333444455566666666666655421 11 0112233444555
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCC--C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--HHhHHHHHH
Q 004813 282 LCRENKLEEAIRLFKMMRA----LDLM--P-DELTYEELINCLCENLRLDDANDILEDMIVI--GLTPT--DDVFVDIVR 350 (729)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~ 350 (729)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5666666666666555432 1110 1 1223334444455556666666666555432 11111 222333444
Q ss_pred HHHccCChHHHHHHHHhhcC----CCC-CCc-----hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc----cchHHHHH
Q 004813 351 GLCEVGKFDESVNFLEDKCG----YVT-SPH-----NALLECCCNAGKFFLAKCILEKMADRKIADCD----SWNIPIRW 416 (729)
Q Consensus 351 ~~~~~~~~~~a~~~l~~~~~----~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~ 416 (729)
.....|+.++|.+.+..... ... ..+ ...+..+...|+.+.|...+............ .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 55566666666655543211 100 000 11123445577888888777665442211111 13456667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 004813 417 LCENEEIRKAYELLGRMVVS----SVVPD-CATYSAFVLGKCKLCNYEDALRVFRQVSAQS 472 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 472 (729)
+...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88889999999988887643 22222 2355666678889999999999999988753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00027 Score=69.68 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR---KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.+++..+++.....-..-+.-+|..+.+---..- ..+.....++++.......-..+|..+++...+....+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4455566665544322223333333332211111 2555666666666544333445677788887888888888999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 570 LAQMLVEGCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 570 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
|.++.+.+..+ ++..+++++..||. ++.+.|.++|+--.+. +.-+.......+.-+.+.|+-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99988887666 67777888877764 6788888888876664 222344445677777788888888899998888755
Q ss_pred CCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 649 VLDS--SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 649 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+++. .+|..++.--..-|+...+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5443 5888888888888998888888777664
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-05 Score=78.39 Aligned_cols=218 Identities=12% Similarity=-0.014 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKV--DKA 531 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 531 (729)
.+..++|.....++++..+. +..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 34556666666666665333 3344544444555555 4677777777776653 33445566555455555542 556
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 004813 532 IRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ---NKL----KDCALF 604 (729)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~----~~A~~~ 604 (729)
+.+++++.+.. +-+..+|+....++.+.|+++++++.++++++.++. |...|+.....+.+. |.. ++++++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66777776655 456667777777777777777777777777776655 566666655554443 222 456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--------------
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADG----SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG-------------- 666 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------- 666 (729)
..+++.... -|...|+.+...+... ++..+|.+.+.+..+. .+.+...+..|++.|+...
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 666666422 2455666666666552 3345677777776654 2445667777777777532
Q ss_pred ----ChhHHHHHHHHH
Q 004813 667 ----LTSQASYLLDLM 678 (729)
Q Consensus 667 ----~~~~A~~~~~~~ 678 (729)
..++|.++++.+
T Consensus 284 ~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 284 EELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccHHHHHHHHHHH
Confidence 235677777776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=86.13 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=55.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSL 623 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 623 (729)
+|+.+...|.-.|.-.|++++|...|+..+...+. |...||-|...++...+.++|+..|.+.++ ++|+ ......|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhh
Confidence 55555555555555566666666666666555333 455566666666666666666666666665 4454 2344445
Q ss_pred HHHHhccCChHHHHHHHHHHH
Q 004813 624 LHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~ 644 (729)
.-+|...|.+.+|.+.|-.++
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 555666666666666555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.2e-07 Score=84.75 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS----EQNKLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
.....+..|.+.++++.|.+.++.|.+. ..|.. ...+..++. -...+.+|..+|+++.+. ..++..+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 3334444555555555555555555433 11221 222222221 112355555555554432 334455555555
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT-SQASYLLDLMLG 680 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 680 (729)
.++...|++++|.+++++..+. .+.++.+...++-+....|+. +.+.++++++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5555555555555555555444 233444444455555555554 334445555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-05 Score=79.42 Aligned_cols=259 Identities=16% Similarity=0.107 Sum_probs=183.5
Q ss_pred CCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 58 RHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISL 137 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 137 (729)
.+.+.+......|.+.|+...|.-+|+.+.+++ |.+..+|..|..+.+..++-..|+..+++..+.+ |.+..++..|
T Consensus 283 ~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaL 359 (579)
T KOG1125|consen 283 IDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMAL 359 (579)
T ss_pred cCCCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 344566667777888899999999999998876 6778899999999999999999999999999987 7889999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHH-----------HHHhcCCChhHHHHHHHHHHH-CCCCCCHHHH
Q 004813 138 VFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLG-----------AIVEEKRGFADFVFVYKEMVK-AGIVPNVDTL 205 (729)
Q Consensus 138 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-----------~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~ 205 (729)
.-.|...|.-.+|...++..+...++ |..+.. .+... ..+....++|-++.. .+..+|...+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 99999999999999999988654311 000000 11111 223344555555543 3334677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004813 206 NYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 206 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (729)
..|.-.|--.|++++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++..+.. +.+...|.-.|...
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNL 511 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhh
Confidence 788877888889999999998887752 2256788888888888888889999998888754322 33444466678888
Q ss_pred CCHHHHHHHHHHHHh---C------CCCCCHhhHHHHHHHHHhcCChhHHH
Q 004813 286 NKLEEAIRLFKMMRA---L------DLMPDELTYEELINCLCENLRLDDAN 327 (729)
Q Consensus 286 g~~~~A~~~~~~m~~---~------~~~p~~~~~~~li~~~~~~~~~~~a~ 327 (729)
|.+++|.+.|-..+. + +..++..+|..|=.++.-.++.|.+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 888888888755442 2 11123345655555555555555433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-05 Score=87.47 Aligned_cols=216 Identities=16% Similarity=0.087 Sum_probs=120.5
Q ss_pred HHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 004813 396 LEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD-----CATYSAFVLGKCKLCNYEDALRVFRQVSA 470 (729)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 470 (729)
|++.....+.+...|-..|....+.++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444444445556666666666666666666666666543 1111 12445555554555555666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHh
Q 004813 471 QSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY-TTST 549 (729)
Q Consensus 471 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 549 (729)
.. ..-..|..|...|.+.+.+++|.++++.|.++ +.-...+|...+..+.++.+-+.|..++.++.+.-.+. ....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 31 12234556666666666666666666666654 23455666666666666666666666666665542111 1122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD 616 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 616 (729)
....+..-.+.|+.+.+..+|+..+...++ ....|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 233334445566666666666666655433 455666666666666666666666666666555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-05 Score=75.78 Aligned_cols=204 Identities=8% Similarity=0.011 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC--HHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK--ITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 496 (729)
.+..++|+.++++++...+. +...|+..-..+...| ++++++..++.+.+...+ +..+|+...-.+.+.|+ .+++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 34566666666666654221 2334444444444455 456777777777665544 44455544444444444 2556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCh----hHHHHH
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL---QRA----KDLLVV 569 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~ 569 (729)
..+++++.+.. +-+..+|+....++...|+++++++.++++++.+ ..|..+|+.....+.+. |.. ++.++.
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66776666653 4466677777777777777777777777777665 34455565555544443 222 355666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
..+++...+. |...|+.+...+.. .++..+|.+++.+..+.+. .+......|+..|+.
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 6666665444 56667666666655 2344567777777665332 244556666666664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.2e-06 Score=88.64 Aligned_cols=227 Identities=10% Similarity=0.005 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-----SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTY 550 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 550 (729)
+...|-..|......++.++|.++.++++.. +.+. ..+|.++++.....|.-+...++|+++.+.. ..-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 5566777888888889999999999988764 2221 3467777777777787888888999988742 234567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD---RETMLSLLHGL 627 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 627 (729)
..|...|.+.+..++|.++++.|.++ +.-....|..++..+.+.++-+.|..++.+..+. -|- .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 88888999999999999999999886 2246778889999999999989999999988874 333 23344455556
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHhhhhhcchhhh
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA--TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~ 705 (729)
.+.|+.+.++.+|+..... .|.....|+.+++.-.++|+.+.+..+|+++...++.|-. ..|.--|.-=...|+.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6789999999999998887 6777889999999999999999999999999988876644 234444444445566655
Q ss_pred hhhc
Q 004813 706 RFAF 709 (729)
Q Consensus 706 ~~~~ 709 (729)
++..
T Consensus 1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-06 Score=84.91 Aligned_cols=230 Identities=15% Similarity=0.108 Sum_probs=185.5
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+.+.|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +||...|..+........
T Consensus 402 ~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 567788999999999999999764 6788899999999999999999988874 789999999998877777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 799999999876543 22222233345799999999999988764 4567788888888889999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVP 615 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p 615 (729)
...... +-+...||.+-.+|.+.++..+|...+.+..+.+.. +...|...+......|.+++|++.+.++.... ...
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 998764 345678999999999999999999999999998744 67778888888899999999999999988641 111
Q ss_pred CHHHHHHHHHH
Q 004813 616 DRETMLSLLHG 626 (729)
Q Consensus 616 ~~~~~~~l~~~ 626 (729)
|..+...++..
T Consensus 622 d~~vl~~iv~~ 632 (777)
T KOG1128|consen 622 DDEVLLIIVRT 632 (777)
T ss_pred cchhhHHHHHH
Confidence 44444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00072 Score=66.80 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
.+....+++.+...-..--..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.+..+++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 34444455554433222123345556666666666666666666666655444 55555666665553 55666666666
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.-.+.- ..++.--...++-+...++-..+..+|++....+..|+ ...|..+++--..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554431 22223334455555666666666666666666533333 34566666666666666666666555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=81.09 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=103.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS 251 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 251 (729)
+...+... |-...|..+|+++. .|.-+|..|...|+...|..+..+-.+. +||...|..+.+......
T Consensus 404 laell~sl-GitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 404 LAELLLSL-GITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHc-chHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 33444444 55555555555443 2444555555555555555555554442 455555555555544444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 252 RVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+. --..+|-.+..+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 455555555443321 111112222235556666666655444321 233455555555556666666666665
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch
Q 004813 332 DMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWN 411 (729)
Q Consensus 332 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (729)
.-+. ..||..+- ||.+-.+|.+.++-.+|...+.+..+-+..+...|.
T Consensus 544 rcvt--L~Pd~~ea------------------------------WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 544 RCVT--LEPDNAEA------------------------------WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred HHhh--cCCCchhh------------------------------hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 5544 23443332 244444555555555555555555444433445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMV 434 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~ 434 (729)
..+....+.|.+++|++.+.++.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHH
Confidence 55555555555555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=72.85 Aligned_cols=161 Identities=14% Similarity=0.063 Sum_probs=118.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004813 519 IYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL 598 (729)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 598 (729)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467778887776544332221 11 0122356678888888888877655 888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGL-ADGSQ--LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+. .+.+...+..++..+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998532 2567777777764 66676 58999999999998 4668889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHhh
Q 004813 676 DLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 676 ~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+++++. ..|+..-+ .+|.+
T Consensus 168 ~~aL~l-~~~~~~r~-~~i~~ 186 (198)
T PRK10370 168 QKVLDL-NSPRVNRT-QLVES 186 (198)
T ss_pred HHHHhh-CCCCccHH-HHHHH
Confidence 999885 35555443 33354
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-08 Score=57.79 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-08 Score=57.62 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=16.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-06 Score=77.45 Aligned_cols=185 Identities=11% Similarity=-0.003 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--Hh
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-S---SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT--ST 549 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 549 (729)
....+-.+...+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 55667777788888999999999999887753 33 2 45677788888899999999999998876422111 13
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004813 550 YTKIMLGLVKL--------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML 621 (729)
Q Consensus 550 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (729)
+..+..++... |++++|.+.++++....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 44455555544 6778888888888776333 2222222111100 000 000 0112
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSDS--EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.+...|.+.|++++|...++++.+.. .+.....+..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667889999999999999998872 1223568889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.002 Score=67.92 Aligned_cols=535 Identities=10% Similarity=0.019 Sum_probs=282.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHH
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADF 186 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 186 (729)
...+++..|.+....+.+.. |....+...-.-.+.+.|+.++|..+++.....+.. |..+...+-..|.+. ++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~-~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL-GKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH-hhhhHH
Confidence 45688899999998887764 333222222233446899999999999988665533 788888888888888 999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-C---------hhHH
Q 004813 187 VFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS-R---------VDDS 256 (729)
Q Consensus 187 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~~~a 256 (729)
..+|++.... .|+......+..+|++.+.+.+-.+.--+|-+. .+-+...+-.++....+.. . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999875 566666677777888887776654444444332 2234455555555444321 1 2346
Q ss_pred HHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 257 VSILGEMFDLG-IQLELSFYTCIIPMLCRENKLEEAIRLF-KMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
.+.++.+.+.+ .--+..-.-.-...+...|++++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66667766544 2122222222234455688899999998 344443332344444456677888899999999999988
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 004813 335 VIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPI 414 (729)
Q Consensus 335 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 414 (729)
..| +|. |...+.. ..++++....... -..+...+..+...+..++..... ....|-+-+
T Consensus 254 ~k~--~Dd--y~~~~~s---------v~klLe~~~~~~a------~~~~s~~~~l~~~~ek~~~~i~~~--~Rgp~LA~l 312 (932)
T KOG2053|consen 254 EKG--NDD--YKIYTDS---------VFKLLELLNKEPA------EAAHSLSKSLDECIEKAQKNIGSK--SRGPYLARL 312 (932)
T ss_pred HhC--Ccc--hHHHHHH---------HHHHHHhcccccc------hhhhhhhhhHHHHHHHHHHhhccc--ccCcHHHHH
Confidence 876 443 3222221 1111111100000 001111122222222222222111 111222222
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH
Q 004813 415 RWLC---ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI-------SYSKLV 484 (729)
Q Consensus 415 ~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~ 484 (729)
.... .-|+.+++.-.|-+-. |-+| .|..=+..|...=..++...++....... ++.. .+.+.+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHH
Confidence 2222 2345554433332211 1111 11111222222222333333333332211 0100 011111
Q ss_pred HHHHccC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHH
Q 004813 485 EGLCQVE-----KITEAVEVFCCMS---KNG------CSLSSS---------SFNILIYGLCVMRKVD---KAIRLRSLA 538 (729)
Q Consensus 485 ~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~~---~A~~~~~~~ 538 (729)
....-.| ..+.-..++.+.. ++| +-|+.. +.+.|++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111122 1222223332221 122 222222 3467888888888766 344444444
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 004813 539 YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-R 617 (729)
Q Consensus 539 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~ 617 (729)
.... +.|..+--.++..|.-.|-...|.++|+.+.-+.+.-|...|. +..-+...|++.-+...+.....- +.-+ .
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 4432 3444555668888988899999999999887776766655553 344556778888888888876653 1111 1
Q ss_pred HHHHHHHHHHhccCChHHHHHHH---HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGI---NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+-..+..+| +.|.+.+..++. +++......--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 2223344444 455555554443 344333222223345667788888888888888888876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-05 Score=81.82 Aligned_cols=234 Identities=10% Similarity=0.024 Sum_probs=133.2
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc
Q 004813 376 HNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL 455 (729)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 455 (729)
+..|+..|...+++++|.++.+...+..+.....|-.+...+.+.++...+..+ .++......
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~~~~ 96 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhcccc
Confidence 366777777777777777777766666555555555555555555554443333 223333334
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLR 535 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 535 (729)
.++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++++.. +-|..+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44444444444444432 234466677777777788888888888877765 45667777777777777 777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 004813 536 SLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GLV 614 (729)
Q Consensus 536 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 614 (729)
.++... +...+++..+.++|.++....+. +...+ .++.+.+... |..
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki~~~~~~~ 220 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKVLGHREFT 220 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHHHhhhccc
Confidence 776543 45556677777777777665322 22121 1222222221 111
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW 663 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 663 (729)
--..++..+-..|...++++++..+++.+.+. .+.|.....-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH-DNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchhhHHHHHHHHH
Confidence 12233444445555566666666666666665 3344445555555554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-05 Score=72.62 Aligned_cols=185 Identities=8% Similarity=-0.025 Sum_probs=129.9
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---H
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-L-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS-S---S 513 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~ 513 (729)
.....+..+...+...|+++.|...|+++....+. | ....+..+..++.+.|++++|...++++.+.. |+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34566777788899999999999999999876432 1 12466778899999999999999999998753 32 2 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 004813 514 SFNILIYGLCVM--------RKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEA 584 (729)
Q Consensus 514 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 584 (729)
.+..+..++... |+.++|.+.|+.+.+.. |+. ..+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455566666654 78899999999998764 433 22222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGL-VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...+...|.+.|++++|...+++..+... .| ....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887521 12 3567888999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-05 Score=68.67 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC--hhHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL-VKLQR--AKDL 566 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A 566 (729)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456666666666666653 4567777777777777777777777777777765 34556666666653 55555 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+++++..+.++. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777554 6666777777777777777777777777764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-05 Score=79.69 Aligned_cols=180 Identities=7% Similarity=-0.024 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
..+...+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4567788888888888899999999888888763 233456667778888888899998888888887554 56667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
..++.+.|++++|..+|+++...+ .-+...+..+..++...|+.++|...|++..+. ..+....|+.++.- .
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------L 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------H
Confidence 788888899999999999888732 223678888888888889999999998888887 34445555544332 2
Q ss_pred hHHHHHHHHHHhCCC----CCCHHHHHHHHhhhh
Q 004813 669 SQASYLLDLMLGKGW----VPDATTHGLLVGSSV 698 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~----~p~~~~~~~ll~~~~ 698 (729)
..-...++++.-.+. ......+...|.-+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 233445555543322 222334455554444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=67.51 Aligned_cols=101 Identities=7% Similarity=-0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+. .+.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 3345556666777777777777766642 224556666666677777777777777777765 35566667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 665 EGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.|++++|++.|++..+ ..|+...
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~~ 127 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADAS 127 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCChH
Confidence 7777777777777665 3454433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-05 Score=67.18 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+-..+...|+-+.+..+....... ...+.......+....+.|++..|...+++..... .+|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444555555555555554443322 13334444456666666666666666666666543 33666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
|+.++|..-|.+..+. .| +...++.+.-.|.-.|+.+.|..++...... ..-|..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666663 22 2445556666666666666666666666655 233555566666666666776666665
Q ss_pred HHH
Q 004813 675 LDL 677 (729)
Q Consensus 675 ~~~ 677 (729)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.5e-05 Score=66.52 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004813 446 SAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM 525 (729)
Q Consensus 446 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (729)
..+-..+...|+-+....+......... .|......++....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3334445555555555555544333222 244445556666666666666666666665543 45666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFF 605 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 605 (729)
|+++.|..-|.+..+.. ..++..++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666665543 233444555555555566666666666665554332 4444455555555666666666554
Q ss_pred HH
Q 004813 606 NV 607 (729)
Q Consensus 606 ~~ 607 (729)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00057 Score=61.30 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=61.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----c
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----E 285 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 285 (729)
..|+..|++++|++...... +......=...+.+..+++-|.+.++.|.+. .+..+.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 44555666666666554411 2222222233444555566666666666552 333444444444433 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVI 336 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 336 (729)
+++.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++.+..
T Consensus 187 ek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44666666666665532 255555666666666666666666666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=67.29 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=86.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 569 VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 569 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
.+++.+...+. +......+...+...|++++|.+.++.+...+ ..+...+..+..++...|++++|..++++..+. .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 44555554322 33445566677778888888888888887743 235677777888888888888888888888776 4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 649 VLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 649 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
+.+...+..+...|...|++++|.+++++..+. .|+...+..+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 566777888888888888888888888888874 466655444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.4e-05 Score=80.19 Aligned_cols=148 Identities=12% Similarity=0.034 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHH
Q 004813 92 FQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNV 171 (729)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (729)
+++++..+-.+..+..+.|++++|+.+++...+.. |.+...+..++.++.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 67889999999999999999999999999999886 7788999999999999999999999999998764 444555666
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004813 172 VLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244 (729)
Q Consensus 172 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 244 (729)
+-.++.+. |++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..+
T Consensus 160 ~a~~l~~~-g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEI-GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 66677777 99999999999999843 335788999999999999999999999998774 234445554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00023 Score=69.63 Aligned_cols=139 Identities=14% Similarity=0.009 Sum_probs=89.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 599 (729)
.+...|++++|+..++.+.... +-|+..+......+...++.++|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3445567777777777766542 344444555556667777777777777777765 333 455556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+|+.+++..... .+-|+..|..|.++|...|+..++... ....|...|++++|+..+....
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777664 334566777777777777766555433 3344556677777777777776
Q ss_pred hC
Q 004813 680 GK 681 (729)
Q Consensus 680 ~~ 681 (729)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 65
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-05 Score=66.10 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
+..+..++...|++++|...|+......+. +...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334555666667777777777766665433 56666666666777777777777777776642 2245566666666667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 630 GSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.|+.++|+..+++..+. .+.++..|...
T Consensus 105 ~g~~~eAi~~~~~Al~~-~p~~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM-SYADASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHh-CCCChHHHHHH
Confidence 77777777777776665 23344444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0005 Score=74.69 Aligned_cols=151 Identities=7% Similarity=0.108 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcC
Q 004813 308 LTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAG 387 (729)
Q Consensus 308 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~ 387 (729)
.++..+..+|-+.|+.+++..+++++++.. +-|....+.+.-.++.. ++++|++++. ..+..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~-----------KAV~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK-----------KAIYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH-----------HHHHHHHhhh
Confidence 344455555555555555555555555543 22344454555555554 5555555542 2233356666
Q ss_pred ChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 388 KFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVS-SVVPDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
++..+.+++.++....+.+... -..+.+.+... |..--..++..+-..|-..++++++..+++
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~----------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDF----------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred cchHHHHHHHHHHhcCcccchH----------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7788888888887775543222 22333333322 222234455555566677777888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH
Q 004813 467 QVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
.+.+.... |.....-++.+|.
T Consensus 248 ~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCc-chhhHHHHHHHHH
Confidence 88776544 5566666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00036 Score=62.51 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 383 CCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE----NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
+.+..+++.|.+.+++|.+-+ +..+.+.|.+++.+ .+....|.-+|++|-++ ..|+..+.+....++...+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 344455555555555555443 33344444444332 33455555555555443 345555555555555555566
Q ss_pred HHHHHHHHHHHhCCC
Q 004813 459 EDALRVFRQVSAQSL 473 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~ 473 (729)
++|..+++.......
T Consensus 224 eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 224 EEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHHHHHhccC
Confidence 666665555555433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00083 Score=59.82 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=98.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+.-+....|+.+.|...++++..+-+.+...--.-..-+-..|++++|+++++.+++.+ +.|..++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3444455566777777777777776653333332222333445677777777777777765 335555555555555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR---KVDKAIR 533 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 533 (729)
+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. +.++..+..+...+...| +.+.|.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666654 44577777777777777777777777777776642 234444455555544433 3455666
Q ss_pred HHHHHHHcC
Q 004813 534 LRSLAYSSG 542 (729)
Q Consensus 534 ~~~~~~~~~ 542 (729)
.|.+..+..
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 666666543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0065 Score=58.86 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=113.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG-CALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETM-LSL 623 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 623 (729)
-...|...+++..+....+.|..+|-++.+.| +.+++..+++++..++ .|+...|-.+|+--... .||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567778888778888889999999998887 6678888888887766 47888888888876653 4454443 456
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcc
Q 004813 624 LHGLADGSQLHLVSSGINKLVSDSEVLD--SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 701 (729)
+.-+..-++-+.|..+|+..++. +..+ ..+|..+|.--..-|+...|..+=++|.+ +.|...+...+++.+.-..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 66677888888999999977665 3334 56899999988899999999888888887 4677777777777765333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0091 Score=58.09 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=91.9
Q ss_pred HHHHcCCChHHHHHHHHHhhhCCCCCC---CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 004813 68 RVLDNTNDLSSALKIFKWVSIQKRFQH---TAD-TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFS--F 141 (729)
Q Consensus 68 ~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 141 (729)
-+|++++++++|.++|..+-......| ... .-+.++.+|. ..+.+.+...+....+.. +. ..|..+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-~~--s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-GK--SAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-CC--chHHHHHHHHHH
Confidence 357789999999999998865421111 112 2345566654 467788887777776653 22 233333333 3
Q ss_pred HhcCChhhHHHHHHHHHhC--CCcc------------cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC----CCCHH
Q 004813 142 VNHYRVNGAMRVLVNMNSG--GFKL------------SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI----VPNVD 203 (729)
Q Consensus 142 ~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~ 203 (729)
-+.+++++|.+.+...... +..+ |-..-+.....+... |.+.++..+++++...=. ..+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 4888999999998887544 2222 112223455667778 999999999988876533 37888
Q ss_pred HHHHHHHHHHh
Q 004813 204 TLNYLLEVLFE 214 (729)
Q Consensus 204 ~~~~li~~~~~ 214 (729)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 99987666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0015 Score=58.27 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=129.7
Q ss_pred hhcCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004813 453 CKLCNYEDALRVFRQVSA---QS-LVLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK 527 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 527 (729)
....+.++..+++.++.. .| ..++..+ |..+.-+....|+.+.|...++.+...- +-+..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 345568888888888874 35 3444433 4444555566788888888888887752 3333333322333456688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 528 VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
+++|+++++.+.+.+ +.|..++.-=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888888776 566677766666666777777888887777776 455888888888888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccC---ChHHHHHHHHHHHhC
Q 004813 608 MVKAGLVPD-RETMLSLLHGLADGS---QLHLVSSGINKLVSD 646 (729)
Q Consensus 608 ~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 646 (729)
++=. .|. ...+..+...+...| +++.|.+++.+..+.
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8863 444 444455555544433 566788888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00052 Score=67.25 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=107.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQ 632 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 632 (729)
.-.+...|.+++|+..++.++..-+. |...+....+.+.+.++.++|.+.+++++. ..|+ ......+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCC
Confidence 34456788999999999999887433 666667778899999999999999999998 4666 6677788999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 633 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
..+|+.++++.... .+.|+..|..|..+|...|+..+|....-+....
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999987 6889999999999999999999999988887754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=62.03 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCC
Confidence 3333444444444444444443332 223333344444444444444444444444333211 23333333444444444
Q ss_pred HHHHHHHHHHHHH
Q 004813 598 LKDCALFFNVMVK 610 (729)
Q Consensus 598 ~~~A~~~~~~~~~ 610 (729)
+++|.+.|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00016 Score=61.78 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR--ETMLSLLH 625 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 625 (729)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 47778888888888887643311 223334556778889999999999998886522221 24445677
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.+...|++++|+..++..... ...+..+...+++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999998775433 345567778899999999999999988864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=71.77 Aligned_cols=124 Identities=15% Similarity=0.053 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG 630 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 630 (729)
..|+..+...++++.|+.+++++.+.. |+. ...+++.+...++-.+|.+++.+.++.. +-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345555566677888888888887763 443 3346677777777788888888877642 22555666666677888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 631 SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 631 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++.+.|+++.+++.+. .|.+..+|..|+.+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887 566667888888888888888888888887663
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-06 Score=49.58 Aligned_cols=34 Identities=44% Similarity=0.652 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=48.48 Aligned_cols=33 Identities=36% Similarity=0.645 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 204 TLNYLLEVLFETNRIESALDQFRRMHKKGCCPN 236 (729)
Q Consensus 204 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 236 (729)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=47.57 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCP 235 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 235 (729)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=47.38 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
.+|+.++++|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0009 Score=57.19 Aligned_cols=125 Identities=10% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccH--HhHHHH
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNV---REALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSV--DVFNVV 172 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l 172 (729)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+.. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666666666666666653 222 334444556666677777777777777654422221 122334
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRR 227 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 227 (729)
...+... |++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~-~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQ-GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHc-CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555 6777777766553322 22334555566666667777777766654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00065 Score=67.37 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=81.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
...|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555556677777777777777653 44 33346666666677777777777776543 3345555555566777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
.++++.|+++.+++.+..+. +..+|..|..+|...|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77778888887777776332 45577778888888888888877776554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.044 Score=56.34 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCcc--------cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKL--------SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGI 198 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~ 198 (729)
.|.+..|..+...-...-.++.|...|-+.... |++. +...-.+=+.++. |.+++|+++|-++-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drr-- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRR-- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchh--
Confidence 355666666666655555566666555544221 1110 1111111122222 6666666666555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC--PNSRTFEIVIKGLIANSRVDDSVSILGE 262 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (729)
...|..+.+.|+|-...++++.-- .+.. --...|+.+...++....|++|.+.+..
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123455555666665555553210 0000 0123455555555555555555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00048 Score=66.12 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS-MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGL 627 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (729)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666653321 122333322222 22234455566666666654 333455555666666
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 628 ADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
.+.|+.+.|+.+|++.... ++++. ..|...++.-.+.|+.+.+.++.+++.+ +-|+...+..++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 6666666666666666654 22222 3666666666666776666666666665 344544555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00052 Score=68.29 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 004813 472 SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN--GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTST 549 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 549 (729)
+...+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446667777788887788888888888888764 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888776666666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00059 Score=53.41 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHH
Confidence 4445566667777777877777777642 223355666777777778888888888777776 34455677777788888
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888877765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0037 Score=59.91 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=56.6
Q ss_pred HHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVE---GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 631 (729)
-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.--++..+ +.|. ...|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 345778888888888887764 3445566666666677778888888877777765 2221 111222223445567
Q ss_pred ChHHHHHHHHHHHhC
Q 004813 632 QLHLVSSGINKLVSD 646 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~ 646 (729)
+|++|.+-+++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00036 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLH 634 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 634 (729)
-+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666665444 555566666666666666666666666655 3443 345666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHH
Q 004813 635 LVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+|++.|++..+. .|+..+|.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHH
Confidence 666666666664 44444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.052 Score=51.93 Aligned_cols=289 Identities=12% Similarity=0.043 Sum_probs=181.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHhhcCCHHHH
Q 004813 386 AGKFFLAKCILEKMADRKIADCDSWNIPIR--WLCENEEIRKAYELLGRMVVSSVVPDCA--TYSAFVLGKCKLCNYEDA 461 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 461 (729)
.|+-..|.++-.+..+.=..|....-.++. +-.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555444433211113333333332 233468888888888888742 2221 122333344578889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHH
Q 004813 462 LRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG-CSLSSSS--FNILIYGLC---VMRKVDKAIRLR 535 (729)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~A~~~~ 535 (729)
..+-+...+.-.. -...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9888887765433 45677888899999999999999998775532 2333321 122222221 123455565555
Q ss_pred HHHHHcCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 004813 536 SLAYSSGTSYTTS-TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GL 613 (729)
Q Consensus 536 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 613 (729)
.+..+. .||-. .-..-..++.+.|+..++-.+++.+-+..+.|++.. +..+.+.|+ .++.=+++..+. .+
T Consensus 253 ~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHHHHhc
Confidence 555443 45533 223345678899999999999999998866665432 222344444 444444444432 35
Q ss_pred CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHH
Q 004813 614 VPD-RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE-GLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 614 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
+|| ......+..+-...|++..|..--+..... .|....|..|.+.-... ||-.++..++-+..+..-.|+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 555 456667777888899999988888777764 78888999999888776 99999999999988766566543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00064 Score=52.31 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGI-VPNVDTLNYLLEVLFET--------NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLI 248 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 248 (729)
+++.....+|+.++..|+ -|+..+|+.++.+.++. ++.-..+.+|+.|...+++|+..||+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 44444444444444332 123345556666666666666666666665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=53.72 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLV--PDRETMLSLLHGLADGSQLHLVSSGINKLVSDS--EVLDSSMYNILI 659 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 659 (729)
++..++..+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|.+.++.+.... .+.....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777653211 112345556667777777777777777776641 111244566777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004813 660 NGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00067 Score=67.55 Aligned_cols=122 Identities=8% Similarity=0.104 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKK--GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYT 276 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (729)
+.+......+++.+....+++.+..++-+.+.. ....-..|.+++++.|...|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555666665666666666666666553 121223344566677777777777777666666667667777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 004813 277 CIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCEN 320 (729)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 320 (729)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777666666555445555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00089 Score=66.83 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=42.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 635 (729)
+...|++++|++.|+++++..+. +...|..+..+|...|++++|+..++++++. .| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445555555555555554332 3444444455555555555555555555542 22 23344444445555555555
Q ss_pred HHHHHHHHHhC
Q 004813 636 VSSGINKLVSD 646 (729)
Q Consensus 636 A~~~~~~~~~~ 646 (729)
|+..|+++.+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00073 Score=52.03 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=38.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004813 244 IKGLIANSRVDDSVSILGEMFDLGI-QLELSFYTCIIPMLCREN--------KLEEAIRLFKMMRALDLMPDELTYEELI 314 (729)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 314 (729)
|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444331 2334455556666666666666666665
Q ss_pred HHHH
Q 004813 315 NCLC 318 (729)
Q Consensus 315 ~~~~ 318 (729)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=53.51 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV--PDRETMLSLLHG 626 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 626 (729)
..++..+.+.|++++|.+.|..+...... .....+..+..++.+.|++++|.+.|+.+...... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444455555555555555555543211 01233444555555555555666655555543111 112344455555
Q ss_pred HhccCChHHHHHHHHHHHhC
Q 004813 627 LADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~ 646 (729)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55556666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0086 Score=57.87 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=23.3
Q ss_pred HHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 555 LGLVKL-QRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 555 ~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..|... |++++|++.|++..+. + .+. ..++..+...+.+.|++++|.++|++...
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444 5555555555554432 1 100 12233344445555555555555555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.7e-05 Score=56.35 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 595 QNKLKDCALFFNVMVKAGL-VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.|++++|+.+++++.+... .++...+..+..+|.+.|++++|..++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776422 11344455566777777777777777766 2221 1233444455777777777777777
Q ss_pred HHHH
Q 004813 674 LLDL 677 (729)
Q Consensus 674 ~~~~ 677 (729)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=7e-05 Score=43.98 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0047 Score=59.69 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444455555555555554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=58.89 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=86.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
.-..+.+++.+|+..|.++++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34567899999999999999875 567778888889999999999999999988876544 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
+|.+.|++.++ +.|+..+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999987 7888877655443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.032 Score=47.44 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCc-ccHHhHHHH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFK-LSVDVFNVV 172 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 172 (729)
|+...-..+...+.+.|++.+|...|++...--+-.+......+.++....+++..|...++.+-+.+.. .++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444556666666666666666666655444555666666666666666666666666666443211 112223333
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESAL 222 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 222 (729)
-+.+... |.+..|+..|+..... -|+...-......+.++|+.+++.
T Consensus 167 aR~laa~-g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQ-GKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhc-CCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4455555 6666666666666554 233222222233344455444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=43.09 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (729)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=51.34 Aligned_cols=92 Identities=4% Similarity=0.042 Sum_probs=55.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQ 632 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 632 (729)
+..-+...|++++|.++|+-+...++. +..-|-.|.-++-..|++++|+..|........ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 334445566666666666666655433 445555566666666666666666666666432 245555666666666666
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.+.|++.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=50.51 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=6.3
Q ss_pred HHHHhcCCHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFN 606 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~ 606 (729)
..+...|++++|...+.
T Consensus 76 ~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 76 LAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 33333333333333333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00093 Score=63.59 Aligned_cols=132 Identities=12% Similarity=0.013 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLV----EGCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----G-LVPDRE 618 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~p~~~ 618 (729)
.|..|.+.|.-.|++++|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|...... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666777888888766543222 2211 12345667788888888888888888765432 2 122345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD-----SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+|...|.-..++++|+.++.+-... ...-....+.+|.++|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667777777777888888877653321 1222445677888899888988888877766544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=55.38 Aligned_cols=87 Identities=5% Similarity=-0.055 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLH 625 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 625 (729)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455566666667777777777777665433222 245566666666777777777777766663 23 2444445555
Q ss_pred HHhccCChHHHH
Q 004813 626 GLADGSQLHLVS 637 (729)
Q Consensus 626 ~~~~~g~~~~A~ 637 (729)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0063 Score=56.47 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=98.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHH
Q 004813 567 LVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS---QLHLVSSGINKL 643 (729)
Q Consensus 567 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 643 (729)
..-++.-+..++. |...|-.|..+|...|+++.|..-|.+..+. -.++...+..+..++..+. ...++..+|+++
T Consensus 142 ~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3334444555555 8999999999999999999999999999985 2335667777777765433 467899999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 644 VSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 644 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
... .+.|+.....|...+...|++.+|...|+.|++. -|....+..+|...
T Consensus 220 l~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 220 LAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred Hhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 998 4678888889999999999999999999999985 45556666666553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00022 Score=54.14 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 004813 73 TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMR 152 (729)
Q Consensus 73 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 152 (729)
+|+++.|+.+|+.+....+..++...+..+..++.+.|++++|..+++. ...+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566666666666655432111333344456666666666666666655 2222 1233444444666666666666666
Q ss_pred HHHH
Q 004813 153 VLVN 156 (729)
Q Consensus 153 ~~~~ 156 (729)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0036 Score=62.50 Aligned_cols=92 Identities=9% Similarity=0.001 Sum_probs=63.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
...+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777777653 3455666677777777777777777777777654 34556666777777777777
Q ss_pred hHHHHHHHHHHHcC
Q 004813 564 KDLLVVLAQMLVEG 577 (729)
Q Consensus 564 ~~A~~~~~~~~~~~ 577 (729)
++|+..|++.++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0034 Score=52.52 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..-.+...+...|++++|..+|+-+... .| +..-|..|.-+|...|++++|+..+....... +.|+..+..+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3334555667899999999999999884 44 45677788889999999999999999999984 67889999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004813 663 WKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~ 681 (729)
...|+.+.|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0057 Score=49.34 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLW 663 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 663 (729)
..++-..|+.++|+.+|++..+.|+... ...+..+...+...|++++|..++++.... .+. +......+.-++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHH
Confidence 3455667777777777777777665544 335556667777777777777777777765 222 2333344555677
Q ss_pred hcCChhHHHHHHHHHH
Q 004813 664 KEGLTSQASYLLDLML 679 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~ 679 (729)
..|+.++|++++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7778877777776554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0094 Score=62.31 Aligned_cols=70 Identities=14% Similarity=-0.024 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+...|..+.-.....|++++|...++++.+.+ |+...|..++..+...|+.++|.+.+++..+. .|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 44556666555556678888888888887763 56777777888888888888888888777763 455444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.21 Score=51.61 Aligned_cols=203 Identities=10% Similarity=0.088 Sum_probs=124.9
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA-GIVPNVD--------TLNYLLEVLFETNRIESALDQFRRMHKKGC 233 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 233 (729)
.|.+..|..+....... -.++-|+..|-+...- |++.-.. .-.+=+.+ --|++++|.++|-+|-++.
T Consensus 689 nPHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 47778888777766665 6777777777655431 2211000 00111122 2478888888887776542
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 004813 234 CPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE----LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELT 309 (729)
Q Consensus 234 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 309 (729)
..|..+.+.|||-.+.++++.- |...| ...|+.+.+.++....+++|.+.|..-...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 3355666777877666655432 11111 346777888888888888888887654321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCCh
Q 004813 310 YEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKF 389 (729)
Q Consensus 310 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 389 (729)
...+.++.+..++++-+.+...+ +.+....-.+..++...|..++|.+.+-+...+ .+.+..|....++
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQW 894 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHH
Confidence 12456666666666655544443 345556667778888899999888876554333 5677778888888
Q ss_pred hHHHHHHHHH
Q 004813 390 FLAKCILEKM 399 (729)
Q Consensus 390 ~~a~~~~~~~ 399 (729)
.+|.++-++.
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8887776553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0028 Score=60.88 Aligned_cols=128 Identities=10% Similarity=0.056 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV-MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGL 557 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 557 (729)
+|..+++..-+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555322 2223333333333222 34444455555555544 234445555555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+.++.+.|..+|++.... .|.. ..|..+++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1222 3555555555566666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0094 Score=52.72 Aligned_cols=61 Identities=16% Similarity=-0.043 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS--SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444555555555555555544321111 23344444444445555555555444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.067 Score=45.57 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG---CALDVEAYCI 587 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~ 587 (729)
+...--.|..+....|+..+|...|++...--+.-|......+.++....++...|...++++.+.. -.||. .-.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHH
Confidence 3333334444444444444444444444433333344444444444444444444444444444431 11221 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
+.+.|...|.+.+|..-|+.... ..|+..........+.++|+..++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 33444444555555555544444 23333333333333444444444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.045 Score=51.21 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREA---LISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+......+.+.|++++|...|+.+.... |.+... ...++.++.+.+++++|...+++..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33334445555666666666666665543 222222 244555666666666666666666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00063 Score=48.55 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 686 (729)
+...+...|++++|++.|+++.+. .+.+...|..++.++...|++++|.++|+++.+. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 445677788888888888888887 3556778888888888888888888888888763 455
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0022 Score=56.22 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 004813 80 LKIFKWVSIQKRFQHTADTYCKMILKLGLA-----GNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVL 154 (729)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 154 (729)
...|+.+..+ ..+..+|..+++.+.+. |..+-....+..|.+.|+.-+..+|+.|+..+=+ |.+
T Consensus 34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f------- 102 (228)
T PF06239_consen 34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF------- 102 (228)
T ss_pred HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc-------
Confidence 3445554222 45677787777777653 4455556666666666666666666666666532 111
Q ss_pred HHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 155 VNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETN 216 (729)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 216 (729)
.|.. .+.++..-+- .+-+-+++++++|...|+-||..++..|++.+.+.+
T Consensus 103 --------vp~n-~fQ~~F~hyp---~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 103 --------VPRN-FFQAEFMHYP---RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cccc-HHHHHhccCc---HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111 1111111111 334566667777777777777777777777665443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.052 Score=50.76 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=98.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGCSLSS-SSF---NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
....+...|++++|.+.|+++...- |+. ... -.++.++.+.+++++|...+++..+........-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3334455677777777777776642 322 222 3455666777777777777777776543322233333333322
Q ss_pred h--cC---------------C---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 559 K--LQ---------------R---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE 618 (729)
Q Consensus 559 ~--~~---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 618 (729)
. .+ + ..+|...|+++++. -|+. .-..+|...+..+... . ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~---l-a~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR---L-AK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---H-HH
Confidence 1 10 1 23344555555544 2222 2223443333333221 0 01
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.-..+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556678888888888888888877 333344567778888888999888888776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0053 Score=53.91 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004813 199 VPNVDTLNYLLEVLFE-----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELS 273 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 273 (729)
..|..+|..++..|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3455566666665553 24455555555556555666666666665555432 1111 1111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLR 322 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 322 (729)
...... - .-.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111000 0 122456677777777777777777777777777765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0048 Score=54.39 Aligned_cols=63 Identities=11% Similarity=-0.129 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY--TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
.|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555554432111 1224445555555555555555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.036 Score=49.94 Aligned_cols=138 Identities=10% Similarity=-0.044 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML-----SLLH 625 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~ 625 (729)
+.++..+.-.|.+.-...++.+.++....-+......+++.-.+.|+.+.|..+|++..+..-..|..+.+ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555555555555444455555555555556666666666666554432222222222 2222
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
.|.-++++..|...+.+.... .+.++...|.-+-++.-.|+..+|++.++.|+.. .|...+.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 344455555555555555554 2334444444444445556666666666666652 45444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.2 Score=49.20 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHH--
Q 004813 105 KLGLAGNVEEMEGLCQNMVKERYPNVR------EALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAI-- 176 (729)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-- 176 (729)
.+-+++++.+++.+|.++.+.. ..+. ...+.++++|. .++.+.....+....+. .| ...|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567788888888888876653 2221 22334566664 33455555555555332 12 22233333322
Q ss_pred HhcCCChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChh
Q 004813 177 VEEKRGFADFVFVYKEMVKA--GIVP------------NVDTLNYLLEVLFETNRIESALDQFRRMHKK----GCCPNSR 238 (729)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~ 238 (729)
.+. +.+..|.+.+....+. +..| |-..=+..+..+...|++.++..++++|... ....+..
T Consensus 90 Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 234 7788888877776654 2222 1111244556667777777777777776553 2335666
Q ss_pred hHHHHHHHHH
Q 004813 239 TFEIVIKGLI 248 (729)
Q Consensus 239 ~~~~li~~~~ 248 (729)
+|+.++-.++
T Consensus 169 ~yd~~vlmls 178 (549)
T PF07079_consen 169 MYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHh
Confidence 7776554444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.19 Score=48.90 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
+.+..+.-+...|+...|.++-.+. . .|+..-|-..+.+++..++|++-.++... .- .+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHH
Confidence 4555666777888888888886665 2 46888899999999999999987776432 12 2366788899999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRR 706 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 706 (729)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+. -|...+..+...|...++...+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~~~~~~~~~ 310 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCPGNNDQLIA 310 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCCCCChHHHH
Confidence 9999999998887722 356778889999999997764333 3555556666655554444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00062 Score=49.15 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=41.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
..|++++|++.|+++.+. .|.+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 456777777777777766 3556666777777777777777777777777763 4665444444
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.32 Score=51.68 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPN--VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
......-+..+.+...++-|..+...- +.++ ..........-+.+.|++++|...|-+-+.. +.|+ .++
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 334556677788888888888776543 2111 1233444445556789999998888776543 2232 234
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV 253 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 253 (729)
.-+... .....--.+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-.
T Consensus 405 ~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 444555 5666777788888888865 66667788999999999888777666544 2221 12244566777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 254 DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
++|..+-..... .......+ +-..|++++|++.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 777666554432 23333333 345778999998887774
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.4 Score=50.31 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 61 LSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNV--EEMEGLCQNMVKERYPNVREALISLV 138 (729)
Q Consensus 61 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~ 138 (729)
++.+-++..|...+.+..|.++-.|+.... ....+.|......+.+..+. +++.+.+++=..... ...-.|..+.
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA 514 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIA 514 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHH
Confidence 444556777778889999999999984332 22256777777777776433 223333333222212 2234566677
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCc----ccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNMNSGGFK----LSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK 195 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 195 (729)
+.-...|+.+-|..+++.=...+.. .+...+...+.-+.+. |+.+....++-.+..
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies-~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES-GDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence 7667889999998888754222211 1223344455555666 777777777766664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.029 Score=58.70 Aligned_cols=133 Identities=5% Similarity=-0.013 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 004813 474 VLDSISYSKLVEGLCQ--V---EKITEAVEVFCCMSKNGCSLS-SSSFNILIYGLCVMR--------KVDKAIRLRSLAY 539 (729)
Q Consensus 474 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~ 539 (729)
..+...|...+.+... . ++...|..+|+++.+. .|+ ...|..+..++.... +...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3455666666655432 1 2355677777777664 343 233333333222111 1122222222222
Q ss_pred Hc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 540 SS-GTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 540 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.. ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 112233444444444444555555555555555543 3455555555555555555555555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=52.16 Aligned_cols=94 Identities=7% Similarity=-0.040 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP--DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
..|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|+..+++.... .+.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHH
Confidence 344555555566666777777666666542121 1235666666666777777777777766665 2334445555555
Q ss_pred HHH-------hcCChhHHHHHHHH
Q 004813 661 GLW-------KEGLTSQASYLLDL 677 (729)
Q Consensus 661 ~~~-------~~g~~~~A~~~~~~ 677 (729)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 77777755544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=46.11 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=34.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 107 GLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+.|++++|...|+.+.... |.+..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777777766665 556666667777777777777777777766553
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=49.07 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=50.7
Q ss_pred HHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 487 LCQVEKITEAVEVFCCMSKNG---CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
..+.|++..|.+.+.+.+... ..++...|.....+..+.|+.++|+.--++..+.+ ..-...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776532 23334445555555667777777777766665422 00011222222344455677
Q ss_pred hHHHHHHHHHHHc
Q 004813 564 KDLLVVLAQMLVE 576 (729)
Q Consensus 564 ~~A~~~~~~~~~~ 576 (729)
++|.+-|++..+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=47.18 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 004813 616 DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG-LTSQASYLLDLMLG 680 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 680 (729)
+...|..+...+...|++++|+..|++..+. .+.+...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666677777777777777777766 3445666777777777777 57777777776654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.32 Score=47.39 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+.+..|.-+...|+...|.++-.+..- |+..-|...+.+++..++|++-.++... +-.+..|-..+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 344445566677777777777665542 7777777888888888888776665332 123356666666666
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCIL 396 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 396 (729)
+.|+..+|..++.... +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666655511 155556666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.036 Score=51.62 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL---QRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
+-|...|..|...|...|+.+.|...|....+.. .+++..+..+..++... ....++..+|++++..++. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4577788888888888888888888888777654 45566666666665433 2456777888888877544 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 67777788888888888888888875
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.087 Score=47.94 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKER--YPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.+-.....+...|++.+|...|+.+...- .+....+...++.++.+.|+++.|...++++.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444556667777777777777776652 1234456666777777777777777777776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.02 Score=51.46 Aligned_cols=138 Identities=9% Similarity=-0.048 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 274 FYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+-++++..+.-.|.+.-....++++.+...+.+......|.+.-.+.|+.+.|...|++..+..-..|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~--- 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL--- 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH---
Confidence 34556666666777777777777777766555666677777777788888888888887765444444444433222
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
......|.-.+++..|...+.++...+..++..-|.-.-+..-.|+...|++.++.|
T Consensus 256 -----------------------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 256 -----------------------MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------------------hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 223334556677788888888888877767777777666677778888899988888
Q ss_pred HHCC
Q 004813 434 VVSS 437 (729)
Q Consensus 434 ~~~~ 437 (729)
....
T Consensus 313 ~~~~ 316 (366)
T KOG2796|consen 313 VQQD 316 (366)
T ss_pred hccC
Confidence 8763
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.057 Score=55.08 Aligned_cols=54 Identities=15% Similarity=0.011 Sum_probs=30.8
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK 505 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 505 (729)
.+...+..-+.+...+..|.++|..|-+. ..+++.....+++++|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444334444555566666666665432 2455666667777777776666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0085 Score=56.43 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNI 657 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 657 (729)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+. +.+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445567777777777777764 3332 35566777777788888888888887765 11223445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 658 LINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
++..+...|++++|.++|+++.+. .|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 677777788888888888887764 45543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0093 Score=57.10 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=84.7
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSA----QSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSK----NGC-SLSS 512 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 512 (729)
..|..+.+.|.-.|+++.|+...+.-.. .|-+ .....+..+.+++.-.|+++.|.+.++.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666667777888888877655332 2211 1234567788888888888888888876533 221 1234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSS----G-TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+-+|...|.-..++++|+.++.+-... + ..-....+-+|..+|...|..++|+...+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777777777888888876653321 1 112234566788888888888888877665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=44.66 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=19.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
...|++++|++.|+++++..+. +...+..+..++...|++++|...|++++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444333221 33333333344444444444444444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.13 Score=46.83 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHH
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 671 (729)
+...|.+.|.+..|..-++.+++. .+.+. ..+..++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666666666666666665 22222 2344556666666665533
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0055 Score=44.89 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
..|.+.+++++|.++++++... .|.++..|...+.++.+.|++++|.+.+++..+. .|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHH
Confidence 4567788888888888888887 4667778888888888888888888888888874 46554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0046 Score=44.68 Aligned_cols=21 Identities=0% Similarity=-0.051 Sum_probs=7.9
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~ 575 (729)
..+...|++++|+..|++.++
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.18 Score=49.46 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.+.+++.+..-.|+.++|.+.+++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4557888888899999999999999875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.055 Score=43.71 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNV--REALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
...+-..|+.++|..+|++..+.|.... ...+..+..++...|++++|..+|++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455556666666665555543332 23444555555556666666666655543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.62 Score=47.96 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHhcCCHHHHHHHHH------HHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 279 IPMLCRENKLEEAIRLFK------MMRALDLM---PDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 279 i~~~~~~g~~~~A~~~~~------~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
..++...|+.++|..+.- .+.+-+-+ .+..+...+..-+.+...+.-|-++|.+|-. ..+++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 344555666666665531 11111111 2333444444445556667777778777742 23566
Q ss_pred HHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHH
Q 004813 350 RGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYEL 429 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 429 (729)
......+++++|..+-+..+..-+.+|-.....++...++++|.+.| .+.|+..+|..+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf---------------------hkAGr~~EA~~v 839 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF---------------------HKAGRQREAVQV 839 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH---------------------HHhcchHHHHHH
Confidence 67777888888888888877777777777777777777777776554 445777888888
Q ss_pred HHHHHHC
Q 004813 430 LGRMVVS 436 (729)
Q Consensus 430 ~~~~~~~ 436 (729)
++++...
T Consensus 840 LeQLtnn 846 (1081)
T KOG1538|consen 840 LEQLTNN 846 (1081)
T ss_pred HHHhhhh
Confidence 8887654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.88 Score=44.85 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=74.3
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF-NILIY 520 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 520 (729)
..|+..++.-.+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 445555665556666677777777776666 4566666677766554 45666666776654443 2333333 34445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYT--TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
-+...++-+.|..+|+.....- ..+ ...|..++.--..-|+...+..+-+.+.+.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5556666667777766443321 111 345666666556666666666555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.063 Score=50.65 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCh
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAG--LVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 633 (729)
.+.|++++|...|+.+++..+... ...+-.+..+|...|++++|...|+.+++.- -......+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666666666666665522211 2344455566666666666666666666531 011123344445555566666
Q ss_pred HHHHHHHHHHHhC
Q 004813 634 HLVSSGINKLVSD 646 (729)
Q Consensus 634 ~~A~~~~~~~~~~ 646 (729)
++|.++++++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.006 Score=45.41 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhC----CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSD----SE-VLD-SSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+++.+...|...|++++|+..+++..+. |. .++ ..+++.++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555666666666655555432 11 111 3456677777777777777777777654
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.12 Score=49.09 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=58.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH----
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVE-----GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPDRET---- 619 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~---- 619 (729)
+..++...+.++++++.|+...+. +.......+..|...|.+..++++|.-+..+..+. ++.--...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555555555666655555442 11122334555555566666666655554444332 21111111
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 620 -MLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 620 -~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
...+.-++...|++-.|.+.-++..+. |-. ........+.+.|...|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122333455555555555555544332 211 1222344556666666666666555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.9 Score=45.55 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=83.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-.++-+.... +.-|.-+..
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33455556667778888888888877664 56888888888899999999987776665542 334556788
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 626 GLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
+|.+.|+.++|.+++-+.... .-...+|.+.|++.+|.++-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 899999999999988766543 15777888889988887654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.041 Score=47.07 Aligned_cols=54 Identities=28% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
+..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.++|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444455555555555544444 444445555555555555555555544444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.1 Score=45.89 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH----HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV----LGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNY 207 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 207 (729)
.....-+..+.+...++-|..+-+.- ..+......+ ..-+.+. |++++|...|-+-... +.| ..
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHccc-CCh-----HH
Confidence 34455566677777777777665543 2222332333 3334455 8999888887766543 222 24
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcC
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQ-LELSFYTCIIPMLCREN 286 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 286 (729)
+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|.. .| ....+..+-+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhC
Confidence 566677777777888888888888765 55666788889999999888777766554 2221 12 233455555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 287 KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 287 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66666555443332 22222322 34557788888887766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.17 Score=42.85 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 593 SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...|++++|..+|.-+.-.+.. +...|..|..+|-..+++++|+..+......+ ..|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 4556666666666655553322 34445555555556666666666666555542 344445555666666666666666
Q ss_pred HHHHHHHh
Q 004813 673 YLLDLMLG 680 (729)
Q Consensus 673 ~~~~~~~~ 680 (729)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.027 Score=41.12 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
.++.+.++++.|...++.+...+ |.+...+.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666666666666664 445666666666666666666666666666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.041 Score=47.07 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRET 619 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 619 (729)
.++..+...|++++|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666666666666665433 556666666666666666666666665543 255665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.9 Score=42.65 Aligned_cols=30 Identities=10% Similarity=0.002 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+-..+.+++.++.-.|++++|.+..++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444555555555566666655555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.12 Score=42.29 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHh
Q 004813 612 GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDSSMYNILINGLWK 664 (729)
Q Consensus 612 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 664 (729)
.+.|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566777777777777777777777777776665 555566666666644443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.11 Score=42.47 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=34.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRAL-DLMPDELTYEELINCLC 318 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 318 (729)
...|+..+..+++.+|+..|++..|+++.+...+. +++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577777777777777777777777777766543 45555666766666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.8 Score=41.74 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVD---KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
.+...++.+|...+..+ +|..+++.+.... ...+..+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 45667777887766654 4555556664432 223445545566666788888899999988876221 334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHH-H-HH---HHHHhccCC------hHHHHHHHHHHHhC-CCCCCHHh
Q 004813 590 QSM---SEQNKLKDCALFFNVMVKAGLVPDRETM-L-SL---LHGLADGSQ------LHLVSSGINKLVSD-SEVLDSSM 654 (729)
Q Consensus 590 ~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~-~l---~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~ 654 (729)
..+ .. .....|...++.++...+.|....+ . .+ +......++ ++...+++..+.+. +.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 3345677777777766555555311 1 11 111222222 34444444433332 23334333
Q ss_pred HHH-------HHHHHHhcCChhHHHHHHHHHH
Q 004813 655 YNI-------LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 655 ~~~-------l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
-.+ -+..+.+.+++++|.++|+-.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 2445668899999999998554
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=51.37 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=41.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV--EAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
+...++.+..+|.+.|++++|+..|++.++..+.... .+|..+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456666667777777777777777776665332111 34666666777777777777777776663
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.02 Score=42.57 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA--GLV---PD-RETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554432 011 11 2344555555555566666555555544
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.54 Score=49.02 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCChHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCIL-IQSMSEQNKLKDCALFFNVMVKAG---LVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
..+.|.++++.+.+. -|+...|... .+.+...|+.++|++.|++..... .+.....+--+...+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344555555555544 3444443322 233444555555555555443210 0111223333444455555555555
Q ss_pred HHHHHHHhC
Q 004813 638 SGINKLVSD 646 (729)
Q Consensus 638 ~~~~~~~~~ 646 (729)
+.|.++.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.11 Score=43.94 Aligned_cols=88 Identities=5% Similarity=-0.075 Sum_probs=55.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 45667777777777776665443 455556666666667777777777776655432 1333344556667777777777
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
+..|+..++.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777663
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2 Score=41.70 Aligned_cols=221 Identities=12% Similarity=0.022 Sum_probs=113.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHh--HHHHHHHHh---hcCC
Q 004813 384 CNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS-VVPDCAT--YSAFVLGKC---KLCN 457 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~--~~~ll~~~~---~~~~ 457 (729)
.+.|..+.|.++-++....-+.-...+...+...|..|+++.|+++++.-+... +.++..- -..|+.+-. -..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 456777777777766666555455566677777777777777777777654432 2333221 112222111 1123
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSIS-YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
...|...-.+..+. .||..- -..-...+.+.|++.++-.+++.+-+. .|.+.++...+ +.+.|+. ++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCCc--HHHHHH
Confidence 44455444444433 233222 222345666777777777777777665 34444443222 3334432 222222
Q ss_pred HH---HHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 004813 537 LA---YSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-EQNKLKDCALFFNVMVKAG 612 (729)
Q Consensus 537 ~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~ 612 (729)
+. .... +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++.+.+.+.++.-
T Consensus 317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22 1211 233444445555556666666665555544433 555666655555543 3366666766666666543
Q ss_pred CCC
Q 004813 613 LVP 615 (729)
Q Consensus 613 ~~p 615 (729)
-.|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.6 Score=40.01 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=29.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCC---CcccchHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 384 CNAGKFFLAKCILEKMADRKIA---DCDSWNIPIRWLCENEEIRKAYELLGRMVVS 436 (729)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 436 (729)
.+.|++++|.+.|+.+..+.+. ...+.-.++.++.+.++++.|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3556666666666666655444 2233344445555566666666666665554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.099 Score=52.05 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+...|+.+..+|...|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|+..++++.+.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 577899999999999999999999999998 46664 358999999999999999999999999862 11 222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 004813 657 ILIN--GLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 657 ~l~~--~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
.+.. .+....+..+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122334466777777777664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.7 Score=40.78 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=87.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCC
Q 004813 103 ILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRG 182 (729)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (729)
...+...|++.+|..+|....... +.+......++.+|...|+++.|..++..+...--.........-|..+.+. ..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-AA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-hc
Confidence 345667788888888888877765 4456777778888888888888888888774332122222223334445444 44
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCC
Q 004813 183 FADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK-GCCPNSRTFEIVIKGLIANSR 252 (729)
Q Consensus 183 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 252 (729)
..+...+-.++-.. +-|...-..+...+...|+.+.|++.+-.+.+. .-.-|...-..++..+.-.|.
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 45444544444442 235556666777777778888877766655543 112244455555655555553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.2 Score=37.58 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004813 171 VVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIAN 250 (729)
Q Consensus 171 ~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 250 (729)
.++..+... +........++.+...+ ..+...++.++..|++.+ .....+.++. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~-~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKR-NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555555 66666667777666655 245666677777776543 2333343332 12334444566666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004813 251 SRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE-NKLEEAIRLFKMMRALDLMPDELTYEELINCLC 318 (729)
Q Consensus 251 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 318 (729)
+-++++.-++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666665532 23333344434 6666666666542 24445665555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.24 Score=45.71 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChh
Q 004813 594 EQNKLKDCALFFNVMVKAGL--VPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTS 669 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 669 (729)
+.|++..|.+.|...++... .-....+..|..++...|++++|..+|..+.+. ..+.-+..+--|+....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555555310 001123334555555555555555555555554 11122344555555555666666
Q ss_pred HHHHHHHHHHhC
Q 004813 670 QASYLLDLMLGK 681 (729)
Q Consensus 670 ~A~~~~~~~~~~ 681 (729)
+|..+|+++.++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2 Score=38.88 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHH
Q 004813 95 TADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLG 174 (729)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 174 (729)
-...|.....+|..++++++|...+.+..+-. ..+...| .... .++.|.-+.+++.+. +--...|+.-..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hAAK------ayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HAAK------AYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HHHH------HHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34556666677777888888887776665321 1122122 1122 223333344444321 122233444555
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCChhhHHHHHHHHHh
Q 004813 175 AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHK---KG--CCPNSRTFEIVIKGLIA 249 (729)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~--~~p~~~~~~~li~~~~~ 249 (729)
.|..+ |.++.|-..+++.-+. ...-++++|+++|++... .+ .+--..-+...-+.+.+
T Consensus 100 lY~E~-GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVEC-GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHh-CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 66666 6666666655554321 122233344444433211 11 00111223334445555
Q ss_pred cCChhHHHHHHHHHHH----CCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcC
Q 004813 250 NSRVDDSVSILGEMFD----LGIQLEL-SFYTCIIPMLCRENKLEEAIRLFKMMRALD---LMPDELTYEELINCLCENL 321 (729)
Q Consensus 250 ~g~~~~a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~ 321 (729)
...+++|-..+..-.. ..--++. ..|...|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 5555555444433221 1111222 335555666666778888888887754432 123455666677666 456
Q ss_pred ChhHHHHHH
Q 004813 322 RLDDANDIL 330 (729)
Q Consensus 322 ~~~~a~~~~ 330 (729)
+.+++..++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 666655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.29 Score=39.04 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=51.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCH--HhHHHHHHHHHhcCC
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD-SEVLDS--SMYNILINGLWKEGL 667 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~ 667 (729)
+++..|+++.|++.|.+.+.. .+-....||.-..++.-+|+.++|++=+++..+. |..... ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666653 2224556666666666666666666666666665 211111 123344455566666
Q ss_pred hhHHHHHHHHHHhCC
Q 004813 668 TSQASYLLDLMLGKG 682 (729)
Q Consensus 668 ~~~A~~~~~~~~~~g 682 (729)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.4 Score=39.57 Aligned_cols=223 Identities=15% Similarity=0.016 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSKN-GCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
+....+...+......... .....+......+...+++..+...+...... ........+..+...+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444555444443221 12455566666667777777777777766542 123445555666666666777777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 534 LRSLAYSSGTSYTTSTYTKIML-GLVKLQRAKDLLVVLAQMLVEGC--ALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776644222 112222222 56777888888888887755321 11333344444446667788888888888776
Q ss_pred CCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 611 AGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 611 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.. .. ....+..+...+...++++.|...+...... .+.....+..+...+...|.++++...+++....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh-CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42 22 3566677777777778888888888888776 2223455556666666667788888888877764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.1 Score=36.06 Aligned_cols=65 Identities=23% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGW 683 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 683 (729)
..+...+..+..+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..+|-+++.+.-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555566666666666666666543 355666666666677777777777666666666664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.7 Score=36.76 Aligned_cols=132 Identities=8% Similarity=0.067 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 58 RHNLSPDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISL 137 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 137 (729)
.+.+.++.++..+...+.+.....+++++.... +.++...+.++..+++... ......+.. . .+......+
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~ 75 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKV 75 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHH
Confidence 456677888888888888889999998887664 3567788888888877533 333333331 1 112234446
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 138 VFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF 213 (729)
Q Consensus 138 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 213 (729)
++.|.+.+.++++.-++.++.. +...+..+....++++.|.+.+.+- .+...|..++..+.
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6667777777777777666521 1122222222214566666655431 14455665555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.9 Score=39.00 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 445 YSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 445 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
|.....+|-..+++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. +--...|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445555566666666655554421 111111111 122344444455555442 1122334455555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHHhcCCHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE---GCA--LDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~~~~~ 599 (729)
+|.++.|--.+++.-+ .....++++|+++|++.... +-. --...+...-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666655554444432 12344566666666665432 100 11223444455667777777
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChhHH
Q 004813 600 DCALFFNVMVKA----GLVPDR-ETMLSLLHGLADGSQLHLVSSGINKLVSD---SEVLDSSMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 600 ~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 671 (729)
+|-..+.+-... .-.++. ..|...|-.+....++..|.+.++.-.+. .-+.+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 766665543321 111221 23445555566667788888888775444 1223445666666665 34776666
Q ss_pred HHHHH
Q 004813 672 SYLLD 676 (729)
Q Consensus 672 ~~~~~ 676 (729)
..++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 55544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.37 Score=44.52 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccc-HHhHHHHH
Q 004813 98 TYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG-GFKLS-VDVFNVVL 173 (729)
Q Consensus 98 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~ll 173 (729)
.|+..+. +.+.|++..|...|...++... .-...++..|..++...|+++.|..+|..+.+. +-.|. +..+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3544443 3455666666666666665531 223455666666666666666666666666432 11122 23344444
Q ss_pred HHHHhcCCChhHHHHHHHHHHHC
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
....+. |+.+.|...|+++.+.
T Consensus 223 ~~~~~l-~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRL-GNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHH
Confidence 445555 6666666666666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.95 E-value=5.4 Score=41.38 Aligned_cols=187 Identities=10% Similarity=-0.072 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+..+|...+..-.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+--.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3445666666666677777777776666531 111223333333333344666666666555544332222221111111
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHH-HHh
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAY-CILIQSMSEQNKLKDCA---LFFNVMVKAGLVPDR--ETMLSLLH-GLA 628 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~p~~--~~~~~l~~-~~~ 628 (729)
-.-..|++..|..+++.+.+.- |+..-. ..-+....+.|+.+.+. +++.........+.. ..+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 2234567777777777776652 333221 12233445566666665 333333221111111 11111111 122
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 666 (729)
-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 356677777777777776 5666666777776666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.57 Score=45.76 Aligned_cols=93 Identities=13% Similarity=-0.011 Sum_probs=60.2
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCC----CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQK----RFQHT---------ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREA 133 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 133 (729)
...+-+.|++..|..-|+.+..-- .+++. ..++..+.-.+.+.+++..|+...+..+..+ +++..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 445667889999999888865421 11111 2344555566666777777777777776666 566666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 134 LISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 134 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
+..-..+|...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666667777777777777777777663
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.55 Score=45.86 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
++.+...|.+.+++..|++.-.+.+..+.. |....---..+|...|+++.|+..|+++.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444455555555555555555544322 444444444555555555555555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.8 Score=45.27 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCC
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKR 91 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~ 91 (729)
++.++.-.|+-+.+++.+....+..+
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~ 219 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSEN 219 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCC
Confidence 34444455666666666666554433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.59 Score=47.96 Aligned_cols=56 Identities=7% Similarity=0.164 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 236 NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRA 300 (729)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (729)
+...|..|.....+.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544433 34444444445555444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=8 Score=43.65 Aligned_cols=360 Identities=13% Similarity=0.120 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH-hCCC--cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 004813 135 ISLVFSFVNHYRVNGAMRVLVNMN-SGGF--KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVD--TLNYLL 209 (729)
Q Consensus 135 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li 209 (729)
...++-++..+++.+|.++..+-+ ..++ .-++..|..-+.++.+..++.+-....+..+.+..+.-+.. ++.+-.
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k 760 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGK 760 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccc
Confidence 344455566667777766655441 1111 22344444445555555455555555555555432221111 111111
Q ss_pred HHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004813 210 EVLFET----NRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANS--RVDDSVSILGEMFDLGIQLELSFYTCIIPMLC 283 (729)
Q Consensus 210 ~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (729)
..|... +..+...+..+....+ ..|+ .-...+|.++.+.+ .++.++........... ...+=.++ ...+
T Consensus 761 ~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~al-~hll 835 (1265)
T KOG1920|consen 761 QVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEAL-KHLL 835 (1265)
T ss_pred eeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHHH-HHHH
Confidence 122221 2233333444333332 2445 33445677777766 56666666665554111 11111111 1111
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 004813 284 RENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVN 363 (729)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 363 (729)
- +-.+-.+|+..+.. -|. =-+++-+-..+.|+.+=+-+++++.+. +++..-| ..=...++++.|+.
T Consensus 836 ~---Lvdvn~lfn~ALgt---YDl--~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF----~ID~~L~ry~~AL~ 901 (1265)
T KOG1920|consen 836 F---LVDVNELFNSALGT---YDL--DLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF----KIDDYLKRYEDALS 901 (1265)
T ss_pred h---hccHHHHHHhhhcc---cch--HHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe----eHHHHHHHHHHHHH
Confidence 0 11112222222110 000 001222233344455555555544421 1111111 00111334444444
Q ss_pred HHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004813 364 FLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCA 443 (729)
Q Consensus 364 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 443 (729)
-+.... ...+...++.--+.|.+.+|..++..-.+. -...|.+....+.....+++|.-.|+..-+
T Consensus 902 hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------- 967 (1265)
T KOG1920|consen 902 HLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERCGK-------- 967 (1265)
T ss_pred HHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHhcc--------
Confidence 444333 223344555555566666666555432222 233455555555556666666555554311
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC 523 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (729)
....+.+|-..|++.+|..+..++....-. -..+-..|+.-+...++.-+|-++..+.... | ...+..|+
T Consensus 968 -lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ 1037 (1265)
T KOG1920|consen 968 -LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLC 1037 (1265)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHh
Confidence 112245566666677766666655432100 1111244555556666666666666665542 1 12233344
Q ss_pred hcCCHHHHHHHHHH
Q 004813 524 VMRKVDKAIRLRSL 537 (729)
Q Consensus 524 ~~~~~~~A~~~~~~ 537 (729)
+...+++|.++...
T Consensus 1038 ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1038 KAKEWEEALRVASK 1051 (1265)
T ss_pred hHhHHHHHHHHHHh
Confidence 55556666555433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.4 Score=42.85 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLV-PDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+..++.+.|+.++|.+.+.+|.+.... -+..+...|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344444555555666555555543111 1223444555555555566666555555543
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.8 Score=39.82 Aligned_cols=153 Identities=8% Similarity=-0.063 Sum_probs=93.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHH
Q 004813 419 ENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYS----KLVEGLCQVEKIT 494 (729)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 494 (729)
..|+..+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++.+... ..+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4677777777788877653 446677777777788888888777777777654 223333332 2333445678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 495 EAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS---YTTSTYTKIMLGLVKLQRAKDLLVVLA 571 (729)
Q Consensus 495 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 571 (729)
+|++.-++..+.+ +.|.-...+..+.+...|++.++.++..+-...=-. .-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888777754 445566667777777778888887775543321000 001112222223445577888888877
Q ss_pred HHH
Q 004813 572 QML 574 (729)
Q Consensus 572 ~~~ 574 (729)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.1 Score=37.20 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=26.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
.+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555555555554111 12233334555555555555555555555553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.9 Score=34.81 Aligned_cols=66 Identities=9% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
.......++.+...|+-++-.+++.++.+ +-.+++.....+..+|.+.|+..++.++++++.+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556667777777777777777665 2356666777777777777777777777777777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.21 Score=45.75 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH
Q 004813 579 ALDVEAYCILIQSMSEQ-----NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS 653 (729)
Q Consensus 579 ~p~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 653 (729)
+-|-.+|...+..+... +..+-.-..+..|.+-|+.-|..+|+.|+..+=+..-.. ..+|++.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~---------- 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKV---------- 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHH----------
Confidence 34666666666665432 334444445566666677777777777776654332110 0111111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 705 (729)
.--|- ..-+-++.++++|...|+.||..+-..|++++.+.+.+-.
T Consensus 132 -----F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~ 176 (406)
T KOG3941|consen 132 -----FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTK 176 (406)
T ss_pred -----HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHH
Confidence 11111 1234578889999999999999999999999988776543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.4 Score=36.09 Aligned_cols=139 Identities=10% Similarity=0.083 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 95 TADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPN-VREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
+-..|...+. +++.+..++|+..|..+.+.|... ..-............|+...|...|.++-.....|-..-=..-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444544443 466777888888888887776432 22334445556677788888888888885544334332111111
Q ss_pred ---HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004813 174 ---GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP 235 (729)
Q Consensus 174 ---~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 235 (729)
-.+... |.++.+....+.+...+.+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 133455 8888888888888776655556666777777788888989988888877643333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.59 E-value=6 Score=43.05 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc-
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQS-LVLDSISYSKLVEGLCQ- 489 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 489 (729)
.....+.-.|+++.|++.+-+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 445666778889999888876 2233556666666665443322222211 2222111 01122456777777775
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 004813 490 --VEKITEAVEVFCCMSKN 506 (729)
Q Consensus 490 --~g~~~~A~~~~~~~~~~ 506 (729)
..+..+|.+++--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45788888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.26 Score=45.17 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004813 220 SALDQFRRMHKKGCCPNSRTFEIVIKGLIANS 251 (729)
Q Consensus 220 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 251 (729)
=+++++++|...|+.||-.+-..|++++.+.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 34555555555555555555555555554444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=4.9 Score=38.75 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNY---EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
++..++.++...+.. ++|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 445556666665553 4455555555443222 3444445566666677788888888888764 1223344444444
Q ss_pred HHHh--cCCHHHHHHHHHHHHHcCCCCC
Q 004813 521 GLCV--MRKVDKAIRLRSLAYSSGTSYT 546 (729)
Q Consensus 521 ~~~~--~~~~~~A~~~~~~~~~~~~~~~ 546 (729)
.+.. ......|...++.+....+.|.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4421 1223445555555544433333
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=4.1 Score=37.90 Aligned_cols=202 Identities=17% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQ-SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
...+......+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555555666666666666666665542 122344555555666666667777777777776643222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 521 -GLCVMRKVDKAIRLRSLAYSSGT--SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 521 -~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56777888888888777754221 122333333444456677888888888887775222135667777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 598 LKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888874 333 344445555555666788888888888776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.8 Score=35.69 Aligned_cols=141 Identities=9% Similarity=0.114 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH-HHHHhcCCChhHHHHHHHHHHHCCCCCCHH-HH
Q 004813 128 PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL-GAIVEEKRGFADFVFVYKEMVKAGIVPNVD-TL 205 (729)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~ 205 (729)
..+...|...++. .+.++.++|+.-|..+.+.|..--+..-..-. ....+. |+-..|...|+++-.....|-.. -.
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHH
Confidence 3445566666653 57788888999999988776554333322222 233444 88899999999988765555443 22
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004813 206 NYLL--EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQL 270 (729)
Q Consensus 206 ~~li--~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 270 (729)
..|= -.++..|.+++.....+.+-..+.+--...-..|.-+-.+.|++..|.+.|.++.+....|
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2222 2345678888888888777665543334444556666778899999999999888643333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.92 Score=46.55 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=55.1
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
.+...-.++++.+.+..+.-.--+.. .....+.++..+-+.|.++.|+.+..+-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34444555666665555421111111 13345555555555666666555533211 11223334555
Q ss_pred hhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 147 VNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFR 226 (729)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 226 (729)
++.|.++.++. .+...|..|-....+. |+++.|++.|++..+ |..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~-g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQ-GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHT-TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHc-CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 55555443322 2344555555555555 555555555544432 3344444445555544444444
Q ss_pred HHHh
Q 004813 227 RMHK 230 (729)
Q Consensus 227 ~m~~ 230 (729)
....
T Consensus 398 ~a~~ 401 (443)
T PF04053_consen 398 IAEE 401 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.38 E-value=7.4 Score=40.43 Aligned_cols=117 Identities=9% Similarity=0.087 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHH
Q 004813 113 EEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKE 192 (729)
Q Consensus 113 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 192 (729)
+.+..+++.++.. .|.--.-|......=.+.|..+.+.++|++-... ++.+...|...+..+....|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3344445544433 1333334444444445666667777777766542 4566666666666655555666666666666
Q ss_pred HHHC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 193 MVKA-GIV-PNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 193 ~~~~-g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
..+. |.. .....|...|..-..++++.....++++.++.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6543 211 12334555565556667777777777776653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.2 Score=37.44 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 106 LGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.++++.|+..+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455666666666666654421 223455555556666666666666666666443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.31 E-value=7.7 Score=43.79 Aligned_cols=80 Identities=9% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE--TMLSLLHGLADGSQ 632 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 632 (729)
+-+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++... -|.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455566665555543211 12245566666666666666555421 1111 11345555666666
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.-+|-++..+....
T Consensus 1015 h~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD 1028 (1265)
T ss_pred chhHHHHHHHHhcC
Confidence 66666666665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=3.1 Score=42.01 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
.+|.++-++..+.+.. |......+..+....++++.|...|++... +.|| ...|......+...|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444433 455544555545555555555555555554 3344 23333334444445555555555555
Q ss_pred HHhC
Q 004813 643 LVSD 646 (729)
Q Consensus 643 ~~~~ 646 (729)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.2 Score=42.05 Aligned_cols=188 Identities=11% Similarity=-0.060 Sum_probs=117.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCh
Q 004813 488 CQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTY----TKIMLGLVKLQRA 563 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 563 (729)
.-.|+..+|...++++.+. .+.|...+..--.+|...|+.+.-...++++...= .++...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888888888875 46677888888888998999888888888887541 2343322 3333445678889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA---GLVPDRETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
++|++.-++..+.+.. |...-......+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988888776533 6666666777777888899988887665432 11111223334444456678888898888
Q ss_pred HHHH-hCCCCCCHHh---HHHHHHHHHhcCChhHHHHHHHHH
Q 004813 641 NKLV-SDSEVLDSSM---YNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 641 ~~~~-~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
++=+ ..-.+.|.+. |..+.....+...+.+-..+-+.+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 7543 3323334432 222333334444444444433333
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=7.3 Score=39.47 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 004813 544 SYTTSTY-TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS--EQNKLKDCALFFNVMVKA-GLVPDRET 619 (729)
Q Consensus 544 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~-~~~p~~~~ 619 (729)
.++..++ +.+++-+...|-+++|...+..+... +.|+...|..++..-. ..-+...+.++|+.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444433 45566666777777777777777665 4556666666665422 122366777777777765 5 56667
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
|...+.-=...|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 766666666777777777776666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.8 Score=35.95 Aligned_cols=84 Identities=8% Similarity=-0.016 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVL 173 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 173 (729)
+..+..-.....+.|++++|.+.|+.+...-. +-...+...++.+|.+.+++++|...+++.++.........|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33444445566677888888888888876621 2355677778888888888888888888887765433334466666
Q ss_pred HHHHhc
Q 004813 174 GAIVEE 179 (729)
Q Consensus 174 ~~~~~~ 179 (729)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.06 E-value=3 Score=40.06 Aligned_cols=125 Identities=11% Similarity=0.012 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHH-
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSY-----TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALDV-EAYC- 586 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~-~~~~- 586 (729)
+..++...+.++++++.|+...+..... ...++..|...|....++++|.-+..+..+. ++. |. .-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3444444445555555555543321111 1223445555555555555555444433321 211 11 1111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHH
Q 004813 587 ----ILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKL 643 (729)
Q Consensus 587 ----~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (729)
.+.-++...|++..|.+.-++..+. |-.+. ......+.+.|...|+.+.|+.-++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1222344455555555554443332 21111 123334455555566665555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.98 E-value=2 Score=43.42 Aligned_cols=162 Identities=11% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFF 605 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 605 (729)
.+...-++.-+++.+. .|+....-.++ +-.......+|++++++..+.|-. .+ .+....+..-..+
T Consensus 182 Rnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SL-------GKSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hh-------chhhhhhcccchh
Confidence 3444444444444443 45543322222 222344578888888887765321 11 1100001111122
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 606 NVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
+........|-..+-..+..++.+.|+.++|++.++++.+.... .+..+...|+.+|...+.+.++..++.+--+.. -
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-l 326 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-L 326 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-C
Confidence 22222223333444456777888999999999999999876211 234477889999999999999999998864322 3
Q ss_pred CCH--HHHHHHHhhhhhcch
Q 004813 685 PDA--TTHGLLVGSSVGEEI 702 (729)
Q Consensus 685 p~~--~~~~~ll~~~~~~~~ 702 (729)
|.. ..|...+-..++.++
T Consensus 327 pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGD 346 (539)
T ss_pred CchHHHHHHHHHHHHHhhcc
Confidence 443 345555544444433
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.13 Score=32.84 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
|..+...|...|++++|.++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=3 Score=42.08 Aligned_cols=110 Identities=10% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
.+..+|.++.++.++.+-. |......+..+....++.+.|...|++.... .|.....|......+.-+|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH-STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456788888888886433 6777777777778888899999999999997 3556678889999999999999999999
Q ss_pred HHHHhCCCCCCH---HHHHHHHhhhhhcchhhhhhhc
Q 004813 676 DLMLGKGWVPDA---TTHGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 676 ~~~~~~g~~p~~---~~~~~ll~~~~~~~~~~~~~~~ 709 (729)
++..+. .|-- .....-+..|+..+-.+....+
T Consensus 396 ~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 396 DKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 997763 4533 4455556677788877777655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.75 Score=36.85 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=58.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA-GLVPDRE---TMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g 631 (729)
+++..|+.+.|++.|.+.+..-++ +...||.-..++.-+|+.++|++=+++.++. |-+ ... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 455667777777777777765333 5667777777777777777777777777765 222 222 2223333466677
Q ss_pred ChHHHHHHHHHHHhCC
Q 004813 632 QLHLVSSGINKLVSDS 647 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~ 647 (729)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777877777776665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.71 Score=43.42 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATTHGLL 693 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 693 (729)
++..++..+...|+.+.+.+.++++.+. .+-+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677777788888888888888887 567778888888888888888888888877664 5788888777776
Q ss_pred Hhhh
Q 004813 694 VGSS 697 (729)
Q Consensus 694 l~~~ 697 (729)
....
T Consensus 234 ~~~~ 237 (280)
T COG3629 234 EEIL 237 (280)
T ss_pred HHHh
Confidence 6663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=6.5 Score=37.01 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=23.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcC
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRALD-LMPDELTYEELINCLCENL 321 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~ 321 (729)
|...-..+...+...|+.+.|.+.+-.+..++ -.-|...-..|+..+.--|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 34444445555555555555555444443321 1123334444555544444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.16 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|..|+..|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.52 E-value=7.3 Score=37.69 Aligned_cols=85 Identities=7% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHccCC--
Q 004813 424 RKAYELLGRMVVSSVVPDCATYSAFVLGKCK--LC----NYEDALRVFRQVSAQSL---VLDSISYSKLVEGLCQVEK-- 492 (729)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 492 (729)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666777766666555543322222 11 24456666777766532 2333444444332 2222
Q ss_pred --HHHHHHHHHHHHHCCCCC
Q 004813 493 --ITEAVEVFCCMSKNGCSL 510 (729)
Q Consensus 493 --~~~A~~~~~~~~~~~~~~ 510 (729)
.+.++.+++.+.+.|+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 234455555555555444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.47 E-value=14 Score=40.44 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChhh
Q 004813 78 SALKIFKWVSIQKRFQHT--ADTYCKMILKLG-LAGNVEEMEGLCQNMVKERYPNVR-----EALISLVFSFVNHYRVNG 149 (729)
Q Consensus 78 ~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~ 149 (729)
.|++.++.+.++...+|. ..++-.+..++. ...+++.|+..+++.+..--.++- .+...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 445555555443322222 233444455554 455666666666655333211111 12223344444444333
Q ss_pred HHHHHHHHHhCC----CcccHHhHHHH-HHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHH
Q 004813 150 AMRVLVNMNSGG----FKLSVDVFNVV-LGAIVEEKRGFADFVFVYKEMVKAG---IVPNVDTLNYLLEVLF--ETNRIE 219 (729)
Q Consensus 150 A~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~~~~~ 219 (729)
|...+++.++.- ..+-...|..+ +..+... +++..|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 555555543221 11222222222 2222233 45666666665554321 1222333333333332 234445
Q ss_pred HHHHHHHHH
Q 004813 220 SALDQFRRM 228 (729)
Q Consensus 220 ~A~~~~~~m 228 (729)
++.+.++++
T Consensus 197 d~~~~l~~~ 205 (608)
T PF10345_consen 197 DVLELLQRA 205 (608)
T ss_pred hHHHHHHHH
Confidence 555555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.28 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALI 135 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 135 (729)
+..+...+.+.|++++|+++|+++++.. |.+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 3444455555555555555555555543 33444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.08 E-value=5.3 Score=34.45 Aligned_cols=134 Identities=12% Similarity=0.081 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 117 GLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
+.++.+.+.+++++...+..++..+.+.|++.....++ ..++-+|.......+-.+. +.+..+.++=-.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44555666677777777777777777777765544443 3334444443333332222 2233333333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 197 GIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 197 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113556667777777877777777664322 222334456666666665555555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.04 E-value=10 Score=38.15 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....+|..++..+.+.|.++.|...+.++...+... ++.....-++.+...|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888888999999999999998888753111 445566678888888999999998888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.2 Score=41.92 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRETMLSL 623 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 623 (729)
++..++..+...|+.+.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3445566666667777777777777666544 666677777777777777777777666654 2666666655554
Q ss_pred HHH
Q 004813 624 LHG 626 (729)
Q Consensus 624 ~~~ 626 (729)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.76 E-value=16 Score=39.25 Aligned_cols=273 Identities=12% Similarity=0.024 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHhhcC
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRW-----LCENEEIRKAYELLGRMVV-------SSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~ll~~~~~~~ 456 (729)
...|.++++...+.|.. ..-..+..+ +....+.+.|+..|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~--~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS--EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcch--HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 56777888877777643 222222222 3356688888888888766 44 3334555555665532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 004813 457 -----NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLC----VMR 526 (729)
Q Consensus 457 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 526 (729)
+.+.|..++....+.|.. +....-..+..... ..+...|.++|....+.|. ...+-.+..+|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCC
Confidence 566688888777776643 44333222222222 2456788888888877763 222222222222 234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHH---Hh----cCCH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI-QSM---SE----QNKL 598 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~----~~~~ 598 (729)
+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.|.. ...+-...+ ... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccch
Confidence 6777888888877776 3332222222233333 6677777666666665543 222222111 111 11 1244
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChhH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADG----SQLHLVSSGINKLVSDSEVLDSSMYNILINGLW----KEGLTSQ 670 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~ 670 (729)
..+...+.+....| +......+...|... .+.+.|...+....+.+ ...+|+ +...+- ..+ +..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHH
Confidence 55555555555433 334444455444432 34666777666666653 222232 333322 223 566
Q ss_pred HHHHHHHHHhC
Q 004813 671 ASYLLDLMLGK 681 (729)
Q Consensus 671 A~~~~~~~~~~ 681 (729)
|.++++...+.
T Consensus 528 a~~~~~~~~~~ 538 (552)
T KOG1550|consen 528 AKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHhc
Confidence 66666666553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.13 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 640 INKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
+++.++. -|.++..|+.++..|...|++++|+
T Consensus 2 y~kAie~-~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL-NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH-CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555 3667788888888888888888875
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=13 Score=37.84 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
|.....+++..+..+-...-...+..+|...| -+-..+..++++|... ..++-..+|+++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444455555555555555555555555533 3444555555555554 33444555555544331 22222222333
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~ 575 (729)
-|.+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3332 444455555554443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=22 Score=38.89 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHh
Q 004813 89 QKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDV 168 (729)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 168 (729)
.++.+.....-...+..+++.+++....+++.. .+.+.........+....|+.++|......+=..| ...+..
T Consensus 92 ~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~ 165 (644)
T PRK11619 92 NPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNA 165 (644)
T ss_pred CCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChH
Confidence 333444444445555566666666666653211 24455555666666777777666655555553222 223344
Q ss_pred HHHHHHHHHhc
Q 004813 169 FNVVLGAIVEE 179 (729)
Q Consensus 169 ~~~ll~~~~~~ 179 (729)
++.++..+.+.
T Consensus 166 cd~l~~~~~~~ 176 (644)
T PRK11619 166 CDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHc
Confidence 44444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.39 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD 686 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 686 (729)
.+|..++..|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4577788888888888888888888776 3454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.83 E-value=7.8 Score=33.44 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 004813 188 FVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL- 266 (729)
Q Consensus 188 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 266 (729)
+.+..+.+.+++|+...|..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 34444556677777778888888888877755433 3444455566655554443222 2333334433333321
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 267 GIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+ ..+..+++.+...|++-+|+++....... +......++.+..+.+|...=..+++
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12555666777778887777777664321 22223345555555555444333333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.58 E-value=14 Score=35.81 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
..+.++++.+.+.|++.....|..++
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35566666666666555555554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.40 E-value=8.2 Score=32.85 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhc
Q 004813 108 LAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEE 179 (729)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (729)
+.++.++++.+++-+.-.. |.....-..-...+...|++.+|..+|+.+.+. .|.......|+..|...
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 4455555555555554443 222333333334445555555555555555432 23333344444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.45 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|..+...+...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.24 E-value=27 Score=38.49 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=121.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHH-HHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 004813 418 CENEEIRKAYELLGRMVVSSVVPDCA-------TYSAFVL-GKCKLCNYEDALRVFRQVSAQ----SLVLDSISYSKLVE 485 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 485 (729)
....++.+|..++.++...-..|+.. .++.+-. .....|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44678888888888876543232221 2222221 233568888888888777653 23445667777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCCHHHH--HHHHHHHHHcC---CC---CCHHhHHH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSS---FNILIY--GLCVMRKVDKA--IRLRSLAYSSG---TS---YTTSTYTK 552 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~~~~~~A--~~~~~~~~~~~---~~---~~~~~~~~ 552 (729)
+..-.|++++|..+..+..+..-.-+... |..+.. .+...|+...+ ...|....... .+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988887765321223333 333322 34456633332 33333332221 01 12234444
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 004813 553 IMLGLVKLQ-RAKDLLVVLAQMLVEGCALDVEAY--CILIQSMSEQNKLKDCALFFNVMVKAGLVP----DRETMLSLLH 625 (729)
Q Consensus 553 l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 625 (729)
++.++.+.. ...++..-+.--......|-...+ ..|+......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555554421 122222222222222233322222 267778888999999999999988753332 2222222222
Q ss_pred --HHhccCChHHHHHHHHH
Q 004813 626 --GLADGSQLHLVSSGINK 642 (729)
Q Consensus 626 --~~~~~g~~~~A~~~~~~ 642 (729)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23457888888777766
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=11 Score=33.70 Aligned_cols=99 Identities=12% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHc-------CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 004813 58 RHNLSPDHLIRVLDN-------TNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNV 130 (729)
Q Consensus 58 ~~~~~~~~~~~~l~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 130 (729)
...++.+..+..+-. .|-+..|.--|.++.... |.-+.+||-+.--+...|+++.|.+.|+...+.+...+
T Consensus 56 ~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 56 SRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 345666665555543 345566666666665543 44467788777778888888888888888888774444
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 131 REALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
-...+.-|..| --|+++-|.+-|.+.-+
T Consensus 134 Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 134 YAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 44444444333 56788888777766643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.05 E-value=8.9 Score=32.64 Aligned_cols=53 Identities=8% Similarity=-0.145 Sum_probs=24.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 453 CKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.+.++.+++..++..+.-..+. ....-..-...+...|++++|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666555543222 1111111222344556666666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.57 Score=28.21 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.6 Score=38.09 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 004813 507 GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG---TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVE 583 (729)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 583 (729)
|.+....+...++..-....+++.+...+-+++..- ..++.. -..+++.+.+ -++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444555566666666666777888888777776531 112211 1223333333 35668888888878888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887777654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.011 Score=50.30 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=27.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 174 GAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFR 226 (729)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 226 (729)
..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333334 5555555555555554444455556666666666655555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.41 E-value=3.8 Score=36.13 Aligned_cols=60 Identities=5% Similarity=-0.025 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD--VEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
+..+..-|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444555555555555555444322211 2223344444444555555555444444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.9 Score=36.87 Aligned_cols=97 Identities=15% Similarity=-0.073 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHH--H
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYN--I 657 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~--~ 657 (729)
..+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++...-.. .|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677888999999999999999999998644443 356678888888999999999998887765111 1222111 1
Q ss_pred --HHHHHHhcCChhHHHHHHHHHH
Q 004813 658 --LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 658 --l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
-+-.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1223345689999888876654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.98 E-value=37 Score=36.62 Aligned_cols=248 Identities=13% Similarity=0.068 Sum_probs=138.8
Q ss_pred hcCChhHHHHHHHHHHh-------CCCCCcccchHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 385 NAGKFFLAKCILEKMAD-------RKIADCDSWNIPIRWLCENE-----EIRKAYELLGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 385 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
...+.+.|...|+.+.+ .+ .......+..+|.+.. +.+.|+.++.+....| .|+...+...+...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 44455556665555544 33 4556677777777643 6677889888888877 44555554444333
Q ss_pred hh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 453 CK-LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC--QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD 529 (729)
Q Consensus 453 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (729)
.. ..+...|.++|....+.|.. +...+.+++.... -..+...|..++.+..++| .|....-...+..+.. +.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 33 35678899999998888754 2222222222111 2347888999999998887 3332222233333444 7777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHH---Hh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGL---VK----LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ----NKL 598 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~ 598 (729)
.+.-.+..+.+.|.......-..++... .. ..+.+.+...+......| +......+.+.|..- .++
T Consensus 415 ~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 415 TALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred HHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCCh
Confidence 7777766666665322221111111111 11 124556666666666554 444555555555432 357
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHhC
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGL----ADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~ 646 (729)
+.|...|......+ ....-.+...+ .... +..|.+++++..+.
T Consensus 492 ~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 492 EKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 77887777777654 22222333222 2233 67777777777765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=6.4 Score=37.19 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=68.3
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS---VVP--DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISY 480 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (729)
...+-...+..-...++++.+...+-+++..- ..| +.+++..++.. -++++++.++..=++.|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhH
Confidence 44555555555566777888888877775431 112 23333333332 3567888888888888999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
+.+++.+.+.+++.+|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888877654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.94 E-value=19 Score=33.28 Aligned_cols=82 Identities=10% Similarity=0.178 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHhhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHccC
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDC---ATYSAFVLGKCKLCNYEDALRVFRQVSAQ---SL--VLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 491 (729)
..++++|+.-|.+.++....-.. ..+..++....+.+++++..+.+.++... .+ .-+....+.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34666666666666544222222 23344455566666666666666665421 00 113334455555554444
Q ss_pred CHHHHHHHHH
Q 004813 492 KITEAVEVFC 501 (729)
Q Consensus 492 ~~~~A~~~~~ 501 (729)
+.+--.++++
T Consensus 120 ~m~LLQ~FYe 129 (440)
T KOG1464|consen 120 NMDLLQEFYE 129 (440)
T ss_pred hhHHHHHHHH
Confidence 4444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=23 Score=34.07 Aligned_cols=235 Identities=12% Similarity=0.053 Sum_probs=138.8
Q ss_pred CCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHCCCCCCHHH
Q 004813 439 VPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI----TEAVEVFCCMSKNGCSLSSSS 514 (729)
Q Consensus 439 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 514 (729)
.+|.......+.++...|..+. ...+..+... +|...-...+.+++..|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~-~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDV-FRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchH-HHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455555555666666664332 2233333332 3555555666666666653 4567777766433 456666
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 515 FNILIYGLCVMRKV-----DKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 515 ~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
-...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ .++...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 65666666554321 223333333332 3455555566677777775 5666776666653 3444444455
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 590 QSMSEQN-KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 590 ~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
.++...+ +...+...+..+.. .++..+-...+.++++.|+ ..|...+-+..+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 24466666666664 4577777788888888887 45666666666542 2 234678888888885
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
+|...++.+.+. .||...-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888864 467777776666664
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.64 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A 601 (729)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.40 E-value=43 Score=36.65 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHh--
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLG-IQLELSFYTCIIPMLCR-- 284 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 284 (729)
....+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667999999998876 2233456666655554433222111111 2222111 01122557778888876
Q ss_pred -cCCHHHHHHHHHHHHhC
Q 004813 285 -ENKLEEAIRLFKMMRAL 301 (729)
Q Consensus 285 -~g~~~~A~~~~~~m~~~ 301 (729)
..+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 46788888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.18 E-value=22 Score=32.95 Aligned_cols=263 Identities=9% Similarity=-0.022 Sum_probs=141.9
Q ss_pred cCChhHHHHHHHHHHhCCCC----CcccchHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHhHHHHHHHHhhcC
Q 004813 386 AGKFFLAKCILEKMADRKIA----DCDSWNIPIRWLCENEEIRKAYELLGRMVVS---SV--VPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~ll~~~~~~~ 456 (729)
..+.++|+.-|++..+.... .-.....++....+.+++++.++.+.+|+.- .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566777777766654332 2233455677777888888888888777421 11 224456677776666555
Q ss_pred CHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQ-----SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCS-----------LSSSSFNILIY 520 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~ 520 (729)
+.+...++++.-.+. +-+.-..+-.-|...|...+.+.+-.++++++...-.. .=..+|..=|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555444432211 11111223355677788888888888888888653111 11346666778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHH-----HhcCChhHHHHHHHHHHH----cCCCCCHHH---HHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSG-TSYTTSTYTKIMLGL-----VKLQRAKDLLVVLAQMLV----EGCALDVEA---YCI 587 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~----~~~~p~~~~---~~~ 587 (729)
.|....+-..-..+|++..... --|.+.... .++-| .+.|++++|-.-|-+.-+ .| .|...+ |..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 8888888777788888765432 124443333 33333 466788887654433332 23 233322 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKA--GLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNI 657 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 657 (729)
|...+.+.|- .-|+.-... .-.|.......++.+|. .+++.+..++++.-... +..|+..-+.
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~-IM~DpFIReh 342 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSN-IMDDPFIREH 342 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhcc-ccccHHHHHH
Confidence 4444444331 001111111 12345556677888875 44566666666554443 5555544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.90 E-value=4 Score=30.91 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.+-++.+....+.|++.+..+-+++|.+.+++..|.++|+....+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.4 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
+|..+..+|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.2 Score=42.58 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444555555555555544333344455555555555554444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.21 E-value=47 Score=35.81 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDV--EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
++..-|+.++|..+.++|.... .|-. .-.-.+..+|+-.|+-....+++--.+.. ..-|..-...+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445556666666666666542 1111 11113344555566655555444443331 222333333333345555666
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL-TSQASYLLDLMLG 680 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 680 (729)
+....+.+-+.+. ..|.+..=..++-+.+-+|- ..+|..+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 6666666666655 34444333333322222222 2456666666653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.4 Score=27.36 Aligned_cols=29 Identities=31% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 652 SSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..+++.|+..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.94 E-value=3.3 Score=31.72 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.81 E-value=2.6 Score=40.03 Aligned_cols=51 Identities=6% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
|.++|.+++|+..|...+. +.| |.+++..-..+|.+..++..|..-....+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455555555555554443 233 44444444445555555444444443333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.9 Score=36.38 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD--SEVLDSSMYNILING 661 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 661 (729)
|.+..++.+.+.+.+.+|+...++-++.+ +.|...-..++..|+-.|++++|..-++..-+. ...+-...|.+++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555677888889999999988877753 235566778889999999999999888877765 233345567777654
Q ss_pred H
Q 004813 662 L 662 (729)
Q Consensus 662 ~ 662 (729)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.65 E-value=57 Score=36.16 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=106.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCcccH-------HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCCCHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNMNSGGFKLSV-------DVFNVVLGAIVEEKRGFADFVFVYKEMVKA----GIVPNVDTLNY 207 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~ 207 (729)
-......++.+|..++.++...-..|+. ..++.+-.......|+++.+..+-+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3344567889999888888544223222 234554444444448888888877776643 22334556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHH--HHHHhcCCh--hHHHHHHHHHHHC-----C-CCCCHHh
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTF---EIVI--KGLIANSRV--DDSVSILGEMFDL-----G-IQLELSF 274 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~g~~--~~a~~~~~~~~~~-----~-~~~~~~~ 274 (729)
+..+..-.|++++|..+..+..+..-.-++..+ ..+. ..+...|+. .+.+..+...... . ..+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777888889999998887766553212233322 2222 234456632 2333333333221 0 0122344
Q ss_pred HHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 275 YTCIIPMLCRENKLEEAIRL----FKMMRALDLMPDELT--YEELINCLCENLRLDDANDILEDMIVIGL 338 (729)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 338 (729)
+..++.++.+ ++.+..- +.--......|-... +..|+......|+.++|...++++.....
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 5555666655 3332222 222112111121111 23566777888999999998888876433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.1 Score=26.37 Aligned_cols=27 Identities=19% Similarity=-0.017 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 654 MYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777788888888888877765
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.46 E-value=22 Score=31.32 Aligned_cols=113 Identities=10% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHhccCChHHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCI--LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETML-----SLLHGLADGSQLHLVS 637 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~ 637 (729)
+.....+++......-....+.. +...+...|++++|..-++..... |....+. .|.+.....|..++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444455554422212222222 345677888999999888877753 2222332 3445667788999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
..++...+.+. .......-.+++...|+.++|..-|++.++.+
T Consensus 147 ~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 147 KTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99887776532 23345567788899999999999999988764
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.91 E-value=1.6 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
.|+.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.67 E-value=8.8 Score=33.28 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=35.6
Q ss_pred CCCCH-HHHHHHHHHHhccC----C-------hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 613 LVPDR-ETMLSLLHGLADGS----Q-------LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 613 ~~p~~-~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+.|+. ..+..+..+|...+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 55663 45556666554322 2 4555566666665 3678788877666654 37777777777
Q ss_pred CCCC
Q 004813 681 KGWV 684 (729)
Q Consensus 681 ~g~~ 684 (729)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.64 E-value=59 Score=35.39 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 280 PMLCRENKLEEAIRLFKMMRALDLMP---DELTYEELINCLCENLRLDDANDILEDMI 334 (729)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 334 (729)
+.+.+.+.+++|++.-+..... .| -...+...|..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3444455555555544433221 11 12334455555555555555555555553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.60 E-value=33 Score=32.41 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHH
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATT 689 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 689 (729)
+......|..+|.+.+|.++.++.... .+.+...|-.++..|...||--.|.+-++++.+ .|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 344566788899999999999999987 477888888999999999997777777776653 355555443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.93 E-value=34 Score=32.10 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCC-----CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004813 64 DHLIRVLDNTNDLSSALKIFKWVSIQKR-----FQHT-------ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVR 131 (729)
Q Consensus 64 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~-----~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 131 (729)
+...+.+.-+.|+..|++.-++..+.-. -.++ ......-|++++..++|.++....-...+..-....
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 3455666677788888887776543210 0000 011222345556666666655544433322112222
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
.....=|-.|.+.+....+.++-....+
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3333333344555555555555544443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.92 E-value=2.3 Score=24.82 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..+...+...|++++|++.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.77 E-value=13 Score=33.08 Aligned_cols=73 Identities=10% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD---SEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
++|.+.|-.+...+.--++.....|..-|. ..+.++++.++.+..+. +..+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554444444444444443 55666777777666655 23556677777777777777777664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=30 Score=31.11 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHH
Q 004813 387 GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 466 (729)
|-+..|.--|.+.....+.-+..||.+.--+...|+++.|.+.|+...+.++.-+-...|.-+ ++.--|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 333333333444444444344556666666666666666666666666554333322333222 2233455666655554
Q ss_pred HHHhC
Q 004813 467 QVSAQ 471 (729)
Q Consensus 467 ~~~~~ 471 (729)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 44443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=37 Score=34.37 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 542 (729)
..|+++.+...+...... +.....+...++......|+++.|...-..|....
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 345555555555444332 22334444555555555555555555555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.63 E-value=6.6 Score=29.81 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
+.=++.+-++.+...+..|++.+..+.+++|.+.+|+.-|+++++-.+.+ ...+...|..++.-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 44567788888888889999999999999999999999999999988854 222445666666544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.59 E-value=13 Score=38.74 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004813 214 ETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIR 293 (729)
Q Consensus 214 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (729)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4556666655544332 444566666666666666666666655544 4445555555555554444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 294 LFKMMRALDLMPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 294 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+-....+.|. +..+| .+|...|+++++.+++.
T Consensus 714 la~~~~~~g~--~N~AF----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGK--NNLAF----LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhcc--cchHH----HHHHHcCCHHHHHHHHH
Confidence 4444444442 22222 23445566666655543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.51 E-value=23 Score=36.94 Aligned_cols=150 Identities=13% Similarity=-0.026 Sum_probs=86.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
..|+++.|..++..+. ...-+.+++.+.++|-.++|+++ .+|+.-- .....+.|+.+.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 3466666665444432 22334455566667777777654 3333221 122345677777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 004813 569 VLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE 648 (729)
Q Consensus 569 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 648 (729)
+..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655542 556677777777777787777777766553 33445555556666555555555555432
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 649 VLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 649 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.|....+|...|+++++.+++.+-
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233444566777777777766554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.29 E-value=42 Score=31.76 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRETM 620 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~ 620 (729)
++.....|..+|.+.+|.++-+..+..++ .+...|-.++..++..|+--.|.+-++++.+ .|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667777777777777777776543 3666677777777777776666665555543 2555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.27 E-value=59 Score=33.48 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 270 LELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIV 349 (729)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 349 (729)
.|.....+++..+..+.+..-..-+..+|..-| -+...|..++.+|..+ ..++-..+++++.+..+ |......-+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHH
Confidence 455556677777777777777777777777765 4667777788887777 45666777777776542 333332222
Q ss_pred HHHHccCChHHHHHHHH
Q 004813 350 RGLCEVGKFDESVNFLE 366 (729)
Q Consensus 350 ~~~~~~~~~~~a~~~l~ 366 (729)
..+...++.+.+...|.
T Consensus 139 a~~yEkik~sk~a~~f~ 155 (711)
T COG1747 139 ADKYEKIKKSKAAEFFG 155 (711)
T ss_pred HHHHHHhchhhHHHHHH
Confidence 22222244444444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.21 E-value=1.5 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+..++.++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777777777777777777653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.73 E-value=81 Score=34.66 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=13.3
Q ss_pred HHHhccCChHHHHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~ 645 (729)
..+...|+.++|.....+...
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 345567777777776665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.54 E-value=7.7 Score=29.83 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
-+..+-++.+...+..|++.+..+.+++|.+.+++.-|+++|+-++.+ ..+....|..++.-+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 367777888888889999999999999999999999999999999865 223333677776654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.33 E-value=10 Score=33.39 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=48.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLAD 629 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 629 (729)
+-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|++-..+.++. .|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 345666777777777776666421111 223434444556666666666666666653 232 1111222335556
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
...+++|+.=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.03 E-value=29 Score=29.12 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=23.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004813 109 AGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNS 159 (729)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 159 (729)
..++++++.+++.+.-.. |.....-..-...+...|++.+|.++|+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555555555554443 22222222223334455555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.93 E-value=23 Score=31.33 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=10.9
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 004813 487 LCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~ 506 (729)
+.++|++++|..-|..++..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES 124 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 44555555555555555543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.72 E-value=2.2 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.43 E-value=31 Score=28.99 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 455 LCNYEDALRVFRQVSAQSLV-LDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.++.+++..+++.+.-..+. +...++. .-.+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443221 1112222 22234456666666666665553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.35 E-value=1.6e+02 Score=37.08 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=88.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 278 IIPMLCRENKLEEAIRLFKMM----RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+..+-.+++.+.+|.-.++.- .+.. -...-|-.+...|..-+++|....+...-.. .|+ .
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l--------- 1452 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L--------- 1452 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H---------
Confidence 444555677777777777763 2111 1122233333367777777766665543111 111 1
Q ss_pred ccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH
Q 004813 354 EVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM 433 (729)
Q Consensus 354 ~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 433 (729)
..-+......|++..|...|+++...++.....++-++......|.++...-..+..
T Consensus 1453 -----------------------~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1453 -----------------------YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred -----------------------HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 233444567789999999999999888877778888888888888888777766655
Q ss_pred HHCCCCCCHHhHH-HHHHHHhhcCCHHHHHHHHH
Q 004813 434 VVSSVVPDCATYS-AFVLGKCKLCNYEDALRVFR 466 (729)
Q Consensus 434 ~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~ 466 (729)
..+- .+....++ .-+.+-.+.++++.......
T Consensus 1510 ~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1510 IINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 4432 22223332 22334466777777766655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.31 E-value=43 Score=30.56 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHHc--CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHH-HHhc--
Q 004813 561 QRAKDLLVVLAQMLVE--GCALDVEAYCILI---QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS---LLH-GLAD-- 629 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~-~~~~-- 629 (729)
.++++|+..|+..-+. |-..+...--+++ ..-+..+++.+|+.+|++.....+.-+..-|.. ++. ++|+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 3455555555555442 2221222222222 333567888999999998887654433333321 121 1222
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
..+.-.+...+++..+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 35555666677777665
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.27 E-value=84 Score=35.44 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 004813 63 PDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKER---YPNVREALISLVF 139 (729)
Q Consensus 63 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 139 (729)
+..+...++..++.-....+=.++.+.+ -|..++..|...|+.++|+++|.+..+.. -......+..++.
T Consensus 478 ~~~v~~llrlen~~c~vee~e~~L~k~~-------~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~ 550 (877)
T KOG2063|consen 478 PGLVGPLLRLENNHCDVEEIETVLKKSK-------KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIE 550 (877)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHhcc-------cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHH
Confidence 4445555554443333333333332221 35566677777777777777777765521 1112233333444
Q ss_pred HHHhcCCh--hhHHHHHHHHHhCCCcccH-------------HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH
Q 004813 140 SFVNHYRV--NGAMRVLVNMNSGGFKLSV-------------DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDT 204 (729)
Q Consensus 140 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~-------------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 204 (729)
-+-..+.- +-..++-.........-.. ..-..++. +... ...+.+...++.+....-.++..-
T Consensus 551 YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~-~l~~-~~~~l~I~YLE~li~~~~~~~~~l 628 (877)
T KOG2063|consen 551 YLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLN-YLKS-KEPKLLIPYLEHLISDNRLTSTLL 628 (877)
T ss_pred HHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHH-Hhhh-hCcchhHHHHHHHhHhccccchHH
Confidence 44444433 4444444444322111100 11122333 3344 677888888888887665667777
Q ss_pred HHHHHHHHHh
Q 004813 205 LNYLLEVLFE 214 (729)
Q Consensus 205 ~~~li~~~~~ 214 (729)
.+.++..|+.
T Consensus 629 ht~ll~ly~e 638 (877)
T KOG2063|consen 629 HTVLLKLYLE 638 (877)
T ss_pred HHHHHHHHHH
Confidence 7788877765
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.56 E-value=63 Score=31.96 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 509 SLSSSSFNILIYGLCVMRK------------VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+-|..+|-.++..--..-. .+.-+.+++++++.+ +.+......++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578888888764432211 345566788887774 356667777888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC------CC------CCC--HH---HHHHHHHHHhccCChHHH
Q 004813 577 GCALDVEAYCILIQSMSE---QNKLKDCALFFNVMVKA------GL------VPD--RE---TMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~------~~------~p~--~~---~~~~l~~~~~~~g~~~~A 636 (729)
.+. +...|...++.... .-.++....+|.+.++. +. .++ .. ++..+...+..+|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 444 67777777766543 23577777777776653 21 000 01 112222233456777777
Q ss_pred HHHHHHHHhCC
Q 004813 637 SSGINKLVSDS 647 (729)
Q Consensus 637 ~~~~~~~~~~~ 647 (729)
..+++-+.+.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 77777777663
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.55 E-value=4.3 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHK 230 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 230 (729)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.23 E-value=55 Score=31.13 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 492 KITEAVEVFCCMSK-NGCSLSSSSFNILIYGLCV-MR-KVDKAIRLRSLAYSS-GTSYTTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 492 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
.+.+|+++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 44555555552211 1123345555555554443 11 122222222222221 12445555555566666666666666
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 568 VVLAQMLVE-GCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 568 ~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
+.|+..... ++.-|...|..+|+.....|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666655444 444455566666666666666554444433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.20 E-value=6.4 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
...+.-++.+.|++++|.+..+.+++ ++|++.-...|-...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 44567788888888888888888887 578887666665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 3e-12
Identities = 68/517 (13%), Positives = 159/517 (30%), Gaps = 176/517 (34%)
Query: 15 IKWVNLTSCISSLSCANTIPLSSETDMIKSHQTTDYEAKIQSLRHNLSP------DHLIR 68
I W+NL +C +S +++ +Q L + + P DH
Sbjct: 184 IFWLNLKNC------------NSPETVLE---------MLQKLLYQIDPNWTSRSDHSSN 222
Query: 69 VLDNTNDLSSALK-IFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGL------CQN 121
+ + + + L+ + K K +++ C ++L NV+ + C+
Sbjct: 223 IKLRIHSIQAELRRLLK----SKPYEN-----CLLVLL-----NVQNAKAWNAFNLSCKI 268
Query: 122 MVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGF--KLSVDVFNVVLGAIV-- 177
++ R+ V + L + + + ++ +S + L
Sbjct: 269 LLTTRFKQVTDFLSAATTT-----------HISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 178 --EEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE--TNRIESALDQ-----FRRM 228
E ++ I + T + V + T IES+L+ +R+M
Sbjct: 318 LPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 229 HKKGCC----PNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284
+ P++ I++ + + D + ++ ++ L
Sbjct: 375 FDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--------------LVE 418
Query: 285 ENKLEEAIRLFKMMRALDLMPDELTY--EELINCLCENLRLDDANDILEDMIVIGLTPTD 342
+ E I + + L + + +++ + D++D++ D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPP-------YLD 470
Query: 343 DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMA-- 400
F + + + G+ H L+ + + L + +
Sbjct: 471 QYF------------Y----SHI----GH----H---LKNIEHPERMTLFRMVFLDFRFL 503
Query: 401 DRKI-ADCDSWNIPI-------------RWLCENEEIRKAYELLGRMVVS--SVVPDCAT 444
++KI D +WN ++C+N+ YE R+V + +P
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---KYE---RLVNAILDFLPKIEE 557
Query: 445 YSAFVLGKCKLCN-------------YEDALRVFRQV 468
L K + +E+A +QV
Sbjct: 558 ----NLICSKYTDLLRIALMAEDEAIFEEA---HKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 81/623 (13%), Positives = 173/623 (27%), Gaps = 164/623 (26%)
Query: 178 EEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLF--ETNRI---ESALDQFRRMHKKG 232
E + + D + V+++ D + +L E + I + A+ R+
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 233 CCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAI 292
+ ++ ++ + L I+ E P + +E+
Sbjct: 72 LSKQEEMVQKFVEEVL-----RINYKFLMS----PIKTE-----QRQPSMMTRMYIEQRD 117
Query: 293 RLFKMMRALDLMPDELT----YEELINCLCENLRLDDANDI-LEDMIVIG---LTPTDDV 344
RL+ + ++ Y +L L E L A ++ ++ ++ G +
Sbjct: 118 RLYNDNQVFA--KYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVA----- 167
Query: 345 FVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKI 404
+D+ K D + +L SP +LE + +D
Sbjct: 168 -LDVCLSYKVQCKMDFKIFWL--NLKNCNSP-ETVLEMLQKL--LYQIDPNWTSRSDH-- 219
Query: 405 ADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRV 464
S NI +R E+R+ LL YE+ L
Sbjct: 220 ----SSNIKLRIHSIQAELRR---LLKSK-----------------------PYENCL-- 247
Query: 465 FRQVSAQSLVLDSISYSKLVEGL---CQVEKIT--------------------------- 494
LVL ++ +K C++ T
Sbjct: 248 --------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 495 --EAVEVFCCMSKN-GCSLSS-----SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYT 546
E + K C + N + D + +
Sbjct: 300 PDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-----VN 351
Query: 547 TSTYTKIM-LGLVKLQRA--KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCAL 603
T I+ L L+ A + + L+ + + ++ + + D +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKS----DVMV 406
Query: 604 FFNVMVKAGLVP-DRETMLSLLHGL--------ADGSQLH--LVSSGINKLVSDSE---- 648
N + K LV + + + + LH +V DS+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 649 -VLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDS--- 704
LD Y+ + + L + + + L ++ H ++ G +++
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 705 ----RRFAFDSSSFPDS-VSDIL 722
+ + D+ + V+ IL
Sbjct: 527 LKFYKPYICDNDPKYERLVNAIL 549
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 53/320 (16%), Positives = 104/320 (32%), Gaps = 86/320 (26%)
Query: 448 FVLGKCKLCNYEDALRVFRQVSAQSL----VLD---SISYSKLVEGLCQV-EKITEAVEV 499
F G+ + Y+D L VF + V D SI + ++ + + ++ + +
Sbjct: 9 FETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 500 FCCMSKNGCSLSSSSFNILI---YGLCVMRKVDKAIRLRSLAYSSGTSYTTSTY------ 550
F + + ++ Y +M + R S+ Y
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 551 -----------TKIMLGLVKLQRAKDLLVVLAQMLVEGC-----ALDVEAYCILIQSMSE 594
K+ L++L+ AK+ V++ +L G ALDV C
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVL--GSGKTWVALDV---C-------- 171
Query: 595 QNKLKDCALFFNVM-VKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSS 653
+ C + F + + ET+L +L L + ++ +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------------LYQIDPNWTSRSDH 219
Query: 654 MYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSV--GEEIDSRRFAFDS 711
NI + + S + L L+ K + + LLV +V + + AF+
Sbjct: 220 SSNIKLR------IHSIQAELRRLLKSKPYE-----NCLLVLLNVQNAKAWN----AFNL 264
Query: 712 S------SFPDSVSDILAEG 725
S + V+D L+
Sbjct: 265 SCKILLTTRFKQVTDFLSAA 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 2e-11
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 4/154 (2%)
Query: 193 MVKAGIVPNVDTLNYLLEVLFETNRIESA---LDQFRRMHKKGCCPNSRTFEIVIKGLIA 249
+A + L + T+++ A L +K + V+ G
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 250 NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAI-RLFKMMRALDLMPDEL 308
+ V +L + D G+ +L Y + + R+++ I R + M L L
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTD 342
L++ L + + + P
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 5e-10
Identities = 14/130 (10%), Positives = 46/130 (35%), Gaps = 1/130 (0%)
Query: 187 VFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKG 246
+ V+ + + +D N ++ + + + G P+ ++ ++
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 247 LIANSRVDDSVS-ILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMP 305
+ + ++ L +M G++L+ F ++ R L+ ++ +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 306 DELTYEELIN 315
+ +L+
Sbjct: 270 PPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 6e-09
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 1/166 (0%)
Query: 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEA 584
+ S A SG + K L +L A LLVV + L ++
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA-DGSQLHLVSSGINKL 643
Y ++ + Q K+ ++ AGL PD + + L + + + ++
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 644 VSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689
+ L + +L++ + + + +P
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 3e-08
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 5/163 (3%)
Query: 377 NALLECCCNAGKFFLAKCILEKMAD----RKIADCDSWNIPIRWLCENEEIRKAYELLGR 432
A +CC + LA +L RK+ D +N + ++ +L
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 433 MVVSSVVPDCATYSAFVLGKCKLCNYEDAL-RVFRQVSAQSLVLDSISYSKLVEGLCQVE 491
+ + + PD +Y+A + + + R Q+S + L L ++ + L+ +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534
+ +V S + + L+ + +L
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Query: 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINK 642
E L+Q + L +A L ++ +L+ QL L +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 643 L---VSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694
++L MYN ++ G ++G + Y+L ++ G PD ++ +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 4/171 (2%)
Query: 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCC---MSKNGCSLSSSSF 515
+ Q S L + +++ A + + L+ +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL-QRAKDLLVVLAQML 574
N ++ G + + + + +G + +Y + + + Q A + L QM
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 575 VEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625
EG L +L+ LK +P LL
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.69 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.19 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.79 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.44 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.03 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.91 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.39 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.36 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.17 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.74 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.65 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.39 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.44 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.32 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.69 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.18 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.52 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.46 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.67 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.26 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.95 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 82.91 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=359.13 Aligned_cols=522 Identities=11% Similarity=-0.028 Sum_probs=385.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhH
Q 004813 106 LGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFAD 185 (729)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 185 (729)
..+.|.+..+...+..+ ..++...|+.++..|.+.|++++|..+|+++.. ..|+..++..+..++.+. |++++
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~-g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT-GDYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT-TCHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc-CcHHH
Confidence 34455555555554433 235677788888888888888888888888874 356777788888888888 88888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 186 FVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 186 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
|..+|+++... +++..+++.++.+|.+.|++++|.++|+++. |+.. ...++.+.++. .
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~-----------~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ-----------D 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC-----------C
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc-----------c
Confidence 88888877543 5677888888888888888888888887522 1110 01111111111 2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH--HH-HHHHHHcCCCCCH
Q 004813 266 LGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDAN--DI-LEDMIVIGLTPTD 342 (729)
Q Consensus 266 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~ 342 (729)
.+...+..+|+.++.+|.+.|++++|+++|++|.+.+. .+...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 34456778888888889999999999999988887542 24445555554444333222211 11 3334333322233
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 004813 343 DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEE 422 (729)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (729)
.++ +.++..|.+.|++++|.++|+++.+. ..+..+|+.++.+|.+.|+
T Consensus 273 ~~~-------------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 273 SLY-------------------------------MLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHH-------------------------------HTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTC
T ss_pred HHH-------------------------------HHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcC
Confidence 333 56677777888888888888887765 2378888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCC 502 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 502 (729)
+++|.++|+++...++. +..++..++.++.+.|++++|..+++.+.+... .+..++..++..|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998877533 677888888999999999999999999886543 3788888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 004813 503 MSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV 582 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 582 (729)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +.
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 88753 4467789999999999999999999999998775 457788999999999999999999999999887544 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD--RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 554 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 89999999999999999999999999876 66787 7899999999999999999999999998873 66889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDAT-THGLLVGSS 697 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~ 697 (729)
.++.+|.+.|++++|.++++++.+. .|+.. .+..+..++
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999984 56554 444444433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.40 Aligned_cols=521 Identities=10% Similarity=-0.001 Sum_probs=342.7
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAM 151 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 151 (729)
..+.+..+...|... ..++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 65 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 65 TDGSFLKERNAQNTD-----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCccCCCCCccccc-----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 445555555555443 2357888999999999999999999999999865 457788999999999999999999
Q ss_pred HHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 152 RVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
.+|+++.. .+++..+++.++.++.+. |++++|..+|+++... +.. ...+.+.++ ...
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKL-YDWQGALNLLGETNPF----RKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHT-TCHHHHHHHHCSSCTT----C---------------C-----------CCS
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHH-hhHHHHHHHHhccCCc----ccc-----ccccccccc-----------ccc
Confidence 99999865 368889999999999999 9999999999953321 100 000000000 011
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCHh
Q 004813 232 GCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAI--RL-FKMMRALDLMPDEL 308 (729)
Q Consensus 232 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~~ 308 (729)
+..++..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+...+...++.+.+. .+ +..+...+..+...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 2333444555555555555555555555555544321 12233333333222222111111 11 23333322223334
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCC
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGK 388 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~ 388 (729)
+|+.++..|.+.|++++|.++|+++.+. +++..++ ..++..|.+.|+
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-------------------------------~~l~~~~~~~g~ 320 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL-------------------------------LCKADTLFVRSR 320 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH-------------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH-------------------------------HHHHHHHHHhcC
Confidence 4555555666666666666666666543 3455555 556666666666
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 004813 389 FFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQV 468 (729)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 468 (729)
+++|.++|+++...++.+..+|+.++.++.+.|++++|.++++++.... +.+..++..++..|.+.|++++|.++|+++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6666666666665555566667777777777777777777777776543 335667777777777777788887777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004813 469 SAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS 548 (729)
Q Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 548 (729)
.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 400 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 400 STMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 765333 56777788888888888888888888877653 4467778888888888888888888888887764 44677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 555 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 7888888888888888888888887765 55666 6788888888888888888888888887753 336778888
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
+..+|.+.|++++|.+.++++.+. .+.+...|..+..+|
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAI-SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 888888888888888888888876 355666776666655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-26 Score=235.19 Aligned_cols=378 Identities=11% Similarity=-0.021 Sum_probs=202.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 004813 247 LIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDA 326 (729)
Q Consensus 247 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 326 (729)
+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++...+... .+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHH
Confidence 3344455555554444443221 2233334444444455555555555544444321 3344455555555555555555
Q ss_pred HHHHHHHHHcCCCCCH-HhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 327 NDILEDMIVIGLTPTD-DVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 327 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
...|+++.+. .|+. ..+ ..+...+.+.|++++|.+.|+++...++.
T Consensus 87 ~~~~~~al~~--~p~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGY-------------------------------INLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHH-------------------------------HHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHc--CcchHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555442 1222 223 44444455555555555555555444443
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...+..+...+...|++++|.+.|+++....+ .+..+|..+...+...|++++|...|+++.+.++. +...+..+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 211 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 444445555555555555555555555554421 13455555556666666666666666666554332 4555666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKD 565 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 565 (729)
.+...|++++|...++++.... +.+..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666665542 2245556666666666666666666666666543 2334556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|.+.|+++.+..+ .+..+|..+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.++++.+
T Consensus 290 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665532 25556666666666666666666666666553 122345556666666666666666666666665
Q ss_pred CCCCCCHHhHHHHHHHHHhcC
Q 004813 646 DSEVLDSSMYNILINGLWKEG 666 (729)
Q Consensus 646 ~~~~~~~~~~~~l~~~~~~~g 666 (729)
. .|.+...|..+...+...|
T Consensus 368 ~-~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 I-SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp T-CTTCHHHHHHHHHHHHHTC
T ss_pred h-CCCCHHHHHhHHHHHHHcc
Confidence 4 2344555555555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=259.89 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=159.4
Q ss_pred HHHHHHHHHhCCCcccH-HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 004813 150 AMRVLVNMNSGGFKLSV-DVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNR---------IE 219 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---------~~ 219 (729)
+..+.+++.+.+....+ ..++.+|.+|++. |++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544433 3467778888888 8888888888888888888888888888888776544 67
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 220 SALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMR 299 (729)
Q Consensus 220 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (729)
.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999988888999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 300 ALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLC 353 (729)
Q Consensus 300 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 353 (729)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 889889999999999999999999999999999998888999999866555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=259.38 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCHHHH
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR---------AKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .++|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhh
Q 004813 666 GLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVG 699 (729)
Q Consensus 666 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 699 (729)
|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-26 Score=234.19 Aligned_cols=378 Identities=12% Similarity=-0.017 Sum_probs=322.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGK 357 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 357 (729)
+...+.+.|++++|.+.+.++.+..+ .+...+..+...+...|++++|...++...+.. +.+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~------------ 70 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAY------------ 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH------------
Confidence 34567788999999999988877542 345667777778889999999999998887753 3455666
Q ss_pred hHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 358 FDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 358 ~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
..+...|.+.|++++|...|+++....+.+..+|..+..++.+.|++++|.+.|+++.+..
T Consensus 71 -------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 71 -------------------SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp -------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred -------------------HHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7888888999999999999999988877677889999999999999999999999998874
Q ss_pred CCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 438 VVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 438 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
+. +...+..+...+...|++++|...|+.+.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..
T Consensus 132 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 132 PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp TT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 32 4556777788889999999999999999987544 67889999999999999999999999999864 446778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+...+...|++++|...++++.+.. +.+..++..+..++...|++++|++.|+++.+.++. +..+|..+...+.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998875 346788999999999999999999999999987544 67889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+. .+.+..+|..++..|.+.|++++|.+.+++
T Consensus 287 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999986 3457889999999999999999999999999987 466788999999999999999999999999
Q ss_pred HHhCCCCCCH-HHHHHHHhhh
Q 004813 678 MLGKGWVPDA-TTHGLLVGSS 697 (729)
Q Consensus 678 ~~~~g~~p~~-~~~~~ll~~~ 697 (729)
+.+ ..|+. ..|..+-..+
T Consensus 365 a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 365 AIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHT--TCTTCHHHHHHHHHHH
T ss_pred HHh--hCCCCHHHHHhHHHHH
Confidence 997 45654 3444444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=225.19 Aligned_cols=456 Identities=9% Similarity=-0.047 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPML 282 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (729)
..+......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+.+.++ .+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 445556666667777777777777776643 5666777777777777777777777777766432 3455666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHH
Q 004813 283 CRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESV 362 (729)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 362 (729)
.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 159 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP--- 159 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC---
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc---
Confidence 777777777777777766543 3333444444444433333333333333322222222221110000000000000
Q ss_pred HHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh---cCCHHHHHHHHHHHHH----
Q 004813 363 NFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE---NEEIRKAYELLGRMVV---- 435 (729)
Q Consensus 363 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~---- 435 (729)
-...+..+............+ ..+.+...+......+.. .|++++|...|+++..
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 160 -------------SVTSMASFFGIFKPELTFANY-----DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp -------------CHHHHHHHHTTSCCCCCCSSC-----CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhHHHHHHHhhcCHHHHHHHh-----cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 000011111100000000000 000023333344444443 7888888888888876
Q ss_pred -CCCC--------CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004813 436 -SSVV--------PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN 506 (729)
Q Consensus 436 -~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 506 (729)
.... .+..++..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 3111 23456777788889999999999999999886544 778888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 004813 507 GCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC 586 (729)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 586 (729)
. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...|.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHH
Confidence 4 4567788889999999999999999999998875 345678888889999999999999999999887443 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhc---cCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGL-VPD----RETMLSLLHGLAD---GSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.+...+...|++++|...++++.+... .++ ...+..+..++.. .|++++|...++++.+. .+.+..+|..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHH
Confidence 899999999999999999999887421 112 3478888999999 99999999999999887 45678889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 659 INGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
+..|.+.|++++|.+.++++.+. .|+.....
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~ 486 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADL--ARTMEEKL 486 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--ccccHHHH
Confidence 99999999999999999999984 57665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-22 Score=216.60 Aligned_cols=439 Identities=8% Similarity=-0.064 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHH
Q 004813 97 DTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAI 176 (729)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 176 (729)
..+......+.+.|++++|...|+++.+.+ |+..++..++.+|.+.|++++|.+.|+++.+.+ +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 344555566666666666666666666654 356666666666666666666666666665543 33445566666666
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 004813 177 VEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 256 (729)
.+. |++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 84 ~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGL-GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHT-TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHH-hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 666 666666666666666542 233333344443333333333333332222222112211111111111111111111
Q ss_pred HHHHHHHHHCCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHhhHH
Q 004813 257 VSILGEMFDLGI---------QLELSFYTCIIPMLCR---ENKLEEAIRLFKMMRA-----LDLM--------PDELTYE 311 (729)
Q Consensus 257 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~~~~ 311 (729)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1123334444444443 7788888888877776 3111 1244566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhH
Q 004813 312 ELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFL 391 (729)
Q Consensus 312 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (729)
.+...+...|++++|...++++.+.. |+...+ ..+...+...|++++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~-------------------------------~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY-------------------------------IYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH-------------------------------HHHHHHHHTSSCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH-------------------------------HHHHHHHHHCCCHHH
Confidence 67777778888888888888877654 334444 556666777777777
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 004813 392 AKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQ 471 (729)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 471 (729)
|...++++....+.+...+..+...+...|++++|...+++....... +...+..+...+...|++++|...++.+.+.
T Consensus 289 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777666555666666666677777777777777766655322 4455555666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 004813 472 SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCV---MRKVDKAIRLRSLAYSSGT 543 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 543 (729)
... +...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+..
T Consensus 368 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 FPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp STT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred ccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 322 344555556666666666666666665544210 001 2245555555555 555555555555555443
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+.+..++..+...+.+.|++++|.+.|++..+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 233444455555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-22 Score=209.10 Aligned_cols=391 Identities=10% Similarity=-0.008 Sum_probs=257.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 256 SVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.+... .+..+|..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444322 24456677777777777888888888877776432 4566777777777777777777777777776
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---ccchH
Q 004813 336 IGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADC---DSWNI 412 (729)
Q Consensus 336 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 412 (729)
.+ +.+...+ ..+...|.+.|++++|...|+++....+.+. ..+..
T Consensus 89 ~~-p~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 89 LK-MDFTAAR-------------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp HC-TTCHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cC-CCcHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 53 1123333 6677777777777777777777777655433 44444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 004813 413 PIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK 492 (729)
Q Consensus 413 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 492 (729)
++..+.. ..+..+...+...|++++|...|+.+.+.... +...+..+..+|.+.|+
T Consensus 137 l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 137 LIKSDEM-----------------------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHH-----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCC
Confidence 4333111 11222334466677777777777777765433 66677777777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHHHHhc
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKI------------MLGLVKL 560 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~ 560 (729)
+++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+...+..+ ...+.+.
T Consensus 193 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 193 PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888777776643 3456777777777777888888888887777653 2233344333 6778888
Q ss_pred CChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 561 QRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 561 ~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
|++++|...|+++.+..+. + ...|..+..++.+.|++++|.+.++++.+.. +.+...|..+..+|...|++++|
T Consensus 271 g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888876332 2 3467778888888888888888888887742 23577888888888888889999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHH------------HHHhcC-----ChhHHHHHHHH-HHhCCCCCCH-----------
Q 004813 637 SSGINKLVSDSEVLDSSMYNILIN------------GLWKEG-----LTSQASYLLDL-MLGKGWVPDA----------- 687 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~-~~~~g~~p~~----------- 687 (729)
...++++.+. .+.+...+..+.. .|...| +.+++.+.+++ .++ ..||.
T Consensus 349 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~ 425 (450)
T 2y4t_A 349 IQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAE 425 (450)
T ss_dssp HHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHH
Confidence 9888888886 3556667777663 344445 56777888886 333 33432
Q ss_pred HHHHHHHhhhhhcchhhhhhhccc
Q 004813 688 TTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 688 ~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
..+..+..++...++++....|++
T Consensus 426 ~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 426 KKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp HHHHHHHHHHHHSSGGGGC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHhccC
Confidence 367888899999999998888874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-21 Score=209.96 Aligned_cols=438 Identities=10% Similarity=0.028 Sum_probs=291.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIP 280 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 280 (729)
....|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++++.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34567778888888888888888888887753 33677788888888888888888888888887543 45677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHhHHHHHHHHHc
Q 004813 281 MLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVI------GLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~ 354 (729)
++...|++++|.+.|+.+.. . |+. ....+..+...+....|...++++... ...|+.... ..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHH
Confidence 88888888888888864322 1 221 122234455555667788888777543 122332222 22223
Q ss_pred cCChHHHHHHHHhhcCCCCC---CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHH
Q 004813 355 VGKFDESVNFLEDKCGYVTS---PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLG 431 (729)
Q Consensus 355 ~~~~~~a~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 431 (729)
..+.+.+...+......+.. ....+...+...+ .......|++++|..+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD--------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH--------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh--------------------------hhhHHHHHHHHHHHHHHH
Confidence 33333333222222221111 0111111110000 000111246777777787
Q ss_pred HHHHCCCCCC------HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004813 432 RMVVSSVVPD------CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSK 505 (729)
Q Consensus 432 ~~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 505 (729)
++.+..+... ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 7776532210 2245556667778888888888888888763 4477778888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 506 NGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 506 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+
T Consensus 305 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 381 (537)
T 3fp2_A 305 LN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVP 381 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHH
T ss_pred cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 53 4467788888888888888888888888888765 344567788888888888888898888888877543 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcc----------CChHHHHHHHHHHHhCCCCC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAG-----LVPDRETMLSLLHGLADG----------SQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 650 (729)
..+...+...|++++|.+.|+++.+.. .......+.....++... |++++|...++++.+. .+.
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~ 460 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPR 460 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCC
Confidence 888888888889999988888887641 111222344455666666 8889999999988886 456
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
+...|..++..|.+.|++++|.+.|+++.+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7778888899999999999999999988874
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-21 Score=206.72 Aligned_cols=444 Identities=8% Similarity=-0.024 Sum_probs=329.8
Q ss_pred cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004813 165 SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244 (729)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 244 (729)
....+..+...+.+. |++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+.. +.+...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 346677788888898 99999999999999875 4478899999999999999999999999998853 33678888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCC
Q 004813 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDL--MPDELTYEELINCLCENLR 322 (729)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~ 322 (729)
.++...|++++|...|+.+ ... |+. ....+..+...+....|...++.+..... .+........+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999999743 322 222 22234456666777899999999876421 1111122334555666677
Q ss_pred hhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 323 LDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADR 402 (729)
Q Consensus 323 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 402 (729)
.+.+...+.+... ..+....+...+..... ...-......|++++|..+++++.+.
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~----------------------~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYS----------------------ATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHT----------------------CSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHH----------------------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7666555444322 22332222222221111 11122233356778888888888877
Q ss_pred CCCCcc-------cchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC
Q 004813 403 KIADCD-------SWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL 475 (729)
Q Consensus 403 ~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 475 (729)
.+.+.. ++..+...+...|++++|...++++... .|+...+..+...+...|++++|...++.+.+....
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE- 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-
Confidence 665433 4666667788899999999999999886 455788888899999999999999999999887544
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 78889999999999999999999999998864 4457788999999999999999999999998875 455678888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGC-----ALDVEAYCILIQSMSEQ----------NKLKDCALFFNVMVKAGLVPDRETM 620 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~p~~~~~ 620 (729)
.+...|++++|.+.|+++.+..+ ......+......+... |++++|...|+++.+.. +.+...+
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 465 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAK 465 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 99999999999999999887521 11233344556677777 99999999999999853 2357888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 621 LSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+..+|...|++++|.+.++++.+.
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-21 Score=199.91 Aligned_cols=385 Identities=10% Similarity=-0.013 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 219 ESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 219 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..+...+.+..... +.+...+..+...+.+.|++++|..+|+.+.+... .+..++..+..+|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555432 34677888999999999999999999999987543 56888999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----hHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDD----VFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 299 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
.+.+. .+..++..+..+|...|++++|...|+++.+. .|+.. .+
T Consensus 87 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~----------------------------- 134 (450)
T 2y4t_A 87 IQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQ----------------------------- 134 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHH-----------------------------
T ss_pred HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHH-----------------------------
Confidence 88753 46788999999999999999999999999875 35543 23
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
..+...+... .+..+...+...|++++|...|+++.... +.+...+..+...+.+
T Consensus 135 --~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 135 --SQLIKSDEMQ----------------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIK 189 (450)
T ss_dssp --HHHHHHHHHH----------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4454432111 12223334455566666666666665543 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNIL------------IYGL 522 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~ 522 (729)
.|++++|...|+.+.+.... +..++..+...|...|++++|...|+++.... +.+...+..+ ...+
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554322 55666666666666666666666666666542 2233333333 6677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYT-----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|+..++++.+..+. +...|..+..+|...|+
T Consensus 268 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcC
Confidence 77788888888887777653 33 335667777778888888888888887766332 56777778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH------------HhccC-----ChHHHHHHHHH-HHhCCCCCC----H--
Q 004813 598 LKDCALFFNVMVKAGLVPD-RETMLSLLHG------------LADGS-----QLHLVSSGINK-LVSDSEVLD----S-- 652 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~----~-- 652 (729)
+++|.+.++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ ..+. .|| .
T Consensus 345 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~ 420 (450)
T 2y4t_A 345 YDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEE 420 (450)
T ss_dssp HHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHH
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchH
Confidence 88888888888763 444 4444444422 33333 56677887876 3333 222 1
Q ss_pred -----HhHHHHHHHHHhcCChhHH
Q 004813 653 -----SMYNILINGLWKEGLTSQA 671 (729)
Q Consensus 653 -----~~~~~l~~~~~~~g~~~~A 671 (729)
..+..+..+|...||.+++
T Consensus 421 ~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 421 KKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2555666666666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-16 Score=172.94 Aligned_cols=219 Identities=13% Similarity=0.158 Sum_probs=96.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004813 215 TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 215 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
.+++++|.++.++.. +..+|..+.+++...|++++|...|.+. .|...|..++..+.+.|++++|.+.
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455554444331 2344445555555555555555554332 2333444445555555555555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCC
Q 004813 295 FKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTS 374 (729)
Q Consensus 295 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 374 (729)
|....+.. ++....+.++.+|++.+++++...+. + .++...+..+...|...|++++|..+|... .
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----S 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----h
Confidence 54444332 22222223444444444444322221 1 133334444444555555555555554443 2
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh
Q 004813 375 PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK 454 (729)
Q Consensus 375 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 454 (729)
.|..+...|.+.|+++.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHH
Confidence 34445555555555555555554431 3344444444444444444444433321 1233334444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 004813 455 LCNYEDALRVFRQVS 469 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~ 469 (729)
.|.+++|+.+++...
T Consensus 1293 ~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1293 RGYFEELITMLEAAL 1307 (1630)
T ss_pred cCCHHHHHHHHHHHh
Confidence 455555554444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-18 Score=175.12 Aligned_cols=313 Identities=11% Similarity=-0.013 Sum_probs=253.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC 456 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 456 (729)
..+...+...|++++|...|+++....+.+...+..+...+...|++++|...++++....+ .+...+..+...+...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcC
Confidence 56677788889999999999988887777778888889999999999999999999887643 25677888888889999
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLV--LDSISYSKL------------VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 999999999998876430 144444444 578888999999999999998864 45778889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH------------HHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYC------------ILIQ 590 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~------------~l~~ 590 (729)
...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+. .+..
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 567788899999999999999999999999887443 444333 2366
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPD-R----ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE 665 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 665 (729)
.+...|++++|.+.++++.+.. |+ . ..+..+..++...|++++|...++++.+. .+.+...|..++..|...
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc
Confidence 7889999999999999999853 44 3 23455778899999999999999999987 466888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhhh
Q 004813 666 GLTSQASYLLDLMLGKGWVPDAT-THGLLVGSSV 698 (729)
Q Consensus 666 g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~ 698 (729)
|++++|.+.++++.+. .|+.. .+..+..+..
T Consensus 320 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 9999999999999974 57644 4444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-15 Score=167.70 Aligned_cols=437 Identities=11% Similarity=0.116 Sum_probs=274.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 004813 63 PDHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERY--PNVREALISLVFS 140 (729)
Q Consensus 63 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 140 (729)
...++++..+.+-+...-+.+- + +.++..|..++. ... +.=.++.+......+ ..++.-....+++
T Consensus 927 d~eli~vt~~n~l~k~~arylv---~----r~d~~lW~~vl~---~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKa 994 (1630)
T 1xi4_A 927 DLELINVCNENSLFKSLSRYLV---R----RKDPELWGSVLL---ESN--PYRRPLIDQVVQTALSETQDPEEVSVTVKA 994 (1630)
T ss_pred cHHHHHHHhcchhHHHHHHHHH---H----hcCHHHHHHHhc---CCc--HHHHHHHHHHHHhhcccccCHHHhHHHHHH
Confidence 4456666666666543322221 1 245666665552 111 111122222222211 2345556677778
Q ss_pred HHhcCChhhHHHHHHHHHhCCC--cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004813 141 FVNHYRVNGAMRVLVNMNSGGF--KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRI 218 (729)
Q Consensus 141 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 218 (729)
|...|.+.+|++++++....+- .-+...-+.++....+. +.....+...++... + ..-+...+...|.+
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY----D---APDIANIAISNELF 1065 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCH
Confidence 8888888888888888863321 12334455566666554 455566655555421 1 33366677778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 219 ESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 219 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 888888887521 2222233322 567788888877755 33566778888888888888888888553
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchH
Q 004813 299 RALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNA 378 (729)
Q Consensus 299 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 378 (729)
.|...|..++.++.+.|++++|.++|....+.. ++......++.+|++.+++++...++. ..+...+..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHHHHH
Confidence 456677778888888888888888887766643 333334457778888888776444432 222233556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 777788888888888888774 36788888888888888888888766 2567787777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM--RKVDKAIRLRS 536 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~ 536 (729)
..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.....|+-+...|++. ++..++.++|.
T Consensus 1267 ~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8777765542 2355666778888888888888888887776543 33445666666666543 34445555554
Q ss_pred HHHHcCCCC------CHHhHHHHHHHHHhcCChhHHH
Q 004813 537 LAYSSGTSY------TTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 537 ~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
.-.. +++ +...|..++..|.+.|+++.|.
T Consensus 1341 ~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1341 SRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred Hhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3222 122 4556777777888888888776
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-18 Score=170.34 Aligned_cols=330 Identities=9% Similarity=-0.016 Sum_probs=224.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHhHHHHHH
Q 004813 272 LSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP-TDDVFVDIVR 350 (729)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 350 (729)
+..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.. | +...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----- 74 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAAR----- 74 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHH-----
Confidence 44566667777777777777777777766542 345667777777777777777777777776642 3 23333
Q ss_pred HHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCC---CCcccchHHHHHHHhcCCHHHHH
Q 004813 351 GLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKI---ADCDSWNIPIRWLCENEEIRKAY 427 (729)
Q Consensus 351 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 427 (729)
..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 75 --------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 119 (359)
T 3ieg_A 75 --------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE--------- 119 (359)
T ss_dssp --------------------------HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------
T ss_pred --------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH---------
Confidence 5666677777777777777777766654 22222222211000
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004813 428 ELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNG 507 (729)
Q Consensus 428 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 507 (729)
...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+..
T Consensus 120 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 184 (359)
T 3ieg_A 120 --------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK 184 (359)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111222345667777778888777777765443 66677777777777888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH------------HHHHHHHhcCChhHHHHHHHHHHH
Q 004813 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT------------KIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+.+..++..+...+...|++++|...++++.+.. +.+...+. .+...+.+.|++++|...++++.+
T Consensus 185 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 185 -SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4466777777777778888888888887777654 22233222 235668888999999999999888
Q ss_pred cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 004813 576 EGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD 651 (729)
Q Consensus 576 ~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 651 (729)
..+. +. ..+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.++++.+. .+.+
T Consensus 263 ~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~ 339 (359)
T 3ieg_A 263 TEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NEND 339 (359)
T ss_dssp HCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTC
T ss_pred cCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Confidence 6433 33 234457788889999999999999998852 236778888899999999999999999999987 3555
Q ss_pred HHhHHHHHHHHHh
Q 004813 652 SSMYNILINGLWK 664 (729)
Q Consensus 652 ~~~~~~l~~~~~~ 664 (729)
...+..+..+...
T Consensus 340 ~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 340 QQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-16 Score=162.99 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 004813 201 NVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA----NSRVDDSVSILGEMFDLGIQLEL 272 (729)
Q Consensus 201 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 272 (729)
+...+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 44455555555555 566666666666665543 33
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 004813 273 SFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCE----NLRLDDANDILEDMIVI 336 (729)
Q Consensus 273 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 336 (729)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 444455555555 556666666666655543 34444555555544 45566666666655554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-18 Score=168.56 Aligned_cols=291 Identities=11% Similarity=-0.070 Sum_probs=193.8
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...+..+...+...|++++|.++++++....+. +...+..++..+...|++++|..+++.+.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 4555666666666667777777777766655322 3444555556666777777777777776665433 5556666777
Q ss_pred HHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 004813 486 GLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK 564 (729)
Q Consensus 486 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 564 (729)
.+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 777777 7777777777776653 3345667777777777777777777777777654 233455566777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCChHHH
Q 004813 565 DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG--------LVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+|.+.++++.+..+. +...+..+...+...|++++|...++++.+.. ...+...+..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777766433 56677777777777788888888777776531 122346777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHhhh-hhcchhh
Q 004813 637 SSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPD-ATTHGLLVGSS-VGEEIDS 704 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~-~~~~~~~ 704 (729)
...++++.+. .+.+...|..++..|...|++++|.+.++++.+. .|+ ...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 8888887776 3556677788888888888888888888877763 453 44455555555 3444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-15 Score=161.09 Aligned_cols=336 Identities=11% Similarity=-0.009 Sum_probs=161.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCC
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIA----NSR 252 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 252 (729)
++++.|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 55555555555555432 34445555555555 555555555555555543 34444445555554 455
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChh
Q 004813 253 VDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEELINCLCE----NLRLD 324 (729)
Q Consensus 253 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~ 324 (729)
+++|...|+...+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .++++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 666666666555543 34445555555554 556666666666666543 45555556556655 56666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHh----cCChhHHHHHHHHHH
Q 004813 325 DANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCN----AGKFFLAKCILEKMA 400 (729)
Q Consensus 325 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 400 (729)
+|...|++..+.| +...+ ..+...|.. .+++++|..+|++..
T Consensus 205 ~A~~~~~~a~~~~---~~~a~-------------------------------~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQ-------------------------------LHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHH-------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHH-------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6666666666543 23333 223333332 344444444444444
Q ss_pred hCCCCCcccchHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc-----CCHHHHHHHHHHHHhC
Q 004813 401 DRKIADCDSWNIPIRWLCE----NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL-----CNYEDALRVFRQVSAQ 471 (729)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~ 471 (729)
+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|+...+.
T Consensus 251 ~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 251 EQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 332 22233333333333 444555555555444332 223333333333333 4455555555554443
Q ss_pred CCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 004813 472 SLVLDSISYSKLVEGLCQVE---KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 544 (729)
+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 2 2233344444444333 4445555555554432 34444444444444 445555555555544432
Q ss_pred CCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 004813 545 YTTSTYTKIMLGLVK----LQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 576 (729)
+...+..|...|.. .+++++|...|++..+.
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 23344444444444 44444454444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=166.22 Aligned_cols=291 Identities=9% Similarity=-0.063 Sum_probs=246.0
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004813 373 TSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
+..+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++..... .+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 334477778888889999999999999988877788888888999999999999999999988653 3677888888899
Q ss_pred hhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 453 CKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKA 531 (729)
Q Consensus 453 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 531 (729)
...| ++++|...|+.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 9999 999999999999987544 67788899999999999999999999998864 34567777899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 532 IRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG--------CALDVEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ...+...|..+...+...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998875 4567888999999999999999999999998752 13346788899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChh
Q 004813 604 FFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL-WKEGLTS 669 (729)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 669 (729)
.++++.+.. +.+...+..+..+|...|++++|.+.++++.+. .+.+...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 999999853 235678889999999999999999999999987 466788888898888 4556544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-16 Score=167.14 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 93 QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
|.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++.... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 567788888887 477889999999999988775 7788889999999999999999999999987753 577777777
Q ss_pred HHHHHhcCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHh
Q 004813 173 LGAIVEEKRGFADFVF----VYKEMVKA-GIVP-NVDTLNYLLEVLFE---------TNRIESALDQFRRMHK 230 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~ 230 (729)
+.......|+++.|.+ +|++..+. |..| +...|...+....+ .|+++.|..+|++..+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 6544333277776655 66666542 4333 45677777766554 6788889999988887
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-16 Score=166.45 Aligned_cols=420 Identities=9% Similarity=0.000 Sum_probs=259.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004813 236 NSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELIN 315 (729)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 315 (729)
+...|..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++..... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 4455555555 345566666666666666532 2345556666666666666666666666666543 45555555443
Q ss_pred H-HHhcCChhHHHH----HHHHHHHc-CCCCC-HHhHHHHHHHHHc---------cCChHHHHHHHHhhcCCCCCCchHH
Q 004813 316 C-LCENLRLDDAND----ILEDMIVI-GLTPT-DDVFVDIVRGLCE---------VGKFDESVNFLEDKCGYVTSPHNAL 379 (729)
Q Consensus 316 ~-~~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~l~~~~~~~~~~~~~l 379 (729)
. ....|+.+.|.+ +|++.+.. |..|+ ...+...+....+ .|+++.|..+|+............+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 223455555444 55555432 43333 3444333333322 4556666666665544211111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------H
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRM------VVSS---VVPD--------C 442 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~p~--------~ 442 (729)
...|.. ++... +..+...++. ...+++..|..++..+ .+.. +.|+ .
T Consensus 168 ~~~~~~---~e~~~------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 168 WRDYNK---YEEGI------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHH---HHHHH------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHH---HHHhh------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111111 00000 0000000000 1234566676666652 2221 2333 1
Q ss_pred HhHHHHHHHHhh----cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHH
Q 004813 443 ATYSAFVLGKCK----LCNY----EDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-------VEKIT-------EAVEVF 500 (729)
Q Consensus 443 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~ 500 (729)
..|...+..... .++. +.+..+|+++....+. +...|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 344444332221 1222 4677888888876433 77888888887775 68887 899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 501 CCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYT--TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+...
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99986322446888999999999999999999999999985 343 35788888888899999999999999987633
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCC--CHHh
Q 004813 579 ALDVEAYCILIQS-MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVL--DSSM 654 (729)
Q Consensus 579 ~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~ 654 (729)
. +...|...... +...|++++|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....
T Consensus 388 ~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 388 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp C-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred C-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 2 33333322222 346899999999999998852 2257889999999999999999999999999872 122 2348
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
|...+......|+.+.+..+++++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999999998873
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=167.50 Aligned_cols=286 Identities=7% Similarity=-0.079 Sum_probs=193.1
Q ss_pred cCChhHHHH-HHHHHHhCCCC----CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHH
Q 004813 386 AGKFFLAKC-ILEKMADRKIA----DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYED 460 (729)
Q Consensus 386 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 460 (729)
.|++++|.. .+++.....+. +...+..+...+.+.|++++|...|+++.+..+ .+...+..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 455555555 55543333222 245566677777777777777777777776542 355666677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 004813 461 ALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNI---------------LIYGLCVM 525 (729)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 525 (729)
|...++.+.+.... +...+..+...|...|++++|...++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777765433 66677777777777777777777777777653 112222211 13333377
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 526 RKVDKAIRLRSLAYSSGTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
|++++|...|+++.+..... +..++..+...+...|++++|+..++++.+..+. +...|..+...+...|++++|.+.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887764221 4677788888888888888888888888776433 577788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----------HHhHHHHHHHHHhcCChhHHHH
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-----------SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
++++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +.+ ..+|..++.+|...|++++|..
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 88887742 2346777888888888888888888888877651 222 5778888888888888888887
Q ss_pred HHHH
Q 004813 674 LLDL 677 (729)
Q Consensus 674 ~~~~ 677 (729)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 7664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-17 Score=163.53 Aligned_cols=303 Identities=12% Similarity=-0.048 Sum_probs=139.1
Q ss_pred cCChhHHHH-HHHHHHHCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004813 250 NSRVDDSVS-ILGEMFDLGI---QLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDD 325 (729)
Q Consensus 250 ~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 325 (729)
.|++++|.. .+++..+... ..+...+..+...+.+.|++++|...|+++.+... .+..+|..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554432211 11234455566666666666666666666665432 345556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 326 ANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
|...|+++.+.. +.+..++ ..+...|...|++++|...++++....+.
T Consensus 117 A~~~~~~al~~~-~~~~~~~-------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTAL-------------------------------MALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhcC-CCCHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 666666666543 1233334 44444455555555555555555554443
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL-DSISYSKLV 484 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 484 (729)
+...+..+.... . ...+. ..+.. +..+...|++++|...++.+.+..... +..++..+.
T Consensus 165 ~~~~~~~~~~~~-------~-----------~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 165 YAHLVTPAEEGA-------G-----------GAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TGGGCC----------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cHHHHHHHHHHh-------h-----------hhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 222222110000 0 00000 00001 111113444444444444444332111 244444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh
Q 004813 485 EGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK 564 (729)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 564 (729)
..|.+.|++++|...++++.... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 55555555555555555554432 2234455555555555555555555555555442 233445555555555555555
Q ss_pred HHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCAL----------DVEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
+|...|+++.+..+.. ...+|..+..+|...|++++|..++.+
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5555555555432111 145566666666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-17 Score=158.38 Aligned_cols=237 Identities=12% Similarity=0.099 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 004813 181 RGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSIL 260 (729)
Q Consensus 181 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 260 (729)
|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666662 2236667777777777777777776432 35556666666666666676666655
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 004813 261 GEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 555542 2445566666666666666666666553 145556666666666666666666666644
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 004813 341 TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCEN 420 (729)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (729)
..| ..++.++.+.|++++|.+.++++. ++.+|..++.+|...
T Consensus 149 --~n~-------------------------------~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 149 --SNF-------------------------------GRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDG 190 (449)
T ss_dssp --TCH-------------------------------HHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHT
T ss_pred --hhH-------------------------------HHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHc
Confidence 133 555666666666666666666551 455566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 421 EEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 421 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
|+++.|......+ ...+.-...++..|.+.|.+++|..+++...... +-....|+-+.-.|++
T Consensus 191 ~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 191 KEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6666663333221 1122223345555666666666666666655443 2244455555444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-16 Score=161.69 Aligned_cols=375 Identities=9% Similarity=-0.048 Sum_probs=219.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-----
Q 004813 271 ELSFYTCIIPMLCRENKLEEAIRLFKMMRAL--------DLMPDELTYEELINCLCENLRLDDANDILEDMIVIG----- 337 (729)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----- 337 (729)
....||.|...+...|++++|++.|++..+. .-.....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777665431 111235678888888888888888888888776421
Q ss_pred -CCC-CHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 004813 338 -LTP-TDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIR 415 (729)
Q Consensus 338 -~~p-~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 415 (729)
..+ ...++.....++. ....+++++|...|++..+..+.+...+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~-----------------------------~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRL-----------------------------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHH-----------------------------HHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHH-----------------------------HHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 1233322222211 122345666666666666665555555544444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004813 416 WL---CENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK----LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 416 ~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
.+ ...++.++|++.+++..+..+. +...+..+...+.. .+++++|.+.+++.....+. +...+..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHH
Confidence 32 2345556666666666654322 33444444333332 34566677777776665433 5566667777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHh
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV-------------------MRKVDKAIRLRSLAYSSGTSYTTST 549 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~~~~~~~~~~~~~ 549 (729)
..|++++|...++++.+.. +.+..++..+..+|.. .+..+.|...+++..+.. +.+..+
T Consensus 259 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 7777777777777776642 3344555555544432 223567888888887765 455677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVE--AYCILIQ-SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
+..+...+...|++++|++.|++.++....+... .+..+.. .+...|++++|++.|++.++ +.|+......
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---- 410 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---- 410 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH----
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH----
Confidence 8889999999999999999999998875443221 2223332 23578999999999999998 4565433222
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHH
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG-WVPDATTH 690 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~ 690 (729)
....+.+++++..+. .+.++.+|..++.+|...|++++|++.|++.++.| ..|+..+|
T Consensus 411 -----~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 -----MKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -----HHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -----HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 234455666666665 46788899999999999999999999999999864 24554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=162.08 Aligned_cols=266 Identities=7% Similarity=-0.062 Sum_probs=181.6
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
+...|..+...+.+.|++++|...|+++....+ .+..++..+...+...|++++|...|+.+.+.... +...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 444577777777778888888888887776643 35667777777788888888888888887776433 5677777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLS-----------SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YTTSTYTKI 553 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 553 (729)
.|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888888888877642 22 122234466777778888888888887776422 156677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
...+...|++++|++.|+++.+..+. +..+|..+..+|...|++++|.+.|+++++.. +.+...+..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 77788888888888888887776433 57777778888888888888888888777742 22366777777778888888
Q ss_pred HHHHHHHHHHHhCCCC-----------CCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 634 HLVSSGINKLVSDSEV-----------LDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
++|...++++.+.... .+...|..+..++...|+.+.|.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888777664100 0256777788888888887777666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=161.94 Aligned_cols=265 Identities=10% Similarity=-0.094 Sum_probs=218.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
+...+..+...+.+.|++++|...|+.+.+..+. +...+..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4456888889999999999999999999987554 78899999999999999999999999998864 456889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-H----------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYT-T----------STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LDVEAYCIL 588 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l 588 (729)
+|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|++.++++.+..+. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998754 32 2 22334578889999999999999999987443 268899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
...|...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|+..++++.+. .+.+...|..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999999853 335889999999999999999999999999987 466788999999999999999
Q ss_pred hHHHHHHHHHHhCC---CCC--------CHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 669 SQASYLLDLMLGKG---WVP--------DATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 669 ~~A~~~~~~~~~~g---~~p--------~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
++|.+.++++.+.. ..| +...|..+..++...|..+.+.....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999998632 011 25778888888888888887776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-16 Score=151.48 Aligned_cols=290 Identities=11% Similarity=0.085 Sum_probs=100.2
Q ss_pred HHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 004813 69 VLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVN 148 (729)
Q Consensus 69 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (729)
++.+.|+.++|.++++.. +.+.+|..++.++.+.|++++|++.|.+. ++...|..++.++...|+++
T Consensus 12 ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHH
Confidence 344566677777777765 12246777777777777777777777542 34556777777777777777
Q ss_pred hHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 149 GAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRM 228 (729)
Q Consensus 149 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 228 (729)
+|+.+++..++. .+++.+.+.++.++.+. |+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 777766655542 34456666777777777 77777666653 355567777777777777777777777655
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 004813 229 HKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDEL 308 (729)
Q Consensus 229 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 308 (729)
..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. ..+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 35667777777777777777777766 256667777777777777777755443322 2222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc--CChHHHHHHHHhhcCCCCCCchHHHHHHHhc
Q 004813 309 TYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV--GKFDESVNFLEDKCGYVTSPHNALLECCCNA 386 (729)
Q Consensus 309 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~ 386 (729)
-...++..|.+.|.+++|..+++..+... .-....|..+...+++- ++..+.++.|...... ..++++|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini-----~k~~~~~~-- 280 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI-----PKVLRAAE-- 280 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH-----HHHHHHHH--
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC-----cHHHHHHH--
Confidence 23356666777777777777776665432 22344454444444332 2233333333211110 11122111
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHH
Q 004813 387 GKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYE 428 (729)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 428 (729)
+...|..+...|.+.++++.|..
T Consensus 281 -------------------~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 281 -------------------QAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -------------------TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhhchHHHHHH
Confidence 45577777777777788877765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-16 Score=154.58 Aligned_cols=265 Identities=8% Similarity=-0.051 Sum_probs=193.7
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEG 486 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (729)
...+..+...+...|++++|..+|+++....+ .+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 34555666677777777777777777766542 25566667777777777788888777777765433 56677777777
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 004813 487 LCQVEKITEAVEVFCCMSKNGCSLSSSSFNIL--------------IY-GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYT 551 (729)
Q Consensus 487 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 551 (729)
+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 777888888888888777653 1222222222 22 3667788888888888888765 34677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS 631 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (729)
.+...+...|++++|.+.++++.+..+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+..+|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 8888888888899998888888877443 67788888888888899999999998888753 235677888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCC------------CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 632 QLHLVSSGINKLVSDSEVL------------DSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
++++|.+.++++.+.. +. +...|..++.++...|++++|.+++++.
T Consensus 255 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998887762 22 4678888999999999999998887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-16 Score=155.08 Aligned_cols=265 Identities=13% Similarity=-0.039 Sum_probs=219.5
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhc
Q 004813 376 HNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKL 455 (729)
Q Consensus 376 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 455 (729)
+..+...+...|++++|..+|+++.+..+.+...+..+...+...|++++|...++++.... +.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 45667788889999999999999988877778888899999999999999999999998874 33677888888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 456 CNYEDALRVFRQVSAQSLVLDSISYSKL--------------VE-GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIY 520 (729)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 520 (729)
|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 9999999999999876433 22222222 22 3778899999999999998864 447888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
.+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+...|...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998875 456788999999999999999999999999887543 68889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 601 CALFFNVMVKAGLVP-----------DRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
|.+.++++.+..... +...+..+..++...|+.++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998752221 367888999999999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=146.51 Aligned_cols=256 Identities=11% Similarity=-0.004 Sum_probs=182.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 004813 416 WLCENEEIRKAYELLGRMVVSSVVPDC--ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI 493 (729)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 493 (729)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-.|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567777777777665433 2332 3445566778888888888875543 1345666777788888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 494 TEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQ 572 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 572 (729)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765434 455666677788888888888888776 46677788888888888888888888888
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC
Q 004813 573 MLVEGCALDVEAY---CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV 649 (729)
Q Consensus 573 ~~~~~~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (729)
+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+. .+
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DS 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 88764 332211 12334444557888888888888876 3446778888888888888888888888888876 46
Q ss_pred CCHHhHHHHHHHHHhcCChhH-HHHHHHHHHhCCCCCCHHH
Q 004813 650 LDSSMYNILINGLWKEGLTSQ-ASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 689 (729)
.++.++..++..+...|+.++ +.++++++.+ ..|+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 677788888888888888865 5678888876 3566543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-15 Score=156.52 Aligned_cols=386 Identities=11% Similarity=-0.032 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKK-----G--CCP-NSRTFEIVIKGLIANSRVDDSVSILGEMFDL-----G 267 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~ 267 (729)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777777777777777765431 1 112 3456777777777788888887777766531 1
Q ss_pred -CC-CCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCC
Q 004813 268 -IQ-LELSFYTCIIPMLCR--ENKLEEAIRLFKMMRALDLMPDELTYEELINC---LCENLRLDDANDILEDMIVIGLTP 340 (729)
Q Consensus 268 -~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 340 (729)
.. ....++..+..++.. .+++++|++.|++..+..+ -+...+..+..+ +...++.++|++.+++..+.. |
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--C
Confidence 11 123445544444444 3468888888888776542 233444444333 345677778888888777643 3
Q ss_pred C-HHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHh
Q 004813 341 T-DDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCE 419 (729)
Q Consensus 341 ~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (729)
+ ...+..+... +...+...+++++|.+.+++.....+.+..++..+...|..
T Consensus 207 ~~~~~~~~l~~~---------------------------~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 207 DNQYLKVLLALK---------------------------LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259 (472)
T ss_dssp SCHHHHHHHHHH---------------------------HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH---------------------------HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3 3333222211 11222334566777777777776666666677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
.|++++|...+++..+..+. +..++..+...|...+... .... ...........+.++.|...
T Consensus 260 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 88888888888777765322 3444544444432211000 0000 00000001112234566666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHH-HHHhcCChhHHHHHHHHHHHc
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTS--TYTKIML-GLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+++..+.. +.+..++..+...|...|++++|+..|+++.+....+... .+..+.. .....|++++|+..|++.++.
T Consensus 323 ~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 323 LKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66665542 3344556666666777777777777777766654322211 1222222 223556677777777776664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
. |+..... +....+.+++++.++.+ +.+..+|..+..+|...|++++|++.|++..+.
T Consensus 402 ~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 402 N--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp C--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred C--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 3322211 11233444455554432 224556777777777777777777777777765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=173.48 Aligned_cols=130 Identities=8% Similarity=0.018 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVK---AGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666666543 256666666666666666666666677777666666666777777777
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcchhhhhhhccc
Q 004813 659 INGLWKEGLT-SQASYLLDLMLGKGWVPDATTHGLLVGSSVGEEIDSRRFAFDS 711 (729)
Q Consensus 659 ~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 711 (729)
|+++++.|+. ++|.++|++|.+.|+.||..+|+++++++.+.+..+.+..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 7777766653 5666677777766777777777766666666666666665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-15 Score=142.72 Aligned_cols=275 Identities=7% Similarity=-0.043 Sum_probs=200.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHH
Q 004813 381 ECCCNAGKFFLAKCILEKMADRKIAD-CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYE 459 (729)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 459 (729)
+-....|++..|+..+++.....+.+ ......+..+|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33456678888888777665443332 234455678888888888888766541 3556677888888888888999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
+|.+.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999888765434 556667777888899999999998887 457788888888999999999999999998
Q ss_pred HHcCCCCCHHhH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 539 YSSGTSYTTSTY---TKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP 615 (729)
Q Consensus 539 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 615 (729)
.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...|+.+..++.+.|++++|.+.++++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8764 443211 2233444455889999999999988743 478888999999999999999999999988853 22
Q ss_pred CHHHHHHHHHHHhccCChHH-HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 616 DRETMLSLLHGLADGSQLHL-VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
+..++..++..+...|+.++ +.++++++.+. .|.++.+ .+...+.+.+++|..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-HRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCChHH----HHHHHHHHHHHHHHHH
Confidence 57788888888888888865 57888888876 2334433 2344555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=175.10 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=112.7
Q ss_pred cccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 004813 163 KLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK---AGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRT 239 (729)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 239 (729)
..-..+||++|.+|++. |+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 124 ~~~~~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44556788888888888 888888888877653 47788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHH
Q 004813 240 FEIVIKGLIANSRV-DDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD------ELTYEE 312 (729)
Q Consensus 240 ~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ 312 (729)
|+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++..+++ ..+..|+ ..+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 88888888888874 67888888888888888888888888766554 333333333 2233332 344445
Q ss_pred HHHHHHhcC
Q 004813 313 LINCLCENL 321 (729)
Q Consensus 313 li~~~~~~~ 321 (729)
|...|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=133.00 Aligned_cols=198 Identities=12% Similarity=-0.016 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..++++.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666777777777777777776643 3455666667777777777777777777776654 344556666667
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 556 GLVKL-----------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 556 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
++... |++++|+..|++.++..+. +...|..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77776 8888888888888877544 67778888888888888888888888888876 5778888888
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+|...|++++|+..++++.+. .|.+...+..++..+...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888876 45677788888888888888888888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=135.51 Aligned_cols=239 Identities=13% Similarity=0.004 Sum_probs=170.9
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLS----SSSFN 516 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 516 (729)
..+..+...+...|++++|...|+.+.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455566666777777777777777776665 4666777777777777777777777777665320 111 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN 596 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 596 (729)
.+...+...|++++|...|+++.+.. |+. ..+.+.|++++|...++++....+. +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 77777777888888888887777653 332 3455667788888888888776332 4566777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
++++|.+.++++.+.. +.+...+..+..+|...|++++|...++++.+. .+.+...|..++..|...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888753 235777888888888888899999888888876 35567788888999999999999999988
Q ss_pred HHHhCC----CCCCHHHHHHHHh
Q 004813 677 LMLGKG----WVPDATTHGLLVG 695 (729)
Q Consensus 677 ~~~~~g----~~p~~~~~~~ll~ 695 (729)
+..+.. ..|+.......+.
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHH
Confidence 887632 1266555444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-14 Score=145.11 Aligned_cols=345 Identities=8% Similarity=-0.037 Sum_probs=147.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRL---DDANDILEDMIVIGLTPTDDVFVDIVRGLCE 354 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 354 (729)
+...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778888888888888887765 334455566666667777 7888888887753 44445444443333
Q ss_pred cC-----ChHHHHHHHHhhc-CCCCCCchHHHHHHHhcCChh---HHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHH
Q 004813 355 VG-----KFDESVNFLEDKC-GYVTSPHNALLECCCNAGKFF---LAKCILEKMADRKIADCDSWNIPIRWLCENEEIRK 425 (729)
Q Consensus 355 ~~-----~~~~a~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 425 (729)
.+ +.++|.+.+++.. ..++..+..|...|...+..+ .+.+.+......+ +...+..+...|...+.+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCccc
Confidence 32 4555555555422 223334455555554443322 2333333333322 33444455555555443333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----CCHHHHHH
Q 004813 426 AYELLGRMVVSSVVPDCATYSAFVLGKCKLC---NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV----EKITEAVE 498 (729)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 498 (729)
+......+...-...+...+..+...|...| +.++|...|+...+.|.. +...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 2222222211111112224444444555555 555555555555555432 333333444444333 45555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHH
Q 004813 499 VFCCMSKNGCSLSSSSFNILIYG-L--CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ-----RAKDLLVVL 570 (729)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~ 570 (729)
.|++.. . -+...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|.+.|
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 555554 2 233344444443 2 23455555555555555443 3344444444444 22 555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHH
Q 004813 571 AQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINK 642 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 642 (729)
++.. . -+...+..+...|.. ..++++|..+|++..+.|. |+ ....|...|.. ..+.++|...++.
T Consensus 311 ~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 311 EKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 5544 2 134444444444443 2255555555555554432 12 22233333332 2345555555555
Q ss_pred HHhCC
Q 004813 643 LVSDS 647 (729)
Q Consensus 643 ~~~~~ 647 (729)
..+.|
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 55543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-14 Score=132.99 Aligned_cols=225 Identities=8% Similarity=0.042 Sum_probs=171.0
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 004813 408 DSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV--LD----SISYS 481 (729)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 481 (729)
..|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666777777888888888888877766 56777777888888888888888888877764221 11 56777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.+...+...|++++|...|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888774 3443 34556677888888888887753 334567777888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGIN 641 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (729)
++++|...++++.+..+. +...|..+...+...|++++|.+.++++++.. +.+...+..+..++...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888877544 67788888888888888888888888888753 2246778888888888888888888888
Q ss_pred HHHhC
Q 004813 642 KLVSD 646 (729)
Q Consensus 642 ~~~~~ 646 (729)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88775
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=140.15 Aligned_cols=374 Identities=9% Similarity=-0.042 Sum_probs=207.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004813 208 LLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRV---DDSVSILGEMFDLGIQLELSFYTCIIPMLCR 284 (729)
Q Consensus 208 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (729)
+...+.+.|++++|+++|++..+.| +...+..|...+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445556667777777776665544 222333344444455555 6677776666643 33444445553444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 004813 285 EN-----KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLD---DANDILEDMIVIGLTPTDDVFVDIVRGLCEVG 356 (729)
Q Consensus 285 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 356 (729)
.+ ++++|++.|++..+.|. ...+..|...|...+..+ ++.+.+......|. ....
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~----------- 144 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAG----------- 144 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHH-----------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHH-----------
Confidence 33 56777777777776543 225555555555544332 34444444444332 2222
Q ss_pred ChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcccchHHHHHHHhcC---CHHHHHHH
Q 004813 357 KFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCI----LEKMADRKIADCDSWNIPIRWLCENE---EIRKAYEL 429 (729)
Q Consensus 357 ~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 429 (729)
..+...|...+.++.+... ++..... ++..+..+...|...| +.++|++.
T Consensus 145 --------------------~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 145 --------------------LAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp --------------------HHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 3344445555544333333 3333222 4447777777777777 77888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHH
Q 004813 430 LGRMVVSSVVPDCATYSAFVLGKCKL----CNYEDALRVFRQVSAQSLVLDSISYSKLVEG-L--CQVEKITEAVEVFCC 502 (729)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~ 502 (729)
|++..+.| .++...+..+...|... +++++|..+|+... .| ++..+..+... + ...+++++|.+.|++
T Consensus 202 ~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 202 MEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 88877776 33444445555555443 67888888888877 32 44555566655 3 457888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHH
Q 004813 503 MSKNGCSLSSSSFNILIYGLCVMR-----KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK----LQRAKDLLVVLAQM 573 (729)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 573 (729)
..+.| +...+..|...|. .| ++++|.+.|++.. .-+...+..|...|.. ..++++|...|++.
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 88765 5667777777776 44 8888888888777 3455666666666665 34888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 574 LVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.+.|. ......|...|.. ..+.++|..+|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 349 a~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 349 ARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87663 3344455556653 45788888888888876632 222222233333334455666666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-12 Score=123.13 Aligned_cols=224 Identities=11% Similarity=-0.009 Sum_probs=180.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAVEVFCCMSKNGCSLSSSSFN 516 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 516 (729)
+..++..+...+...|++++|...|+...+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777888888888888887773 245667777777887 888888888888888764 677777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 517 ILIYGLCV----MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK----LQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 517 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888888888888888764 66777788888888 888999999998888865 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 589 IQSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 589 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888877 889999999999988763 56677788888888 899999999999998874 3677888899
Q ss_pred HHHh----cCChhHHHHHHHHHHhCC
Q 004813 661 GLWK----EGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 661 ~~~~----~g~~~~A~~~~~~~~~~g 682 (729)
.|.. .|++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 899999999999998865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-13 Score=125.29 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=132.9
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILI 519 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 519 (729)
++...+..+...+.+.|++++|...|+...+..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34555666666777777777777777777765443 56667777777777777777777777776653 33556667777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 004813 520 YGLCVM-----------RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCIL 588 (729)
Q Consensus 520 ~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 588 (729)
.++... |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 88888888888887764 3456677777788888888888888888888776 577778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
..+|...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888888887742 2246677777888888888888888777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-13 Score=126.71 Aligned_cols=212 Identities=10% Similarity=-0.078 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556677777778888888888888877653 3466777788888888888888888888887764 3456777778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732334 45667778888888899999999988888753 2257778888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
|...++++.+. .+.+...+..++..+...|++++|.++++++.+. .|+...+..++
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 99999988876 4567778888888999999999999999998874 46655554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-11 Score=126.94 Aligned_cols=234 Identities=11% Similarity=-0.027 Sum_probs=158.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 460 DALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAV-EVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
.+..+|++.+.... .+...|-..+..+...|+.++|. ++|++.... ++.+...|...+....+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666665432 36677777777777778877886 888888764 3445666777777777888888888888887
Q ss_pred HHcCC---------CC------------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C
Q 004813 539 YSSGT---------SY------------TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ-N 596 (729)
Q Consensus 539 ~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~ 596 (729)
.+... .| ...+|...+....+.|+.+.|..+|.+..+....+....|...+..-.+. +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 75310 12 12357777777777788888888888887751111233343333333333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV--LDSSMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
+.+.|..+|+..++. ..-+...|...+......|+.+.|..+|++......+ .....|...+..-.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 588888888888875 3335566667777777788888888888888876321 1345788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 675 LDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 675 ~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
.+++.+. .|+......++.-|.
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHh--CCCCcHHHHHHHHhc
Confidence 8888874 566666666666664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-13 Score=129.29 Aligned_cols=238 Identities=13% Similarity=0.012 Sum_probs=136.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 004813 447 AFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSL--SSSSFNILIYGLCV 524 (729)
Q Consensus 447 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 524 (729)
.....+...|++++|...|+.+.+..+. +...+..+...|...|++++|...++++.+.+-.+ ....|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555556666666666665554322 33345555556666666666666666665522111 12235556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|++++|++.|+++.+.. +.+..++..+...|...|++++|++.|++..+..+. +...|..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666543 234455666666666666666666666666555322 455555555233333477777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCC---hHHHHHHHHHHHhCC-CCCC------HHhHHHHHHHHHhcCChhHHHH
Q 004813 605 FNVMVKAGLVPD-RETMLSLLHGLADGSQ---LHLVSSGINKLVSDS-EVLD------SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 605 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
|+++.+. .|+ ...+..+..++...|+ .++|...++++.+.. ..|+ ...|..++..|...|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7776663 233 4555566666666666 666666666665541 1122 2466777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHH
Q 004813 674 LLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 674 ~~~~~~~~g~~p~~~~~~ 691 (729)
.++++.+. .|+.....
T Consensus 243 ~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 243 AWKNILAL--DPTNKKAI 258 (272)
T ss_dssp HHHHHHHH--CTTCHHHH
T ss_pred HHHHHHhc--CccHHHHH
Confidence 88888763 46554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-13 Score=133.60 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=197.8
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEK-ITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
..|..+...+.+.|++++|+..++.+++.... +...|..+...+...|+ +++|+..|++++... +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666677788889999999999998887654 77888888888999996 999999999998864 4477888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE-QNKLKD 600 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 600 (729)
+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998876 567788889999999999999999999999988665 78889999988888 566577
Q ss_pred H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC------
Q 004813 601 C-----ALFFNVMVKAGLVP-DRETMLSLLHGLADGS--QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEG------ 666 (729)
Q Consensus 601 A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 666 (729)
| ++.|++.++. .| +...|..+...+...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 5888888874 44 4678888888888888 689999999888 44 4667788899999998874
Q ss_pred --C-hhHHHHHHHHH-HhCCCCCCHHH-HHHHHhhhh
Q 004813 667 --L-TSQASYLLDLM-LGKGWVPDATT-HGLLVGSSV 698 (729)
Q Consensus 667 --~-~~~A~~~~~~~-~~~g~~p~~~~-~~~ll~~~~ 698 (729)
+ .++|+++++++ .+ +.|+..- |..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 2 58999999998 65 4565543 454444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-13 Score=128.45 Aligned_cols=245 Identities=7% Similarity=-0.012 Sum_probs=124.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVL--DSISYSKLVEGLCQ 489 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 489 (729)
.....+...|++++|+..|++..+..+. +...+..+...+...|++++|...++.+.+.+..+ ....|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444455555555555555443211 22344444445555555555555555555422111 12234555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555532 2344555556666666666666666666555542 23344444444233333466666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHhccCChHHHHHH
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNK---LKDCALFFNVMVKA-GLVPD------RETMLSLLHGLADGSQLHLVSSG 639 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 639 (729)
|+++.+..+. +...+..+...+...|+ +++|...++++.+. .-.|+ ...|..+...|...|++++|.+.
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666655322 34555555555655555 55666666665543 11122 13555566666667777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHH
Q 004813 640 INKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
++++.+. .|.+...+..+...
T Consensus 244 ~~~al~~-~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 244 WKNILAL-DPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHH-CTTCHHHHHHHC--
T ss_pred HHHHHhc-CccHHHHHHHhhhh
Confidence 7776665 24444444444333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=121.93 Aligned_cols=213 Identities=11% Similarity=-0.062 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566667777777777777777777776643 3456677777777777788888888887777654 345667777777
Q ss_pred HHHhc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 556 GLVKL-QRAKDLLVVLAQMLVEGCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 556 ~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 78888 888888888888777322233 5667777788888888888888888887742 22467777888888888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 634 HLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
++|...++++.+. .+ .+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 164 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 8888888888776 34 56777777888888888888888888888753 46665555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-13 Score=132.35 Aligned_cols=250 Identities=7% Similarity=0.018 Sum_probs=203.6
Q ss_pred cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 407 CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCN-YEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
...|+.+...+...|++++|++.+++.+...+. +...|..+...+...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 446677778888889999999999998887533 56778888888999996 99999999999987665 7888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCChh
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK-LQRAK 564 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 564 (729)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998864 4578889999999999999999999999999876 4567889999999988 56657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------
Q 004813 565 DL-----LVVLAQMLVEGCALDVEAYCILIQSMSEQN--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS------ 631 (729)
Q Consensus 565 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 631 (729)
+| ++.+++.++..+. +...|+.+...+...| ++++|.+.+.++ +. -..+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5889998887655 7788988888888888 689999999888 32 2335677888888888864
Q ss_pred ---ChHHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHh
Q 004813 632 ---QLHLVSSGINKL-VSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 632 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 664 (729)
..++|+++++++ .+. -+.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHH
Confidence 358999999999 665 34455677777766654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=127.67 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44456666667777778888888887777643 3456677777777778888888888888777664 345667777778
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888776433 66777778888888888888888888887752 2356777888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
|...++++.+. .+.+..+|..++.+|...|++++|.+.++++.+. .|+....
T Consensus 178 A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~ 229 (243)
T 2q7f_A 178 ALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLA 229 (243)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHH
Confidence 88888888876 3556778888888899999999999999888874 4554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-11 Score=125.13 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR---VNGAMR 152 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 152 (729)
....+..|+...... +.+...|..++..+.+.+.++.+..+|+++...- |.....|...+..-.+.+. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344454555555543 5788899999999888899999999999988774 7788888888888888888 999999
Q ss_pred HHHHHHhCC-CcccHHhHHHHHHHHHhcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh------
Q 004813 153 VLVNMNSGG-FKLSVDVFNVVLGAIVEEKRGF--------ADFVFVYKEMVK-AGI-VPN-VDTLNYLLEVLFE------ 214 (729)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~------ 214 (729)
+|++..... .+|++..|...+....+. ++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 999987653 137888888888776665 543 334467777654 354 443 4577777665432
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 004813 215 ---TNRIESALDQFRRMHK 230 (729)
Q Consensus 215 ---~~~~~~A~~~~~~m~~ 230 (729)
.++++.+..+|++.+.
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3446677788877774
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-11 Score=117.80 Aligned_cols=225 Identities=8% Similarity=0.024 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCcccHHhH
Q 004813 94 HTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN----HYRVNGAMRVLVNMNSGGFKLSVDVF 169 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 169 (729)
.++.++..+...+...|++++|...|++..+. .+..++..+...|.. .+++++|.++|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677788888888999999999999988873 456788888888888 999999999999998765 56777
Q ss_pred HHHHHHHHh----cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 004813 170 NVVLGAIVE----EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFE 241 (729)
Q Consensus 170 ~~ll~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 241 (729)
..+-..+.. . +++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 777777877 7 99999999999998864 67888888888888 899999999999988865 566777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 004813 242 IVIKGLIA----NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEEL 313 (729)
Q Consensus 242 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 313 (729)
.+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77788887 889999999999988764 45677788888888 899999999999988864 36677778
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcC
Q 004813 314 INCLCE----NLRLDDANDILEDMIVIG 337 (729)
Q Consensus 314 i~~~~~----~~~~~~a~~~~~~m~~~~ 337 (729)
...|.. .+++++|...|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 899999999999988865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=131.62 Aligned_cols=221 Identities=11% Similarity=-0.093 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVV---PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEA 496 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 496 (729)
.|++++|+..++++.+.... .+..++..+...+...|++++|...|+.+.+.... +...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45555666666655544211 12344555555555566666666666555554322 455555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 497 VEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
...|+++.+.. +.+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66555555532 2234555555555555555555555555555432 22222222233334445555555555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV--P-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.. ++...+. ++..+...++.++|.+.++++.+.... | +...+..+...|...|++++|...++++.+.
T Consensus 174 ~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 SD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 21 1222222 333444444445555555444432100 0 0233444444444455555555555544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-13 Score=125.94 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=118.7
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...|..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344455555555666666666666666554332 45556666666666666666666666665542 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666554 344556666666666677777777777766665332 556666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
.+.++++.+.. ..+...+..+..+|...|++++|.+.++++.+. .+.+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-QPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-CcchHHHHHHH
Confidence 77777766642 224556666777777777777777777777665 23344444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-12 Score=120.71 Aligned_cols=200 Identities=11% Similarity=-0.007 Sum_probs=138.4
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
..+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555666666777777777777776665332 56666777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 3456666777777777788888777777776433 566777777777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+++++.+.. ..+...+..+...+...|+.++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888777642 235566677777777788888888888877775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=129.38 Aligned_cols=248 Identities=12% Similarity=-0.028 Sum_probs=165.2
Q ss_pred cCCChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 72 NTNDLSSALKIFKWVSIQKRF--QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
..++++.|+..|+.+.+.... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456788888888888765211 2346677888888888888888888888888775 5677888888888888888888
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMH 229 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 229 (729)
|.+.|+++.+.. +.+...+..+...+.+. |++++|...|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888887653 34566777777777777 8888888888888775 3444444444455566688888888887666
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004813 230 KKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQL---ELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPD 306 (729)
Q Consensus 230 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 306 (729)
... +++...+ .++..+...++.++|...++...+..... +..++..+...|.+.|++++|...|++..+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 542 2233333 35566666777777777777766432111 14566677777777777777777777777643 32
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHH
Q 004813 307 ELTYEELINCLCENLRLDDANDIL 330 (729)
Q Consensus 307 ~~~~~~li~~~~~~~~~~~a~~~~ 330 (729)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 222234555666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-12 Score=116.23 Aligned_cols=202 Identities=12% Similarity=-0.020 Sum_probs=128.4
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYG 521 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (729)
...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555566666666666666666666654332 45566666666666777777777777666542 3355566666667
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004813 522 LCVM-RKVDKAIRLRSLAYSSGTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLK 599 (729)
Q Consensus 522 ~~~~-~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 599 (729)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777665222222 455666666777777777777777777665433 4666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+|.++++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777766422134555666666667777777777777776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-13 Score=135.86 Aligned_cols=271 Identities=14% Similarity=0.029 Sum_probs=191.4
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHH
Q 004813 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDC----ATYSAFVLGKCKLCNYEDALRVFRQVSAQ----S-LVLDSISY 480 (729)
Q Consensus 410 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 480 (729)
+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + .......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334555667777777777777777765322 22 35666677777788888888877776543 1 11234556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN----G-CSLSSSSFNILIYGLCVMRK-----------------VDKAIRLRSLA 538 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~ 538 (729)
..+...|...|++++|...++++.+. + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77777888888888888888877553 1 01124467777788888888 88888888776
Q ss_pred HHc----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 539 YSS----GT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVM 608 (729)
Q Consensus 539 ~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 608 (729)
.+. +. .....++..+...+...|++++|++.+++..+.... ++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11 112346777888889999999999999888764111 12 236778888999999999999999988
Q ss_pred HHCC--CC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 609 VKAG--LV---PDRETMLSLLHGLADGSQLHLVSSGINKLVSD----S-EVLDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 609 ~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.+.. .. ....++..+...|...|++++|...+++..+. + ......++..++..|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7641 11 11457778888999999999999999988765 1 1112347888999999999999999999998
Q ss_pred HhC
Q 004813 679 LGK 681 (729)
Q Consensus 679 ~~~ 681 (729)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-12 Score=111.75 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004813 511 SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQ 590 (729)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 590 (729)
+..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56677777788888888888888888877765 345667777778888888888888888887776544 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
.+...++++.|.+.+.+..+.. +-+...+..+..+|.+.|++++|++.+++..+. .|.+...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887742 224667778888888888888888888888876 35677788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 004813 671 ASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 671 A~~~~~~~~~~g~~p~~~ 688 (729)
|.+.|++.++. .|+..
T Consensus 160 A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHhC--CccCH
Confidence 88888888873 46543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=135.79 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=173.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCC----cccchHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHhHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIAD----CDSWNIPIRWLCENEEIRKAYELLGRMVVS----SVVP-DCATYSA 447 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ 447 (729)
......+...|++++|...|++.....+.+ ...+..+...+...|++++|...+++.... +-.| ...++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345556677777777777777777665443 245667777777788888888877775432 1111 2345566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHccCC--------------------HHHHHHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQSL-----VLDSISYSKLVEGLCQVEK--------------------ITEAVEVFCC 502 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 502 (729)
+...+...|++++|...++...+... .....++..+...|...|+ +++|...+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777888888877777654310 0013356667777777777 7777777776
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 503 MSKN----GCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-SYT----TSTYTKIMLGLVKLQRAKDLLVVLAQ 572 (729)
Q Consensus 503 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 572 (729)
.... +..+ ...++..+...|...|++++|...++++.+... .++ ..++..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5432 1011 133566666777777777777777776654310 111 22566666677777777777777776
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 573 MLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 573 ~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
..+.... ++ ..++..+...|...|++++|.+.+++..+... ..+ ..++..+...|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6543111 11 34556666677777777777777776654310 111 34555666666777777777777766
Q ss_pred HHhC----CC-CCCHHhHHHHHHHHHhcCCh
Q 004813 643 LVSD----SE-VLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 643 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 668 (729)
..+. +. +....++..+...+...|+.
T Consensus 333 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 333 HLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 5543 11 11233555566666666655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=128.38 Aligned_cols=269 Identities=15% Similarity=0.049 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLV-LDSISYSK 482 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 482 (729)
.....+...|++++|...|+++...... + ...+..+...+...|++++|...++...+. +.. .....+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3345556667777777777766655322 2 245556666677777777777777665432 111 12445666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCVMRK--------------------VDKAIRLRSL 537 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 537 (729)
+...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777778888888877777654210 011 3366677777777777 7888777776
Q ss_pred HHHc----CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004813 538 AYSS----GT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCALFFNV 607 (729)
Q Consensus 538 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 607 (729)
..+. +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6432 11 11234667777888888999999988888765311 111 33677888888999999999999998
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 608 MVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD----S-EVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 608 ~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
..+... ..+ ..++..+...|...|++++|...++++.+. + ......++..++..|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 875310 112 456777888899999999999999988764 1 111144788899999999999999999999
Q ss_pred HHhC
Q 004813 678 MLGK 681 (729)
Q Consensus 678 ~~~~ 681 (729)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=131.19 Aligned_cols=212 Identities=11% Similarity=-0.060 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKI-TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
++.+...++....... .+...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666555433 3677777888888888888 88888888887753 3457778888888888888888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 004813 537 LAYSSGTSYTTSTYTKIMLGLVKL---------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ--------NKLK 599 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~ 599 (729)
++.+.. |+...+..+...+... |++++|++.|++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888764 5567777888888888 8888888888888887544 677888888888888 8899
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 600 DCALFFNVMVKAGLVP----DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLL 675 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (729)
+|++.|++.++. .| +...|..+..+|...|++++|.+.|+++.+. .+.+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998884 44 6788888899999999999999999998887 3556778888999999999988888765
Q ss_pred HH
Q 004813 676 DL 677 (729)
Q Consensus 676 ~~ 677 (729)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-12 Score=129.77 Aligned_cols=296 Identities=15% Similarity=0.037 Sum_probs=221.6
Q ss_pred ccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 004813 408 DSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSI 478 (729)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 478 (729)
..+......+...|++++|...|++....+.. + ...+..+...+...|++++|...++...+. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34556677888999999999999999887433 3 356778888999999999999999887543 2111 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS----SSSFNILIYGLCVMRK--------------------VDKAIR 533 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 533 (729)
.+..+...|...|++++|...++++.+... .++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678888999999999999999998865310 011 4477888899999999 999999
Q ss_pred HHHHHHHc----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 004813 534 LRSLAYSS----GTS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 534 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 98887543 111 1234678888999999999999999999876411 122 3377888899999999999999
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHH
Q 004813 604 FFNVMVKAGL-VPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 604 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.+++..+... .++ ..++..+...|...|++++|...+++..+. +.. ....++..++..|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876310 112 457788889999999999999999998765 111 115578899999999999999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHhhhhhcchhh
Q 004813 674 LLDLMLGK----GWVP-DATTHGLLVGSSVGEEIDS 704 (729)
Q Consensus 674 ~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 704 (729)
.+++..+. |..+ ...++..+...+...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99987753 2122 1344566666777777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=132.03 Aligned_cols=270 Identities=10% Similarity=-0.006 Sum_probs=204.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----ccchHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHhHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADC----DSWNIPIRWLCENEEIRKAYELLGRMVVS----S-VVPDCATYSA 447 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~ 447 (729)
..+...+...|++++|...|+++.+..+.+. ..|..+...+...|++++|...+++.... + .......+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4456677888899999999988888765543 46788888899999999999999887643 1 1223456777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQ----S-LVLDSISYSKLVEGLCQVEK-----------------ITEAVEVFCCMSK 505 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~ 505 (729)
+...+...|++++|...+++..+. + .......+..+...|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888889999999999999887653 1 11234567888888999999 9999999888754
Q ss_pred C----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 506 N----GCS-LSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 506 ~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
. +.. ....++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 111 12347788888999999999999999988764211 11 23678888999999999999999998876
Q ss_pred cCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 576 EGCA-L----DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 576 ~~~~-p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.... . ...++..+...|...|++++|.+++++..+. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4211 1 1467788889999999999999999988764 1111 134777888999999999999999999887
Q ss_pred C
Q 004813 646 D 646 (729)
Q Consensus 646 ~ 646 (729)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-10 Score=112.30 Aligned_cols=218 Identities=7% Similarity=-0.061 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLC-------QVEKI-------TEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
+.|..+|+++....+. +...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777765433 6667777766665 34775 8899999998873113356688888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYT-TS-TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS-EQNKLKDC 601 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A 601 (729)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 343 33 7888888888899999999999998876443 4455544333322 36999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 602 ALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-EVL--DSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
.++|++.++.. +-+...|..++..+.+.|+.++|+.+|+++.+.. .+| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988752 2257788888888999999999999999999862 343 4668888999999999999999999998
Q ss_pred HhC
Q 004813 679 LGK 681 (729)
Q Consensus 679 ~~~ 681 (729)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-11 Score=106.52 Aligned_cols=166 Identities=8% Similarity=-0.023 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...|..+...|.+.|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...+..+.... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444455555555555555555555554432 2234444555555555555555555555544433 2233344444444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+...++++.|.+.+.+.....+. +...+..+...|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555444322 44445555555555555555555555555431 11344455555555555555555
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
++.|+++.+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 5555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-11 Score=123.47 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=176.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNG--C----SLSSSSFN 516 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 516 (729)
....+...|++++|...++...+. +-.+ ...++..+...|...|++++|...+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677889999999999998764 1111 34578888999999999999999999886531 1 11235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----GC-ALDVEAYC 586 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~ 586 (729)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|++.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988754211 11 247788999999999999999999998872 22 22466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKA----GLVPDRETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+...|...|++++|.+.+++..+. +-......+..+...|...|+ +++|+.++++... .+.....+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8999999999999999999998764 111112335667788889999 7777777776621 223345778899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004813 660 NGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-12 Score=124.78 Aligned_cols=237 Identities=12% Similarity=0.008 Sum_probs=135.7
Q ss_pred HhHHHHHHHHhhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-
Q 004813 443 ATYSAFVLGKCKLCNYEDALRVFRQVSAQ-------SLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN------GC- 508 (729)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~- 508 (729)
.++..+...+...|++++|..+++.+.+. ........+..+...|...|++++|...++++... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555556666666666666555542 11223444555666666666666666666666542 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 004813 509 SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------GTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE----- 576 (729)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 576 (729)
+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 123445566666677777777777777666543 1112 2345666777777777777777777777654
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHhccCChHHHHHHH
Q 004813 577 -GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA-------GLVPDR-------ETMLSLLHGLADGSQLHLVSSGI 640 (729)
Q Consensus 577 -~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~ 640 (729)
+..| ...++..+...|...|++++|.++++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122 2345667777788888888888888877752 111111 12222333344566667777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 641 NKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 641 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..... .+....+|..++.+|.+.|++++|.+++++..+
T Consensus 268 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777665 345667889999999999999999999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-10 Score=112.25 Aligned_cols=217 Identities=8% Similarity=-0.011 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-------hcCCH-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 004813 424 RKAYELLGRMVVSSVVPDCATYSAFVLGKC-------KLCNY-------EDALRVFRQVSA-QSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 488 (729)
++|..+|++.+... +.+...|..+...+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34555555554432 123444444444433 34554 778888887777 3332 5667777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCChhH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLS-SS-SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV-KLQRAKD 565 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 565 (729)
+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|+++.+.. +.+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888774 343 33 67777777888888888888888887754 233444443333322 3688888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVP--DRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
|.++|++.++..+. +...|..++..+.+.|++++|..+|++.++.. +.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776443 67778888888888888888888888888752 344 356777788888888888888888888
Q ss_pred HHhC
Q 004813 643 LVSD 646 (729)
Q Consensus 643 ~~~~ 646 (729)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-11 Score=119.33 Aligned_cols=267 Identities=10% Similarity=-0.034 Sum_probs=173.1
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHHHHHH
Q 004813 66 LIRVLDNTNDLSSALKIFKWVSIQKRFQHT----ADTYCKMILKLGLAGNVEEMEGLCQNMVKE----R-YPNVREALIS 136 (729)
Q Consensus 66 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 136 (729)
....+...|+++.|+..|+.+.+.. +.+ ...+..+...+...|++++|...+++..+. + .+....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4556677888999999998887763 233 356778888888889999888888876543 1 1223567778
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC----CCc-ccHHhHHHHHHHHHhcCCC--------------------hhHHHHHHH
Q 004813 137 LVFSFVNHYRVNGAMRVLVNMNSG----GFK-LSVDVFNVVLGAIVEEKRG--------------------FADFVFVYK 191 (729)
Q Consensus 137 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~--------------------~~~a~~~~~ 191 (729)
+...+...|++++|.+.+++..+. +.. .....+..+...+... |+ ++.|...++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888888888888888887432 111 1133566666677777 77 778877777
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 192 EMVKA----GI-VPNVDTLNYLLEVLFETNRIESALDQFRRMHKK----GCC-PNSRTFEIVIKGLIANSRVDDSVSILG 261 (729)
Q Consensus 192 ~~~~~----g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (729)
+..+. +. ......+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76432 11 112345667777777888888888888776542 100 012356666777777788888877777
Q ss_pred HHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 004813 262 EMFDLGIQ-LE----LSFYTCIIPMLCRENKLEEAIRLFKMMRALD----L-MPDELTYEELINCLCENLRLDDANDILE 331 (729)
Q Consensus 262 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~~~~a~~~~~ 331 (729)
+..+.... .+ ..++..+...|...|++++|...+++..+.. - .....++..+...+...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76542110 11 3456667777777777777777777665421 0 0013355666677777777777777777
Q ss_pred HHHH
Q 004813 332 DMIV 335 (729)
Q Consensus 332 ~m~~ 335 (729)
+..+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-11 Score=125.14 Aligned_cols=215 Identities=13% Similarity=0.004 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY-EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
+++++..+++..... ..+...+..+...+...|++ ++|...|++..+.... +...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 23555666666666666776 7777777666665433 46666667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CChh
Q 004813 502 CMSKNGCSLSSSSFNILIYGLCVM---------RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL--------QRAK 564 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 564 (729)
++.+. .|+...+..+...|... |++++|++.|+++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77664 35566666666667666 77777777777776654 34456666677777666 7777
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 565 DLLVVLAQMLVEGCA--LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 565 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
+|++.|++..+..+. -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777765331 266677777777777777777777777777642 11345666677777777777777766554
Q ss_pred H
Q 004813 643 L 643 (729)
Q Consensus 643 ~ 643 (729)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=118.52 Aligned_cols=177 Identities=10% Similarity=0.097 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-------CCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 004813 130 VREALISLVFSFVNHYRVNGAMRVLVNMNSG-------GFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNV 202 (729)
Q Consensus 130 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 202 (729)
...++..+...+...|++++|..+|+++.+. ..+.....+..+...+... |++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-----
Confidence 3455556666666666666666666665431 1122233344444444444 55555555555444320
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHhH
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL------GI-QLELSFY 275 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~ 275 (729)
+............++..+...+...|++++|...++++.+. +. ......+
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000000111233444444444445555554444444432 11 1123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 276 TCIIPMLCRENKLEEAIRLFKMMRAL------DLMP-DELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
..+...+...|++++|.++|+++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666665542 1112 234566666677777777777777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-10 Score=115.34 Aligned_cols=161 Identities=9% Similarity=-0.071 Sum_probs=88.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-----HHhHH
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALD-LMP----DELTYEELINCLCENLRLDDANDILEDMIVIGL-TPT-----DDVFV 346 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~-~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-----~~~~~ 346 (729)
....+...|++++|...|++..+.- -.+ ...+|..+...|...|++++|...+++..+.-. .++ ..++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~- 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH- 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH-
Confidence 4556677888999988888876531 012 235677788888888999999888888765311 111 1122
Q ss_pred HHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC------CcccchHHHHHHHhc
Q 004813 347 DIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA------DCDSWNIPIRWLCEN 420 (729)
Q Consensus 347 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 420 (729)
..+...|...|++++|...|++..+.... ...++..+...|...
T Consensus 188 ------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 188 ------------------------------SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp ------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 45555566666666666666554432110 112444455555555
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004813 421 EEIRKAYELLGRMVV-----SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVS 469 (729)
Q Consensus 421 ~~~~~a~~~~~~~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 469 (729)
|++++|...+++... ........++..+...+.+.|++++|...+++..
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555443 1101123344444445555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-10 Score=112.48 Aligned_cols=264 Identities=11% Similarity=-0.072 Sum_probs=129.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH----hHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHH
Q 004813 417 LCENEEIRKAYELLGRMVVSSVVPDCA----TYSAFVLGKCKLCNYEDALRVFRQVSAQSL-VLD----SISYSKLVEGL 487 (729)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 487 (729)
+...|++++|...+++........+.. .+..+...+...|++++|...+.+...... ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344555555555555554432211211 233344445555666666666555443200 001 12234455555
Q ss_pred HccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHhHHHHHHH
Q 004813 488 CQVEKITEAVEVFCCMSKN----GCS--L-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY----TTSTYTKIMLG 556 (729)
Q Consensus 488 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~ 556 (729)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5666666666666655432 111 1 12334445556666666666666666655432111 12345555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALD--VEAYC----ILIQSMSEQNKLKDCALFFNVMVKAGLVP---DRETMLSLLHGL 627 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~ 627 (729)
+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 6666666666666666554311111 11111 12233556666666666666655432111 122344555666
Q ss_pred hccCChHHHHHHHHHHHhC----CCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 628 ADGSQLHLVSSGINKLVSD----SEVLDS-SMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...|++++|...+++.... +.+++. ..+..+..++...|+.++|.+.+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666666665443 111122 2455556666666777776666666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-10 Score=114.55 Aligned_cols=230 Identities=10% Similarity=-0.021 Sum_probs=173.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 004813 448 FVLGKCKLCNYEDALRVFRQVSAQSL-VL----DSISYSKLVEGLCQVEKITEAVEVFCCMSKNG--C---SL-SSSSFN 516 (729)
Q Consensus 448 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~ 516 (729)
....+...|++++|...|+...+... .+ ...++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999876411 12 24567888889999999999999999886531 1 11 245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSG----TS-YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLV-----EGCALDVEAYC 586 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 586 (729)
.+..+|...|++++|.+.|++..+.. .. ....++..+...|...|++++|++.+++..+ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 88999999999999999998887531 11 1234677888999999999999999999887 4333 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGL---VPD-RETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+...|.+.|++++|.+.+++..+... .|. ...+..+...|...++ +.+|+..+++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 899999999999999999999987411 122 3455666667778888 7777777776321 222344677899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004813 660 NGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-10 Score=101.36 Aligned_cols=165 Identities=9% Similarity=0.016 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSM 592 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 592 (729)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345555666666777777777776665543 334566666777777777777777777777665332 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 593 SEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHHH
Confidence 77888888888888777652 335667777777888888888888888887776 3556778888888888888888888
Q ss_pred HHHHHHHhC
Q 004813 673 YLLDLMLGK 681 (729)
Q Consensus 673 ~~~~~~~~~ 681 (729)
+.++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=123.90 Aligned_cols=164 Identities=11% Similarity=0.034 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
...++.|...|.+.|++++|++.|+++.+.. +-+..++..+..+|.+.|++++|++.|++.++..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4456666666666666666666666666553 233555666666666666666666666666665433 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
|...|++++|++.|++.++. .| +...|..+..+|...|++++|++.++++.+. .+.+...|..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666663 33 3556666666666667777777776666665 24455666667777777777776
Q ss_pred HHHHHHHHHh
Q 004813 671 ASYLLDLMLG 680 (729)
Q Consensus 671 A~~~~~~~~~ 680 (729)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-10 Score=104.47 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 004813 475 LDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIM 554 (729)
Q Consensus 475 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 554 (729)
.|+..+......+...|++++|...|++..+..-+++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36678888899999999999999999999886532677788789999999999999999999999875 34567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVEGCALDV-------EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD---RETMLSLL 624 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 624 (729)
..+...|++++|+..+++..+..+. +. ..|..+...+...|++++|++.|+++++ ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 9999999999999999999987543 44 4577788888999999999999999987 4565 45667777
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
.+|...| ...++++...+ ..+...|.... ....|.+++|...+++..+ +.|+......++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 7775443 44556665552 33444444333 3455778999999999998 4677665554444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=110.67 Aligned_cols=231 Identities=10% Similarity=-0.026 Sum_probs=168.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC----CC-C-CCHHHH
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSV-VPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQ----SL-V-LDSISY 480 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~ 480 (729)
.....+...|++++|...|++...... .++ ..++..+...|...|+++.|...+.+..+. +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556678899999999988765421 122 346777788889999999999998887653 11 1 124567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 004813 481 SKLVEGLCQVEKITEAVEVFCCMSKN----GCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYS-----SGTSYTTSTY 550 (729)
Q Consensus 481 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 550 (729)
+.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|.+.+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999888653 1111 234677888899999999999999998876 33 2336678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004813 551 TKIMLGLVKLQRAKDLLVVLAQMLVEG----CALDVEAYCILIQSMSEQNK---LKDCALFFNVMVKAGLVPD-RETMLS 622 (729)
Q Consensus 551 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 622 (729)
..+...+.+.|++++|...+++..+.. .......+..+...+...++ +.+|+.++++ .+..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 888999999999999999999988752 11123455666666777788 7777777765 222333 345667
Q ss_pred HHHHHhccCChHHHHHHHHHHHhC
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+...|...|++++|...+++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999999988653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=97.07 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=77.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 2234444444444445555555555554444432 2234444444455555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSG 639 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (729)
.|++++|.+.++++.+..+. +...+..+...+...|++++|.++++++.+.. ..+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444222 44445555555555555555555555555432 12344555555555555555555555
Q ss_pred HHHHHh
Q 004813 640 INKLVS 645 (729)
Q Consensus 640 ~~~~~~ 645 (729)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-09 Score=100.21 Aligned_cols=207 Identities=10% Similarity=-0.049 Sum_probs=159.8
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILI 519 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 519 (729)
.|+..+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888888999999999999999999987654677787779999999999999999999999864 34567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004813 520 YGLCVMRKVDKAIRLRSLAYSSGTSYTT-------STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD---VEAYCILI 589 (729)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 589 (729)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++.++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999999875 3344 45778888899999999999999999876 454 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+|... +..+++++...+ ..+...|.... ....+.+++|+..+++..+. .|.+..+...+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l-~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL-SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHH
Confidence 777654 444556665543 22344444433 33456789999999999987 344554544443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=118.79 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...|+.|...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|++.|+++.+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666666666666666666665542 2235556666666666666666666666666543 2335556666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 635 (729)
|...|++++|++.|++.++..+. +...|+.+..+|...|++++|++.|++.++. .|+ ...+..+..+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666665433 4556666666666666666666666666653 333 4556666666666666666
Q ss_pred HHHHHHHHHh
Q 004813 636 VSSGINKLVS 645 (729)
Q Consensus 636 A~~~~~~~~~ 645 (729)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-09 Score=104.11 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=132.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCcc-cHHhHHHH
Q 004813 102 MILKLGLAGNVEEMEGLCQNMVKERYPNVR----EALISLVFSFVNHYRVNGAMRVLVNMNSG----GFKL-SVDVFNVV 172 (729)
Q Consensus 102 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l 172 (729)
....+...|++++|...+++........+. .++..+...+...|++++|.+.+++.... +... ....+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455566666666666665554322221 14455556666667777777776666332 1110 11223444
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--ChhhHH
Q 004813 173 LGAIVEEKRGFADFVFVYKEMVKA----GIV--P-NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC--P--NSRTFE 241 (729)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~ 241 (729)
...+... |++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 100 a~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4555556 7777777777766542 111 2 2344555666777777888877777776542111 1 124556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHH
Q 004813 242 IVIKGLIANSRVDDSVSILGEMFDLGIQLEL-SFYT-----CIIPMLCRENKLEEAIRLFKMMRALDLMPD---ELTYEE 312 (729)
Q Consensus 242 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ 312 (729)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6667777778888888877777643111111 1111 233446678888888888877765432111 224556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 004813 313 LINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 313 li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
+...+...|++++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777788888888888877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=110.49 Aligned_cols=203 Identities=12% Similarity=-0.014 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKN------GC-SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------G- 542 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~- 542 (729)
..++..+...|...|++++|...++++.+. +- +....++..+...|...|++++|...++++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334455555555555555555555555432 11 112334555555666666666666665555443 1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 004813 543 TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE------GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA---- 611 (729)
Q Consensus 543 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 611 (729)
.+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|.++++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0122345566666667777777777777666553 1111 2455667777777788888888887777652
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCC------hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 612 ---GLVPD-RETMLSLLHGLADGSQ------LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 612 ---~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+. ...+..+...+...+. +..+...++..... .+....++..++..|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122 1223333333322222 22333333322221 233455788899999999999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-08 Score=92.89 Aligned_cols=178 Identities=14% Similarity=0.115 Sum_probs=94.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 496 AVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 496 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
|...|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444444555666666666666666666554432 1234455555666666666666666666665
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 575 VEGCAL-----DVEAYCILIQSM--SEQN--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 575 ~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 233334444442 2223 666666666666542 34422223333356666666666666665443
Q ss_pred CC---------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 646 DS---------EVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 646 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.. -+.++.++..+|......|+ +|.++++++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 13345555455555555565 56666666665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.8e-09 Score=99.81 Aligned_cols=129 Identities=6% Similarity=-0.065 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----
Q 004813 549 TYTKIMLGLVKL-QRAKDLLVVLAQMLVEGCAL-D----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----- 617 (729)
Q Consensus 549 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----- 617 (729)
+++.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445555566664 66666666666655431110 1 234566666677777777777777776664222111
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 004813 618 -ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS------SMYNILINGLW--KEGLTSQASYLLDLML 679 (729)
Q Consensus 618 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 679 (729)
..|..+..++...|++++|+..+++..+. .|+. ..+..++..+. ..+++++|++.|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 14555666666677777777777776654 1211 12334455553 3455677777766654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-09 Score=103.52 Aligned_cols=204 Identities=12% Similarity=0.004 Sum_probs=107.5
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------C-
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQ------SL-VLDSISYSKLVEGLCQVEKITEAVEVFCCMSKN------G- 507 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~- 507 (729)
..++..+...+...|++++|...++.+.+. +- .....++..+...|...|++++|.+.++++... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555566666666666666666665543 11 113345566666666667777776666666543 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 004813 508 CSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSS------GTSY-TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE---- 576 (729)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 576 (729)
.+....++..+...|...|++++|...++++.+. ...| ...++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0123445666666667777777777777666553 1112 2345666667777777777777777766653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 ---GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVK---A-G-LVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ---~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
...+ ....|..+...+...+....+.. +..+.. . + ..| ....+..+...|...|++++|..++++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 12223333333333222222221 111111 1 1 111 2345667777778888888888888777653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-07 Score=90.03 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE--KITEAVEVFCCMSKNGCSLSSSSFNILIYGL----CVM---RKV 528 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 528 (729)
.++|+..++.++..++. +...|+.-...+...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45788888888776554 5566777777777777 8888888888887754 44566666554444 444 678
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHH
Q 004813 529 DKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAK--DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK------LKD 600 (729)
Q Consensus 529 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 600 (729)
++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.++++++.++. |...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888765 567778888888888888888 889999999888766 88888877777777776 888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 601 CALFFNVMVKAGLVPDRETMLSLLHGLADGSQL-HLVSSGINKLVSDS--EVLDSSMYNILINGLWKEGLTSQASYLLDL 677 (729)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (729)
+++.+++++..... |...|+.+...+.+.|+. +.+.....++.+.+ .+.++..+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999988886433 677888888788777774 44556666665542 245777888999999999999999999999
Q ss_pred HHhCCCCCC
Q 004813 678 MLGKGWVPD 686 (729)
Q Consensus 678 ~~~~g~~p~ 686 (729)
+.+. +.|.
T Consensus 284 l~~~-~Dpi 291 (306)
T 3dra_A 284 LKSK-YNPI 291 (306)
T ss_dssp HHHT-TCGG
T ss_pred HHhc-cChH
Confidence 8863 3443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-09 Score=100.29 Aligned_cols=167 Identities=8% Similarity=-0.161 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CC--CHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQ----SLVL-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGC---SL--SSS 513 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~ 513 (729)
.|......|...|++++|...|.+..+. +-.+ ...+|+.+..+|.+.|++++|+..+++..+... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555555666666666666555432 1111 134555566666666666666666665544210 00 023
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----
Q 004813 514 SFNILIYGLCVM-RKVDKAIRLRSLAYSSGTSY-T----TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV----- 582 (729)
Q Consensus 514 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----- 582 (729)
+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555566654 66666666666655432100 0 234555556666666666666666666654322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 583 -EAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 583 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
..|..+..++...|++++|...|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344555555666666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-07 Score=89.07 Aligned_cols=209 Identities=10% Similarity=0.044 Sum_probs=134.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCCh
Q 004813 104 LKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGF 183 (729)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (729)
+-..-.|.+..++.-.. +............+.++|...|++... ..-.|....+..+. .+... +
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~-~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDT-K-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTT-T--
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhcc-c--
Confidence 44455677777766322 222223334555566777777776642 11123332333222 22232 2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 004813 184 ADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGC-CPNSRTFEIVIKGLIANSRVDDSVSILGE 262 (729)
Q Consensus 184 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (729)
+...|+++.+.+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777777654 45566666788888888999999999988766543 12556777788888889999999999988
Q ss_pred HHHCCCCC-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 263 MFDLGIQL-----ELSFYTCIIPML--CREN--KLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 263 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
|.+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764 34 345555566553 3334 8999999999987653 55334445555888999999999999876
Q ss_pred HH
Q 004813 334 IV 335 (729)
Q Consensus 334 ~~ 335 (729)
.+
T Consensus 238 ~~ 239 (310)
T 3mv2_B 238 LS 239 (310)
T ss_dssp HS
T ss_pred HH
Confidence 65
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=84.35 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3455666666777777777777777665433 56666667777777777777777777777643 234566677777777
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 788888888888777765 345667777788888888888888888888775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=91.25 Aligned_cols=136 Identities=10% Similarity=-0.000 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADG 630 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 630 (729)
.+..+|.+.|++++|+..|++.++..+. +...|..+..++...|++++|.+.|++.++. .| +...+..+..+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3677788888888888888888877544 6777888888888888888888888888874 34 466777777776555
Q ss_pred CC--hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 631 SQ--LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 631 g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
|+ .+.+...++.... ..|....+..+..++...|++++|.+.|++.++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 43 3444555555432 222233455566777778888888888888886 467765554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-06 Score=90.90 Aligned_cols=125 Identities=8% Similarity=-0.066 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE-QNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
..|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.- .-+...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666777899999999988 32 22344555433322222 336899999999988752 2234556667777
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 627 LADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778899999999999973 2577888888888888999999998888774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=94.68 Aligned_cols=211 Identities=7% Similarity=-0.092 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS---SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS--YTTSTY 550 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 550 (729)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+.... .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45555666666777777777777777777642 222 456666777777777777777777777765321 113445
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 551 TKIMLGLVK--------LQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLS 622 (729)
Q Consensus 551 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 622 (729)
..+..++.. .|++++|+..|+++++..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 67777777777777665322 1111111100 0000000 0012356
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCHH-
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVL---DSSMYNILINGLWKE----------GLTSQASYLLDLMLGKGWVPDAT- 688 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~- 688 (729)
+...|...|++++|+..++++.+.. +. ....+..++.+|... |++++|.+.++++.+. .|+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 6777888888888888888888762 22 244677788888766 8888999999988874 46542
Q ss_pred ---HHHHHHhhhhhcchhhhhhhc
Q 004813 689 ---THGLLVGSSVGEEIDSRRFAF 709 (729)
Q Consensus 689 ---~~~~ll~~~~~~~~~~~~~~~ 709 (729)
....+-..+...+..++...+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 233344444455555544433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-08 Score=94.74 Aligned_cols=184 Identities=9% Similarity=-0.006 Sum_probs=132.3
Q ss_pred CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHH
Q 004813 440 PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLD---SISYSKLVEGLCQVEKITEAVEVFCCMSKNGC--SLSSSS 514 (729)
Q Consensus 440 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 514 (729)
.+...+......+.+.|++++|...|+.+.+..+. + ...+..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667777788899999999999999999987443 3 67788899999999999999999999988521 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 004813 515 FNILIYGLCV--------MRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAY 585 (729)
Q Consensus 515 ~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 585 (729)
+..+..++.. .|++++|+..|+++.+.. |+. .....+. .+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 7778888888 999999999999998864 332 2222211 11111110 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcc----------CChHHHHHHHHHHHhC
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLHGLADG----------SQLHLVSSGINKLVSD 646 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 646 (729)
..+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|...++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55677788888888888888888774 233 34566667777655 7788888888888876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-07 Score=87.86 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 004813 423 IRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC--NYEDALRVFRQVSAQSLVLDSISYSKLVEGL----CQV---EKI 493 (729)
Q Consensus 423 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 493 (729)
.++|+++++.++...+. +...|+.--..+...+ ++++++..++.+....++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 45677777777665322 3445555555666666 788888888887776554 445555444444 334 678
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC------hhH
Q 004813 494 TEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVD--KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR------AKD 565 (729)
Q Consensus 494 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 565 (729)
++++++++++.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.++ +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888888764 557778877777777778777 8888888888776 4667777777777777666 888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL-KDCALFFNVMVKAG--LVPDRETMLSLLHGLADGSQLHLVSSGINK 642 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (729)
+++.+++++...+. |...|+.+...+.+.|+. +++.++..++.+.+ -..+...+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89999988888766 888888888888887774 44556777666532 123667888888889899999999999999
Q ss_pred HHhCCCCCCHHhHHHHHH
Q 004813 643 LVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~ 660 (729)
+.+.--|.....|+..++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 987423445556665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-07 Score=93.07 Aligned_cols=125 Identities=5% Similarity=-0.106 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKL-QRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
.+|...+..+.+.++.+.|..+|+++ ... ..+...|......-... ++.+.|..+|+...+.-.. +...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34555555555566677777777766 211 12233333222222222 2577777777777665222 33445556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
....|+.+.|..+|+++. -....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777777777762 1355666666655566777777776666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-08 Score=89.53 Aligned_cols=136 Identities=11% Similarity=-0.023 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.++..+. +...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 7777888888888888888887765 445677778888888888888888888888877544 66777777777765543
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 598 --LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 598 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
.+.+...+..... ..|....+.....++...|++++|+..|+++.+. .|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 3444555555432 2222223344455566678888888888888875 55655444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-08 Score=81.58 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=50.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 482 KLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 482 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33344444444444444444443321 1233333444444444444444444444443332 122333333444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
++++|.+.++++.+..+. +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444333211 23333334444444444444444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-09 Score=89.13 Aligned_cols=142 Identities=10% Similarity=-0.062 Sum_probs=75.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004813 521 GLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKD 600 (729)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 600 (729)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++..+. +...|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3344455556655555554321 112334445555666666666666666666655433 55566666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 601 CALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSG-INKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
|...|++.++. .| +...+..+...|.+.|+.++|.+. ++++.+. .|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 66666666653 23 345555566666666665544433 3555554 24445555555555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-07 Score=86.77 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----ChhHHHHHH
Q 004813 495 EAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ----RAKDLLVVL 570 (729)
Q Consensus 495 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 570 (729)
+|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555566666666666666666666666543 34445555555555 4 666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCChHHHHHHHH
Q 004813 571 AQMLVEGCALDVEAYCILIQSMSE----QNKLKDCALFFNVMVKAGLV-PDRETMLSLLHGLAD----GSQLHLVSSGIN 641 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 641 (729)
++..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45555566666655 66777777777777664321 014556666666665 667777777777
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 004813 642 KLVSDSEVLDSSMYNILINGLWKE-G-----LTSQASYLLDLMLGKG 682 (729)
Q Consensus 642 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 682 (729)
+..+. +.+...+..|...|... | ++++|.++|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77765 23445666666666543 2 7777777777777665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=111.44 Aligned_cols=173 Identities=8% Similarity=-0.062 Sum_probs=109.1
Q ss_pred hhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004813 453 CKLCNYEDALRVFRQVS--------AQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCV 524 (729)
Q Consensus 453 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (729)
...|++++|.+.+++.. +... .+...+..+...+...|++++|.+.|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 3322 245566666667777777777777777776642 3355666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|++++|++.|+++.+.. +.+...+..+..++.+.|++++ ++.|++.++.++. +...|..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776654 3345566666677777777777 7777777666443 556666677777777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 004813 605 FNVMVKAGLVPD-RETMLSLLHGLADGSQ 632 (729)
Q Consensus 605 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 632 (729)
|+++.+ +.|+ ...+..+..++...++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 776665 3444 3455556666655444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-07 Score=87.07 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--Hh
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT--ST 549 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 549 (729)
+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+....... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34455566677888899999999999888752 32 356777888888889999999988888876422111 13
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRE----------- 618 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----------- 618 (729)
+..+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+..
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 44444444432100 00 00111111222234444444444444432 12210
Q ss_pred -------HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 619 -------TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDS---SMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 619 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
....+...|.+.|++++|+..++++.+. .|.++ ..+..++.+|.+.|++++|.+.++.+...+
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1134566788999999999999999987 33333 568889999999999999999999998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=103.42 Aligned_cols=174 Identities=8% Similarity=-0.118 Sum_probs=126.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 004813 418 CENEEIRKAYELLGRMV--------VSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ 489 (729)
Q Consensus 418 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (729)
...|++++|++.+++.. +.. ..+...+..+...+...|++++|...|+.+.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888877 332 224566777777888888888888888888876544 67777888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887753 3356777788888888888888 88888887765 44566778888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNK 597 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 597 (729)
|++..+.++. +...|..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8887765322 35566666666655444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-08 Score=94.57 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCK-LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVE 498 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 498 (729)
.|++++|.+++++..+.... . +.+ .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45666677766665543111 0 111 35666666666544 334556677777777
Q ss_pred HHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHhcCChhHHHH
Q 004813 499 VFCCMSKNGC---SL--SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGT---SYT--TSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 499 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
.|.+...... .+ -..+|+.+...|...|++++|+..|++..+... .+. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766644210 01 133566677777777788877777777654311 111 3456667777777 88888888
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHH
Q 004813 569 VLAQMLVEGCAL-----DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 569 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
.|++.++..... ...++..+...|...|++++|++.|++.++. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888876641110 1456777888888899999999999888763 11111 2255666677777899999999
Q ss_pred HHHHHHhCCCCC--CH---HhHHHHHHHHHhcCChhHHHHH
Q 004813 639 GINKLVSDSEVL--DS---SMYNILINGLWKEGLTSQASYL 674 (729)
Q Consensus 639 ~~~~~~~~~~~~--~~---~~~~~l~~~~~~~g~~~~A~~~ 674 (729)
.+++.. . .+. +. .....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~-~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S-IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T-STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C-CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999888 5 121 11 2344555555 56777666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-08 Score=85.29 Aligned_cols=142 Identities=6% Similarity=-0.109 Sum_probs=86.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR 562 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 562 (729)
...+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445566677777777666543 22 23345556667777777777777777776654 3456667777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 004813 563 AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF-FNVMVKAGLVPD-RETMLSLLHGLADGS 631 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g 631 (729)
+++|+..|++.++..+. +...|..+...|.+.|++++|.+. +++.++. .|+ ...|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 77777777777766443 566677777777777777665544 4666653 343 445555555554444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-07 Score=82.94 Aligned_cols=141 Identities=14% Similarity=-0.019 Sum_probs=63.2
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHH
Q 004813 426 AYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE----KITEAVEVFC 501 (729)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 501 (729)
|++.|++..+.| +...+..+...|...+++++|...|+...+.| ++..+..|...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444332 33444444444444555555555555554432 33344444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHh----cCChhHHHHHHHH
Q 004813 502 CMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSGTS-YTTSTYTKIMLGLVK----LQRAKDLLVVLAQ 572 (729)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 572 (729)
+..+.| +...+..|...|.. .+++++|++.|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 34444444444443 44555555555555443311 013344444444444 3444455555544
Q ss_pred HHHc
Q 004813 573 MLVE 576 (729)
Q Consensus 573 ~~~~ 576 (729)
..+.
T Consensus 155 A~~~ 158 (212)
T 3rjv_A 155 SSSL 158 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=91.63 Aligned_cols=163 Identities=12% Similarity=-0.015 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCI-LIQ 590 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 590 (729)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3344445555555566666666655555543 2334455555555566666666666665554442 23222211 122
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCh
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD--SSMYNILINGLWKEGLT 668 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 668 (729)
.+...++.++|.+.+++..+.. +.+...+..+...|...|++++|+..++++.+.. +.+ ...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCC
Confidence 2444555555666666665532 1235555666666666666666666666666542 112 44566666666666766
Q ss_pred hHHHHHHHHHH
Q 004813 669 SQASYLLDLML 679 (729)
Q Consensus 669 ~~A~~~~~~~~ 679 (729)
++|...+++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.9e-08 Score=84.33 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH-HH
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA-IV 177 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 177 (729)
+......+.+.|++++|...+++..+.. |.+...+..+..++...|++++|...|+++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445556667777777777777666554 5566677777777777777777777777765432 233322221111 11
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChhHH
Q 004813 178 EEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCP-NSRTFEIVIKGLIANSRVDDS 256 (729)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 256 (729)
.. ++...+...|++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 86 ~~-~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQ-AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HH-HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hh-cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22 23334667777776653 2256677777777777888888888887777653222 244666777777777777777
Q ss_pred HHHHHHHH
Q 004813 257 VSILGEMF 264 (729)
Q Consensus 257 ~~~~~~~~ 264 (729)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-08 Score=93.49 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=157.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ-VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIR 533 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (729)
.|++++|.+++++..+.... . +.+ .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46778888888877653211 1 122 57888888888776 346778899999999
Q ss_pred HHHHHHHcCC---CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 004813 534 LRSLAYSSGT---SY--TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEG--C-ALD--VEAYCILIQSMSEQNKLKDCAL 603 (729)
Q Consensus 534 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~~~~~~A~~ 603 (729)
.|.++.+... .+ -..+|+.+...|...|++++|+..|++.++.- . .+. ..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9988765321 11 13478888899999999999999999887641 1 111 3567788888988 99999999
Q ss_pred HHHHHHHCCCC---C--CHHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 004813 604 FFNVMVKAGLV---P--DRETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD-SSMYNILINGLWKEGLTSQASY 673 (729)
Q Consensus 604 ~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 673 (729)
.|++.++.... + ...++..+...|...|++++|+..+++..+. +..+. ...+..++.++...|++++|.+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998864111 1 1457888899999999999999999998875 11111 2366778888888999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHhhhhhcchhhhh
Q 004813 674 LLDLMLGKGWVPDA------TTHGLLVGSSVGEEIDSRR 706 (729)
Q Consensus 674 ~~~~~~~~g~~p~~------~~~~~ll~~~~~~~~~~~~ 706 (729)
.|++.. . .|+. .....++.++ ..++.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 999998 3 3432 2344455555 34444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=102.27 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=109.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004813 490 VEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVV 569 (729)
Q Consensus 490 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 569 (729)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887653 3456778888888888888888888888888764 34567778888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHHHhC
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG---SQLHLVSSGINKLVSD 646 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 646 (729)
+++..+..+. +...+..+..+|...|++++|.+.+++..+.. ..+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888877543 57778888888888888888888888888752 22466777788888888 8888888888888776
Q ss_pred CCCCCHHhHHHH
Q 004813 647 SEVLDSSMYNIL 658 (729)
Q Consensus 647 ~~~~~~~~~~~l 658 (729)
+ +.+...|..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 3 3334444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-08 Score=84.73 Aligned_cols=77 Identities=10% Similarity=-0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 601 CALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 601 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
|...+++.++. .| +...+..+..++...|++++|...++++.+.... .+...+..++.++...|+.++|...|++.
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 44455555442 22 2445555555555555555555555555554211 12335555555555556555555555554
Q ss_pred H
Q 004813 679 L 679 (729)
Q Consensus 679 ~ 679 (729)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-07 Score=86.89 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHH
Q 004813 93 QHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVV 172 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (729)
+.+...+..+...+.+.|++++|...|++..+.. |.+..++..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3455667778888888999999999999888876 667888888899999999999999999888654 3444433333
Q ss_pred HH-HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhc
Q 004813 173 LG-AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCC-PNSRTFEIVIKGLIAN 250 (729)
Q Consensus 173 l~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~ 250 (729)
.. .+.+. ++.+.|...|++..+.. +.+...+..+...+...|++++|++.|+++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~-~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQ-AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHH-HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhh-cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 32 24455 77788888888888764 346778888888888899999999999888775321 1256777888888888
Q ss_pred CChhHHHHHHHHHH
Q 004813 251 SRVDDSVSILGEMF 264 (729)
Q Consensus 251 g~~~~a~~~~~~~~ 264 (729)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-06 Score=80.90 Aligned_cols=222 Identities=10% Similarity=-0.015 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVM-R-KVDKAIRL 534 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 534 (729)
.++|+++++.++..++. +..+|+.-...+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34566666666665444 5555665555555556 4777777777777653 44566666666555555 5 66777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKLQRAK--------DLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK-------LK 599 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------~~ 599 (729)
++.+.+.. +.|..+|+.-...+.+.|.++ ++++.++++++..+. |...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 77777654 445666666555555555555 777888888777655 77777777777766665 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh--------------------HHHHHHHHHHHhCC-----CCCCHHh
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL--------------------HLVSSGINKLVSDS-----EVLDSSM 654 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~ 654 (729)
++++++++++..... |...|+.+-..+.+.|+. ....+....+.... ..+.+..
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 788888887775322 566666655555555443 22333333332221 1356678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004813 655 YNILINGLWKEGLTSQASYLLDLMLGKGWVP 685 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 685 (729)
+..|++.|...|+.++|.++++.+.+. +.|
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dp 334 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQ 334 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hCh
Confidence 888999999999999999999998754 444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=99.79 Aligned_cols=154 Identities=10% Similarity=-0.075 Sum_probs=120.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 455 LCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRL 534 (729)
Q Consensus 455 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 534 (729)
.|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876544 67889999999999999999999999999864 44678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ---NKLKDCALFFNVMVKA 611 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 611 (729)
+++..+.. +.+...+..+..++...|++++|.+.|++..+..+. +...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999875 456788999999999999999999999999988554 678888999999999 9999999999999986
Q ss_pred C
Q 004813 612 G 612 (729)
Q Consensus 612 ~ 612 (729)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-07 Score=82.12 Aligned_cols=182 Identities=7% Similarity=-0.049 Sum_probs=123.7
Q ss_pred CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HH
Q 004813 441 DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLV-L-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS----SS 514 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 514 (729)
+...+..+...+.+.|++++|...|+.+.+..+. + ....+..+..+|.+.|++++|...|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566677889999999999999999976433 1 24577788999999999999999999998853 432 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 515 FNILIYGLCV------------------MRKVDKAIRLRSLAYSSGTSYTT-STYTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 515 ~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+..+..++.. .|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH--
Confidence 4555555554 355666666666666542 222 111111100 0000000
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 576 EGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDR----ETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
......+...|.+.|++++|+..|+++++. .|+. ..+..+..+|.+.|+.++|.+.++.+...
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011124567788999999999999999985 3442 46778889999999999999999998887
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-06 Score=81.65 Aligned_cols=162 Identities=11% Similarity=-0.007 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 004813 519 IYGLCVMRKVDKAIRLRSLAYSSGT-SYTTS----TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCIL 588 (729)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 588 (729)
+..+...|++++|..++++..+... .++.. .+..+...+...+++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777788888888777765421 12211 2233555566667888888888888774221 22 3367788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCCC-HHhHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKA-----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVLD-SSMYNI 657 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 657 (729)
...|...|++++|..+|+++++. +..+. ..++..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888888888742 11112 236778888888899999999888887654 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHh
Q 004813 658 LINGLWKEGL-TSQASYLLDLMLG 680 (729)
Q Consensus 658 l~~~~~~~g~-~~~A~~~~~~~~~ 680 (729)
++.+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999994 6999999888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.1e-06 Score=79.63 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV-E-KITEAVE 498 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 498 (729)
..++|+++++.++...+. +...|+.--..+...+ .+++++.+++.+....++ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345677777776665422 4444555555555556 477777777777776555 666666665555554 5 6677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------h
Q 004813 499 VFCCMSKNGCSLSSSSFNILIYGLCVMRKVD--------KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR-------A 563 (729)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 563 (729)
+++++.+.. +.+...|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 777777653 446666666555555555444 7777777777765 4566677777766666665 5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL--------------------KDCALFFNVMVKAG-----LVPDRE 618 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~-----~~p~~~ 618 (729)
+++++.+++++...+. |...|+.+-..+.+.|+. .+..++..++...+ -.+...
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 7788888887777655 777777766666655543 22333333332221 135677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
.+..++..|...|+.++|.++++.+.+.--+....-|+..++
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 778888899999999999999999886633444455655444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-07 Score=75.02 Aligned_cols=105 Identities=10% Similarity=-0.098 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++. .+.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHHHHHHHH
Confidence 345556667777777777777777777642 224667777777777777777777777777776 355667777777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 663 WKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
...|++++|.+.|++.++ +.|+.....
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~ 118 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAR 118 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHH
Confidence 888888888888887776 356654433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=80.25 Aligned_cols=92 Identities=8% Similarity=-0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|++.|++..+..+. +...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444555556666666666655542 345555555666666666666666666665554322 45555555556666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004813 595 QNKLKDCALFFNVMVKA 611 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~ 611 (729)
.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 66666666666665553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.8e-06 Score=79.89 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHHH
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTT-----STYTKIMLGLVKLQRAKDLLVVLAQMLVEGC---ALD--VEAY 585 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~ 585 (729)
...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+... .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33445556666666666666665554321110 1223344555667777788777777765311 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHhCC----CCC-CHHh
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKA-GLVPD-----RETMLSLLHGLADGSQLHLVSSGINKLVSDS----EVL-DSSM 654 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~ 654 (729)
+.+...|...|++++|..+|+++.+. ...|+ ..++..+...|...|++++|+..+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77788888888888888888877632 01122 1477778888888888888888888776541 111 1567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 004813 655 YNILINGLWKEGLTSQA-SYLLDLMLG 680 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 680 (729)
|..++.+|.+.|++++| ...+++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888899999999988 777777653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=78.03 Aligned_cols=163 Identities=9% Similarity=-0.089 Sum_probs=120.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHH
Q 004813 483 LVEGLCQVEKITEAVEVFCCMSKNGC-SLSS----SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-YT----TSTYTK 552 (729)
Q Consensus 483 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 552 (729)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999999877421 1221 12334666677778999999999998874322 22 236888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVE-----GCALD-VEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETML 621 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~ 621 (729)
+...|...|++++|+..|+++++. +..+. ..+|..+...|.+.|++++|.+++++.++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999998852 11112 236788889999999999999999988753 22223 56888
Q ss_pred HHHHHHhccCC-hHHHHHHHHHHHh
Q 004813 622 SLLHGLADGSQ-LHLVSSGINKLVS 645 (729)
Q Consensus 622 ~l~~~~~~~g~-~~~A~~~~~~~~~ 645 (729)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999994 6999999888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-06 Score=76.59 Aligned_cols=126 Identities=7% Similarity=-0.006 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...|++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555666666666666666553 3456666666666666666666666666666554 3445566666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALD---------------VEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|++++|++.|++..+...... ...+..+..+|...|++++|.+.|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666432211 13444455555555555555555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=75.17 Aligned_cols=128 Identities=6% Similarity=-0.143 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4555666677777777777777777766433 56677777777777888888888888777642 224667777777888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHHHH
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNI--LINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
..|++++|...++++.+. .+.+...+.. ++..+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888887776 3445555533 3334677788888888887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-07 Score=79.90 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=87.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCh--HH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG-LADGSQL--HL 635 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 635 (729)
..|++++|...+++..+..+. +...|..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456677777777777666433 56677777777777777777777777777642 1245566666666 6677777 78
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 636 VSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 636 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
|...++++.+. .+.+...|..++..|...|++++|.+.++++.+. .|+......++...
T Consensus 100 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 88888777776 3455677777788888888888888888887764 34443333444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-06 Score=73.94 Aligned_cols=103 Identities=8% Similarity=0.032 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+.+.|++++|...|+++++.. +-+...|..+..+|...|++++|+..|+++.+. .|.++..|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence 4466677778888889999999988888753 225778888888888889999999999888887 45677888888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 662 LWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
|...|++++|.+.|++..+. .||..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999888874 46654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-06 Score=71.29 Aligned_cols=95 Identities=3% Similarity=-0.102 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
+......|.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444455555555555555555444322 44445555555555555555555555555431 1124445555555555
Q ss_pred cCChHHHHHHHHHHHhC
Q 004813 630 GSQLHLVSSGINKLVSD 646 (729)
Q Consensus 630 ~g~~~~A~~~~~~~~~~ 646 (729)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-05 Score=77.78 Aligned_cols=168 Identities=9% Similarity=-0.077 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--H
Q 004813 478 ISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS-----SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS---YT--T 547 (729)
Q Consensus 478 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~ 547 (729)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788899999999999888775322111 22344556677888999999999998764321 11 3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLV---EGCA-L--DVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-D 616 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~ 616 (729)
.+++.+...|...|++++|+..|++..+ .... + ...++..+...|...|++++|.+++++.++. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 2111 1 1257888999999999999999999988763 1111 1
Q ss_pred HHHHHHHHHHHhccCChHHH-HHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLV-SSGINKLVS 645 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 645 (729)
..+|..+..+|.+.|+.++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777877664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-05 Score=73.58 Aligned_cols=189 Identities=7% Similarity=-0.010 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-hhHHHHH
Q 004813 493 ITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR--KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR-AKDLLVV 569 (729)
Q Consensus 493 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 569 (729)
+++++.+++.+.... +-+..+|+.-...+...+ .+++++.+++.+.+.. +.|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 466677777766643 446666766666666666 3677777777777665 4566666666666666666 4777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----
Q 004813 570 LAQMLVEGCALDVEAYCILIQSMSEQ--------------NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG----- 630 (729)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 630 (729)
++++++..+. |...|+.....+... +.++++++++.+.+.... -|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 7777776655 666676665555444 346777777777776422 2455565544444443
Q ss_pred ------CChHHHHHHHHHHHhCCCCCCH-HhHHHHHH---HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 631 ------SQLHLVSSGINKLVSDSEVLDS-SMYNILIN---GLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 631 ------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
+.++++++.++++.+. .||. -++.+++. .....|..+++..+++++.+ +.|.-..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 3467888888888875 3333 22222221 11235677788888888876 4554433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-06 Score=73.01 Aligned_cols=126 Identities=7% Similarity=-0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234445555555555555555555555554443 2334444445555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLVEGCALDVEAYCI--LIQSMSEQNKLKDCALFFNVM 608 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~ 608 (729)
.|++++|.+.|++..+..+. +...+.. .+..+...|++++|.+.+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555544222 2223322 222234445555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-07 Score=81.12 Aligned_cols=132 Identities=8% Similarity=-0.116 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE----GCA-LDVEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP--DR 617 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p--~~ 617 (729)
++..+...+...|++++|...+++.... +.. .....+..+...+...|++++|.+.+++..+. +-.| ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 3444444444444444444444444331 001 11233444555555555555555555554432 1011 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..+..+...+...|++++|...+++..+. +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23445555555666666666666555432 100 0112345666667777777777766666553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-07 Score=87.17 Aligned_cols=191 Identities=9% Similarity=-0.020 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 004813 476 DSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIML 555 (729)
Q Consensus 476 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 555 (729)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666777777777777777776642 3356666777777777777777777777776654 344566667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCA----LDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS 631 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (729)
++...|++++|+..|++..+.++. .....+..+ ... ++.. +..........+......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~------~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIA------KKKR-WNSIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHH------HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHH------HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 777777777777777776654211 011111111 111 1111 122222223334433333322 2 257
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE-GLTSQASYLLDLMLG 680 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 680 (729)
+.++|++.+++..+. .+.+......+...+.+. +.+++|.++|+++.+
T Consensus 150 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEG-HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTT-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 778888888777765 233344445555555555 667788888877664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-06 Score=71.70 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+..+. +...|..+..+|..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 3334444444444444444444444432 223334444444444444444444444444443322 33344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004813 595 QNKLKDCALFFNVMVK 610 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~ 610 (729)
.|++++|...|++.++
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=77.91 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|+..++++.+. .+.++..|..++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHH
Confidence 3344555556666666666666666666532 124555666666666666666666666666665 24455666666667
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 004813 662 LWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~ 680 (729)
|...|++++|.+.|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.4e-06 Score=67.82 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLDLM 678 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~ 678 (729)
+..++..+...|++++|.++++++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-06 Score=70.26 Aligned_cols=95 Identities=4% Similarity=-0.117 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++.+.. ..+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444444433221 33444444444444444444444444444421 112334444444444
Q ss_pred ccCChHHHHHHHHHHHh
Q 004813 629 DGSQLHLVSSGINKLVS 645 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (729)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.7e-07 Score=77.97 Aligned_cols=120 Identities=7% Similarity=0.041 Sum_probs=71.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcCCh--hH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG-LVKLQRA--KD 565 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 565 (729)
..|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3556666666666665542 3355666666666666677777776666666543 2345555556666 5566666 77
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKA 611 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 611 (729)
|...+++..+..+. +...+..+...|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777766665433 4556666666666777777777777776663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-06 Score=68.93 Aligned_cols=116 Identities=7% Similarity=-0.085 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3334444444445555555555544443221 34444444445555555555555555544431 112344444444555
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 629 DGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
..|++++|...+++..+. .+.+...+..+..++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 555555555555554443 22344444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00011 Score=70.53 Aligned_cols=198 Identities=8% Similarity=0.006 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004813 458 YEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE--KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK-VDKAIRL 534 (729)
Q Consensus 458 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 534 (729)
++++..+++.+....++ +..+|+.-.-.+.+.| .+++++.+++++.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554443 5555555444444444 3566666666665543 3455555555555555555 3566666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc--------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 004813 535 RSLAYSSGTSYTTSTYTKIMLGLVKL--------------QRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ----- 595 (729)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 595 (729)
++.+.+.. +-|...|+.....+.+. +.++++++.+++.+...+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 66666554 34455555544444433 3466777777777776555 667776555444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 596 ------NKLKDCALFFNVMVKAGLVPDR-ETMLSLL---HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 596 ------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
+.++++++.++++.+ ..||. ..+..++ .+....|..+++...+.++++. -|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-DPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH-CGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh-CcchhhHHHHHHHHH
Confidence 457888888888887 45553 2222222 1223467778888999999886 233444555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.3e-06 Score=67.00 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333334444444444444444443321 1223333333444444444444444444433322 1223333333333334
Q ss_pred cCChhHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQML 574 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~ 574 (729)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.8e-06 Score=77.54 Aligned_cols=189 Identities=10% Similarity=-0.081 Sum_probs=116.2
Q ss_pred cCCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHc------------CC-----
Q 004813 72 NTNDLSSALKIFKWVSIQKRFQHTADTYCKM-------ILKLGLAGNVEEMEGLCQNMVKE------------RY----- 127 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~----- 127 (729)
..+++..|++.|..+.... +.....|..+ ..++.+.++..++...+..-.+. |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999998875 5667788777 56666666666666666655442 10
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--H
Q 004813 128 ---PNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN--V 202 (729)
Q Consensus 128 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 202 (729)
.............+...|++++|.++|+.+...+ |+......+-..+.+. +++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccHH
Confidence 0113455556677777778888888777776543 3322333334455556 77777777776544321 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004813 203 DTLNYLLEVLFETNRIESALDQFRRMHKKGCCPN--SRTFEIVIKGLIANSRVDDSVSILGEMFDL 266 (729)
Q Consensus 203 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 266 (729)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556666677777777777777777664322133 223444455566667777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-05 Score=74.28 Aligned_cols=188 Identities=11% Similarity=-0.022 Sum_probs=133.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCccc---------------
Q 004813 108 LAGNVEEMEGLCQNMVKERYPNVREALISL-------VFSFVNHYRVNGAMRVLVNMNSGGFKLS--------------- 165 (729)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 165 (729)
..++...|.+.|.++.+.+ |.....|..+ ..++.+.++..++...+.+..+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5789999999999999887 6778888888 67777777777777777766542 221
Q ss_pred -------HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 004813 166 -------VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPN-- 236 (729)
Q Consensus 166 -------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-- 236 (729)
......+...+... |++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQ-GNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 12233455666677 89999999998887653 333355666667888899999999987554421 111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004813 237 SRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLE--LSFYTCIIPMLCRENKLEEAIRLFKMMRALD 302 (729)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 302 (729)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23566677788888888888888888875332143 3345566677778888888888888887754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.8e-06 Score=82.82 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4566667777777777777777777777642 224666777777777777777777777777776 34566677777777
Q ss_pred HHhcCChhHH-HHHHHHHH
Q 004813 662 LWKEGLTSQA-SYLLDLML 679 (729)
Q Consensus 662 ~~~~g~~~~A-~~~~~~~~ 679 (729)
+.+.|++++| ..+++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777 44555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-06 Score=67.65 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVK 559 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 559 (729)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 1233333444444444444444444444443332 1223333333344444
Q ss_pred cCChhHHHHHHHHHHH
Q 004813 560 LQRAKDLLVVLAQMLV 575 (729)
Q Consensus 560 ~~~~~~A~~~~~~~~~ 575 (729)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.1e-06 Score=76.60 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMS 504 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 504 (729)
...+..+...+...|++++|...+++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3344444444444555555555444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-06 Score=68.87 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..|..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+. .+.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 345556666677777777777777777642 224566777777777777777777777777766 345566777777777
Q ss_pred HhcCChhHHHHHHHHHHh
Q 004813 663 WKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~ 680 (729)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=82.95 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHH
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGA 175 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (729)
...+..+...+.+.|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555555443 3344555555555555555555555555554432 2233344444444
Q ss_pred HHhcCCChhHHHHHHHHHH
Q 004813 176 IVEEKRGFADFVFVYKEMV 194 (729)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~ 194 (729)
+... |++++|...|++..
T Consensus 82 ~~~~-g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEM-ESYDEAIANLQRAY 99 (281)
T ss_dssp HHHT-TCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHH
Confidence 4444 55555555554444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.4e-06 Score=67.97 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 33344444444444444444444444321 1233334444444444444444444444443332 122333333344444
Q ss_pred hcCChhHHHHHHHHHHH
Q 004813 559 KLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~ 575 (729)
..|++++|.+.|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.5e-06 Score=72.43 Aligned_cols=95 Identities=5% Similarity=-0.054 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (729)
.+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++.....+. +...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33444444445555555555555544433 233444444444455555555555555554444322 3344444444555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004813 594 EQNKLKDCALFFNVMVK 610 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~ 610 (729)
..|++++|.+.|++.++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=9.9e-06 Score=79.79 Aligned_cols=121 Identities=10% Similarity=-0.114 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----------------SSSFNILIYGLCVMRKVDKAIRLRSLAYS 540 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (729)
...+..+...|.+.|++++|...|++..... |+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666666666666666666665542 22 24455555555555555555555555555
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 541 SGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 541 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
.. +.+...+..+..+|...|++++|+..|++.++..+. +...+..+..++...|++++|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 43 234445555555555555555555555555554332 344455555555555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.4e-07 Score=80.08 Aligned_cols=128 Identities=9% Similarity=-0.054 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD---------------VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLV 614 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 614 (729)
+..+...+...|++++|+..|++.++....-. ...|..+..+|...|++++|+..+++.++.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 33444445555555555555555554321100 2455556666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH-HHHHHHH
Q 004813 615 PDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS-YLLDLML 679 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 679 (729)
.+...+..+..+|...|++++|...|++..+. .+.+...+..+..++...|+.+++. ..+..|.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24555666666666666666666666666655 2445556666666666666555554 3444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-06 Score=67.80 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCC----HHhHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDS--EVLD----SSMYN 656 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 656 (729)
.+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++.++.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4445566666666666666666666653 22 35556666666666666666666666665531 0111 13566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHG 691 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 691 (729)
.++.++...|++++|++.|++.+.. .||.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6777777788888888888877763 46654443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-05 Score=65.20 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++..+. +...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 333444444444444444444444432 223344444444444444444444444444443322 334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 004813 596 NKLKDCALFFNVMVK 610 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~ 610 (729)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=65.82 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHHH
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC--ALD----VEAYCILI 589 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~----~~~~~~l~ 589 (729)
..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.+++.++..+ .++ ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444444444444444444444432 22333444444444444444444444444433211 001 12333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.++...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-06 Score=70.33 Aligned_cols=94 Identities=10% Similarity=-0.093 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+..+...+...|++++|...|++++..+ +.+...|..+..+|...|++++|+..++++.+. .+.++..|..++.+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 3344445555555555555555555432 113445555555555555555555555555554 23444555555566666
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|.+.|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=64.08 Aligned_cols=98 Identities=10% Similarity=-0.092 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 3445555666666677777777776666532 224556666666666777777777777776665 34456667777777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 004813 662 LWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~ 681 (729)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.3e-05 Score=62.24 Aligned_cols=96 Identities=5% Similarity=-0.118 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555554322 44555555555555566666666665555532 113445555555566
Q ss_pred ccCChHHHHHHHHHHHhC
Q 004813 629 DGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~ 646 (729)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=77.57 Aligned_cols=96 Identities=11% Similarity=-0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLS----------------SSSFNILIYGLCVMRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 542 (729)
.+..+...+...|++++|...|++..... +.+ ...+..+..+|...|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555555431 011 1334444444444444444444444444432
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 543 TSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 543 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223334444444444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=66.81 Aligned_cols=102 Identities=11% Similarity=-0.059 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYN 656 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 656 (729)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|+..+++..+. .+.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHH
Confidence 4566666777777777777777777777763 455 456667777777777888888777777765 344666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.++.+|...|++++|.+.+++..+. .|+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~ 132 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKN 132 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 7778888888888888888877763 4544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-05 Score=68.60 Aligned_cols=95 Identities=4% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLW 663 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 663 (729)
.|..+...+...|++++|++.|++.++.. .-+...|..+..+|...|++++|+..+++..+. .+.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34444444455555555555555554431 113444445555555555555555555555544 2334445555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 004813 664 KEGLTSQASYLLDLMLG 680 (729)
Q Consensus 664 ~~g~~~~A~~~~~~~~~ 680 (729)
..|++++|.+.|++.++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=65.94 Aligned_cols=108 Identities=7% Similarity=-0.024 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-------HHhHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-------SSMYN 656 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 656 (729)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 44455555556666666666666655532 2244555555666666666666666666655541 111 45666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVG 695 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 695 (729)
.++..|...|++++|.+.++++.+. .|+...+..+-.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6777777777777777777776663 345444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=66.99 Aligned_cols=96 Identities=6% Similarity=-0.051 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLA 628 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (729)
.+..+...+.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|++.++... -+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3444455556666666666666666655433 555566666666666666666666666665421 13445555666666
Q ss_pred ccCChHHHHHHHHHHHhC
Q 004813 629 DGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~ 646 (729)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-05 Score=78.19 Aligned_cols=198 Identities=12% Similarity=-0.011 Sum_probs=100.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC
Q 004813 449 VLGKCKLCNYEDALRVFRQVSAQSLVLD----------------SISYSKLVEGLCQVEKITEAVEVFCCMSKNGC-SLS 511 (729)
Q Consensus 449 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 511 (729)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+++..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445667777777777777776533211 11345566666677777777776666544210 111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CC--
Q 004813 512 S----SSFNILIYGLCVMRKVDKAIRLRSLAYSS----GTSYT-TSTYTKIMLGLVKLQRAKDLLVVLAQMLVE--GC-- 578 (729)
Q Consensus 512 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-- 578 (729)
. .+.+.+...+...|+.+.|..+++..... +..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222223333456666666666555431 11111 334555566666666666666666655442 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 579 AL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKA--GLV-P-D--RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 579 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+ ....+..++..|...|++++|..++++.... ... | . ...+..+...+...|++++|...+.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1234555556666666666666666655432 111 1 1 123344444555556666666655555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-05 Score=66.93 Aligned_cols=96 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSM 592 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 592 (729)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++..+. +...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555443 234445555555555555555555555555554332 455555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004813 593 SEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~ 610 (729)
...|++++|.+.|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 555666666655555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=65.23 Aligned_cols=92 Identities=21% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..+++..+. .+.+...|..++.+|..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 34455666677777777777777664 23 4566666677777777777777777777765 34456677777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 004813 665 EGLTSQASYLLDLMLG 680 (729)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (729)
.|++++|.+.+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-05 Score=64.58 Aligned_cols=98 Identities=6% Similarity=-0.143 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILIN 660 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 660 (729)
+...|..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+. .+.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHH
Confidence 45566666666666677777777776666642 123556666666667777777777777776665 2445666777777
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 004813 661 GLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~ 680 (729)
+|...|++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777776664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=64.70 Aligned_cols=98 Identities=4% Similarity=-0.106 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHG 626 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (729)
...+..+...+...|++++|...|++.+...+. +...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444555555555555555555555544322 34455555555555555555555555555432 1134455555555
Q ss_pred HhccCChHHHHHHHHHHHhC
Q 004813 627 LADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~ 646 (729)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-05 Score=61.43 Aligned_cols=91 Identities=8% Similarity=-0.054 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhc
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL--DSSMYNILINGLWKE 665 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 665 (729)
+...+...|++++|...+++..+.. ..+...+..+..++...|++++|.+.+++..+. .+. +...|..++..+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHHHHH
Confidence 3334444444444444444444321 112334444444444444444444444444443 122 344444444455555
Q ss_pred -CChhHHHHHHHHHHh
Q 004813 666 -GLTSQASYLLDLMLG 680 (729)
Q Consensus 666 -g~~~~A~~~~~~~~~ 680 (729)
|++++|.+.+++...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 555555555544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=70.31 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LVPD----RET 619 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~ 619 (729)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. -.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444432000 01 1345555666666667777766666655420 0011 335
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSD----SEV-LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+...+...|++++|.+.+++..+. +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666777777777777777766543 111 1134677788888888888888888888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-05 Score=64.52 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+..+..++...|++++|.+.|+++.+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=63.10 Aligned_cols=99 Identities=3% Similarity=-0.022 Sum_probs=86.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 004813 546 TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP--DRETMLSL 623 (729)
Q Consensus 546 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l 623 (729)
+...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|.+.+++..+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4567778888999999999999999999987544 67888899999999999999999999999852 22 47888999
Q ss_pred HHHHhcc-CChHHHHHHHHHHHhC
Q 004813 624 LHGLADG-SQLHLVSSGINKLVSD 646 (729)
Q Consensus 624 ~~~~~~~-g~~~~A~~~~~~~~~~ 646 (729)
..++... |++++|.+.+++..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999999987
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00015 Score=74.44 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCC-Cccc---HHhHHHHHHHHHhcCCChhHHHHHHHHHHH----CCCCCC-HH
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGG-FKLS---VDVFNVVLGAIVEEKRGFADFVFVYKEMVK----AGIVPN-VD 203 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~g~~~~-~~ 203 (729)
++..++..|...|++++|.+.+..+...- ..++ .......+..+....|+++.+..++++... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 45677788888888888888887774321 0111 112233333333333777777777776653 222222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CC-C--H
Q 004813 204 TLNYLLEVLFETNRIESALDQFRRMHKK--GCC--P-NSRTFEIVIKGLIANSRVDDSVSILGEMFDL--GI-QL-E--L 272 (729)
Q Consensus 204 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~ 272 (729)
++..+...|...|++++|..++++.... +.. + ....+..+++.|...|++++|..+++..... .. .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6667777777788888888877776542 111 1 1235556666666677777777666665431 11 11 1 1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 273 SFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444455555666655555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=8e-05 Score=62.95 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSL 623 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (729)
..+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|.+.+++..+.. ..+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444455555555555544443 222 3444444555555555555555555554431 1134444455
Q ss_pred HHHHhccCChHHHHHHHHHHHhC
Q 004813 624 LHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
..+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-05 Score=62.62 Aligned_cols=86 Identities=7% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 333444444444444443332 123333333334444444444444444444333222 233333344444444444444
Q ss_pred HHHHHHHH
Q 004813 602 ALFFNVMV 609 (729)
Q Consensus 602 ~~~~~~~~ 609 (729)
+..+++.+
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=66.76 Aligned_cols=111 Identities=11% Similarity=-0.035 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA-------GL---------VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+......+.+.|++++|+..|.+.++. .- .| +...|..+..+|.+.|++++|+..++++.+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555555542 00 11 2356777888888899999999999888887
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhh
Q 004813 647 SEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT-THGLLVGSS 697 (729)
Q Consensus 647 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~ 697 (729)
.+.+...|..++.+|...|++++|.+.|++.++ +.|+.. .....+..+
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIV 141 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 466778888899999999999999999998887 457765 544444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-05 Score=62.63 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---HHhHHHHHH
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPD-R---ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD---SSMYNILIN 660 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 660 (729)
+...+...|++++|...|+++.+.. |+ . ..+..+..++...|++++|...++++.+. .+.+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHHH
Confidence 3444555666666666666665531 22 1 34555555666666666666666666654 2223 445666666
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004813 661 GLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~ 681 (729)
++...|++++|.+.|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00024 Score=74.89 Aligned_cols=174 Identities=9% Similarity=-0.050 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRK----------VDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 492 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
..++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +.+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777776653 3345556555555555555 677777777777654 456667777777777777
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------
Q 004813 562 --RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN-KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG-------- 630 (729)
Q Consensus 562 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 630 (729)
+++++++.++++.+.++. +...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 557777777777777655 6777777666666777 677777777777765433 556666655554432
Q ss_pred ------CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 631 ------SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQ 670 (729)
Q Consensus 631 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 670 (729)
+.++++++.+++++.. .|.|...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 4467777888777776 35677778777777777666443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=81.57 Aligned_cols=117 Identities=6% Similarity=-0.131 Sum_probs=58.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLV 636 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (729)
+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++.++.. +-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555554322 35555555555555556666665555555532 11344555555555556666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 004813 637 SSGINKLVSDSEVLDSSMYNILING--LWKEGLTSQASYLLD 676 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 676 (729)
++.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555554 22333444444444 555566666666555
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=59.47 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVEGCALDV---EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD----RETMLSLLH 625 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 625 (729)
+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...|+++.+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 334445555555555555555554222 11 344445555555556666665555555531 22 344455555
Q ss_pred HHhccCChHHHHHHHHHHHhC
Q 004813 626 GLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666655554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-05 Score=65.97 Aligned_cols=97 Identities=8% Similarity=-0.036 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGC-ALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKA----GLVP-DRE 618 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~ 618 (729)
++..+...+...|++++|.+.+++..+... ..+ ...+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444445555555555555554443200 001 234445555666666666666666655532 1111 123
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566666667777777777766554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-05 Score=78.53 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=80.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCh
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRA 563 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 563 (729)
...+.+.|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++.++++.+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344566778888888888877753 3356777777888888888888888888877764 34566777777778888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004813 564 KDLLVVLAQMLVEGCALDVEAYCILIQS--MSEQNKLKDCALFFN 606 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~ 606 (729)
++|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877776433 33344444444 667777778877776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=65.43 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 595 QNKLKDCALFFNVMVKAGL-VP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 595 ~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..++++.+. .+.+...+..++.+|...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4677777777777776421 12 2455666777777777777777777777776 3556677777777778888888888
Q ss_pred HHHHHHHhC
Q 004813 673 YLLDLMLGK 681 (729)
Q Consensus 673 ~~~~~~~~~ 681 (729)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=75.97 Aligned_cols=96 Identities=5% Similarity=-0.028 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 582 VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+. .+.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 4566666777777777777777777777642 124566667777777777777777777777765 34455667777777
Q ss_pred HHhcCChhHHHH-HHHHHH
Q 004813 662 LWKEGLTSQASY-LLDLML 679 (729)
Q Consensus 662 ~~~~g~~~~A~~-~~~~~~ 679 (729)
+.+.|++++|.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766543 344444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0001 Score=61.67 Aligned_cols=90 Identities=10% Similarity=-0.045 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhccCChHHHHHHHHHHHhC-------C
Q 004813 588 LIQSMSEQNKLKDCALFFNVMVKAGLVPD-------------RETMLSLLHGLADGSQLHLVSSGINKLVSD-------S 647 (729)
Q Consensus 588 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 647 (729)
....+.+.|++++|++.|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555542 222 125566666666666666666666666653 2
Q ss_pred CCCCHHhH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 648 EVLDSSMY----NILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 648 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+.+...| .....++...|++++|++.|++.++
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2344566 7778888888888888888887764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.89 E-value=9.3e-05 Score=73.64 Aligned_cols=87 Identities=6% Similarity=-0.058 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..|..+..+|.+.|++++|++.+++.++.. .-+...+..+..+|...|++++|++.++++.+. .+.+...+..+..++
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 444555555555555555555555555431 113444555555555555555555555555554 233444455555555
Q ss_pred HhcCChhHH
Q 004813 663 WKEGLTSQA 671 (729)
Q Consensus 663 ~~~g~~~~A 671 (729)
...++.+++
T Consensus 352 ~~~~~~~~a 360 (370)
T 1ihg_A 352 QKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=62.55 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4444445555555555555555555544322 444455555555555555555555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00072 Score=71.30 Aligned_cols=174 Identities=10% Similarity=-0.092 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR----------AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
...++|++.++++.... +-+..+|+.--.++.+.|+ ++++++.++++.+..++ +..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999999875 4556778877777777777 89999999999998777 888999888888899
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-------
Q 004813 596 N--KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS-QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKE------- 665 (729)
Q Consensus 596 ~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 665 (729)
+ ++++++++++++.+.... +...|+.-..++.+.| .++++++.++++++. .+.+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999997544 6788888888888888 899999999999998 477889999988888774
Q ss_pred -------CChhHHHHHHHHHHhCCCCCCH-HHHHHHHhhhhhcchhhh
Q 004813 666 -------GLTSQASYLLDLMLGKGWVPDA-TTHGLLVGSSVGEEIDSR 705 (729)
Q Consensus 666 -------g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 705 (729)
+.+++|++.++++... .|+. ..|.-+-..+.+.+..+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5679999999999874 4644 456555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=62.00 Aligned_cols=61 Identities=8% Similarity=0.008 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+..+..+|...|++++|+..|++.++..+. +...+..+..++...|++++|.+.+++.++
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444322 344444444444444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=73.33 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004813 547 TSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLH 625 (729)
Q Consensus 547 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 625 (729)
...|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|+..|+++++. .|+ ...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 356677777778888888888888888776544 6777777788888888888888888888764 343 446666777
Q ss_pred HHhccCChHHHHH-HHHHHHh
Q 004813 626 GLADGSQLHLVSS-GINKLVS 645 (729)
Q Consensus 626 ~~~~~g~~~~A~~-~~~~~~~ 645 (729)
++.+.++.+++.+ .+++|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766553 3444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.82 E-value=6e-05 Score=74.18 Aligned_cols=148 Identities=8% Similarity=0.025 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004813 512 SSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQS 591 (729)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 591 (729)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556667777777888888888888777642 33221 112223333322211 1366777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChhH
Q 004813 592 MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL-WKEGLTSQ 670 (729)
Q Consensus 592 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 670 (729)
|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|+..|+++.+. .+.+...+..+.... ...+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888742 225677888888888888888888888888776 244555666666553 34466777
Q ss_pred HHHHHHHHHh
Q 004813 671 ASYLLDLMLG 680 (729)
Q Consensus 671 A~~~~~~~~~ 680 (729)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7788888775
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00053 Score=56.98 Aligned_cols=110 Identities=11% Similarity=-0.062 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVS 637 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 637 (729)
++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666655 22322 4455555556666666666666643 44555566666655 56777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 004813 638 SGINKLVSDSEVLDSSMYNILINGLWK----EGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 682 (729)
+.|++..+.| ++..+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776654 55666667777776 677777777777777665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00024 Score=70.63 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004813 480 YSKLVEGLCQVEKITEAVEVFCCMSKNG--------------C-SLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS 544 (729)
Q Consensus 480 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (729)
+..+...+.+.|++++|...|+++.+.- . +.+...|..+..+|.+.|++++|+..++++.+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4445555666666666666666665410 0 1122333444444444444444444444444332 1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 004813 545 YTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVE 576 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 576 (729)
.+...+..+..+|...|++++|++.|++..+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22333444444444444444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00041 Score=57.99 Aligned_cols=25 Identities=16% Similarity=-0.140 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSS 541 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~ 541 (729)
.....+.+.|++++|+..|++.++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=74.56 Aligned_cols=97 Identities=8% Similarity=0.024 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKA-----G-LVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD-----S--EV 649 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~ 649 (729)
+++.|..+|...|++++|..++++.++. | -.|+ ..+++.|...|...|++++|+.++++..+. | .+
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444455555555555544444321 1 1111 234455555555555555555555544332 1 11
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 650 LDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 650 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
....+.+.+..++...|.+++|..++.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444555666666667777777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=71.80 Aligned_cols=146 Identities=14% Similarity=0.035 Sum_probs=70.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4556666677778888888888777664 233321 122233333322211 125666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCChHHH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHG-LADGSQLHLV 636 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 636 (729)
+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++. .|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776433 5667777777777777777777777777653 343 3333344333 2234556677
Q ss_pred HHHHHHHHhC
Q 004813 637 SSGINKLVSD 646 (729)
Q Consensus 637 ~~~~~~~~~~ 646 (729)
..+++++...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=61.12 Aligned_cols=111 Identities=6% Similarity=-0.086 Sum_probs=60.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSS 638 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (729)
+.+.+++|.+.++...+..+. +...|..+..++...++++.+.... +.+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 344556666666666655433 5555555555555555443111111 01346666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 639 GINKLVSDSEVLDSSMYNILINGLWKE-----------GLTSQASYLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
.|++.++. -|.+...|..+..+|... |++++|++.|++.++ +.|+...|...+..+.
T Consensus 68 ~le~AL~l-dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 68 KFEEALLI-DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 66666655 233455566666666554 367777777777766 4566666655555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=6.7e-05 Score=59.68 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
+..+...+...|++++|++.+++..+. .+.+...|..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333334444444444444444444433 222333444444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0003 Score=72.21 Aligned_cols=86 Identities=8% Similarity=-0.014 Sum_probs=37.9
Q ss_pred cCCChHHHHHHHHHhhhC------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHH
Q 004813 72 NTNDLSSALKIFKWVSIQ------KRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKE-------RYPNVREALISLV 138 (729)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~ 138 (729)
.+|++++|+.+++.+... +..+....+++.+..+|...|++++|+.++++.++. +.+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555544321 011112334455555555555555555555444322 1112233444444
Q ss_pred HHHHhcCChhhHHHHHHHH
Q 004813 139 FSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 139 ~~~~~~~~~~~A~~~~~~~ 157 (729)
..|..+|++++|..++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 4555555555554444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00058 Score=54.03 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------HHh
Q 004813 581 DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD------SSM 654 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 654 (729)
+...|..+...+...|++++|.+.|++.++.. +.+...+..+..+|...|++++|++.+++..+. .+.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 56778889999999999999999999999853 236788899999999999999999999999987 2333 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004813 655 YNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
+..+..++...|++++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6777777777777776655544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0033 Score=52.06 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAV 497 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 497 (729)
++++|++.|++..+.| .++.. +...|...+.+++|.++|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555544 22222 3334444444555555555555542 34444444444544 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004813 498 EVFCCMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 542 (729)
+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34444445445544 455555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00038 Score=58.07 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004813 526 RKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR----------AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQ 595 (729)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 595 (729)
+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++..+. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 33445555555554443 2344444444444444433 45777777777766544 566666777777665
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004813 596 N-----------KLKDCALFFNVMVKAGLVPDRETMLSLL 624 (729)
Q Consensus 596 ~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (729)
| ++++|++.|++.++ +.|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 3 67777777777776 456655444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00068 Score=54.19 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
+|++.|++..+.. +.+...+..+...|...|++++|+..+++..+. .+.+...|..++.+|...|++++|.+.|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555432 123455555666666666666666666666654 23445566666666666666666666666655
Q ss_pred h
Q 004813 680 G 680 (729)
Q Consensus 680 ~ 680 (729)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0017 Score=48.92 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 004813 585 YCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVS 645 (729)
Q Consensus 585 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (729)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444321 11233334444444444444444444444444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0033 Score=47.29 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=8.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 004813 552 KIMLGLVKLQRAKDLLVVLAQML 574 (729)
Q Consensus 552 ~l~~~~~~~~~~~~A~~~~~~~~ 574 (729)
.+...+...|++++|...+++..
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00088 Score=51.89 Aligned_cols=63 Identities=13% Similarity=-0.088 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...+..+..+|...|++++|+..|+++.+. .+.+...|..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET-DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555556666666666655554 233445555566666666666666666665553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0026 Score=50.62 Aligned_cols=79 Identities=8% Similarity=-0.109 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 78 SALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 78 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
.|+..|+.+.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677766553 4567777778888888888888888888877765 556777777888888888888888888777
Q ss_pred Hh
Q 004813 158 NS 159 (729)
Q Consensus 158 ~~ 159 (729)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=49.95 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 548 STYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
..+..+...|...|++++|+..|++.++..+. +...|..+..+|...|++++|.+.|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444443322 23344444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.011 Score=57.01 Aligned_cols=75 Identities=12% Similarity=-0.079 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGL 692 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 692 (729)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 4456677776666666788888888888888864 6777777788888888888888888888877 3577766543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.006 Score=50.22 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHH
Q 004813 598 LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGS---QLHLVSSGINKLVSDSEVL--DSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...+.+-|.+..+.|. ++..+...+.+++++.+ +.++++.+++.+.+.. .| +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666776666554 68888888888888888 6668999999888863 23 4667778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHhhhh
Q 004813 673 YLLDLMLGKGWVPDATTHGLLVGSSV 698 (729)
Q Consensus 673 ~~~~~~~~~g~~p~~~~~~~ll~~~~ 698 (729)
++++.+++ +.|++.--..+...+-
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 99999998 5788766666655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0037 Score=63.00 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 653 SMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
.+++.|+..|...|++++|..++++.+
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 355666666666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0099 Score=59.99 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=57.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CCCCHHhHH
Q 004813 591 SMSEQNKLKDCALFFNVMVKA---GLVPD----RETMLSLLHGLADGSQLHLVSSGINKLVSD-----S--EVLDSSMYN 656 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 656 (729)
.+...|++++|.+++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++.+. | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777777766643 12222 245666777777777777777777766543 1 122234677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 004813 657 ILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.|+..|...|++++|..++++.++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788888888888888888777653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.021 Score=42.95 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 615 PDRETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 615 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.|...+..+..++...++ .++|..++++..+. -+.++..+..++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677777777754444 68888999888887 4667778888889999999999999999999875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.008 Score=60.54 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCC-ccc-HHhHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004813 132 EALISLVFSFVNHYRVNGAMRVLVNMNS-----GGF-KLS-VDVFNVVLGAIVEEKRGFADFVFVYKEMV 194 (729)
Q Consensus 132 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 194 (729)
.+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|-..|... |++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q-g~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL-ENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 4444455555555555555555544421 111 111 22344444444444 55555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.12 Score=49.81 Aligned_cols=66 Identities=5% Similarity=-0.081 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004813 199 VPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDL 266 (729)
Q Consensus 199 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 266 (729)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455566666555555566666666666666653 55555555566666666666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.2 Score=39.47 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004813 525 MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALF 604 (729)
Q Consensus 525 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 604 (729)
.|..++..++..+.... .+..-||.++--....-+-+...++++.+-+ -.| ....|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 45566666666555542 3333444444333333333444444433321 111 1234444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 605 FNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 605 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
+-.+- -+...+...+..+..+|.-+.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 43321 23345555666667777777777777775443 4667777777777777777777777777777777753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.23 E-value=7.1e-06 Score=79.94 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 004813 556 GLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL 635 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (729)
.|.+.++|+++.++.++ .+ .|.-.|...+..|+.+-|.++++-.++.| +...|...+-.|...=+.+-
T Consensus 463 LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp HHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHH
T ss_pred HHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHH
Confidence 45556666666554321 11 11222334455666666666666666543 33455555555555555555
Q ss_pred HHHH
Q 004813 636 VSSG 639 (729)
Q Consensus 636 A~~~ 639 (729)
++++
T Consensus 531 VlEl 534 (624)
T 3lvg_A 531 VLET 534 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.012 Score=59.38 Aligned_cols=61 Identities=11% Similarity=-0.103 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 004813 97 DTYCKMILKLGLAGNVEEMEGLCQNMVKE-------RYPNVREALISLVFSFVNHYRVNGAMRVLVNM 157 (729)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 157 (729)
.+++.+..+|...|++++|+.++++.++. ..|....+++.|...|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444555555555555555555444322 11112334444445555555555554444444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.2 Score=55.96 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=70.3
Q ss_pred CChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 004813 181 RGFADFVF-VYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSI 259 (729)
Q Consensus 181 ~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 259 (729)
+++++|.+ ++..+ + +......++..+.+.|.++.|+++.+... .-.......|+++.|.++
T Consensus 613 ~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 613 GEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDL 674 (814)
T ss_dssp TCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHH
Confidence 67777765 44111 1 12223566666777777777776553111 112234556777777776
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 260 LGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIV 335 (729)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 335 (729)
.+.+ .+...|..+...+.+.|+++.|.++|..+.+ |..+...+...|+.+...++.+....
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5432 4556777788888888888888887776643 33444445556666655554444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.07 Score=40.10 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 004813 93 QHTADTYCKMILKLGLAGN---VEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGG 161 (729)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 161 (729)
+.++..+..+..++...++ .++|..++++.++.+ |.+..+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 688888888888877 6777888888888888888888888888887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.02 Score=43.81 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=6.6
Q ss_pred HHHhcCChhHHHHHHHHH
Q 004813 556 GLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 556 ~~~~~~~~~~A~~~~~~~ 573 (729)
++...|++++|++.|++.
T Consensus 44 ~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 44 AYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333333333333333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.51 Score=39.90 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=63.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 004813 175 AIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVD 254 (729)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 254 (729)
...+. |+++.|.++.+++. +...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 14 LAL~l-g~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEY-GNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHT-TCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhc-CCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34445 77777777766652 566777777777777777777777776542 334444455566766
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 255 DSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 255 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
+..++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66655555544432 455555566677777777776544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.43 Score=44.00 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-CCH
Q 004813 218 IESALDQFRRMHKKGCCPN---SRTFEIVIKGLIAN-----SRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE-NKL 288 (729)
Q Consensus 218 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 288 (729)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666653 344 44677777777773 77888888888777755433456666677777774 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 004813 289 EEAIRLFKMMRALDLM 304 (729)
Q Consensus 289 ~~A~~~~~~m~~~~~~ 304 (729)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888777776544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.063 Score=42.40 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=70.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChh
Q 004813 594 EQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHL---VSSGINKLVSDSEV-LDSSMYNILINGLWKEGLTS 669 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 669 (729)
.......+.+-|.+....|. |+..+-..+.+++.+.++... ++.+++.+...+.+ ........|+-++.+.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33445566666666665544 778888888999998887665 88888888876312 24456778899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 670 QASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 670 ~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
+|.+.++.+++ +.|++.-...|
T Consensus 92 ~A~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHH
Confidence 99999999998 57876444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.02 Score=43.73 Aligned_cols=54 Identities=4% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 591 SMSEQNKLKDCALFFNVMVKAGLVP-DRE-TMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+...|++++|.+.++++++. .| +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555442 22 233 4444444455555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.90 E-value=2.7 Score=46.10 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=122.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhH--HHHHHHHhhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 004813 416 WLCENEEIRKAYELLGRMVVSSVVPDCATY--SAFVLGKCKLCNYEDALRVFRQVSAQSL-------VLDSISYSKLVEG 486 (729)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 486 (729)
+....|+.++++.+++.....+-..+..+- ..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 344566666666666655432101122221 2222233344444455665555443211 0112222333333
Q ss_pred HHccCC-HHHHHHHHHHHHHCCCCCCHHH--H--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 004813 487 LCQVEK-ITEAVEVFCCMSKNGCSLSSSS--F--NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQ 561 (729)
Q Consensus 487 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 561 (729)
++-.|. -+++.+.+..+.... +..+ . ..|...+.-.|+.+....++..+.+.. .-+..-...+.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCC
Confidence 333332 234455555554421 2111 1 123333445566666666666665432 112222223333444667
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHH
Q 004813 562 RAKDLLVVLAQMLVEGCALDVEAYC---ILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH--GLADGSQLHLV 636 (729)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A 636 (729)
+.+.+..+.+.+... ..|. .-|. .+.-+|+-.|+.....+++..+... ++..+-...+- ++...|+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred ChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 777777777766653 1222 2222 2233455667766666677777653 23222222222 33345555666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 637 SSGINKLVSDSEVLDSSMYNILINGLWKEGLT-SQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
.++++.+.+.+ .|....-..++-+....|+. .+|+.++..+.. .+|..+-...+-+
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 66666665542 33333333444444445544 467777777763 4565554444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.46 Score=52.89 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=86.1
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChh
Q 004813 106 LGLAGNVEEMEG-LCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFA 184 (729)
Q Consensus 106 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 184 (729)
....+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+. +. .-+...... |+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~-~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKV-GQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHH-TCHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhc-CCHH
Confidence 345666777665 43211 1 022235666666677777777655421 11 112233445 7788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMF 264 (729)
Q Consensus 185 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 264 (729)
.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 2567788888888888888888888876643 3344445555666666555555544
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 265 DLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMM 298 (729)
Q Consensus 265 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (729)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4332 333444455566666666655443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.043 Score=42.46 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDS------EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
.+..+...+...|+++.|...++.+.+.. ..+...++..|+.+|.+.|++++|..+++++.+ +.|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 33444555555555555555555544320 122344556666666666666666666666665 345543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.28 Score=41.50 Aligned_cols=102 Identities=12% Similarity=0.214 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004813 211 VLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEE 290 (729)
Q Consensus 211 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (729)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|....+ +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877665 2667788888888888888888888877765 5556666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 291 AIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDM 333 (729)
Q Consensus 291 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 333 (729)
-.++-+.....| -++.....+...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666655554443 2445555666778888887777443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.075 Score=43.72 Aligned_cols=22 Identities=0% Similarity=0.033 Sum_probs=10.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.-+|.+.|++++|.++++.+++
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0018 Score=63.60 Aligned_cols=224 Identities=13% Similarity=0.185 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004813 201 NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIP 280 (729)
Q Consensus 201 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 280 (729)
....|..|..+....+++.+|++.| + +. -|+..|..+|.+..+.|.++.-...+....+.. -+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--I-kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--I-KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--C-CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--H-hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456778888888888888777655 2 22 367778888888888888888888877766542 33444567888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHH
Q 004813 281 MLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDE 360 (729)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 360 (729)
+|++.+++.+-.+++. .||..-...+..-|...|.++.|.-+|..+.. |..+...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 8888888665444321 26666677777888888888888777765432 1122222333344333
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004813 361 SVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVP 440 (729)
Q Consensus 361 a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 440 (729)
|.+.-++ ..++.+|..+-.+|...+++..|.-.--.+.- ...-...++..|-..|.+++-+.+++...... ..
T Consensus 189 AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 189 AVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp STTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred HHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 3322111 22344455555566666555555433322222 22333444445555566666555555544221 23
Q ss_pred CHHhHHHHHHHHhhc
Q 004813 441 DCATYSAFVLGKCKL 455 (729)
Q Consensus 441 ~~~~~~~ll~~~~~~ 455 (729)
..-.|+-|.-.|++-
T Consensus 262 HmGmFTELaILYsKY 276 (624)
T 3lvg_A 262 HMGMFTELAILYSKF 276 (624)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHhc
Confidence 444555555444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=47.82 Aligned_cols=79 Identities=6% Similarity=0.086 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc-CC
Q 004813 564 KDLLVVLAQMLVEGCALD---VEAYCILIQSMSEQ-----NKLKDCALFFNVMVKAGLVP--DRETMLSLLHGLADG-SQ 632 (729)
Q Consensus 564 ~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~ 632 (729)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++..+.+.++.. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 3445555555544 233 33455555555552 5666666666666552 33 244455555555553 55
Q ss_pred hHHHHHHHHHHHhC
Q 004813 633 LHLVSSGINKLVSD 646 (729)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (729)
.++|.+.+++....
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.33 Score=37.32 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLV 575 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 575 (729)
+..+..++.+.|+++.|...+++..+
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444444444444444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.45 Score=38.54 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
++.++|.++|+.+++.+-.- ...|......-.++|++..|.+++.+.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44555555555554321111 333333333334444455555554444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.2 Score=40.58 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHhccCChHHHHHHHHHHHhCC
Q 004813 581 DVEAYCILIQSMSEQNKL------KDCALFFNVMVKAGLVPDRE-TMLSLLH------GLADGSQLHLVSSGINKLVSDS 647 (729)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 647 (729)
|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6667777777663 444321 1111111 1223489999999999997663
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 648 EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 648 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
-.. ...|-..+..-.+.|+...|.+++.+....+-+| .......|..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 334 7889999999999999999999999999876554 44555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=2.1 Score=33.86 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 515 FNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
....++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444444455555555555443221 134444444555555555555555555555555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.85 Score=36.13 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 004813 612 GLVPDRETMLSLLHGLADGSQL---HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT 688 (729)
Q Consensus 612 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 688 (729)
+-.|+..+--.+.+++.+..+. .+++.+++.+.+.+.......+..|+-++.+.|++++|.++.+.+++ ..|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 4457777777888888877654 46788888888764223456788899999999999999999999997 578876
Q ss_pred HHHHHHhh
Q 004813 689 THGLLVGS 696 (729)
Q Consensus 689 ~~~~ll~~ 696 (729)
-...|-..
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.34 Score=38.23 Aligned_cols=21 Identities=0% Similarity=0.047 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~ 610 (729)
-++.+.|++++|.++++.+++
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344444555555555554444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.23 E-value=2.2 Score=34.26 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 614 VPDRETMLSLLHGLADGSQL---HLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
.|+..+--.+.+++.+..+. .+++.+++.+...+..........|+-++.+.|++++|.++.+.+++ ..|++.-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 57777777888888877654 46777888877753223455777888899999999999999999998 57877554
Q ss_pred HHHHhh
Q 004813 691 GLLVGS 696 (729)
Q Consensus 691 ~~ll~~ 696 (729)
..|-..
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1.4 Score=43.51 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=57.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 004813 620 MLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATTHG 691 (729)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 691 (729)
...++.++...|+.++|...+..+... .|.+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667777889999999888888876 577888999999999999999999999888654 48899887643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.46 Score=50.94 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=42.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 004813 625 HGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLML 679 (729)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (729)
..|...|+++.|+++.++.... .|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888877 56677888888888888888888888887763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.94 E-value=8.3 Score=38.83 Aligned_cols=189 Identities=10% Similarity=0.023 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cc
Q 004813 420 NEEIRKAYELLGRMVVS-----SVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLC----QV 490 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 490 (729)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36778888777665432 23445566777788888888888877776665543222 1222233333221 12
Q ss_pred CCHHH--HHHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHH
Q 004813 491 EKITE--AVEVFCCMSK--NG-CSL---SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSY-T----TSTYTKIMLGL 557 (729)
Q Consensus 491 g~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 557 (729)
...+. -..+.+.... .| +-. .......|...|...|++.+|..++..+...-... + ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22111 1111111100 00 111 11122345555556666666666665554211111 1 12344444555
Q ss_pred HhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVE----GCALD--VEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
...+++.+|..++.++... ...|+ ...+...+..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556666665555554321 11111 1233444445555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.69 E-value=18 Score=39.74 Aligned_cols=154 Identities=10% Similarity=-0.024 Sum_probs=64.8
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHH
Q 004813 452 KCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSF--NILIYGLCVMRKVD 529 (729)
Q Consensus 452 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 529 (729)
+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 344555555555555554431 1111122222223334566666666666655421 1111111 12333455566655
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 004813 530 KAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKL-KDCALFFNVM 608 (729)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~ 608 (729)
...+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+. .++.+++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666655431 2222222222233344455554555554443322 22322222222333333332 4555555555
Q ss_pred H
Q 004813 609 V 609 (729)
Q Consensus 609 ~ 609 (729)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=15 Score=38.60 Aligned_cols=376 Identities=10% Similarity=-0.021 Sum_probs=194.2
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004813 67 IRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYR 146 (729)
Q Consensus 67 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (729)
+..|.+.++|...+.++.. .+.+...-+....+....|+..+|......+-..+ ......+..++..+.+.|.
T Consensus 79 l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 4455567777777765532 24566666667778888898888887777776665 4455677788888877665
Q ss_pred hhh--HHHHHHHHHhCCC-----------cccHHh-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHH
Q 004813 147 VNG--AMRVLVNMNSGGF-----------KLSVDV-FNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDT---LNYLL 209 (729)
Q Consensus 147 ~~~--A~~~~~~~~~~~~-----------~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li 209 (729)
... ..+-+..+...|- +++... ...++. +. .+...+...... +.++... +...+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~a-l~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS-LA---NNPNTVLTFART-----TGATDFTRQMAAVAF 222 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH-HH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHH-HH---hChHhHHHHHhc-----cCCChhhHHHHHHHH
Confidence 433 2222222333221 111111 111111 11 222333222211 1222221 22223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004813 210 EVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIK----GLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRE 285 (729)
Q Consensus 210 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (729)
.-+.+ .+.+.|...+....+.. ..+......+-. .+...+...++...+....... .+.....-.+....+.
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 33333 47899999998886533 223333322322 2333443556666666655433 3333344455556688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 004813 286 NKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFL 365 (729)
Q Consensus 286 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l 365 (729)
|+++.|...|+.|..... ......--+..++...|+.++|..+|..+.. +. +|..++.+ .+.|..-. +
T Consensus 299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~----~ 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE----L 366 (618)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC----C
T ss_pred CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC----C
Confidence 999999999999876321 1233333455677889999999999999864 22 34333322 22221100 0
Q ss_pred HhhcCCCCC--------CchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 366 EDKCGYVTS--------PHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 366 ~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
........ .....+..+...|....|...+..+.... +......+.......|.++.++.........+
T Consensus 367 -~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~ 443 (618)
T 1qsa_A 367 -KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (618)
T ss_dssp -CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred -CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence 00000000 01223456778899999998888876642 22223344455566777877765554332221
Q ss_pred CC--CCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH
Q 004813 438 VV--PDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDS 477 (729)
Q Consensus 438 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (729)
.. .-+..|...+....+...++...-.--...+.++.|+.
T Consensus 444 ~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 444 HLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp CHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred chhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 00 00113455555555554444433222223345555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.18 E-value=14 Score=37.25 Aligned_cols=326 Identities=10% Similarity=0.081 Sum_probs=165.9
Q ss_pred CChHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 74 NDLSSALKIFKWVSIQ----KRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 74 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
++++.|++.+-.+.++ .....+......++..|...++|+...+.+..+.... .-.......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH--------
Confidence 6788888777665543 2345567777888888888888887777665554332 11222222333222
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcC-CChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEK-RGFADFVFVYKEMVKAGIVP---NVDTLNYLLEVLFETNRIESALDQF 225 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~A~~~~ 225 (729)
..++... ..++..+...++..+.... |. +-. .......|...|...|++.+|.+++
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vte~k---------------iflE~erarl~~~La~i~e~~g~~~eA~~iL 160 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVTENK---------------IFVEVERARVTKDLVEIKKEEGKIDEAADIL 160 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSSSCC---------------CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHhccc---------------hHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1222211 0122222222222211100 10 000 1223346777888889999999999
Q ss_pred HHHHhC--CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHhHHHHHHHHHhcCCHHHHHHH
Q 004813 226 RRMHKK--GCCPN---SRTFEIVIKGLIANSRVDDSVSILGEMFD----LGIQLE--LSFYTCIIPMLCRENKLEEAIRL 294 (729)
Q Consensus 226 ~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 294 (729)
..+... |..+. ...+...++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|-+.
T Consensus 161 ~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 161 CELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 887653 22211 24566677888889999999988887642 222222 23566777778888999888888
Q ss_pred HHHHHhC-CCCCCHhhHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc--CChHHHHHHHHh
Q 004813 295 FKMMRAL-DLMPDELTYEE----LINCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV--GKFDESVNFLED 367 (729)
Q Consensus 295 ~~~m~~~-~~~p~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~l~~ 367 (729)
|.++.+. ...-|...+.. ++.+..-.+....-..++.........++...+..++.+|... .+++...+.+..
T Consensus 241 y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 241 LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 8776542 01112222221 1112222222222223333333332334556677778877654 456666666654
Q ss_pred hcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC------CcccchHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004813 368 KCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA------DCDSWNIPIRWLCENEEIRKAYELLGRMVVSS 437 (729)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 437 (729)
....+...... .+.-.....+.+.+.++++. +..++..+...+. =..+++...+.+|...|
T Consensus 321 ~L~~~~~~~~~-------~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~--l~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 321 VLNEDDLAFGG-------EANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD--LTESQTETYISDLVNQG 387 (445)
T ss_dssp STTTCCSSCCC-------SCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT--SCHHHHHHHHHHHHHHT
T ss_pred Hhcccchhhhc-------chhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC--cCHHHHHHHHHHHHHCC
Confidence 43333221100 00000111122222222110 2333444444442 25788899999998765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=4.1 Score=40.23 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 004813 133 ALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVK-----AGIVPNVDTL 205 (729)
Q Consensus 133 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 205 (729)
+...++..+...|++.+|...+..+.... +.+...+..+|.++.+. |+..+|++.|+++.+ .|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34445555666666666666666664432 44555666666666666 666666666666542 3666655543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.91 E-value=2.5 Score=45.36 Aligned_cols=49 Identities=10% Similarity=-0.076 Sum_probs=41.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhhhhcc
Q 004813 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSSVGEE 701 (729)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 701 (729)
+..-|..|+....+.+++++|.+.|+..+.. +-+...+.-||..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 4456999999999999999999999999974 577888999999997654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.53 E-value=5.3 Score=29.68 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 599 KDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
=+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444455554455555555555555555555555555555555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.52 E-value=4.7 Score=29.98 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGS 696 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 696 (729)
+.=+..+.++.+...+..|++.+..+.+++|.+.+++.-|+++++-++.+ ..+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34455566666666666666666666666666666666666666666643 22333445555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.46 E-value=12 Score=43.19 Aligned_cols=89 Identities=7% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 004813 166 VDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN----VDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFE 241 (729)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 241 (729)
..-|..++..+-+. +.++.+.+.-....+...+-+ ...|..+.+.+...|++++|...+-.+.....+ .....
T Consensus 899 ~~YY~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr 975 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLL 975 (1139)
T ss_dssp HHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHH
Confidence 34566677777776 777777776665554321111 125677778888888888888888777765332 44566
Q ss_pred HHHHHHHhcCChhHHH
Q 004813 242 IVIKGLIANSRVDDSV 257 (729)
Q Consensus 242 ~li~~~~~~g~~~~a~ 257 (729)
.|+..++..|..+.-.
T Consensus 976 ~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhCCChhhhh
Confidence 6777777766655443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.45 E-value=4.2 Score=33.72 Aligned_cols=27 Identities=4% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
++..+.+++...|++.+|...|++.++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566666666666666666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.31 E-value=13 Score=42.75 Aligned_cols=156 Identities=11% Similarity=0.026 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004813 550 YTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDV----EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLH 625 (729)
Q Consensus 550 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (729)
|..++..+.+.+.++.+.+.-...++....-+. ..|..+.+.+...|++++|-..+-.+-.... -...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 445555555556666665555554443111111 1355556666666666666655555544322 2334444444
Q ss_pred HHhccC------------ChHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHHHhCC---CCC--
Q 004813 626 GLADGS------------QLHLVSSGINKLVSD--SEVLDSSMYNILINGLWKEGLTSQASY-LLDLMLGKG---WVP-- 685 (729)
Q Consensus 626 ~~~~~g------------~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~g---~~p-- 685 (729)
.++..| ..++..+++..-... .....+.-|..|-.-+...||+..|.+ +|+.+.+.+ -..
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~ 1059 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGK 1059 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccc
Confidence 444333 334444444332221 011122345566666677788876554 466655421 111
Q ss_pred -----CHHHHHHHHhhhhhcchhhhhh
Q 004813 686 -----DATTHGLLVGSSVGEEIDSRRF 707 (729)
Q Consensus 686 -----~~~~~~~ll~~~~~~~~~~~~~ 707 (729)
-...|-++|+++.--+..+++.
T Consensus 1060 ~~~~~q~~~yL~~INaLslvd~~~aWI 1086 (1139)
T 4fhn_B 1060 KERTFIIEHYLIVLNTLELLPKEDTWI 1086 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCCC
T ss_pred hhHHHHHHHHHHHHHHHhcCChhhCEE
Confidence 1245777888876554434433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.67 E-value=3.8 Score=33.97 Aligned_cols=104 Identities=10% Similarity=0.018 Sum_probs=66.8
Q ss_pred CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 577 GCALDVEAYC--ILIQSMSEQNKLKDCALFFNVMVKA-GLVPDR-------ETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 577 ~~~p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
|..|....|+ .-++.+...|.++.|+-+.+.++.. +..|+. .++..+.+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445444333 3356677888899988887776643 223331 35667788999999999999999986432
Q ss_pred --CC----------------------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 647 --SE----------------------VLDSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 647 --~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+ ..+...-.-+..+|.+.|++++|+.+++.+..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 01 11123445588999999999999999887643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.36 E-value=23 Score=33.57 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=56.2
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHhHHHHHHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELL----GRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++. +-+.+.++++|......++..+
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455555666666666666554321 1233344444333333 4444556666666666665555
Q ss_pred hhcCCHH-HHHHHHHHHH----hC--CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 004813 453 CKLCNYE-DALRVFRQVS----AQ--SLVLDSISYSKLVEGLCQVEKITEAVEVF 500 (729)
Q Consensus 453 ~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 500 (729)
.....-+ .-..+.+.++ +. ...-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4433210 1122222222 11 13346666777777777777777777766
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.52 E-value=27 Score=32.80 Aligned_cols=111 Identities=14% Similarity=0.042 Sum_probs=60.7
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHhHHHHHHHH
Q 004813 377 NALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYEL----LGRMVVSSVVPDCATYSAFVLGK 452 (729)
Q Consensus 377 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~ll~~~ 452 (729)
.++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-+.+.+++++......++..+
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 556666666667776666654432 223444554444443 44445556777777666666655
Q ss_pred hhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004813 453 CKLCNYE-DALRVFRQVS----AQS--LVLDSISYSKLVEGLCQVEKITEAVEVFC 501 (729)
Q Consensus 453 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 501 (729)
.....-+ .-.++.+.++ +.| ..-|+.....+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4422111 1122222222 221 22367777788888888888888777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.26 E-value=9.7 Score=30.20 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQR---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444544443 234555555555543211233333444455566666666666666655
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.98 E-value=9 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+-++.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44555555555666777777777777777777777777777766665 223344455443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.97 E-value=10 Score=29.94 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
|.-+..+-++.+...+..|++.+....+++|.+.+|+.-|+++||-++.+ ..+....|..++.-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44567777888888889999999999999999999999999999999875 345566687777654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.95 E-value=17 Score=29.26 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 545 YTTSTYTKIMLGLVKLQR---AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 545 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 234455555555443221222233344455555666666665555555
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=50 Score=34.69 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 004813 76 LSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLV 155 (729)
Q Consensus 76 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 155 (729)
+.+...|++. .++.+.....-..-+..+++.+++.....++.. .+.+...-.....+....|+..+|.....
T Consensus 55 ~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 55 AVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 4444444433 333344444445556666777777766654432 24456666666667777777666666555
Q ss_pred HHHhCCCcccHHhHHHHHHHHHhc
Q 004813 156 NMNSGGFKLSVDVFNVVLGAIVEE 179 (729)
Q Consensus 156 ~~~~~~~~~~~~~~~~ll~~~~~~ 179 (729)
.+-..| ...+..+..++..+.+.
T Consensus 127 ~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 127 ELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHhCC-CCCcHHHHHHHHHHHHC
Confidence 553332 22333344444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.31 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.7 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.9 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.42 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.88 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.98 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.85 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.6e-20 Score=189.91 Aligned_cols=380 Identities=11% Similarity=-0.024 Sum_probs=182.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 004813 246 GLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDD 325 (729)
Q Consensus 246 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 325 (729)
.+.+.|++++|.+.++++.+..+ -+...+..+...|.+.|++++|...|++..+..+ -+..+|..+..+|...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccccc
Confidence 34445555555555555544321 2344455555555555555555555555554331 234455555555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 326 ANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIA 405 (729)
Q Consensus 326 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (729)
|...+....+... .+.... ..........+....+.............
T Consensus 86 A~~~~~~~~~~~~-~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGY-------------------------------INLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHH-------------------------------HHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred ccccccccccccc-cccccc-------------------------------ccccccccccccccccccccccccccccc
Confidence 6665555554321 111111 11112222222222222222222222222
Q ss_pred CcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004813 406 DCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVE 485 (729)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 485 (729)
...............+....+...+....... +.+...+..+...+...|+++.|...++...+..+. +...+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 211 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhh
Confidence 22223333333344444444444444444332 113344444455555555555555555555544322 4445555555
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKD 565 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 565 (729)
.+...|++++|...+++....+ +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5555566666666555555432 2344445555555555555555555555555543 2334455555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004813 566 LLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLV 644 (729)
Q Consensus 566 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (729)
|++.++......+ .+...+..+...+...|++++|++.|++.++. .|+ ...+..+..+|...|++++|++.++++.
T Consensus 290 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 290 AEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554422 24445555555555555555555555555542 222 3445555555555555555555555555
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCC
Q 004813 645 SDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 645 ~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
+. .|.+...|..++.+|.+.||
T Consensus 367 ~l-~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RI-SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TT-CTTCHHHHHHHHHHHHHTCC
T ss_pred Hh-CCCCHHHHHHHHHHHHHcCC
Confidence 54 23344455555555555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-20 Score=189.92 Aligned_cols=382 Identities=12% Similarity=-0.010 Sum_probs=309.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccC
Q 004813 278 IIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENLRLDDANDILEDMIVIGLTPT-DDVFVDIVRGLCEVG 356 (729)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~ 356 (729)
+...+.+.|++++|.+.|+++.+..+ -+..++..+...|.+.|++++|...|++.++.. |+ ..++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~----------- 70 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAY----------- 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH-----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH-----------
Confidence 45567788999999999999887642 357788888889999999999999999988753 43 4445
Q ss_pred ChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004813 357 KFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVS 436 (729)
Q Consensus 357 ~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 436 (729)
..+...|.+.|++++|...+.......+.+...+..........+....+..........
T Consensus 71 --------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (388)
T d1w3ba_ 71 --------------------SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp --------------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred --------------------HHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 667777888888888888888888776665555555556666666666666666665554
Q ss_pred CCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004813 437 SVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFN 516 (729)
Q Consensus 437 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 516 (729)
... ...............+....+...+......... +...+..+...+...|++++|...+++..+.. +-+...+.
T Consensus 131 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T d1w3ba_ 131 NPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp CTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccc-cccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence 433 4444555566667788888888888887776443 67788888999999999999999999998753 34677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004813 517 ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQN 596 (729)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 596 (729)
.+...+...|++++|...+++..... ..+...+..+...+.+.|++++|+..|++..+..+. +..+|..+...+...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 99999999999999999999998875 466777888999999999999999999999987554 6788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 597 KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLD 676 (729)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (729)
++++|.+.++..... .+.+...+..+...+...|++++|++.+++..+. .|.+..+|..++.+|.+.|++++|.+.|+
T Consensus 286 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998875 3456788889999999999999999999999987 45678889999999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHhhhhhcch
Q 004813 677 LMLGKGWVPD-ATTHGLLVGSSVGEEI 702 (729)
Q Consensus 677 ~~~~~g~~p~-~~~~~~ll~~~~~~~~ 702 (729)
+.++ +.|+ ...|..+..++.+.||
T Consensus 364 ~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 9997 4675 4567777777766554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.8e-13 Score=129.75 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=145.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNY 458 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 458 (729)
....+.+.|++++|...|+++.+..+.+..+|..+..++...|++++|...|.+..+..+. +...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 4456778888888888888888887777778888888888888888888888887776432 566777777788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 459 EDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
++|.+.++.+....... ...+........ ..+.......+..+...+...+|...+.++
T Consensus 104 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAY-AHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccch-HHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 88888888877643210 000000000000 000000111111222233344444444444
Q ss_pred HHcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 004813 539 YSSGT-SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-D 616 (729)
Q Consensus 539 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~ 616 (729)
.+... ..+...+..+...+...|++++|+..|++.....+. +...|..+...|...|++++|.+.|++.++. .| +
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH--hhcc
Confidence 43321 123334444455555555555555555555544322 3445555555555555555555555555542 22 2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhC----------CCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSD----------SEVLDSSMYNILINGLWKEGLTSQAS 672 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~ 672 (729)
...+..+..+|.+.|++++|++.|++..+. ........|..+..++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444555555555555555555555554431 12223345666666666666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=3.1e-12 Score=124.49 Aligned_cols=270 Identities=10% Similarity=-0.061 Sum_probs=186.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 004813 412 IPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE 491 (729)
Q Consensus 412 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 491 (729)
.....+.+.|++++|+..|+++++..+. +..+|..+..++...|++++|...|....+..+. +...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 3455667778888888888887776433 5667777777788888888888888877766443 5667777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004813 492 KITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLA 571 (729)
Q Consensus 492 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 571 (729)
++++|.+.++++... .|+............. ..+.......+..+...+.+.+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 888888888877764 2322111000000000 0001111112233445566788999998
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 004813 572 QMLVEGC-ALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVL 650 (729)
Q Consensus 572 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (729)
+..+..+ .++...+..+...+...|++++|+..+++..... +-+...|..+..+|...|++++|.+.++++.+. .+.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH-hhc
Confidence 8877643 3467788889999999999999999999998853 225778889999999999999999999999987 355
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----------CCCCCHHHHHHHHhhhhhcchhhhh
Q 004813 651 DSSMYNILINGLWKEGLTSQASYLLDLMLGK----------GWVPDATTHGLLVGSSVGEEIDSRR 706 (729)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------g~~p~~~~~~~ll~~~~~~~~~~~~ 706 (729)
+...|..++.+|.+.|++++|++.|++.++. ........|..+-.++...+..+..
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7888999999999999999999999998751 1122334455555555544444433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.9e-09 Score=102.97 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=155.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004813 444 TYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVE-KITEAVEVFCCMSKNGCSLSSSSFNILIYGL 522 (729)
Q Consensus 444 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (729)
.++.+...+.+.+.+++|+..++.+++.++. +...|+....++...| ++++|+..++++.+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3444555566677778888888888876554 6667777777777655 4788888888877653 44677778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 004813 523 CVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNK----- 597 (729)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----- 597 (729)
.+.|++++|+..++++.+.. +.+...|..+...+...|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 88888888888888887765 456777888888888888888888888888887555 66677776666655554
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhc--CC------
Q 004813 598 -LKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSE-VLDSSMYNILINGLWKE--GL------ 667 (729)
Q Consensus 598 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--g~------ 667 (729)
+++|++.+.++++.. +-+...|..+...+.. ...+++.+.++...+... ..+...+..++..|... ++
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 567888888777742 2246666666555544 345777777777765421 22344556666666543 33
Q ss_pred -hhHHHHHHHHHHh
Q 004813 668 -TSQASYLLDLMLG 680 (729)
Q Consensus 668 -~~~A~~~~~~~~~ 680 (729)
+++|.++++.+..
T Consensus 279 ~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 279 ILNKALELCEILAK 292 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3445555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.2e-09 Score=102.48 Aligned_cols=247 Identities=8% Similarity=0.051 Sum_probs=155.9
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004813 410 WNIPIRWLCENEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLC-NYEDALRVFRQVSAQSLVLDSISYSKLVEGLC 488 (729)
Q Consensus 410 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (729)
++.+...+.+.+.+++|+++++++++..+. +...|+....++...| ++++|...++.+.+..+. +..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 344455566667777777777777775422 4455666666666655 477888888877776554 6777777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC------
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQR------ 562 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 562 (729)
+.|++++|++.++++.+.. +.+...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 8888888888888887753 4467777778888888888888888888887765 3456667766666665554
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--CC-------
Q 004813 563 AKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADG--SQ------- 632 (729)
Q Consensus 563 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~------- 632 (729)
+++|++.+.+.++..+. +...|+.+...+.. ...+++.+.++...+....+ +...+..++..|... ++
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 46777777777776544 66777666655443 34577777777776642222 344555555555432 22
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 633 LHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 633 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
+++|.++++.+.+.--+....-|+.+...+
T Consensus 280 ~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 280 LNKALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 345555555554431122223455444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=7.8e-09 Score=98.65 Aligned_cols=189 Identities=8% Similarity=-0.069 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 491 EKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVL 570 (729)
Q Consensus 491 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 570 (729)
+..++|..+|++..+...+.+...|...+..+...|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888898888754455667788888888899999999999999887653344557888888888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC-C
Q 004813 571 AQMLVEGCALDVEAYCILIQS-MSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS-E 648 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 648 (729)
+++.+.++. +...|...... +...|+.+.|..+|+.+++. .+.+...|..++..+...|+.+.|+.+|++..... .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998887544 34444443333 34568899999999999985 33457788899999999999999999999998862 2
Q ss_pred CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004813 649 VL--DSSMYNILINGLWKEGLTSQASYLLDLMLGK 681 (729)
Q Consensus 649 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (729)
.| ....|...+..-...|+.+.+.++++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 2347888888888999999999999988763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.7e-08 Score=96.27 Aligned_cols=188 Identities=10% Similarity=0.019 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 457 NYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRS 536 (729)
Q Consensus 457 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (729)
..+++..+|+...+...+.+...|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 46788889998887544556778888888888999999999999999876422335578899999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004813 537 LAYSSGTSYTTSTYTKIMLG-LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAG-LV 614 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 614 (729)
++.+... .+...|...... +...|+.+.|..+|+.+.+..+. +...|..+++.+...|++++|..+|++.++.. ..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9987753 334444443333 34468899999999999987433 67889999999999999999999999998863 34
Q ss_pred CC--HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 615 PD--RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 615 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
|+ ...|...+..-...|+.+.+.++.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 457888888778889999999999998775
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.1e-08 Score=98.28 Aligned_cols=266 Identities=10% Similarity=-0.063 Sum_probs=153.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHH
Q 004813 415 RWLCENEEIRKAYELLGRMVVSSVVPD----CATYSAFVLGKCKLCNYEDALRVFRQVSAQS----LV-LDSISYSKLVE 485 (729)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~ 485 (729)
..+...|++++|++++++.+......+ ...+..+...+...|++++|...++...+.. .. .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666666666554422211 1234445556666677777776666655321 00 01223444555
Q ss_pred HHHccCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHhHHHHH
Q 004813 486 GLCQVEKITEAVEVFCCMSKN----GCSL---SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS----YTTSTYTKIM 554 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~ 554 (729)
.+...|++..+...+.+.... +... ....+..+...+...|+++.+...+......... .....+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 666677777777766665431 1111 1224445566677777777777777766553221 1233444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 004813 555 LGLVKLQRAKDLLVVLAQMLVE--GCALD----VEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP---DRETMLSLLH 625 (729)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~ 625 (729)
..+...++..++...+.+.... ..... ...+..+...+...|++++|...+++..+..... ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 5666677777777777665542 11111 2234455566677788888888877766542211 2344556677
Q ss_pred HHhccCChHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 626 GLADGSQLHLVSSGINKLVSD----SEVL-DSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
++...|++++|...++++... +..| ....+..+...|.+.|++++|.+.+++.++
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888888888888776532 2222 234677788888888888888888887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=5.1e-08 Score=95.37 Aligned_cols=295 Identities=7% Similarity=-0.098 Sum_probs=202.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-----cccchHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHH
Q 004813 379 LLECCCNAGKFFLAKCILEKMADRKIAD-----CDSWNIPIRWLCENEEIRKAYELLGRMVVSSVV-PD----CATYSAF 448 (729)
Q Consensus 379 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 448 (729)
....+...|++++|.+++++..+..+.+ ...+..+...+...|++++|...+++....... ++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3455678889999999998887765542 235667778888999999999999887653211 11 2345556
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCCHHHHHH
Q 004813 449 VLGKCKLCNYEDALRVFRQVSAQ----SLV--L-DSISYSKLVEGLCQVEKITEAVEVFCCMSKNG----CSLSSSSFNI 517 (729)
Q Consensus 449 l~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~ 517 (729)
...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+....... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 66788889999999888776532 111 1 22345667788889999999999998886642 1223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHH
Q 004813 518 LIYGLCVMRKVDKAIRLRSLAYSSG----TSY--TTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCAL---DVEAYCIL 588 (729)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l 588 (729)
+...+...++...+...+.+..... ..+ ....+..+...+...|++++|...+++........ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6777888899999988887765421 111 12345566677888999999999998876543222 24556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC----CCCC----CHHhH
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKA----GLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD----SEVL----DSSMY 655 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~ 655 (729)
..++...|++++|.+.++++... +..|+ ...+..+..+|...|++++|.+.+++..+. |... ....+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88899999999999999988742 44444 346777888999999999999999987664 2111 12234
Q ss_pred HHHHHHHHhcCChhHHHH
Q 004813 656 NILINGLWKEGLTSQASY 673 (729)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~ 673 (729)
..++..+...|..+++..
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 445555666666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.5e-09 Score=97.77 Aligned_cols=200 Identities=11% Similarity=-0.111 Sum_probs=118.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 004813 479 SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV 558 (729)
Q Consensus 479 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 558 (729)
+|..+..+|.+.|++++|.+.|++.++.. +-+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 45556667777777777777777777653 3456677777777777777777777777777654 234556667777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----hH
Q 004813 559 KLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQ----LH 634 (729)
Q Consensus 559 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~ 634 (729)
..|++++|...|++..+..+. +......+...+.+.+..+.+..+.......... ...+. ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--STHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh--hhhhh-HHHHHHHHHHHHHHHH
Confidence 777777777777777766433 4444434444445555555555555555543222 11111 2222221111 22
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004813 635 LVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDA 687 (729)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 687 (729)
.+...+...... .+....+|..++..|...|++++|.+.|++.+.. .|+.
T Consensus 193 ~~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred HHHHHHHHhhhc-CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 222222211111 1112346777889999999999999999998874 4654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=1.7e-09 Score=105.06 Aligned_cols=267 Identities=9% Similarity=-0.063 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-hHHHH---HHH-------HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 004813 422 EIRKAYELLGRMVVSSVVPDCA-TYSAF---VLG-------KCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQV 490 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~-~~~~l---l~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (729)
..++|++++++.++. .|+.. .|+.. +.. +...|.+++|..+++.+.+..++ +...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHh
Confidence 346677777766654 33332 22221 111 22344567788888888776554 666666666666654
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004813 491 E--KITEAVEVFCCMSKNGCSLSSSSFN-ILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLL 567 (729)
Q Consensus 491 g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 567 (729)
+ ++++|...++++.... +++...+. .....+...+.+++|+..++.+.+.. +-+...|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 4 5788888888887753 33455544 34456667788888888888888775 456777888888888888888776
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 004813 568 VVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDS 647 (729)
Q Consensus 568 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (729)
..+....+. .|+ ...+...+...+..+++...+....... .++...+..+...+...|+.++|...+.+..+.
T Consensus 199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 271 (334)
T d1dcea1 199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE- 271 (334)
T ss_dssp SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-
Confidence 655544432 111 1123334556677778888888877653 223445556666777788888888888888876
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHhhhhhcch
Q 004813 648 EVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDAT-THGLLVGSSVGEEI 702 (729)
Q Consensus 648 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~ 702 (729)
.+.+...|..++.+|...|++++|.+.++++.+ +.|+.. -|..+-..+.-.+.
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~e~~ 325 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLLENS 325 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHhHhhH
Confidence 344566788888899999999999999999887 467544 34555444443333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.1e-08 Score=94.94 Aligned_cols=217 Identities=12% Similarity=-0.072 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVP---DCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVE 498 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 498 (729)
+.+.++.-+++........ ...+|..+...|.+.|++++|...|+..++..+. ++.+|..+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 4455666666665442111 2235566677788888888888888888876554 77788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 499 VFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
.|+++.+.. +-+..++..+..+|...|++++|...|+...+.. +.+......+...+.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 888888753 3356677788888888888888888888887764 23444444444445555555555555555444322
Q ss_pred CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 579 ALDVEAYCILIQSMSEQN----KLKDCALFFNVMVKAGLVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 579 ~p~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
. ...++ ++..+.... ..+.+...+..... ..|+ ..+|..+...|...|++++|.+.|++....
T Consensus 171 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 E--QWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp C--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2 22222 122221111 12222222211111 1122 235666788888899999999999998876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2e-09 Score=104.55 Aligned_cols=273 Identities=7% Similarity=-0.062 Sum_probs=193.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH----------HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004813 380 LECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWL----------CENEEIRKAYELLGRMVVSSVVPDCATYSAFV 449 (729)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 449 (729)
+....+.+..++|.+++++....+|.+...|+..-..+ ...|++++|+..++......++ +...|..+.
T Consensus 36 ~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~ 114 (334)
T d1dcea1 36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 114 (334)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhh
Confidence 33333444457888888888888776666665443332 2345688999999998876533 556666666
Q ss_pred HHHhhcC--CHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004813 450 LGKCKLC--NYEDALRVFRQVSAQSLVLDSISY-SKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMR 526 (729)
Q Consensus 450 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (729)
.++...+ +++++...+..+.+.... +...+ ......+...+.+++|...++++.+.. +-+...|+.+..++...|
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6655554 589999999999887554 44444 445567778899999999999998874 457888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004813 527 KVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFN 606 (729)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 606 (729)
++++|...+....+.. |. .......+...+..+++...+.......+. +...+..+...+...|++++|...+.
T Consensus 193 ~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9888766554433321 11 122334455667778888888888776433 45556667777888899999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004813 607 VMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK 664 (729)
Q Consensus 607 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 664 (729)
+.... .| +...+..+..+|...|+.++|.+.++++.+.. |.+...|+.|...+.-
T Consensus 267 ~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 267 ELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHH
T ss_pred HHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHhH
Confidence 88764 33 35677888899999999999999999999862 3345677777666653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.4e-06 Score=73.94 Aligned_cols=135 Identities=7% Similarity=-0.078 Sum_probs=65.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 004813 558 VKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 558 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
...|++++|++.|.++ ..|+..+|..+..+|...|++++|++.|++.++.+. -+...|..+..+|.+.|++++|+
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHH
Confidence 3344444444444332 123334444444444444444444444444444211 12334444444444444444444
Q ss_pred HHHHHHHhCC--------------CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 638 SGINKLVSDS--------------EVL-DSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 638 ~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
+.|++..... ... ...++..+..++.+.|++++|.+.+++..+....|+.......+...
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 4444443320 001 12456667788888888888888888887654444444444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.4e-06 Score=73.01 Aligned_cols=120 Identities=8% Similarity=-0.099 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004813 522 LCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDC 601 (729)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 601 (729)
+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.++. +...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 444555555555554431 344455555555555666666666666665555433 455555555556666666666
Q ss_pred HHHHHHHHHCC--------------CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 602 ALFFNVMVKAG--------------LVPD-RETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 602 ~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
.+.|++.+... ..++ ..++..+..++.+.|++++|.+.++...+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66655554320 0111 245556677788888888888888887775
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=3.4e-06 Score=78.99 Aligned_cols=196 Identities=9% Similarity=-0.026 Sum_probs=121.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHhHHHH
Q 004813 484 VEGLCQVEKITEAVEVFCCMSKN----GCSL-SSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS-----YTTSTYTKI 553 (729)
Q Consensus 484 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l 553 (729)
...|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677778888888888777542 1111 1346777788888888888888888776542111 113345555
Q ss_pred HHHHHh-cCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----C-HHHHH
Q 004813 554 MLGLVK-LQRAKDLLVVLAQMLVE----GCAL-DVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVP-----D-RETML 621 (729)
Q Consensus 554 ~~~~~~-~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-----~-~~~~~ 621 (729)
...|.. .|++++|++.+++..+. +..+ -..++..+...+...|++++|.+.|+++....... . ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 566644 58888888888877643 1111 13456777888888899999999998887752111 1 12234
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHHh--cCChhHHHHHHHHHH
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSDSEV-LD---SSMYNILINGLWK--EGLTSQASYLLDLML 679 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 679 (729)
..+..+...|+.+.|.+.+++..+.... ++ ......++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4455666788888898888888776211 11 2244556666554 234777777776554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2e-06 Score=67.48 Aligned_cols=102 Identities=9% Similarity=-0.108 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
...+...|++++|+.+|++.++.. +-+...|..+..+|...|++++|+..+++..+. .+.++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh-ccchhhHHHHHHHHHHHccCH
Confidence 455667777777777777777642 224566777777777777777777777777776 356677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 669 SQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 669 ~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
++|+..|++..+ ..|+...+...+
T Consensus 88 ~~A~~~~~~a~~--~~p~~~~~~~~l 111 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 777777777776 356655444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.8e-06 Score=65.80 Aligned_cols=103 Identities=7% Similarity=-0.098 Sum_probs=64.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+.+.++.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 34556666777777777776666444 56666666667777777777777777766643 22456666666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
++|+..+++..+. .|.++..+..+.
T Consensus 88 ~~A~~~~~~a~~~-~p~~~~~~~~l~ 112 (117)
T d1elwa_ 88 EEAKRTYEEGLKH-EANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 7777777777665 233444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=5.7e-06 Score=77.36 Aligned_cols=167 Identities=10% Similarity=-0.053 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCc-ccHHh
Q 004813 99 YCKMILKLGLAGNVEEMEGLCQNMVKE----R-YPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG----GFK-LSVDV 168 (729)
Q Consensus 99 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~ 168 (729)
|......|...+++++|...|.+..+. + .+....+|..+..+|.+.|++++|.+.+++..+. +.. .....
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333455677777888887777776553 1 1112356777777777778888877777766332 111 11223
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------
Q 004813 169 FNVVLGAIVEEKRGFADFVFVYKEMVKA----GIVP-NVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNS------ 237 (729)
Q Consensus 169 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------ 237 (729)
+..+...+....|+++.|...+++..+. +.++ ...+|..+...+...|++++|++.|++..........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3334444433226666666666665421 1111 1234555566666666666666666665543111110
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004813 238 RTFEIVIKGLIANSRVDDSVSILGEMFD 265 (729)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 265 (729)
..+...+..+...|+++.|...++...+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1122233344455666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=0.00058 Score=62.25 Aligned_cols=225 Identities=11% Similarity=-0.028 Sum_probs=137.2
Q ss_pred HHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004813 442 CATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAVEVFCCMSKNGCSLSSSSFNI 517 (729)
Q Consensus 442 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 517 (729)
+..+..+...+.+.+++++|.++|+...+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445555555666677777777777776654 34444445555554 456777777777776654 3333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 518 LIYGLCV----MRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLV----KLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 518 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
+...+.. .++.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 3333332 45667777777777665421 11222222222 233455666666665553 2556666676
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004813 590 QSMSE----QNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINKLVSDSEVLDSSMYNILING 661 (729)
Q Consensus 590 ~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 661 (729)
..|.. ..+...+..+++...+.| +......+...|.. ..+.++|...|++..+.| ++..+..|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 66664 456667777777777654 45555555555543 567889999999988875 56677778887
Q ss_pred HHh----cCChhHHHHHHHHHHhCCCC
Q 004813 662 LWK----EGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 662 ~~~----~g~~~~A~~~~~~~~~~g~~ 684 (729)
|.. ..+.++|.++|++..+.|..
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 775 34788899999998877743
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.9e-06 Score=69.08 Aligned_cols=103 Identities=5% Similarity=-0.141 Sum_probs=63.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 004813 554 MLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQL 633 (729)
Q Consensus 554 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (729)
...|.+.|++++|+..|++.++..+. +...|..+..+|...|++++|.+.|+++++.. +-+...|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34556667777777777766666544 56666666666777777777777777766642 11345666666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004813 634 HLVSSGINKLVSDSEVLDSSMYNILI 659 (729)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~~~~~~~l~ 659 (729)
++|...+++..+. .+.+...+..+.
T Consensus 95 ~eA~~~~~~a~~~-~p~~~~~~~~l~ 119 (159)
T d1a17a_ 95 RAALRDYETVVKV-KPHDKDAKMKYQ 119 (159)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 7777777766665 233444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.3e-05 Score=66.89 Aligned_cols=89 Identities=7% Similarity=-0.019 Sum_probs=39.3
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhH
Q 004813 486 GLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKD 565 (729)
Q Consensus 486 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 565 (729)
.|.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|...|+++++.. +.+..+|..+..++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444432 2233444444444444444444444444444432 2233344444444444444444
Q ss_pred HHHHHHHHHHc
Q 004813 566 LLVVLAQMLVE 576 (729)
Q Consensus 566 A~~~~~~~~~~ 576 (729)
|...+++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 44444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=1.6e-06 Score=76.33 Aligned_cols=99 Identities=19% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004813 510 LSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILI 589 (729)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 589 (729)
|+...+......|.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 444445555556666666666666666655554 344555555666666666666666666666554322 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=4.5e-06 Score=73.22 Aligned_cols=120 Identities=6% Similarity=-0.097 Sum_probs=94.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 004813 544 SYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPD-RETMLS 622 (729)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 622 (729)
.|+...+......+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..|++.++ +.|+ ...|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 367777778889999999999999999999888655 788899999999999999999999999987 4554 678889
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 623 LLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
+..+|...|++++|+..|+++.+.. +.+...+...+..+...+.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888751 2222233344444444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.2e-06 Score=67.33 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhCCCCCC-HHhHHHHHHH
Q 004813 586 CILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQ---LHLVSSGINKLVSDSEVLD-SSMYNILING 661 (729)
Q Consensus 586 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 661 (729)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356777788888999999999888853 3367788888888876554 4568888888887632233 3477888999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 662 LWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
|.+.|++++|.+.|+++++ +.|+..-...+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHHHH
Confidence 9999999999999999987 568876655555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=0.0013 Score=59.69 Aligned_cols=226 Identities=8% Similarity=0.031 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCcccHHhHH
Q 004813 95 TADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN----HYRVNGAMRVLVNMNSGGFKLSVDVFN 170 (729)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (729)
|+..+..+...+.+.+++++|...|++..+.| +..++..|...|.. ..+...|..++......+.+ ....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhh
Confidence 34556666667777788888888888777665 45566667766665 45777777777777665422 2222
Q ss_pred HHHHHHHh---cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 004813 171 VVLGAIVE---EKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFE----TNRIESALDQFRRMHKKGCCPNSRTFEIV 243 (729)
Q Consensus 171 ~ll~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 243 (729)
.+...+.. ...+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 22222222 11566777777777777653 2222333333332 34566667777666554 355666666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004813 244 IKGLIA----NSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCR----ENKLEEAIRLFKMMRALDLMPDELTYEELIN 315 (729)
Q Consensus 244 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 315 (729)
...+.. ..+...+...++...+.| +......+...|.. ..++++|+..|....+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666664 345666777777766643 44445555555554 567888888888888775 4556666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCC
Q 004813 316 CLCE----NLRLDDANDILEDMIVIGL 338 (729)
Q Consensus 316 ~~~~----~~~~~~a~~~~~~m~~~~~ 338 (729)
.|.. ..+.++|.+.|++..+.|.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6654 3478888888888887763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=6.5e-06 Score=63.77 Aligned_cols=88 Identities=22% Similarity=0.098 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004813 589 IQSMSEQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGL 667 (729)
Q Consensus 589 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 667 (729)
...+.+.|++++|...|++.++. .| +...|..+..++.+.|++++|+..++++.+. .|.+...|..++..|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHCCC
Confidence 44556666666666666666664 23 3566666666666666777777777666665 34556666677777777777
Q ss_pred hhHHHHHHHHHH
Q 004813 668 TSQASYLLDLML 679 (729)
Q Consensus 668 ~~~A~~~~~~~~ 679 (729)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777766653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0025 Score=59.03 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=63.1
Q ss_pred cHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 004813 165 SVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVI 244 (729)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 244 (729)
+..--..+...|.+. |.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 13 n~~d~~~i~~~c~~~-~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDE-KMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp -----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CcCCHHHHHHHHHHC-CCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 333333444445555 666666666654431 4455566666666666666554331 445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 004813 245 KGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELINCLCENL 321 (729)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 321 (729)
..+.+......+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 666555444332 12222223344444556666666666666666666554321 245555666666666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=1.3e-05 Score=61.96 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 64 DHLIRVLDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVN 143 (729)
Q Consensus 64 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (729)
......+.+.|++..|...|+.+.... +.++.+|..+..++.+.|++++|+..++..++.+ |.+..++..+..+|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 445666777888888888888877664 4567788888888888888888888888887776 6677888888888888
Q ss_pred cCChhhHHHHHHHH
Q 004813 144 HYRVNGAMRVLVNM 157 (729)
Q Consensus 144 ~~~~~~A~~~~~~~ 157 (729)
.|++++|.+.|++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=9.9e-06 Score=63.49 Aligned_cols=20 Identities=0% Similarity=0.024 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004813 590 QSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 590 ~~~~~~~~~~~A~~~~~~~~ 609 (729)
.+|.+.|++++|++.|++++
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLL 99 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33333333333333333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4.8e-05 Score=63.99 Aligned_cols=73 Identities=10% Similarity=-0.064 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLV 694 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 694 (729)
+|+.+..+|.+.|++++|+..+++.++. -|.++..|..++.+|...|++++|...|++.++ +.|+.......+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l 136 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQL 136 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc-cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4555666666777777777777777665 244666667777777777777777777777665 345444433333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=6.7e-05 Score=61.75 Aligned_cols=77 Identities=10% Similarity=-0.077 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
.+|..+..+|.+.|++++|++.++++.+. .|.+..+|..++.+|...|++++|+..|++.++ +.|+.......+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 36677888899999999999999999887 466888999999999999999999999999987 467766555444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=6e-06 Score=83.71 Aligned_cols=133 Identities=8% Similarity=-0.044 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004813 491 EKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVL 570 (729)
Q Consensus 491 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 570 (729)
+.++.|+..+....+.. .++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33444444444333221 2234455566666666777777766655554321 1235556667777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004813 571 AQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD 629 (729)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (729)
++..+..+. +...|+.+...+...|+..+|...|.+.+... .|-...+..|...+.+
T Consensus 176 ~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 777776443 55677777777777777777777777777642 3456666666665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.00019 Score=60.15 Aligned_cols=131 Identities=6% Similarity=-0.135 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004813 514 SFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMS 593 (729)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (729)
.+......+.+.|++++|+..|.+.++....... ..+.-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3444555677777777777777776653211000 000000011111 1235666777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 004813 594 EQNKLKDCALFFNVMVKAGLVP-DRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLT 668 (729)
Q Consensus 594 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 668 (729)
+.|++++|+..+++.++. .| +...+..+..+|...|++++|+..|+++.+. .|.+......+..+..+.+..
T Consensus 74 k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888874 34 5777788888888888888888888888876 244666666665555444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=8.1e-05 Score=59.00 Aligned_cols=92 Identities=9% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-------HHhHHHHH
Q 004813 587 ILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLD-------SSMYNILI 659 (729)
Q Consensus 587 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~ 659 (729)
.+...+...|++++|++.|.+.++.+. .+...+..+..+|.+.|++++|+..++++++.. +.+ ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHH
Confidence 345555666666666666666665421 235555566666666666666666666655531 111 12455566
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004813 660 NGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (729)
..+...+++++|+++|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666677777777777776664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=0.01 Score=54.76 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=70.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 004813 235 PNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPMLCRENKLEEAIRLFKMMRALDLMPDELTYEELI 314 (729)
Q Consensus 235 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 314 (729)
||..-...+.+-|.+.|.++.|..++..+.+ |..++..+.+.++++.|.+++... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4555555666777788888888888876654 667778888888888887777644 2456777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHH
Q 004813 315 NCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEVGKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKC 394 (729)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 394 (729)
..+.+......+ .+.......+.... ..++..|...|.+++...
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l-------------------------------~~~v~~ye~~~~~e~Li~ 120 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADEL-------------------------------EELINYYQDRGYFEELIT 120 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHH-------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHH-------------------------------HHHHHHHHHcCChHHHHH
Confidence 777776655433 12222233444445 344455555555555555
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHhc
Q 004813 395 ILEKMADRKIADCDSWNIPIRWLCEN 420 (729)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (729)
+++........+...++.++..|++.
T Consensus 121 ~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 121 MLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccchHHHHHHHHHHHHh
Confidence 55554433222444555566655554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00013 Score=57.73 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHHHHHH
Q 004813 519 IYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGCA-LD-----VEAYCILIQSM 592 (729)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~~~~ 592 (729)
...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++++..+. +. ..+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 223344444444444444444444444444332110 00 12333444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004813 593 SEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 593 ~~~~~~~~A~~~~~~~~~ 610 (729)
...+++++|++.|.+...
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 445555555555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=0.00022 Score=60.06 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=84.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 004813 553 IMLGLVKLQRAKDLLVVLAQMLVE--GCALDVEAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADG 630 (729)
Q Consensus 553 l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 630 (729)
........|++++|.+.|.+.+.. |.... .......+...-..+... ....+..+..++...
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 335567788888888888888764 21100 000001111111111110 124667788899999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHH
Q 004813 631 SQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLG-----KGWVPDATTH 690 (729)
Q Consensus 631 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 690 (729)
|++++|+..++++.+. .+.+...|..++.+|.+.|++.+|++.|+++.+ .|+.|...+-
T Consensus 81 g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 81 GRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999999998 577889999999999999999999999998743 5999998663
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00046 Score=56.51 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhC
Q 004813 584 AYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSD 646 (729)
Q Consensus 584 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (729)
+|+.+..+|.+.|++++|++.++++++.+ +.+...|..+..++...|++++|+..|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444455555555555555544431 113444444555555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.70 E-value=0.00032 Score=58.58 Aligned_cols=72 Identities=10% Similarity=-0.064 Sum_probs=45.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004813 619 TMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLL 693 (729)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 693 (729)
+|..+..+|.+.|++++|+..+++..+. .|.+...|..++.+|...|++++|.+.|+++++ +.|+.......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~ 137 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQ 137 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 3445556666677777777777776665 355666666777777777777777777777665 34555443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.65 E-value=0.0014 Score=54.55 Aligned_cols=95 Identities=5% Similarity=-0.041 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 004813 583 EAYCILIQSMSEQNKLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGL 662 (729)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 662 (729)
..|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+. .|.+...+..+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 345566777788888888888888888753 235677778888888888888888888888876 355666666666555
Q ss_pred HhcCChh-HHHHHHHHHH
Q 004813 663 WKEGLTS-QASYLLDLML 679 (729)
Q Consensus 663 ~~~g~~~-~A~~~~~~~~ 679 (729)
.+.+... ...+++..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 5544433 2344444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00021 Score=59.90 Aligned_cols=71 Identities=10% Similarity=-0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004813 617 RETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTH 690 (729)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 690 (729)
...|..+..++.+.|++++|+..++++++. .+.++..|..++.+|...|++++|++.|++.++ +.|+....
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~ 147 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAI 147 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHH
Confidence 446677788889999999999999999987 467788999999999999999999999999998 45655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00055 Score=57.23 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK 610 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 610 (729)
.|..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|++.|+++++
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444555555556666666666655554433 455555555566666666666666665555
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=4.7e-05 Score=76.95 Aligned_cols=113 Identities=9% Similarity=-0.101 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 004813 477 SISYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLG 556 (729)
Q Consensus 477 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 556 (729)
...+..+...+.+.|+.++|...+....... ....+..+...+...|++++|...|+++.+.. +.+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555666666666666555554321 12345556666666666777776666666653 3344566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004813 557 LVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSE 594 (729)
Q Consensus 557 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (729)
+...|+..+|...|.+.+... .|...++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666667666766666666553 3455566666555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.0024 Score=53.45 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVMVK-----AGLVPDRET 619 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 619 (729)
.+..+..++...|++++|+..++++++..+. +...|..++.+|...|+.++|++.|+++.+ .|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4555667777777777777777777776544 677777777777777777777777777643 367776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.43 E-value=0.00044 Score=55.87 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004813 633 LHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKG 682 (729)
Q Consensus 633 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 682 (729)
+++|.+.|++..+. .|+...|..-+..+ .+|.+++.++.+.|
T Consensus 102 ~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 102 FDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 45566666666654 34444333322222 24555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00044 Score=55.89 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=63.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004813 489 QVEKITEAVEVFCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLV 568 (729)
Q Consensus 489 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 568 (729)
+.+.+++|...|+...+.. +.+..++..+..++...+++..+.+ ..+.+++|++
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHHH
Confidence 4455666666666665543 3345555555555543322211111 1122345666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 004813 569 VLAQMLVEGCALDVEAYCILIQSMSEQN-----------KLKDCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVS 637 (729)
Q Consensus 569 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 637 (729)
.|++.++.++. +..+|..+..+|...| .+++|.+.|++.++ +.|+...+..-+..+ ..|.
T Consensus 63 ~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~ 133 (145)
T d1zu2a1 63 KFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAP 133 (145)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHH
T ss_pred HHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHH
Confidence 66666655433 4555555555554433 35677777877776 566665555444333 3455
Q ss_pred HHHHHHHhC
Q 004813 638 SGINKLVSD 646 (729)
Q Consensus 638 ~~~~~~~~~ 646 (729)
+++.+..+.
T Consensus 134 ~~~~e~~k~ 142 (145)
T d1zu2a1 134 QLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00023 Score=64.22 Aligned_cols=122 Identities=9% Similarity=-0.037 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCccc-HHhHHHHHHHHHhcCCChh
Q 004813 106 LGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLS-VDVFNVVLGAIVEEKRGFA 184 (729)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 184 (729)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.|+...+. .|+ ...+..+...+... +..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~-~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-QARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc-cccH
Confidence 455677777777777777765 667777777777777777777777777777654 233 22333222222222 2222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004813 185 DFVFVYKEMVKAGIVPNVDTLNYLLEVLFETNRIESALDQFRRMHKK 231 (729)
Q Consensus 185 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 231 (729)
++..-.......+.+++...+......+...|+.++|.++++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111111111222333344455566677777777777776653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.30 E-value=0.00034 Score=63.02 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=87.6
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 004813 70 LDNTNDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNG 149 (729)
Q Consensus 70 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (729)
....|++++|+..|+.+.+.. |.+...+..+...++..|++++|...++...+.. |.....+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 456799999999999998875 7889999999999999999999999999999886 4555666666555544443333
Q ss_pred HHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004813 150 AMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKA 196 (729)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 196 (729)
+..-.......+-+++...+......+.+. |+.++|...++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~-gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVS-QDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhc
Confidence 322222111112122333344445566677 9999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0038 Score=50.98 Aligned_cols=90 Identities=12% Similarity=-0.033 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHhccCChHHHHHHHHHHHhC-----CCCCC---
Q 004813 591 SMSEQNKLKDCALFFNVMVKAG-LVPD----------RETMLSLLHGLADGSQLHLVSSGINKLVSD-----SEVLD--- 651 (729)
Q Consensus 591 ~~~~~~~~~~A~~~~~~~~~~~-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--- 651 (729)
.+...|++++|++.|++.++.. -.|+ ...|+.+..+|...|++++|.+.+++..+. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 3445566666666666555420 0011 245566666666677777666666665542 01111
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 652 --SSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 652 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
...|+.++.+|...|++++|++.|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22566788888888888888888888664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.90 E-value=0.0086 Score=48.71 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004813 549 TYTKIMLGLVKLQRAKDLLVVLAQMLVE-----GCALD-----VEAYCILIQSMSEQNKLKDCALFFNVMV 609 (729)
Q Consensus 549 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 609 (729)
.|+.+..+|.+.|++++|.+.+++.++. ...++ ...++.+..+|...|++++|++.|++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544431 11111 1123444455555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0044 Score=45.29 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=30.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhC-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004813 622 SLLHGLADGSQLHLVSSGINKLVSD-----SEVL-DSSMYNILINGLWKEGLTSQASYLLDLMLG 680 (729)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (729)
.+...+.+.|++++|+..|++..+. ...+ ...+++.++.+|.+.|++++|++.++++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 4444555555555555555554432 0011 123455566666666666666666666655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.015 Score=42.36 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004813 96 ADTYCKMILKLGLAGNVEEMEGLCQNMVKER------YPNVREALISLVFSFVNHYRVNGAMRVLVNMNSG 160 (729)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 160 (729)
...+..+...+.+.|++++|...|++..+.. ......++..+..++.+.|++++|++.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344455556666666666666665554331 0112345555666666666666666666666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.24 E-value=0.06 Score=41.93 Aligned_cols=81 Identities=11% Similarity=-0.045 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCC
Q 004813 596 NKLKDCALFFNVMVKAGLVPDRETMLSLLHGLAD----GSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWK----EGL 667 (729)
Q Consensus 596 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 667 (729)
.+.++|.+++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..|
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45666666666666654 33333444444432 345677777777777764 44555556666654 356
Q ss_pred hhHHHHHHHHHHhCC
Q 004813 668 TSQASYLLDLMLGKG 682 (729)
Q Consensus 668 ~~~A~~~~~~~~~~g 682 (729)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 777777777777665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.66 Score=44.77 Aligned_cols=406 Identities=11% Similarity=0.028 Sum_probs=177.8
Q ss_pred CCchhHHHHhhcCC-CCCHHHHHHHHHcC---CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004813 46 QTTDYEAKIQSLRH-NLSPDHLIRVLDNT---NDLSSALKIFKWVSIQKRFQHTADTYCKMILKLGLAGNVEEMEGLCQN 121 (729)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 121 (729)
....+......+.+ ++.+......|... ........|++ +.++.+.....-...+..+.+.++++.....+.
T Consensus 21 ~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~---~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~- 96 (450)
T d1qsaa1 21 QMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRGLLAFSP- 96 (450)
T ss_dssp CHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-
T ss_pred CHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-
Confidence 33344444455543 44554444544432 23444444443 333333333444455667777777766554332
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC
Q 004813 122 MVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDVFNVVLGAIVEEKRGFADFVFVYKEMVKAGIVPN 201 (729)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 201 (729)
..+.+...-...+.+....|+.+.|...+..+-..| ...+..+..+ |..+.+.| ..+
T Consensus 97 ----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l-----------------~~~~~~~~-~lt 153 (450)
T d1qsaa1 97 ----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKL-----------------FSVWRASG-KQD 153 (450)
T ss_dssp ----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHH-----------------HHHHHHTT-CSC
T ss_pred ----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHH-----------------HHHHHhcC-CCC
Confidence 234556666677777777888877777766663332 1112222223 33333322 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004813 202 VDTLNYLLEVLFETNRIESALDQFRRMHKKGCCPNSRTFEIVIKGLIANSRVDDSVSILGEMFDLGIQLELSFYTCIIPM 281 (729)
Q Consensus 202 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 281 (729)
...+-.-+......|++..|..+...+... ........+.... +...+..... .. ..+......+..+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFAR---TT--GATDFTRQMAAVA 221 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHHHHHH
Confidence 333334444555566777666665433211 1122222222221 2222222211 11 1222222222222
Q ss_pred HHh--cCCHHHHHHHHHHHHhCCCCCCHhhHHHH----HHHHHhcCChhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHcc
Q 004813 282 LCR--ENKLEEAIRLFKMMRALDLMPDELTYEEL----INCLCENLRLDDANDILEDMIVIGLTPTDDVFVDIVRGLCEV 355 (729)
Q Consensus 282 ~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 355 (729)
+.+ ..+.+.|..++........ .+...+..+ .......+..+.+..++......+ .+.......+
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~------ 292 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV------ 292 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH------
T ss_pred HHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHH------
Confidence 222 3467777777777655322 122222221 222233455666766666655443 2333332222
Q ss_pred CChHHHHHHHHhhcCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCHHHHHHHHHHHHH
Q 004813 356 GKFDESVNFLEDKCGYVTSPHNALLECCCNAGKFFLAKCILEKMADRKIADCDSWNIPIRWLCENEEIRKAYELLGRMVV 435 (729)
Q Consensus 356 ~~~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 435 (729)
......+++..+...+..+.........-.-=+..++...|+.+.|...|.....
T Consensus 293 -------------------------~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 293 -------------------------RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp -------------------------HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -------------------------HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 2233344455555554444321111111112233445555666666666655542
Q ss_pred CCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 004813 436 SSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSI---SYSKLVEGLCQVEKITEAVEVFCCMSKNGCSLSS 512 (729)
Q Consensus 436 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 512 (729)
.++ |-..+.+ .+.|..-.. -..-...... ... .-...+..+...|....|...+..+... .+.
T Consensus 348 ---~~~---fYG~LAa-~~Lg~~~~~---~~~~~~~~~~-~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~ 413 (450)
T d1qsaa1 348 ---QRG---FYPMVAA-QRIGEEYEL---KIDKAPQNVD-SALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSK 413 (450)
T ss_dssp ---SCS---HHHHHHH-HHTTCCCCC---CCCCCCSCCC-CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCH
T ss_pred ---CCC---hHHHHHH-HHcCCCCCC---CcCCCCccHH-HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCH
Confidence 122 2222211 111110000 0000000000 000 0011234455677777777777776653 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 513 SSFNILIYGLCVMRKVDKAIRLRSLA 538 (729)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (729)
.....+.....+.|.++.|+......
T Consensus 414 ~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 414 TEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 55556666677777777777665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.80 E-value=0.21 Score=38.65 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 004813 422 EIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQ----VEKITEAV 497 (729)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 497 (729)
++++|+++|++..+.|- ...+..+. .....+.++|..+++...+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 44555555555555441 11111111 122344555555555555543 23333333333332 23455555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004813 498 EVFCCMSKNGCSLSSSSFNILIYGLCV----MRKVDKAIRLRSLAYSSG 542 (729)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 542 (729)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555543 23333334444433 234555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.069 Score=40.06 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004813 614 VPDRETMLSLLHGLADGS---QLHLVSSGINKLVSDSEVLD-SSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATT 689 (729)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 689 (729)
.|...+--.+.+++.+.. +.++++.+++++...+ +.+ ...+..|+-+|.+.|++++|.+.++.+++ +.|++.-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 456667777778887654 4568888888888753 334 35778899999999999999999999998 5788766
Q ss_pred HHHHHhhh
Q 004813 690 HGLLVGSS 697 (729)
Q Consensus 690 ~~~ll~~~ 697 (729)
...+...+
T Consensus 109 A~~L~~~I 116 (124)
T d2pqrb1 109 VGALKSMV 116 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.88 E-value=0.48 Score=34.95 Aligned_cols=66 Identities=18% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 004813 618 ETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWV 684 (729)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 684 (729)
..++..++.+..+|+-+.-.++.+.+.+. ..+++...-.++.+|.+-|+..++-+++.+.-+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 34445556666667666666666665554 4666666777777777777777777777777766653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.92 E-value=0.81 Score=33.71 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 004813 516 NILIYGLCVMRKVDKAIRLRSLAYSSGTSYTTSTYTKIMLGLVKLQRAKDLLVVLAQMLVEGC 578 (729)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 578 (729)
+..++....+|+-++-.++++.+.+.+ .+++...-.+..+|-+.|...++-+++.+..+.|.
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444455555555555555544433 45555555555555555555555555555555544
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.98 E-value=1.5 Score=32.58 Aligned_cols=73 Identities=14% Similarity=-0.002 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCcccHHh
Q 004813 94 HTADTYCKMILKLGLAG---NVEEMEGLCQNMVKERYPNVREALISLVFSFVNHYRVNGAMRVLVNMNSGGFKLSVDV 168 (729)
Q Consensus 94 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 168 (729)
++..+--...-++.+.. +.+++..+++++...+.......+..|.-+|.+.|++++|.+.++.+.+. .|+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHH
Confidence 44444444445555554 45678888888876652223467778888888999999999999888774 454443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.85 E-value=2.1 Score=29.78 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHH
Q 004813 600 DCALFFNVMVKAGLVPDRETMLSLLHGLADGSQLHLVSSGINKLVSDSEVLDSSMYNIL 658 (729)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 658 (729)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+....+ ..++...|..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yi 81 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 81 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHH
Confidence 44555555555566666666666666666666666666666666554 22233444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.06 E-value=3.5 Score=28.67 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHhhh
Q 004813 632 QLHLVSSGINKLVSDSEVLDSSMYNILINGLWKEGLTSQASYLLDLMLGKGWVPDATTHGLLVGSS 697 (729)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 697 (729)
+.-++.+-++.+......|++.+..+.+++|.+.+|+.-|+++++-.+.+ ..++...|.-++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 55677888888888889999999999999999999999999999998865 334555676666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.36 E-value=15 Score=34.51 Aligned_cols=169 Identities=6% Similarity=-0.099 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004813 420 NEEIRKAYELLGRMVVSSVVPDCATYSAFVLGKCKLCNYEDALRVFRQVSAQSLVLDSISYSKLVEGLCQVEKITEAVEV 499 (729)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 499 (729)
.+..+.+...+......+. +.......+......+++..+...+..+...... .....--+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHH
Confidence 3445555555555544432 2333333344445566777777777666432211 233333455666777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH-H---hHHHHHHHHHhcCChhHHHHHHHHH
Q 004813 500 FCCMSKNGCSLSSSSFNILIYGLCVMRKVDKAIRLRSLAYSSGTS--YTT-S---TYTKIMLGLVKLQRAKDLLVVLAQM 573 (729)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~~ 573 (729)
|..+... ++ .|..|... +.|..-. +....+. +.. . .-..-+..+...|....|...|..+
T Consensus 342 ~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 7777642 33 22222211 1111000 0000000 000 0 0112345566788888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004813 574 LVEGCALDVEAYCILIQSMSEQNKLKDCALFFNVM 608 (729)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 608 (729)
... .+......+.....+.|.++.|+....+.
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 653 24555666777778888888888766554
|